Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184680 | XP_013469869.1 | 94.472 | 199 | 11 | 0 | 1 | 199 | 1 | 199 | 2.28e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184680 | sp|Q84MC0|UGPI4_ARATH | 58.659 | 179 | 70 | 2 | 25 | 199 | 21 | 199 | 3.23e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184680 | A0A072VQ56 | 94.472 | 199 | 11 | 0 | 1 | 199 | 1 | 199 | 1.09e-133 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa0184680 | 0.924547 | 6.089632e-90 | -8.615850e-47 |
| Msa0179990 | Msa0184680 | 0.823766 | 1.160836e-53 | -8.615850e-47 |
| Msa0184680 | Msa0193850 | 0.809078 | 2.260550e-50 | -8.615850e-47 |
| Msa0184680 | Msa0235710 | 0.810024 | 1.416041e-50 | -8.615850e-47 |
| Msa0184680 | Msa0274440 | 0.836856 | 7.322752e-57 | -8.615850e-47 |
| Msa0184680 | Msa0280690 | 0.805333 | 1.404318e-49 | -8.615850e-47 |
| Msa0184680 | Msa0314170 | 0.814529 | 1.471148e-51 | -8.615850e-47 |
| Msa0184680 | Msa0601820 | 0.816504 | 5.346223e-52 | -8.615850e-47 |
| Msa0184680 | Msa0688820 | 0.976074 | 3.901614e-141 | -8.615850e-47 |
| Msa0184680 | Msa0968350 | 0.870026 | 1.991198e-66 | -8.615850e-47 |
| Msa0184680 | Msa1037550 | 0.824222 | 9.070839e-54 | -8.615850e-47 |
| Msa0184680 | Msa1078930 | 0.861476 | 9.991578e-64 | -8.615850e-47 |
| Msa0184680 | Msa1123930 | 0.864131 | 1.515559e-64 | -8.615850e-47 |
| Msa0184680 | Msa1130430 | 0.800644 | 1.308326e-48 | -8.615850e-47 |
| Msa0184680 | Msa1131290 | 0.822302 | 2.547530e-53 | -8.615850e-47 |
| Msa0184680 | Msa1169230 | 0.836358 | 9.808072e-57 | -8.615850e-47 |
| Msa0184680 | Msa1222590 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa0184680 | Msa1264570 | 0.853545 | 2.225916e-61 | -8.615850e-47 |
| Msa0184680 | Msa1340700 | 0.804408 | 2.191913e-49 | -8.615850e-47 |
| Msa0184680 | Msa1426070 | 0.859206 | 4.856362e-63 | -8.615850e-47 |
| Msa0184680 | Msa1445050 | 0.801337 | 9.443033e-49 | -8.615850e-47 |
| Msa0184680 | Msa1446110 | 0.832682 | 8.223684e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184680 | MtrunA17_Chr1g0205951 | 94.472 | 199 | 11 | 0 | 1 | 199 | 1 | 199 | 2.10e-137 | 382 |
| Msa0184680 | MtrunA17_Chr5g0394151 | 63.902 | 205 | 64 | 2 | 1 | 199 | 1 | 201 | 5.20e-96 | 277 |
| Msa0184680 | MtrunA17_Chr1g0191761 | 36.943 | 157 | 96 | 3 | 20 | 173 | 26 | 182 | 8.28e-32 | 114 |
| Msa0184680 | MtrunA17_Chr7g0272941 | 38.889 | 144 | 84 | 3 | 19 | 159 | 17 | 159 | 3.24e-31 | 112 |
| Msa0184680 | MtrunA17_Chr1g0191781 | 32.727 | 165 | 105 | 3 | 11 | 169 | 6 | 170 | 1.18e-27 | 103 |
| Msa0184680 | MtrunA17_Chr1g0191771 | 34.328 | 134 | 87 | 1 | 31 | 163 | 46 | 179 | 2.74e-23 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184680 | AT3G06035.1 | 58.659 | 179 | 70 | 2 | 25 | 199 | 21 | 199 | 3.29e-72 | 217 |
| Msa0184680 | AT5G19250.1 | 61.078 | 167 | 63 | 1 | 24 | 188 | 19 | 185 | 1.92e-68 | 207 |
| Msa0184680 | AT1G54860.1 | 41.808 | 177 | 85 | 4 | 1 | 168 | 2 | 169 | 1.06e-46 | 152 |
| Msa0184680 | AT5G19240.1 | 45.349 | 172 | 88 | 3 | 23 | 192 | 20 | 187 | 2.24e-46 | 152 |
| Msa0184680 | AT5G19230.2 | 45.562 | 169 | 80 | 3 | 1 | 169 | 1 | 157 | 4.04e-41 | 138 |
| Msa0184680 | AT5G19230.1 | 45.562 | 169 | 80 | 3 | 1 | 169 | 1 | 157 | 4.04e-41 | 138 |
Find 42 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGACATTTAGCTAAA+AGG | 0.190847 | 1_4:-74257048 | None:intergenic |
| CCAAGTTCTCTCTATTCTTC+TGG | 0.209568 | 1_4:+74256226 | Msa0184680:CDS |
| GTTATGCCTGCCTGTGTTCC+TGG | 0.264326 | 1_4:+74257097 | Msa0184680:CDS |
| TCCAACTTTGGAAATCAAAT+TGG | 0.265283 | 1_4:-74257290 | None:intergenic |
| TGAGAGAGATAATCTTTATC+AGG | 0.299934 | 1_4:+74256856 | Msa0184680:CDS |
| TGACATTTAGCTAAAAGGTT+TGG | 0.301742 | 1_4:-74257043 | None:intergenic |
| AGCTAAAAGGTTTGGGTAGT+TGG | 0.318984 | 1_4:-74257035 | None:intergenic |
| GTATTGGCTCAGAAGATAAC+TGG | 0.333128 | 1_4:+74257203 | Msa0184680:CDS |
| GACATTTAGCTAAAAGGTTT+GGG | 0.340607 | 1_4:-74257042 | None:intergenic |
| CCAGAAGAATAGAGAGAACT+TGG | 0.347419 | 1_4:-74256226 | None:intergenic |
| GCAATAAATCATTCCAACTT+TGG | 0.358521 | 1_4:-74257302 | None:intergenic |
| TACATGGTTGATTCTTGAAT+TGG | 0.360348 | 1_4:-74256964 | None:intergenic |
| ATTGGCAGCATTAGAACTAT+AGG | 0.374058 | 1_4:-74257272 | None:intergenic |
| GCCAATTTGATTTCCAAAGT+TGG | 0.375408 | 1_4:+74257289 | Msa0184680:CDS |
| TTGGCAGCATTAGAACTATA+GGG | 0.380106 | 1_4:-74257271 | None:intergenic |
| CATCCTCTAGGTATCATAAC+AGG | 0.398840 | 1_4:-74257354 | None:intergenic |
| TCACCGTCATCACATTTAAC+TGG | 0.400596 | 1_4:-74256288 | None:intergenic |
| GACACACAGTATACAGGAAT+TGG | 0.421140 | 1_4:+74257181 | Msa0184680:CDS |
| TGCTCAATTCTCTTGTTAGC+TGG | 0.427277 | 1_4:+74257322 | Msa0184680:CDS |
| CTCAACGACACACAGTATAC+AGG | 0.481619 | 1_4:+74257175 | Msa0184680:CDS |
| TTGACCACTGACACTCCAAC+AGG | 0.483770 | 1_4:+74257238 | Msa0184680:CDS |
| TTTGGGTAGTTGGAGAATTG+AGG | 0.485525 | 1_4:-74257025 | None:intergenic |
| ATTGGCTATTTCTGATACAA+AGG | 0.497292 | 1_4:+74257066 | Msa0184680:CDS |
| ACGAGGCTTGAAGCTAGGCC+AGG | 0.504069 | 1_4:-74257115 | None:intergenic |
| TGAAGCTAGGCCAGGAACAC+AGG | 0.509872 | 1_4:-74257107 | None:intergenic |
| GCTAGGCCAGGAACACAGGC+AGG | 0.513127 | 1_4:-74257103 | None:intergenic |
| GAGAATTGAGGTTCAGTACC+TGG | 0.522201 | 1_4:-74257013 | None:intergenic |
| GCTATTTCTGATACAAAGGA+TGG | 0.531181 | 1_4:+74257070 | Msa0184680:CDS |
| CAGTATACAGGAATTGGTAT+TGG | 0.536270 | 1_4:+74257187 | Msa0184680:CDS |
| GCACCTGTGGTATTTGTACA+TGG | 0.542966 | 1_4:-74256980 | None:intergenic |
| TCGTGAAGTTAGTGAGGACG+AGG | 0.562843 | 1_4:-74257132 | None:intergenic |
| TGAGGACGAGGCTTGAAGCT+AGG | 0.566605 | 1_4:-74257120 | None:intergenic |
| GTTTCCTGTTGGAGTGTCAG+TGG | 0.576612 | 1_4:-74257242 | None:intergenic |
| GAGATTTCGTGAAGTTAGTG+AGG | 0.582648 | 1_4:-74257138 | None:intergenic |
| GAGAGAGATAATCTTTATCA+GGG | 0.592178 | 1_4:+74256857 | Msa0184680:CDS |
| TATCCAGTTAAATGTGATGA+CGG | 0.600716 | 1_4:+74256285 | Msa0184680:CDS |
| TGGTACTGTATTAGCACCTG+TGG | 0.607702 | 1_4:-74256993 | None:intergenic |
| TGGCAGCATTAGAACTATAG+GGG | 0.612217 | 1_4:-74257270 | None:intergenic |
| ACAGGTGCTAATACAGTACC+AGG | 0.621692 | 1_4:+74256995 | Msa0184680:CDS |
| CAGAAGAATAGAGAGAACTT+GGG | 0.624874 | 1_4:-74256225 | None:intergenic |
| CAACCATGTACAAATACCAC+AGG | 0.631778 | 1_4:+74256977 | Msa0184680:CDS |
| GGCAGCATTAGAACTATAGG+GGG | 0.666389 | 1_4:-74257269 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGACCAATACAAAATA+TGG | - | chr1_4:74256369-74256388 | None:intergenic | 20.0% |
| !!! | ATTTTGACCAATACAAAATA+TGG | - | chr1_4:74256369-74256388 | None:intergenic | 20.0% |
| !! | TCTTAGACCATATTTTGTAT+TGG | + | chr1_4:74256359-74256378 | Msa0184680:intron | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | + | chr1_4:74256434-74256453 | Msa0184680:intron | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | + | chr1_4:74256434-74256453 | Msa0184680:intron | 25.0% |
| !! | TCTTAGACCATATTTTGTAT+TGG | + | chr1_4:74256359-74256378 | Msa0184680:intron | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | + | chr1_4:74256434-74256453 | Msa0184680:intron | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | + | chr1_4:74256434-74256453 | Msa0184680:intron | 25.0% |
| TATCCAGTTAAATGTGATGA+CGG | + | chr1_4:74256285-74256304 | Msa0184680:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | - | chr1_4:74256728-74256747 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | - | chr1_4:74256794-74256813 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | - | chr1_4:74256834-74256853 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | + | chr1_4:74256856-74256875 | Msa0184680:CDS | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | + | chr1_4:74256857-74256876 | Msa0184680:CDS | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | - | chr1_4:74256967-74256986 | None:intergenic | 30.0% |
| GACATTTAGCTAAAAGGTTT+GGG | - | chr1_4:74257045-74257064 | None:intergenic | 30.0% | |
| TGACATTTAGCTAAAAGGTT+TGG | - | chr1_4:74257046-74257065 | None:intergenic | 30.0% | |
| CCAATTGACATTTAGCTAAA+AGG | - | chr1_4:74257051-74257070 | None:intergenic | 30.0% | |
| !! | CCTTTTAGCTAAATGTCAAT+TGG | + | chr1_4:74257048-74257067 | Msa0184680:CDS | 30.0% |
| !! | ATTGGCTATTTCTGATACAA+AGG | + | chr1_4:74257066-74257085 | Msa0184680:CDS | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | - | chr1_4:74257293-74257312 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | - | chr1_4:74257305-74257324 | None:intergenic | 30.0% | |
| TATCCAGTTAAATGTGATGA+CGG | + | chr1_4:74256285-74256304 | Msa0184680:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | - | chr1_4:74256728-74256747 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | - | chr1_4:74256794-74256813 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | - | chr1_4:74256834-74256853 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | + | chr1_4:74256856-74256875 | Msa0184680:CDS | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | + | chr1_4:74256857-74256876 | Msa0184680:CDS | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | - | chr1_4:74256967-74256986 | None:intergenic | 30.0% |
| GACATTTAGCTAAAAGGTTT+GGG | - | chr1_4:74257045-74257064 | None:intergenic | 30.0% | |
| TGACATTTAGCTAAAAGGTT+TGG | - | chr1_4:74257046-74257065 | None:intergenic | 30.0% | |
| CCAATTGACATTTAGCTAAA+AGG | - | chr1_4:74257051-74257070 | None:intergenic | 30.0% | |
| !! | CCTTTTAGCTAAATGTCAAT+TGG | + | chr1_4:74257048-74257067 | Msa0184680:CDS | 30.0% |
| !! | ATTGGCTATTTCTGATACAA+AGG | + | chr1_4:74257066-74257085 | Msa0184680:CDS | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | - | chr1_4:74257293-74257312 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | - | chr1_4:74257305-74257324 | None:intergenic | 30.0% | |
| CAGAAGAATAGAGAGAACTT+GGG | - | chr1_4:74256228-74256247 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | - | chr1_4:74256507-74256526 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | + | chr1_4:74256627-74256646 | Msa0184680:intron | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | - | chr1_4:74256633-74256652 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | - | chr1_4:74256835-74256854 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGATACAAAGGA+TGG | + | chr1_4:74257070-74257089 | Msa0184680:CDS | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | + | chr1_4:74257187-74257206 | Msa0184680:CDS | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | - | chr1_4:74257274-74257293 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | - | chr1_4:74257275-74257294 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | + | chr1_4:74257289-74257308 | Msa0184680:CDS | 35.0% |
| CAGAAGAATAGAGAGAACTT+GGG | - | chr1_4:74256228-74256247 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | - | chr1_4:74256507-74256526 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | + | chr1_4:74256627-74256646 | Msa0184680:intron | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | - | chr1_4:74256633-74256652 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | - | chr1_4:74256835-74256854 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGATACAAAGGA+TGG | + | chr1_4:74257070-74257089 | Msa0184680:CDS | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | + | chr1_4:74257187-74257206 | Msa0184680:CDS | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | - | chr1_4:74257274-74257293 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | - | chr1_4:74257275-74257294 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | + | chr1_4:74257289-74257308 | Msa0184680:CDS | 35.0% |
| CCAGAAGAATAGAGAGAACT+TGG | - | chr1_4:74256229-74256248 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | + | chr1_4:74256226-74256245 | Msa0184680:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | - | chr1_4:74256291-74256310 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | - | chr1_4:74256508-74256527 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | - | chr1_4:74256658-74256677 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | + | chr1_4:74256749-74256768 | Msa0184680:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | - | chr1_4:74256817-74256836 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | - | chr1_4:74256946-74256965 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | + | chr1_4:74256977-74256996 | Msa0184680:CDS | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | - | chr1_4:74257028-74257047 | None:intergenic | 40.0% | |
| AGCTAAAAGGTTTGGGTAGT+TGG | - | chr1_4:74257038-74257057 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | - | chr1_4:74257141-74257160 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | + | chr1_4:74257181-74257200 | Msa0184680:CDS | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | + | chr1_4:74257203-74257222 | Msa0184680:CDS | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | - | chr1_4:74257273-74257292 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | + | chr1_4:74257322-74257341 | Msa0184680:CDS | 40.0% | |
| CCAGAAGAATAGAGAGAACT+TGG | - | chr1_4:74256229-74256248 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | + | chr1_4:74256226-74256245 | Msa0184680:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | - | chr1_4:74256291-74256310 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | - | chr1_4:74256508-74256527 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | - | chr1_4:74256658-74256677 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | + | chr1_4:74256749-74256768 | Msa0184680:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | - | chr1_4:74256817-74256836 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | - | chr1_4:74256946-74256965 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | + | chr1_4:74256977-74256996 | Msa0184680:CDS | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | - | chr1_4:74257028-74257047 | None:intergenic | 40.0% | |
| AGCTAAAAGGTTTGGGTAGT+TGG | - | chr1_4:74257038-74257057 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | - | chr1_4:74257141-74257160 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | + | chr1_4:74257181-74257200 | Msa0184680:CDS | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | + | chr1_4:74257203-74257222 | Msa0184680:CDS | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | - | chr1_4:74257273-74257292 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | + | chr1_4:74257322-74257341 | Msa0184680:CDS | 40.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | - | chr1_4:74256764-74256783 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | - | chr1_4:74256983-74257002 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | - | chr1_4:74256996-74257015 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | + | chr1_4:74256995-74257014 | Msa0184680:CDS | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | - | chr1_4:74257016-74257035 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | + | chr1_4:74257175-74257194 | Msa0184680:CDS | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | - | chr1_4:74257272-74257291 | None:intergenic | 45.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | - | chr1_4:74256764-74256783 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | - | chr1_4:74256983-74257002 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | - | chr1_4:74256996-74257015 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | + | chr1_4:74256995-74257014 | Msa0184680:CDS | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | - | chr1_4:74257016-74257035 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | + | chr1_4:74257175-74257194 | Msa0184680:CDS | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | - | chr1_4:74257272-74257291 | None:intergenic | 45.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | - | chr1_4:74256581-74256600 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | - | chr1_4:74256582-74256601 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | - | chr1_4:74257135-74257154 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | + | chr1_4:74257238-74257257 | Msa0184680:CDS | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | - | chr1_4:74257245-74257264 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | - | chr1_4:74257256-74257275 | None:intergenic | 50.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | - | chr1_4:74256581-74256600 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | - | chr1_4:74256582-74256601 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | - | chr1_4:74257135-74257154 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | + | chr1_4:74257238-74257257 | Msa0184680:CDS | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | - | chr1_4:74257245-74257264 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | - | chr1_4:74257256-74257275 | None:intergenic | 50.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | + | chr1_4:74257097-74257116 | Msa0184680:CDS | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | - | chr1_4:74257110-74257129 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | - | chr1_4:74257123-74257142 | None:intergenic | 55.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | + | chr1_4:74257097-74257116 | Msa0184680:CDS | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | - | chr1_4:74257110-74257129 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | - | chr1_4:74257123-74257142 | None:intergenic | 55.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | - | chr1_4:74257118-74257137 | None:intergenic | 60.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | - | chr1_4:74257118-74257137 | None:intergenic | 60.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | - | chr1_4:74257106-74257125 | None:intergenic | 65.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | - | chr1_4:74257106-74257125 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 74256216 | 74257363 | 74256216 | ID=Msa0184680;Name=Msa0184680 |
| chr1_4 | mRNA | 74256216 | 74257363 | 74256216 | ID=Msa0184680-mRNA-1;Parent=Msa0184680;Name=Msa0184680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0|0.5|2|0|199 |
| chr1_4 | exon | 74256216 | 74256306 | 74256216 | ID=Msa0184680-mRNA-1:exon:25272;Parent=Msa0184680-mRNA-1 |
| chr1_4 | exon | 74256855 | 74257363 | 74256855 | ID=Msa0184680-mRNA-1:exon:25273;Parent=Msa0184680-mRNA-1 |
| chr1_4 | CDS | 74256216 | 74256306 | 74256216 | ID=Msa0184680-mRNA-1:cds;Parent=Msa0184680-mRNA-1 |
| chr1_4 | CDS | 74256855 | 74257363 | 74256855 | ID=Msa0184680-mRNA-1:cds;Parent=Msa0184680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
