Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180910 | XP_003592377.1 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180910 | sp|Q8GW72|FUCO1_ARATH | 52.954 | 457 | 203 | 5 | 32 | 482 | 31 | 481 | 1.68e-173 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180910 | G7ID38 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039820 | Msa0180910 | 0.808532 | 2.956909e-50 | -8.615850e-47 |
| Msa0134210 | Msa0180910 | 0.858908 | 5.961426e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180910 | MtrunA17_Chr1g0204281 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 989 |
| Msa0180910 | MtrunA17_Chr2g0327361 | 49.666 | 449 | 213 | 7 | 40 | 481 | 63 | 505 | 1.08e-146 | 431 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180910 | AT2G28100.1 | 52.954 | 457 | 203 | 5 | 32 | 482 | 31 | 481 | 1.71e-174 | 500 |
Find 121 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACCATTGGATTGAAATT+TGG | 0.128278 | 1_4:-68910653 | Msa0180910:CDS |
| ATCATAATGTTCCTTCATTT+TGG | 0.171411 | 1_4:-68913609 | Msa0180910:CDS |
| GCTTTACAATGAATACTATT+TGG | 0.197540 | 1_4:-68913262 | Msa0180910:CDS |
| ATCAAGATGTTAGGGAAATT+TGG | 0.202068 | 1_4:-68912991 | Msa0180910:CDS |
| GGACCATTGGATTGAAATTT+GGG | 0.220625 | 1_4:-68910652 | Msa0180910:CDS |
| TGAAAGAGATGTTCGATTAA+TGG | 0.224854 | 1_4:+68912799 | None:intergenic |
| ATTATAGATATCAAGATGTT+AGG | 0.257376 | 1_4:-68913000 | Msa0180910:intron |
| TTATTTCTTGTATAGATCTT+TGG | 0.261651 | 1_4:-68910220 | Msa0180910:three_prime_UTR |
| CAATTCGTCCAGGATGGTTT+TGG | 0.262464 | 1_4:-68910986 | Msa0180910:CDS |
| GGTAGCCAATCTGTCCCTTT+TGG | 0.269654 | 1_4:+68911026 | None:intergenic |
| AGATAATTATATATTGTTCT+AGG | 0.272998 | 1_4:-68910354 | Msa0180910:three_prime_UTR |
| GTGCCTCTTATTTCTTCTAT+TGG | 0.273115 | 1_4:-68910426 | Msa0180910:CDS |
| GATATAAGACCAGTTGTATT+AGG | 0.280429 | 1_4:+68910870 | None:intergenic |
| CAACATATTCACAATTAAAA+TGG | 0.285708 | 1_4:-68913644 | Msa0180910:CDS |
| CCAATTGGATTGAATATTGA+TGG | 0.296687 | 1_4:+68913540 | None:intergenic |
| AGCTGCCACATTGGCCCATT+GGG | 0.297882 | 1_4:+68913506 | None:intergenic |
| ATTCTGTCATTAGTAGTAAA+TGG | 0.309779 | 1_4:-68913404 | Msa0180910:CDS |
| GTTAGGGAAATTTGGTTTGA+TGG | 0.313655 | 1_4:-68912983 | Msa0180910:CDS |
| GGAGGAAAAGAGGGAGGGTT+TGG | 0.323052 | 1_4:-68910744 | Msa0180910:CDS |
| ATTAGTAGTAAATGGCAAAA+TGG | 0.351247 | 1_4:-68913396 | Msa0180910:CDS |
| AATCGAACATCTCTTTCAAT+TGG | 0.354601 | 1_4:-68912794 | Msa0180910:CDS |
| CAGCTGCCACATTGGCCCAT+TGG | 0.354819 | 1_4:+68913505 | None:intergenic |
| GTGACCATTTGTGGTCATAT+TGG | 0.356144 | 1_4:-68910701 | Msa0180910:CDS |
| CTTTGAGGGTTGAGGGGAAT+GGG | 0.359425 | 1_4:+68913814 | None:intergenic |
| AAATGCAGAATTTGTTTAGT+TGG | 0.366630 | 1_4:+68913715 | None:intergenic |
| AAGAGGCTTCATAGGCTTGA+TGG | 0.370002 | 1_4:-68910501 | Msa0180910:CDS |
| GTAAACCTTGAGTGCCAAAA+AGG | 0.377456 | 1_4:+68910390 | None:intergenic |
| CATGTAACATAGAATTTGAT+TGG | 0.389590 | 1_4:-68910274 | Msa0180910:three_prime_UTR |
| GGGCCTGATGTTAGATGGGT+GGG | 0.402888 | 1_4:-68912860 | Msa0180910:CDS |
| GGGGATGAAACAGGGACTGC+AGG | 0.403401 | 1_4:-68912839 | Msa0180910:CDS |
| TTGGTTACAAGAGGCTTCAT+AGG | 0.408848 | 1_4:-68910509 | Msa0180910:CDS |
| GATAGACATGATTCTAGATA+TGG | 0.419077 | 1_4:-68913294 | Msa0180910:CDS |
| CCATCAATATTCAATCCAAT+TGG | 0.419941 | 1_4:-68913540 | Msa0180910:CDS |
| TGGGTTGTGTTGAGTCCAAT+TGG | 0.421398 | 1_4:+68913525 | None:intergenic |
| ATAATCAAAGGGACAACAAT+TGG | 0.424832 | 1_4:-68910528 | Msa0180910:CDS |
| TTATAGATATCAAGATGTTA+GGG | 0.425767 | 1_4:-68912999 | Msa0180910:intron |
| GAATGTTTAGTGTACTTAGA+TGG | 0.426757 | 1_4:+68913423 | None:intergenic |
| TGGGATCTATCTTTCACCTT+GGG | 0.427910 | 1_4:-68913316 | Msa0180910:CDS |
| ATGCTGGGCCTGATGTTAGA+TGG | 0.428528 | 1_4:-68912865 | Msa0180910:CDS |
| TACATTCAGTGACAGTGAAT+GGG | 0.434150 | 1_4:-68913580 | Msa0180910:CDS |
| GTCAATGCAGCCACTCATAA+AGG | 0.434756 | 1_4:-68913348 | Msa0180910:CDS |
| ATTAGAATGCAAGAAGCAAT+TGG | 0.437522 | 1_4:-68910600 | Msa0180910:CDS |
| TATGTTGGGAGTGGGAGAAT+TGG | 0.437729 | 1_4:+68913660 | None:intergenic |
| TCTTTGAGGGTTGAGGGGAA+TGG | 0.437825 | 1_4:+68913813 | None:intergenic |
| GATATTTATTACAAATCTGT+TGG | 0.439112 | 1_4:-68910924 | Msa0180910:CDS |
| ATATTTATTACAAATCTGTT+GGG | 0.448093 | 1_4:-68910923 | Msa0180910:CDS |
| AGATCACCATGGCTAGACTA+TGG | 0.455049 | 1_4:-68913767 | Msa0180910:exon |
| AATATACCTCCTAATACAAC+TGG | 0.459105 | 1_4:-68910879 | Msa0180910:CDS |
| TAGTAAATGGCAAAATGGTA+AGG | 0.461048 | 1_4:-68913391 | Msa0180910:CDS |
| GCCAATGTGGCAGCTGAAGC+AGG | 0.463082 | 1_4:-68913498 | Msa0180910:CDS |
| TTGGGATCTATCTTTCACCT+TGG | 0.463871 | 1_4:-68913317 | Msa0180910:CDS |
| CACAATTAAAATGGCAACAA+AGG | 0.465362 | 1_4:-68913635 | Msa0180910:CDS |
| ATTGAAATTTGGGGTAATGA+TGG | 0.465626 | 1_4:-68910642 | Msa0180910:CDS |
| CTCATAAAGGAATTGATGTT+GGG | 0.467433 | 1_4:-68913335 | Msa0180910:CDS |
| ATACATTCAGTGACAGTGAA+TGG | 0.468228 | 1_4:-68913581 | Msa0180910:CDS |
| GGCCTGATGTTAGATGGGTG+GGG | 0.474453 | 1_4:-68912859 | Msa0180910:CDS |
| CTGAACACTGGTGATCCAAA+AGG | 0.480861 | 1_4:-68911041 | Msa0180910:CDS |
| ATGAATAGAGCTAAGACAAA+AGG | 0.486840 | 1_4:+68913857 | None:intergenic |
| GACCCCACGGGAAGATGATA+AGG | 0.487059 | 1_4:-68910679 | Msa0180910:CDS |
| GGGTCCAATATGACCACAAA+TGG | 0.488108 | 1_4:+68910697 | None:intergenic |
| TAGCCTGAGAGGAGGAAAAG+AGG | 0.496786 | 1_4:-68910754 | Msa0180910:CDS |
| ACTCATAAAGGAATTGATGT+TGG | 0.497734 | 1_4:-68913336 | Msa0180910:CDS |
| TACCCCAAATTTCAATCCAA+TGG | 0.503170 | 1_4:+68910649 | None:intergenic |
| GTGATCCAAAAGGGACAGAT+TGG | 0.503672 | 1_4:-68911031 | Msa0180910:CDS |
| GATTTATGCCAAAACCATCC+TGG | 0.504854 | 1_4:+68910978 | None:intergenic |
| ACAATTAAAATGGCAACAAA+GGG | 0.509788 | 1_4:-68913634 | Msa0180910:CDS |
| TGCTGGGCCTGATGTTAGAT+GGG | 0.509805 | 1_4:-68912864 | Msa0180910:CDS |
| AATCCAATAGAAGAAATAAG+AGG | 0.511126 | 1_4:+68910423 | None:intergenic |
| TTTCCTTATCATCTTCCCGT+GGG | 0.516315 | 1_4:+68910676 | None:intergenic |
| ATGATAAGGAAAAGGACCAT+TGG | 0.516958 | 1_4:-68910665 | Msa0180910:CDS |
| GGATGAAACAGGGACTGCAG+GGG | 0.521831 | 1_4:-68912837 | Msa0180910:CDS |
| AGAATTGGTAATGGTGGACT+TGG | 0.522348 | 1_4:+68913675 | None:intergenic |
| TGGACTCAACACAACCCAAT+GGG | 0.523022 | 1_4:-68913520 | Msa0180910:CDS |
| TGAACACTGGTGATCCAAAA+GGG | 0.523830 | 1_4:-68911040 | Msa0180910:CDS |
| ATGCAAGAAGCAATTGGACT+TGG | 0.524134 | 1_4:-68910594 | Msa0180910:CDS |
| AGCCTGAGAGGAGGAAAAGA+GGG | 0.526697 | 1_4:-68910753 | Msa0180910:CDS |
| GATGGTAAATCAATAATCAA+AGG | 0.528545 | 1_4:-68910540 | Msa0180910:CDS |
| ACGGGAAGATGATAAGGAAA+AGG | 0.529325 | 1_4:-68910673 | Msa0180910:CDS |
| CGGTATGAAATTTATGTGGA+TGG | 0.530893 | 1_4:-68910558 | Msa0180910:CDS |
| GCCTGATGTTAGATGGGTGG+GGG | 0.535445 | 1_4:-68912858 | Msa0180910:CDS |
| GGGATGAAACAGGGACTGCA+GGG | 0.538975 | 1_4:-68912838 | Msa0180910:CDS |
| ATTAGATTTATAAAAGCTAG+AGG | 0.542281 | 1_4:-68910450 | Msa0180910:CDS |
| TCCTGCTTCAGCTGCCACAT+TGG | 0.544247 | 1_4:+68913497 | None:intergenic |
| ATGGTAAATCAATAATCAAA+GGG | 0.544860 | 1_4:-68910539 | Msa0180910:CDS |
| TGTTGGATAGTGACCATTTG+TGG | 0.550799 | 1_4:-68910710 | Msa0180910:CDS |
| ATGTATTGACACCAAAATGA+AGG | 0.551164 | 1_4:+68913598 | None:intergenic |
| AGTGGGAGAATTGGTAATGG+TGG | 0.551441 | 1_4:+68913669 | None:intergenic |
| ATGTTTCAATTCGTCCAGGA+TGG | 0.551993 | 1_4:-68910992 | Msa0180910:CDS |
| CGAACGGTATGAAATTTATG+TGG | 0.552572 | 1_4:-68910562 | Msa0180910:CDS |
| TGTGATGTTTCAATTCGTCC+AGG | 0.557675 | 1_4:-68910996 | Msa0180910:CDS |
| AATTGTGAATATGTTGGGAG+TGG | 0.561756 | 1_4:+68913651 | None:intergenic |
| AGTAAATGGCAAAATGGTAA+GGG | 0.562737 | 1_4:-68913390 | Msa0180910:CDS |
| TGGGCCTGATGTTAGATGGG+TGG | 0.564890 | 1_4:-68912861 | Msa0180910:CDS |
| AGTGACAGTGAATGGGGCAC+AGG | 0.567340 | 1_4:-68913573 | Msa0180910:CDS |
| ATTGAAACATCACATTCTGC+TGG | 0.577257 | 1_4:+68911005 | None:intergenic |
| TTAACTGCAAAACACCATGA+TGG | 0.579995 | 1_4:-68913459 | Msa0180910:CDS |
| GGACTGCAGGGGACACGTGT+TGG | 0.580171 | 1_4:-68912826 | Msa0180910:CDS |
| AACATCAATTCCTTTATGAG+TGG | 0.581747 | 1_4:+68913338 | None:intergenic |
| GGACAACAATTGGTTACAAG+AGG | 0.582247 | 1_4:-68910518 | Msa0180910:CDS |
| ATTGTGAATATGTTGGGAGT+GGG | 0.592387 | 1_4:+68913652 | None:intergenic |
| GTGGTCATATTGGACCCCAC+GGG | 0.597817 | 1_4:-68910691 | Msa0180910:CDS |
| GTTAAAGTTAGTAGCCTGAG+AGG | 0.598880 | 1_4:-68910765 | Msa0180910:CDS |
| GCCAGAGACAAAATCCATCA+TGG | 0.599754 | 1_4:+68913445 | None:intergenic |
| AGAAAATAAATAATTCTATG+TGG | 0.602104 | 1_4:-68910300 | Msa0180910:three_prime_UTR |
| TGTGGTCATATTGGACCCCA+CGG | 0.603037 | 1_4:-68910692 | Msa0180910:CDS |
| GGGAGTGGGAGAATTGGTAA+TGG | 0.606935 | 1_4:+68913666 | None:intergenic |
| TTGGACTCAACACAACCCAA+TGG | 0.610982 | 1_4:-68913521 | Msa0180910:CDS |
| CTGAGAGGAGGAAAAGAGGG+AGG | 0.617702 | 1_4:-68910750 | Msa0180910:CDS |
| TGATGGAGCAAAAGATCCCA+AGG | 0.618842 | 1_4:-68912966 | Msa0180910:CDS |
| ATAAGACCAGTTGTATTAGG+AGG | 0.619708 | 1_4:+68910873 | None:intergenic |
| AGAACACCATAGTCTAGCCA+TGG | 0.621657 | 1_4:+68913761 | None:intergenic |
| CACAACCCAATGGGCCAATG+TGG | 0.621945 | 1_4:-68913511 | Msa0180910:CDS |
| CTAGAATCATGTCTATCCCA+AGG | 0.622150 | 1_4:+68913300 | None:intergenic |
| GTTTGGTCCAGAAAACATGT+TGG | 0.626617 | 1_4:-68910727 | Msa0180910:CDS |
| ACATTCAGTGACAGTGAATG+GGG | 0.634561 | 1_4:-68913579 | Msa0180910:CDS |
| TGAGAGGAGGAAAAGAGGGA+GGG | 0.637912 | 1_4:-68910749 | Msa0180910:CDS |
| GACCATTGGATTGAAATTTG+GGG | 0.640619 | 1_4:-68910651 | Msa0180910:CDS |
| AAAGTTAGTAGCCTGAGAGG+AGG | 0.643923 | 1_4:-68910762 | Msa0180910:CDS |
| CAATGCAGGTATCTGAACAC+TGG | 0.649417 | 1_4:-68911053 | Msa0180910:intron |
| TTCCTTATCATCTTCCCGTG+GGG | 0.651640 | 1_4:+68910677 | None:intergenic |
| GACTTGGTCAAAGAATCGAA+CGG | 0.716057 | 1_4:-68910578 | Msa0180910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAACTTTTGAT+CGG | + | chr1_4:68911997-68912016 | None:intergenic | 10.0% |
| !! | ATAAATATATTAAAATAGGT+TGG | + | chr1_4:68912427-68912446 | None:intergenic | 10.0% |
| !!! | ATTTTAATTGTGAATATGTT+GGG | + | chr1_4:68910435-68910454 | None:intergenic | 15.0% |
| !!! | CGTAACTTTTATTAAAATTA+TGG | + | chr1_4:68910973-68910992 | None:intergenic | 15.0% |
| !! | CAATAAATTTGATAAAATCA+CGG | + | chr1_4:68911003-68911022 | None:intergenic | 15.0% |
| !!! | TTACATATTATTTTTCAGAT+TGG | - | chr1_4:68911144-68911163 | Msa0180910:intron | 15.0% |
| !! | TGCTTAAAAAAGAAAAATAA+GGG | + | chr1_4:68911335-68911354 | None:intergenic | 15.0% |
| !! | TTGCTTAAAAAAGAAAAATA+AGG | + | chr1_4:68911336-68911355 | None:intergenic | 15.0% |
| !!! | CTATTTTATCATCAATTTTA+GGG | + | chr1_4:68911939-68911958 | None:intergenic | 15.0% |
| !!! | TCTATTTTATCATCAATTTT+AGG | + | chr1_4:68911940-68911959 | None:intergenic | 15.0% |
| !!! | ATTATATTAAACAGTTTTGA+AGG | - | chr1_4:68912038-68912057 | Msa0180910:intron | 15.0% |
| !!! | ACATATTACATTCAATTTTA+AGG | + | chr1_4:68912186-68912205 | None:intergenic | 15.0% |
| !! | TAAAATTGAATGTAATATGT+CGG | - | chr1_4:68912186-68912205 | Msa0180910:intron | 15.0% |
| !!! | ATAAAGTAAACTTTAAAAAG+CGG | + | chr1_4:68912375-68912394 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTTCTTTTTTAG+AGG | - | chr1_4:68912805-68912824 | Msa0180910:CDS | 15.0% |
| !! | AAACTAGTAAAATATTTAGT+GGG | - | chr1_4:68912871-68912890 | Msa0180910:CDS | 15.0% |
| !!! | TTAATATAATTTGTTCATGA+TGG | + | chr1_4:68912939-68912958 | None:intergenic | 15.0% |
| !! | ATATTTATTACAAATCTGTT+GGG | - | chr1_4:68913155-68913174 | Msa0180910:intron | 15.0% |
| !! | AGATAATTATATATTGTTCT+AGG | - | chr1_4:68913724-68913743 | Msa0180910:CDS | 15.0% |
| !! | AGAAAATAAATAATTCTATG+TGG | - | chr1_4:68913778-68913797 | Msa0180910:exon | 15.0% |
| !!! | TCTTGATTGTTTTTTTTGTT+TGG | + | chr1_4:68910294-68910313 | None:intergenic | 20.0% |
| !!! | CATTTTAATTGTGAATATGT+TGG | + | chr1_4:68910436-68910455 | None:intergenic | 20.0% |
| !! | CAACATATTCACAATTAAAA+TGG | - | chr1_4:68910434-68910453 | Msa0180910:CDS | 20.0% |
| !! | GTCAAATTCTTAATTATCAT+TGG | + | chr1_4:68911039-68911058 | None:intergenic | 20.0% |
| !! | ATTATAGATATCAAGATGTT+AGG | - | chr1_4:68911078-68911097 | Msa0180910:intron | 20.0% |
| !! | TTATAGATATCAAGATGTTA+GGG | - | chr1_4:68911079-68911098 | Msa0180910:intron | 20.0% |
| !! | TAATTGAAGACTTAATTAGT+TGG | + | chr1_4:68911718-68911737 | None:intergenic | 20.0% |
| !!! | AACAAAAGGAACTTTATTTT+AGG | - | chr1_4:68911889-68911908 | Msa0180910:intron | 20.0% |
| !! | AAGCAAAAGTAAAATGTATT+TGG | - | chr1_4:68912102-68912121 | Msa0180910:intron | 20.0% |
| !!! | ATCAAATACATTTGACTTTT+TGG | - | chr1_4:68912136-68912155 | Msa0180910:intron | 20.0% |
| !!! | TAAAGTAAACTTTAAAAAGC+GGG | + | chr1_4:68912374-68912393 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGCTATGAAAAAA+TGG | - | chr1_4:68912531-68912550 | Msa0180910:intron | 20.0% |
| !!! | TATAAAAAATAGAGTTTTCG+CGG | - | chr1_4:68912579-68912598 | Msa0180910:intron | 20.0% |
| !!! | TTTTTACCTCTAATATAGTT+TGG | - | chr1_4:68912662-68912681 | Msa0180910:intron | 20.0% |
| !!! | TTTTACCTCTAATATAGTTT+GGG | - | chr1_4:68912663-68912682 | Msa0180910:intron | 20.0% |
| !!! | TTTGGCTTAATTGAATATTT+AGG | + | chr1_4:68912771-68912790 | None:intergenic | 20.0% |
| !! | CAAACTAGTAAAATATTTAG+TGG | - | chr1_4:68912870-68912889 | Msa0180910:CDS | 20.0% |
| !! | GATATTTATTACAAATCTGT+TGG | - | chr1_4:68913154-68913173 | Msa0180910:intron | 20.0% |
| !! | ATGGTAAATCAATAATCAAA+GGG | - | chr1_4:68913539-68913558 | Msa0180910:CDS | 20.0% |
| !! | ATTAGATTTATAAAAGCTAG+AGG | - | chr1_4:68913628-68913647 | Msa0180910:CDS | 20.0% |
| !!! | TTATTTCTTGTATAGATCTT+TGG | - | chr1_4:68913858-68913877 | Msa0180910:five_prime_UTR | 20.0% |
| !!! | TTTTGTTTGGTTTTCTTTGA+GGG | + | chr1_4:68910281-68910300 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTGGTTTTCTTTG+AGG | + | chr1_4:68910282-68910301 | None:intergenic | 25.0% |
| !! | AAATGCAGAATTTGTTTAGT+TGG | + | chr1_4:68910366-68910385 | None:intergenic | 25.0% |
| ! | ACAATTAAAATGGCAACAAA+GGG | - | chr1_4:68910444-68910463 | Msa0180910:CDS | 25.0% |
| !! | ATCATAATGTTCCTTCATTT+TGG | - | chr1_4:68910469-68910488 | Msa0180910:CDS | 25.0% |
| ! | ATTCTGTCATTAGTAGTAAA+TGG | - | chr1_4:68910674-68910693 | Msa0180910:CDS | 25.0% |
| ! | ATTAGTAGTAAATGGCAAAA+TGG | - | chr1_4:68910682-68910701 | Msa0180910:CDS | 25.0% |
| ! | GCTTTACAATGAATACTATT+TGG | - | chr1_4:68910816-68910835 | Msa0180910:CDS | 25.0% |
| ! | CTTAATTATCATTGGATATC+TGG | + | chr1_4:68911031-68911050 | None:intergenic | 25.0% |
| !!! | TTTTTCAGATTGGTTTTCTA+TGG | - | chr1_4:68911154-68911173 | Msa0180910:intron | 25.0% |
| !!! | TGTAGAATAAACCACTTTTT+TGG | + | chr1_4:68911366-68911385 | None:intergenic | 25.0% |
| ! | TTAACATAGCTAGAATGATA+AGG | - | chr1_4:68911416-68911435 | Msa0180910:intron | 25.0% |
| ! | TCCTTTCTAAATCAAAAGTA+AGG | - | chr1_4:68911582-68911601 | Msa0180910:intron | 25.0% |
| !!! | ACCTTACTTTTGATTTAGAA+AGG | + | chr1_4:68911586-68911605 | None:intergenic | 25.0% |
| ! | TTCTAAATCAAAAGTAAGGT+AGG | - | chr1_4:68911586-68911605 | Msa0180910:intron | 25.0% |
| ! | ATCCTAAGCAAAAAAAATGT+GGG | - | chr1_4:68911627-68911646 | Msa0180910:intron | 25.0% |
| ! | TAAGTCCTTCCAAAATTTAA+TGG | - | chr1_4:68911763-68911782 | Msa0180910:intron | 25.0% |
| !! | ACATTTGGACCATTAAATTT+TGG | + | chr1_4:68911775-68911794 | None:intergenic | 25.0% |
| ! | AGCATTCTAACATTAACATT+TGG | + | chr1_4:68911790-68911809 | None:intergenic | 25.0% |
| ! | AAACATGACATCAACAATTA+GGG | - | chr1_4:68911842-68911861 | Msa0180910:intron | 25.0% |
| !!! | GAACTTTATTTTAGGAATTG+AGG | - | chr1_4:68911897-68911916 | Msa0180910:intron | 25.0% |
| !!! | TTATCATCAATTTTAGGGTT+AGG | + | chr1_4:68911934-68911953 | None:intergenic | 25.0% |
| !! | CTTTTGATCGGAATATAAAT+TGG | + | chr1_4:68911985-68912004 | None:intergenic | 25.0% |
| ! | AATTGCATAATCATGATACA+TGG | - | chr1_4:68912282-68912301 | Msa0180910:intron | 25.0% |
| ! | ATTGCATAATCATGATACAT+GGG | - | chr1_4:68912283-68912302 | Msa0180910:intron | 25.0% |
| !! | ATAAAAAATAGAGTTTTCGC+GGG | - | chr1_4:68912580-68912599 | Msa0180910:intron | 25.0% |
| ! | TTTACCTCTAATATAGTTTG+GGG | - | chr1_4:68912664-68912683 | Msa0180910:intron | 25.0% |
| !! | AAAAGTCAACACTACTATTT+TGG | + | chr1_4:68912789-68912808 | None:intergenic | 25.0% |
| ! | AGTAAAATATTTAGTGGGAT+CGG | - | chr1_4:68912876-68912895 | Msa0180910:CDS | 25.0% |
| ! | CAAAAAGCAAAACAAATCAA+CGG | - | chr1_4:68912911-68912930 | Msa0180910:CDS | 25.0% |
| ! | GATGGTAAATCAATAATCAA+AGG | - | chr1_4:68913538-68913557 | Msa0180910:CDS | 25.0% |
| ! | AATCCAATAGAAGAAATAAG+AGG | + | chr1_4:68913658-68913677 | None:intergenic | 25.0% |
| !!! | GATTACATTTTGATCCTTTT+TGG | - | chr1_4:68913674-68913693 | Msa0180910:CDS | 25.0% |
| ! | CATGTAACATAGAATTTGAT+TGG | - | chr1_4:68913804-68913823 | Msa0180910:five_prime_UTR | 25.0% |
| ATGAATAGAGCTAAGACAAA+AGG | + | chr1_4:68910224-68910243 | None:intergenic | 30.0% | |
| AAAAACAATCAAGATCACCA+TGG | - | chr1_4:68910300-68910319 | Msa0180910:three_prime_UTR | 30.0% | |
| CACAATTAAAATGGCAACAA+AGG | - | chr1_4:68910443-68910462 | Msa0180910:CDS | 30.0% | |
| ! | ATGTATTGACACCAAAATGA+AGG | + | chr1_4:68910483-68910502 | None:intergenic | 30.0% |
| CCAATTGGATTGAATATTGA+TGG | + | chr1_4:68910541-68910560 | None:intergenic | 30.0% | |
| CCATCAATATTCAATCCAAT+TGG | - | chr1_4:68910538-68910557 | Msa0180910:CDS | 30.0% | |
| GAATGTTTAGTGTACTTAGA+TGG | + | chr1_4:68910658-68910677 | None:intergenic | 30.0% | |
| TAGTAAATGGCAAAATGGTA+AGG | - | chr1_4:68910687-68910706 | Msa0180910:CDS | 30.0% | |
| AGTAAATGGCAAAATGGTAA+GGG | - | chr1_4:68910688-68910707 | Msa0180910:CDS | 30.0% | |
| AACATCAATTCCTTTATGAG+TGG | + | chr1_4:68910743-68910762 | None:intergenic | 30.0% | |
| ACTCATAAAGGAATTGATGT+TGG | - | chr1_4:68910742-68910761 | Msa0180910:CDS | 30.0% | |
| CTCATAAAGGAATTGATGTT+GGG | - | chr1_4:68910743-68910762 | Msa0180910:CDS | 30.0% | |
| GATAGACATGATTCTAGATA+TGG | - | chr1_4:68910784-68910803 | Msa0180910:CDS | 30.0% | |
| ATCAAGATGTTAGGGAAATT+TGG | - | chr1_4:68911087-68911106 | Msa0180910:intron | 30.0% | |
| ! | TATGTAACATTTTGTGCCTT+GGG | + | chr1_4:68911131-68911150 | None:intergenic | 30.0% |
| ! | ATATGTAACATTTTGTGCCT+TGG | + | chr1_4:68911132-68911151 | None:intergenic | 30.0% |
| ! | ATCAATATTTTCTCAGATGC+TGG | - | chr1_4:68911197-68911216 | Msa0180910:intron | 30.0% |
| ! | TCAATATTTTCTCAGATGCT+GGG | - | chr1_4:68911198-68911217 | Msa0180910:intron | 30.0% |
| TGAAAGAGATGTTCGATTAA+TGG | + | chr1_4:68911282-68911301 | None:intergenic | 30.0% | |
| AATCGAACATCTCTTTCAAT+TGG | - | chr1_4:68911284-68911303 | Msa0180910:intron | 30.0% | |
| ATAGCTAGAATGATAAGGTA+CGG | - | chr1_4:68911421-68911440 | Msa0180910:intron | 30.0% | |
| !!! | CACATTTTTTTTGCTTAGGA+TGG | + | chr1_4:68911628-68911647 | None:intergenic | 30.0% |
| CATCCTAAGCAAAAAAAATG+TGG | - | chr1_4:68911626-68911645 | Msa0180910:intron | 30.0% | |
| !!! | AACCCACATTTTTTTTGCTT+AGG | + | chr1_4:68911632-68911651 | None:intergenic | 30.0% |
| CTTAATTAGTTGGTTGCTTA+GGG | + | chr1_4:68911708-68911727 | None:intergenic | 30.0% | |
| ACTTAATTAGTTGGTTGCTT+AGG | + | chr1_4:68911709-68911728 | None:intergenic | 30.0% | |
| ! | TTGGACCATTAAATTTTGGA+AGG | + | chr1_4:68911771-68911790 | None:intergenic | 30.0% |
| CAAACATGACATCAACAATT+AGG | - | chr1_4:68911841-68911860 | Msa0180910:intron | 30.0% | |
| AAAGAGAGAACACTAACAAA+AGG | - | chr1_4:68911875-68911894 | Msa0180910:intron | 30.0% | |
| GTTATATTTATGACCGAAGA+TGG | - | chr1_4:68912158-68912177 | Msa0180910:intron | 30.0% | |
| !!! | CAATTTTAAGGTACCATCTT+CGG | + | chr1_4:68912174-68912193 | None:intergenic | 30.0% |
| ! | CAATTTTCTTCTCACACATA+TGG | + | chr1_4:68912267-68912286 | None:intergenic | 30.0% |
| TTGCATAATCATGATACATG+GGG | - | chr1_4:68912284-68912303 | Msa0180910:intron | 30.0% | |
| !! | TTAAAATAGGTTGGTGCTTA+TGG | + | chr1_4:68912418-68912437 | None:intergenic | 30.0% |
| !!! | AGTAGCTCACTTAGTTTTTT+TGG | + | chr1_4:68913133-68913152 | None:intergenic | 30.0% |
| AATATACCTCCTAATACAAC+TGG | - | chr1_4:68913199-68913218 | Msa0180910:intron | 30.0% | |
| GATATAAGACCAGTTGTATT+AGG | + | chr1_4:68913211-68913230 | None:intergenic | 30.0% | |
| ! | ATTGAAATTTGGGGTAATGA+TGG | - | chr1_4:68913436-68913455 | Msa0180910:CDS | 30.0% |
| ATTAGAATGCAAGAAGCAAT+TGG | - | chr1_4:68913478-68913497 | Msa0180910:CDS | 30.0% | |
| ATAATCAAAGGGACAACAAT+TGG | - | chr1_4:68913550-68913569 | Msa0180910:CDS | 30.0% | |
| ATTGTGAATATGTTGGGAGT+GGG | + | chr1_4:68910429-68910448 | None:intergenic | 35.0% | |
| AATTGTGAATATGTTGGGAG+TGG | + | chr1_4:68910430-68910449 | None:intergenic | 35.0% | |
| ATACATTCAGTGACAGTGAA+TGG | - | chr1_4:68910497-68910516 | Msa0180910:CDS | 35.0% | |
| TACATTCAGTGACAGTGAAT+GGG | - | chr1_4:68910498-68910517 | Msa0180910:CDS | 35.0% | |
| TTAACTGCAAAACACCATGA+TGG | - | chr1_4:68910619-68910638 | Msa0180910:CDS | 35.0% | |
| !!! | TAAGTGCATGTTTTGATCGA+CGG | - | chr1_4:68910920-68910939 | Msa0180910:CDS | 35.0% |
| CGACGGTAAATTTAGAAGAA+TGG | - | chr1_4:68910937-68910956 | Msa0180910:CDS | 35.0% | |
| !! | GTTAGGGAAATTTGGTTTGA+TGG | - | chr1_4:68911095-68911114 | Msa0180910:intron | 35.0% |
| ACCATAGATTTCAGTGTAAG+TGG | + | chr1_4:68911394-68911413 | None:intergenic | 35.0% | |
| GATTTATGAGACAACGAGTT+TGG | + | chr1_4:68911656-68911675 | None:intergenic | 35.0% | |
| CATATGGCTGGAAATAGTTT+AGG | + | chr1_4:68912251-68912270 | None:intergenic | 35.0% | |
| ! | TAAACTTTAAAAAGCGGGTG+CGG | + | chr1_4:68912369-68912388 | None:intergenic | 35.0% |
| ! | ACTAGTTTGATACACACATG+AGG | + | chr1_4:68912859-68912878 | None:intergenic | 35.0% |
| ATTCATGCTAATCACAATGC+AGG | - | chr1_4:68913011-68913030 | Msa0180910:intron | 35.0% | |
| ATTGAAACATCACATTCTGC+TGG | + | chr1_4:68913076-68913095 | None:intergenic | 35.0% | |
| ATAAGACCAGTTGTATTAGG+AGG | + | chr1_4:68913208-68913227 | None:intergenic | 35.0% | |
| ! | TCACTATCCAACATGTTTTC+TGG | + | chr1_4:68913361-68913380 | None:intergenic | 35.0% |
| ATGATAAGGAAAAGGACCAT+TGG | - | chr1_4:68913413-68913432 | Msa0180910:CDS | 35.0% | |
| AGGACCATTGGATTGAAATT+TGG | - | chr1_4:68913425-68913444 | Msa0180910:CDS | 35.0% | |
| GGACCATTGGATTGAAATTT+GGG | - | chr1_4:68913426-68913445 | Msa0180910:CDS | 35.0% | |
| GACCATTGGATTGAAATTTG+GGG | - | chr1_4:68913427-68913446 | Msa0180910:CDS | 35.0% | |
| TACCCCAAATTTCAATCCAA+TGG | + | chr1_4:68913432-68913451 | None:intergenic | 35.0% | |
| CGAACGGTATGAAATTTATG+TGG | - | chr1_4:68913516-68913535 | Msa0180910:CDS | 35.0% | |
| CGGTATGAAATTTATGTGGA+TGG | - | chr1_4:68913520-68913539 | Msa0180910:CDS | 35.0% | |
| ! | GTGCCTCTTATTTCTTCTAT+TGG | - | chr1_4:68913652-68913671 | Msa0180910:CDS | 35.0% |
| !! | TGGTTTTCTTTGAGGGTTGA+GGG | + | chr1_4:68910274-68910293 | None:intergenic | 40.0% |
| !! | TTGGTTTTCTTTGAGGGTTG+AGG | + | chr1_4:68910275-68910294 | None:intergenic | 40.0% |
| !! | AGAATTGGTAATGGTGGACT+TGG | + | chr1_4:68910406-68910425 | None:intergenic | 40.0% |
| ACATTCAGTGACAGTGAATG+GGG | - | chr1_4:68910499-68910518 | Msa0180910:CDS | 40.0% | |
| !!! | ACCATGATGGATTTTGTCTC+TGG | - | chr1_4:68910632-68910651 | Msa0180910:CDS | 40.0% |
| TTGGGATCTATCTTTCACCT+TGG | - | chr1_4:68910761-68910780 | Msa0180910:CDS | 40.0% | |
| TGGGATCTATCTTTCACCTT+GGG | - | chr1_4:68910762-68910781 | Msa0180910:CDS | 40.0% | |
| CTAGAATCATGTCTATCCCA+AGG | + | chr1_4:68910781-68910800 | None:intergenic | 40.0% | |
| ! | GCAAAAGCATGCCAAAAAAG+TGG | - | chr1_4:68911352-68911371 | Msa0180910:intron | 40.0% |
| GCCACTTACACTGAAATCTA+TGG | - | chr1_4:68911390-68911409 | Msa0180910:intron | 40.0% | |
| TGATCTCCACTCAGATCAAA+AGG | - | chr1_4:68911517-68911536 | Msa0180910:intron | 40.0% | |
| ! | CTCTTTCCTTTTGATCTGAG+TGG | + | chr1_4:68911526-68911545 | None:intergenic | 40.0% |
| AGAATGCTAAGCTAGATGTG+AGG | - | chr1_4:68911802-68911821 | Msa0180910:intron | 40.0% | |
| AATATGTCGGTCTCATGCTA+AGG | - | chr1_4:68912199-68912218 | Msa0180910:intron | 40.0% | |
| CTCATGCTAAGGTCAAACTT+AGG | - | chr1_4:68912210-68912229 | Msa0180910:intron | 40.0% | |
| TTTCTTCTCACACATATGGC+TGG | + | chr1_4:68912263-68912282 | None:intergenic | 40.0% | |
| ATGATACATGGGGATAGACT+TGG | - | chr1_4:68912294-68912313 | Msa0180910:intron | 40.0% | |
| ! | AAACTTTAAAAAGCGGGTGC+GGG | + | chr1_4:68912368-68912387 | None:intergenic | 40.0% |
| ! | AAAAATAGAGTTTTCGCGGG+TGG | - | chr1_4:68912583-68912602 | Msa0180910:intron | 40.0% |
| CCTCTAATATAGTTTGGGGA+CGG | - | chr1_4:68912668-68912687 | Msa0180910:intron | 40.0% | |
| GAATATTTAGGTCCCCATGT+AGG | + | chr1_4:68912759-68912778 | None:intergenic | 40.0% | |
| TGAACACTGGTGATCCAAAA+GGG | - | chr1_4:68913038-68913057 | Msa0180910:intron | 40.0% | |
| TGTGATGTTTCAATTCGTCC+AGG | - | chr1_4:68913082-68913101 | Msa0180910:intron | 40.0% | |
| ATGTTTCAATTCGTCCAGGA+TGG | - | chr1_4:68913086-68913105 | Msa0180910:intron | 40.0% | |
| GATTTATGCCAAAACCATCC+TGG | + | chr1_4:68913103-68913122 | None:intergenic | 40.0% | |
| GTTAAAGTTAGTAGCCTGAG+AGG | - | chr1_4:68913313-68913332 | Msa0180910:CDS | 40.0% | |
| GTTTGGTCCAGAAAACATGT+TGG | - | chr1_4:68913351-68913370 | Msa0180910:CDS | 40.0% | |
| TGTTGGATAGTGACCATTTG+TGG | - | chr1_4:68913368-68913387 | Msa0180910:CDS | 40.0% | |
| GTGACCATTTGTGGTCATAT+TGG | - | chr1_4:68913377-68913396 | Msa0180910:CDS | 40.0% | |
| TTTCCTTATCATCTTCCCGT+GGG | + | chr1_4:68913405-68913424 | None:intergenic | 40.0% | |
| ! | TTTTCCTTATCATCTTCCCG+TGG | + | chr1_4:68913406-68913425 | None:intergenic | 40.0% |
| ACGGGAAGATGATAAGGAAA+AGG | - | chr1_4:68913405-68913424 | Msa0180910:CDS | 40.0% | |
| ATGCAAGAAGCAATTGGACT+TGG | - | chr1_4:68913484-68913503 | Msa0180910:CDS | 40.0% | |
| ! | GACTTGGTCAAAGAATCGAA+CGG | - | chr1_4:68913500-68913519 | Msa0180910:CDS | 40.0% |
| GGACAACAATTGGTTACAAG+AGG | - | chr1_4:68913560-68913579 | Msa0180910:CDS | 40.0% | |
| TTGGTTACAAGAGGCTTCAT+AGG | - | chr1_4:68913569-68913588 | Msa0180910:CDS | 40.0% | |
| !! | TTGATCCTTTTTGGCACTCA+AGG | - | chr1_4:68913683-68913702 | Msa0180910:CDS | 40.0% |
| GTAAACCTTGAGTGCCAAAA+AGG | + | chr1_4:68913691-68913710 | None:intergenic | 40.0% | |
| !! | GGTTTTCTTTGAGGGTTGAG+GGG | + | chr1_4:68910273-68910292 | None:intergenic | 45.0% |
| AGATCACCATGGCTAGACTA+TGG | - | chr1_4:68910311-68910330 | Msa0180910:three_prime_UTR | 45.0% | |
| AGAACACCATAGTCTAGCCA+TGG | + | chr1_4:68910320-68910339 | None:intergenic | 45.0% | |
| !! | AGTGGGAGAATTGGTAATGG+TGG | + | chr1_4:68910412-68910431 | None:intergenic | 45.0% |
| TATGTTGGGAGTGGGAGAAT+TGG | + | chr1_4:68910421-68910440 | None:intergenic | 45.0% | |
| TGGGTTGTGTTGAGTCCAAT+TGG | + | chr1_4:68910556-68910575 | None:intergenic | 45.0% | |
| TTGGACTCAACACAACCCAA+TGG | - | chr1_4:68910557-68910576 | Msa0180910:CDS | 45.0% | |
| TGGACTCAACACAACCCAAT+GGG | - | chr1_4:68910558-68910577 | Msa0180910:CDS | 45.0% | |
| GCCAGAGACAAAATCCATCA+TGG | + | chr1_4:68910636-68910655 | None:intergenic | 45.0% | |
| GTCAATGCAGCCACTCATAA+AGG | - | chr1_4:68910730-68910749 | Msa0180910:CDS | 45.0% | |
| TGATGGAGCAAAAGATCCCA+AGG | - | chr1_4:68911112-68911131 | Msa0180910:intron | 45.0% | |
| ! | AACTTTAAAAAGCGGGTGCG+GGG | + | chr1_4:68912367-68912386 | None:intergenic | 45.0% |
| CCGTCCCCAAACTATATTAG+AGG | + | chr1_4:68912671-68912690 | None:intergenic | 45.0% | |
| ATATAGTTTGGGGACGGAGA+CGG | - | chr1_4:68912674-68912693 | Msa0180910:intron | 45.0% | |
| CAATGCAGGTATCTGAACAC+TGG | - | chr1_4:68913025-68913044 | Msa0180910:intron | 45.0% | |
| CTGAACACTGGTGATCCAAA+AGG | - | chr1_4:68913037-68913056 | Msa0180910:intron | 45.0% | |
| GTGATCCAAAAGGGACAGAT+TGG | - | chr1_4:68913047-68913066 | Msa0180910:intron | 45.0% | |
| ! | CAATTCGTCCAGGATGGTTT+TGG | - | chr1_4:68913092-68913111 | Msa0180910:intron | 45.0% |
| AAAGTTAGTAGCCTGAGAGG+AGG | - | chr1_4:68913316-68913335 | Msa0180910:CDS | 45.0% | |
| GGGTCCAATATGACCACAAA+TGG | + | chr1_4:68913384-68913403 | None:intergenic | 45.0% | |
| TTCCTTATCATCTTCCCGTG+GGG | + | chr1_4:68913404-68913423 | None:intergenic | 45.0% | |
| AAGAGGCTTCATAGGCTTGA+TGG | - | chr1_4:68913577-68913596 | Msa0180910:CDS | 45.0% | |
| !! | AGTAATAAATATATTAAAAT+AGG | + | chr1_4:68912431-68912450 | None:intergenic | 5.0% |
| !! | AAGTATAATAAAAATATTAT+AGG | + | chr1_4:68912978-68912997 | None:intergenic | 5.0% |
| !!! | ATATTTTTATTATACTTTTT+AGG | - | chr1_4:68912981-68913000 | Msa0180910:CDS | 5.0% |
| ! | CTTTGAGGGTTGAGGGGAAT+GGG | + | chr1_4:68910267-68910286 | None:intergenic | 50.0% |
| ! | TCTTTGAGGGTTGAGGGGAA+TGG | + | chr1_4:68910268-68910287 | None:intergenic | 50.0% |
| GGGAGTGGGAGAATTGGTAA+TGG | + | chr1_4:68910415-68910434 | None:intergenic | 50.0% | |
| ATGCTGGGCCTGATGTTAGA+TGG | - | chr1_4:68911213-68911232 | Msa0180910:intron | 50.0% | |
| TGCTGGGCCTGATGTTAGAT+GGG | - | chr1_4:68911214-68911233 | Msa0180910:intron | 50.0% | |
| ! | AATAGAGTTTTCGCGGGTGG+AGG | - | chr1_4:68912586-68912605 | Msa0180910:intron | 50.0% |
| TATAGTTTGGGGACGGAGAC+GGG | - | chr1_4:68912675-68912694 | Msa0180910:intron | 50.0% | |
| CGGGGACAAGTACATAGAAG+CGG | - | chr1_4:68912694-68912713 | Msa0180910:intron | 50.0% | |
| GGGGACAAGTACATAGAAGC+GGG | - | chr1_4:68912695-68912714 | Msa0180910:intron | 50.0% | |
| GGGACAAGTACATAGAAGCG+GGG | - | chr1_4:68912696-68912715 | Msa0180910:intron | 50.0% | |
| TTTAGGTCCCCATGTAGGCA+TGG | + | chr1_4:68912754-68912773 | None:intergenic | 50.0% | |
| ACACATGAGGAACACGCAGA+GGG | + | chr1_4:68912846-68912865 | None:intergenic | 50.0% | |
| ! | GGTAGCCAATCTGTCCCTTT+TGG | + | chr1_4:68913055-68913074 | None:intergenic | 50.0% |
| TAGCCTGAGAGGAGGAAAAG+AGG | - | chr1_4:68913324-68913343 | Msa0180910:CDS | 50.0% | |
| AGCCTGAGAGGAGGAAAAGA+GGG | - | chr1_4:68913325-68913344 | Msa0180910:CDS | 50.0% | |
| TGAGAGGAGGAAAAGAGGGA+GGG | - | chr1_4:68913329-68913348 | Msa0180910:CDS | 50.0% | |
| TGTGGTCATATTGGACCCCA+CGG | - | chr1_4:68913386-68913405 | Msa0180910:CDS | 50.0% | |
| AGTGACAGTGAATGGGGCAC+AGG | - | chr1_4:68910505-68910524 | Msa0180910:CDS | 55.0% | |
| CACAACCCAATGGGCCAATG+TGG | - | chr1_4:68910567-68910586 | Msa0180910:CDS | 55.0% | |
| AGCTGCCACATTGGCCCATT+GGG | + | chr1_4:68910575-68910594 | None:intergenic | 55.0% | |
| TCCTGCTTCAGCTGCCACAT+TGG | + | chr1_4:68910584-68910603 | None:intergenic | 55.0% | |
| TGGGCCTGATGTTAGATGGG+TGG | - | chr1_4:68911217-68911236 | Msa0180910:intron | 55.0% | |
| GGGCCTGATGTTAGATGGGT+GGG | - | chr1_4:68911218-68911237 | Msa0180910:intron | 55.0% | |
| GGCCTGATGTTAGATGGGTG+GGG | - | chr1_4:68911219-68911238 | Msa0180910:intron | 55.0% | |
| GCCTGATGTTAGATGGGTGG+GGG | - | chr1_4:68911220-68911239 | Msa0180910:intron | 55.0% | |
| TCCCCCACCCATCTAACATC+AGG | + | chr1_4:68911224-68911243 | None:intergenic | 55.0% | |
| AGATGGGTGGGGGATGAAAC+AGG | - | chr1_4:68911230-68911249 | Msa0180910:intron | 55.0% | |
| GATGGGTGGGGGATGAAACA+GGG | - | chr1_4:68911231-68911250 | Msa0180910:intron | 55.0% | |
| GGGATGAAACAGGGACTGCA+GGG | - | chr1_4:68911240-68911259 | Msa0180910:intron | 55.0% | |
| GGATGAAACAGGGACTGCAG+GGG | - | chr1_4:68911241-68911260 | Msa0180910:intron | 55.0% | |
| TTAAAAAGCGGGTGCGGGGT+GGG | + | chr1_4:68912363-68912382 | None:intergenic | 55.0% | |
| TTTAAAAAGCGGGTGCGGGG+TGG | + | chr1_4:68912364-68912383 | None:intergenic | 55.0% | |
| ATAGTTTGGGGACGGAGACG+GGG | - | chr1_4:68912676-68912695 | Msa0180910:intron | 55.0% | |
| TCCCCATGTAGGCATGGCAA+CGG | + | chr1_4:68912748-68912767 | None:intergenic | 55.0% | |
| CACACATGAGGAACACGCAG+AGG | + | chr1_4:68912847-68912866 | None:intergenic | 55.0% | |
| ! | CTCCCTCTTTTCCTCCTCTC+AGG | + | chr1_4:68913330-68913349 | None:intergenic | 55.0% |
| CTGAGAGGAGGAAAAGAGGG+AGG | - | chr1_4:68913328-68913347 | Msa0180910:CDS | 55.0% | |
| GGAGGAAAAGAGGGAGGGTT+TGG | - | chr1_4:68913334-68913353 | Msa0180910:CDS | 55.0% | |
| GTGGTCATATTGGACCCCAC+GGG | - | chr1_4:68913387-68913406 | Msa0180910:CDS | 55.0% | |
| GACCCCACGGGAAGATGATA+AGG | - | chr1_4:68913399-68913418 | Msa0180910:CDS | 55.0% | |
| CAGCTGCCACATTGGCCCAT+TGG | + | chr1_4:68910576-68910595 | None:intergenic | 60.0% | |
| GCCAATGTGGCAGCTGAAGC+AGG | - | chr1_4:68910580-68910599 | Msa0180910:CDS | 60.0% | |
| GGGGATGAAACAGGGACTGC+AGG | - | chr1_4:68911239-68911258 | Msa0180910:intron | 60.0% | |
| ! | AGTTTTCGCGGGTGGAGGCA+GGG | - | chr1_4:68912591-68912610 | Msa0180910:intron | 60.0% |
| ATGTAGGCATGGCAACGGGG+CGG | + | chr1_4:68912743-68912762 | None:intergenic | 60.0% | |
| CCCATGTAGGCATGGCAACG+GGG | + | chr1_4:68912746-68912765 | None:intergenic | 60.0% | |
| CCCCGTTGCCATGCCTACAT+GGG | - | chr1_4:68912743-68912762 | Msa0180910:intron | 60.0% | |
| CCCCATGTAGGCATGGCAAC+GGG | + | chr1_4:68912747-68912766 | None:intergenic | 60.0% | |
| CCCGTTGCCATGCCTACATG+GGG | - | chr1_4:68912744-68912763 | Msa0180910:intron | 60.0% | |
| GGACTGCAGGGGACACGTGT+TGG | - | chr1_4:68911252-68911271 | Msa0180910:intron | 65.0% | |
| ! | GAGTTTTCGCGGGTGGAGGC+AGG | - | chr1_4:68912590-68912609 | Msa0180910:intron | 65.0% |
| ACCGGGAGACCCGTTCCCAT+TGG | - | chr1_4:68912619-68912638 | Msa0180910:intron | 65.0% | |
| CCCAATGGGAACGGGTCTCC+CGG | + | chr1_4:68912623-68912642 | None:intergenic | 65.0% | |
| CCGGGAGACCCGTTCCCATT+GGG | - | chr1_4:68912620-68912639 | Msa0180910:intron | 65.0% | |
| CGGGAGACCCGTTCCCATTG+GGG | - | chr1_4:68912621-68912640 | Msa0180910:intron | 65.0% | |
| GGGAGACCCGTTCCCATTGG+GGG | - | chr1_4:68912622-68912641 | Msa0180910:intron | 65.0% | |
| AGACCCGTTCCCATTGGGGG+CGG | - | chr1_4:68912625-68912644 | Msa0180910:intron | 65.0% | |
| AACCCCGCCCCCAATGGGAA+CGG | + | chr1_4:68912632-68912651 | None:intergenic | 65.0% | |
| CACTCAACCCCGCCCCCAAT+GGG | + | chr1_4:68912637-68912656 | None:intergenic | 65.0% | |
| ACACTCAACCCCGCCCCCAA+TGG | + | chr1_4:68912638-68912657 | None:intergenic | 65.0% | |
| TGTAGGCATGGCAACGGGGC+GGG | + | chr1_4:68912742-68912761 | None:intergenic | 65.0% | |
| GCCCCGTTGCCATGCCTACA+TGG | - | chr1_4:68912742-68912761 | Msa0180910:intron | 65.0% | |
| !! | TGCGGGGCGGGTTTTGTGGC+GGG | + | chr1_4:68912334-68912353 | None:intergenic | 70.0% |
| !! | GTGCGGGGCGGGTTTTGTGG+CGG | + | chr1_4:68912335-68912354 | None:intergenic | 70.0% |
| !! | TGGGTGCGGGGCGGGTTTTG+TGG | + | chr1_4:68912338-68912357 | None:intergenic | 70.0% |
| GGGAACGGGTCTCCCGGTCT+CGG | + | chr1_4:68912617-68912636 | None:intergenic | 70.0% | |
| GACCCGTTCCCATTGGGGGC+GGG | - | chr1_4:68912626-68912645 | Msa0180910:intron | 70.0% | |
| ACCCGTTCCCATTGGGGGCG+GGG | - | chr1_4:68912627-68912646 | Msa0180910:intron | 70.0% | |
| ACCCCGCCCCCAATGGGAAC+GGG | + | chr1_4:68912631-68912650 | None:intergenic | 70.0% | |
| !! | GGCGGGTTTTGTGGCGGGGG+CGG | + | chr1_4:68912329-68912348 | None:intergenic | 75.0% |
| !! | CGGGGCGGGTTTTGTGGCGG+GGG | + | chr1_4:68912332-68912351 | None:intergenic | 75.0% |
| !! | GCGGGGCGGGTTTTGTGGCG+GGG | + | chr1_4:68912333-68912352 | None:intergenic | 75.0% |
| GGTGGAGGCAGGGCCGAGAC+CGG | - | chr1_4:68912601-68912620 | Msa0180910:intron | 75.0% | |
| GTGGAGGCAGGGCCGAGACC+GGG | - | chr1_4:68912602-68912621 | Msa0180910:intron | 75.0% | |
| CATGGCAACGGGGCGGGTCG+GGG | + | chr1_4:68912736-68912755 | None:intergenic | 75.0% | |
| GCATGGCAACGGGGCGGGTC+GGG | + | chr1_4:68912737-68912756 | None:intergenic | 75.0% | |
| GGCATGGCAACGGGGCGGGT+CGG | + | chr1_4:68912738-68912757 | None:intergenic | 75.0% | |
| ! | TGCGGGGTGGGCGTGGGTGC+GGG | + | chr1_4:68912351-68912370 | None:intergenic | 80.0% |
| ! | GTGCGGGGTGGGCGTGGGTG+CGG | + | chr1_4:68912352-68912371 | None:intergenic | 80.0% |
| ! | AGCGGGTGCGGGGTGGGCGT+GGG | + | chr1_4:68912357-68912376 | None:intergenic | 80.0% |
| ! | AAGCGGGTGCGGGGTGGGCG+TGG | + | chr1_4:68912358-68912377 | None:intergenic | 80.0% |
| ! | CAACGGGGCGGGTCGGGGAC+GGG | + | chr1_4:68912731-68912750 | None:intergenic | 80.0% |
| ! | GCAACGGGGCGGGTCGGGGA+CGG | + | chr1_4:68912732-68912751 | None:intergenic | 80.0% |
| ! | GGTGGGCGTGGGTGCGGGGC+GGG | + | chr1_4:68912346-68912365 | None:intergenic | 85.0% |
| ! | GGGTGGGCGTGGGTGCGGGG+CGG | + | chr1_4:68912347-68912366 | None:intergenic | 85.0% |
| ! | GCGGGGTGGGCGTGGGTGCG+GGG | + | chr1_4:68912350-68912369 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 68910146 | 68913954 | 68910146 | ID=Msa0180910;Name=Msa0180910 |
| chr1_4 | mRNA | 68910146 | 68913954 | 68910146 | ID=Msa0180910-mRNA-1;Parent=Msa0180910;Name=Msa0180910-mRNA-1;_AED=0.15;_eAED=0.15;_QI=173|1|1|1|1|1|3|234|490 |
| chr1_4 | exon | 68910146 | 68911067 | 68910146 | ID=Msa0180910-mRNA-1:exon:22903;Parent=Msa0180910-mRNA-1 |
| chr1_4 | exon | 68912776 | 68913015 | 68912776 | ID=Msa0180910-mRNA-1:exon:22902;Parent=Msa0180910-mRNA-1 |
| chr1_4 | exon | 68913237 | 68913954 | 68913237 | ID=Msa0180910-mRNA-1:exon:22901;Parent=Msa0180910-mRNA-1 |
| chr1_4 | five_prime_UTR | 68913782 | 68913954 | 68913782 | ID=Msa0180910-mRNA-1:five_prime_utr;Parent=Msa0180910-mRNA-1 |
| chr1_4 | CDS | 68913237 | 68913781 | 68913237 | ID=Msa0180910-mRNA-1:cds;Parent=Msa0180910-mRNA-1 |
| chr1_4 | CDS | 68912776 | 68913015 | 68912776 | ID=Msa0180910-mRNA-1:cds;Parent=Msa0180910-mRNA-1 |
| chr1_4 | CDS | 68910380 | 68911067 | 68910380 | ID=Msa0180910-mRNA-1:cds;Parent=Msa0180910-mRNA-1 |
| chr1_4 | three_prime_UTR | 68910146 | 68910379 | 68910146 | ID=Msa0180910-mRNA-1:three_prime_utr;Parent=Msa0180910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
