Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181460 | XP_003592260.2 | 94.967 | 457 | 22 | 1 | 1 | 457 | 1 | 456 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181460 | sp|Q5XVA8|Y3905_ARATH | 49.191 | 309 | 145 | 4 | 125 | 432 | 156 | 453 | 4.07e-71 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181460 | G7IES8 | 94.967 | 457 | 22 | 1 | 1 | 457 | 1 | 456 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086760 | Msa0181460 | 0.883046 | 6.249937e-71 | -8.615850e-47 |
| Msa0133510 | Msa0181460 | 0.995866 | 9.383807e-221 | -8.615850e-47 |
| Msa0181460 | Msa0306720 | 0.931536 | 3.264748e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181460 | MtrunA17_Chr1g0203001 | 94.967 | 457 | 22 | 1 | 1 | 457 | 1 | 456 | 0.0 | 854 |
| Msa0181460 | MtrunA17_Chr8g0381341 | 35.258 | 329 | 197 | 4 | 103 | 427 | 313 | 629 | 3.52e-35 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181460 | AT3G49055.1 | 49.191 | 309 | 145 | 4 | 125 | 432 | 156 | 453 | 4.13e-72 | 236 |
| Msa0181460 | AT1G24560.1 | 36.826 | 334 | 194 | 7 | 125 | 453 | 351 | 672 | 4.54e-34 | 135 |
Find 88 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAGGATTGCATTTC+TGG | 0.079330 | 1_4:-69687348 | None:intergenic |
| TCAGAGGTGTAGGGTGAATT+TGG | 0.200366 | 1_4:-69684588 | None:intergenic |
| CATTTCTGGTATCATCCTTT+TGG | 0.244152 | 1_4:-69687334 | None:intergenic |
| CACTCAATTGAGAAGATCTT+TGG | 0.250215 | 1_4:+69686030 | Msa0181460:CDS |
| TGAATCCTTCATTTCAATAA+AGG | 0.255904 | 1_4:+69684761 | Msa0181460:CDS |
| TAAAGGGACATGATCATAAA+AGG | 0.299279 | 1_4:+69685084 | Msa0181460:CDS |
| TTATAAGGAGTTAAGGAAAA+AGG | 0.301417 | 1_4:+69684953 | Msa0181460:CDS |
| CTTGCTTAGGGTTGCTTTGT+TGG | 0.306411 | 1_4:+69685037 | Msa0181460:CDS |
| GGGATATTAATAACTTGCTT+AGG | 0.323686 | 1_4:+69685024 | Msa0181460:CDS |
| AACAAAGGTGGAAAATTATA+AGG | 0.327278 | 1_4:+69684938 | Msa0181460:CDS |
| TGAATCAACGGTGTTGTTAT+TGG | 0.327284 | 1_4:+69684875 | Msa0181460:CDS |
| CTCTGATTCCTCTAGTTGTC+TGG | 0.328896 | 1_4:-69687205 | None:intergenic |
| CAAGTTTAACTGAAGAGAAT+AGG | 0.334464 | 1_4:+69685003 | Msa0181460:CDS |
| GGCATTGGAGAAGAAAATAA+AGG | 0.348101 | 1_4:+69685067 | Msa0181460:CDS |
| CTCAAAACAGTTTCAAAGTA+AGG | 0.362902 | 1_4:-69684645 | None:intergenic |
| GATTGAAGAGCGTGACAAAA+TGG | 0.368630 | 1_4:+69686683 | Msa0181460:CDS |
| TTCTCAATTGAGTGATTTCA+AGG | 0.377950 | 1_4:-69686021 | None:intergenic |
| AATATTGCTACCTCTAGAAT+TGG | 0.380419 | 1_4:+69687306 | Msa0181460:CDS |
| TGAAGTGGAAGTTGTTAGTT+TGG | 0.382314 | 1_4:+69685235 | Msa0181460:CDS |
| GGAATCCTTTATTGAAATGA+AGG | 0.382840 | 1_4:-69684766 | None:intergenic |
| TGGAAAATTATAAGGAGTTA+AGG | 0.385060 | 1_4:+69684946 | Msa0181460:CDS |
| AGAGAGTTTAGAGGGAGAAA+AGG | 0.399871 | 1_4:+69684803 | Msa0181460:CDS |
| GCAGAAAACAAAGGGTGCTT+TGG | 0.404761 | 1_4:+69687047 | Msa0181460:CDS |
| GAAGATCTTTGGAAGAATCT+AGG | 0.411043 | 1_4:+69686041 | Msa0181460:CDS |
| CAGAAGAAGAGGTAGCTAGA+TGG | 0.415692 | 1_4:+69686619 | Msa0181460:CDS |
| CTTTATCTGAATGAAGACTA+TGG | 0.417754 | 1_4:-69684620 | None:intergenic |
| ATGGAAGGAAGCTTGTGAAT+TGG | 0.425674 | 1_4:+69686638 | Msa0181460:CDS |
| TAGAGTAAAAGAGAGTTTAG+AGG | 0.428291 | 1_4:+69684794 | Msa0181460:CDS |
| ATTGTTGAGTTTGTACTGAT+TGG | 0.430495 | 1_4:-69684565 | None:intergenic |
| GGTTGCTTTGTTGGAGAAAG+AGG | 0.435951 | 1_4:+69685046 | Msa0181460:CDS |
| AGCTTGTGAATTGGAAGTTA+AGG | 0.438841 | 1_4:+69686647 | Msa0181460:CDS |
| AGTTTGGATTGCAGAAAGTT+GGG | 0.445362 | 1_4:+69685129 | Msa0181460:CDS |
| AGTTTGTACTGATTGGAAGA+TGG | 0.446181 | 1_4:-69684558 | None:intergenic |
| GGATTGCAGAAAGTTGGGTT+TGG | 0.447142 | 1_4:+69685134 | Msa0181460:CDS |
| AACGGTGTTGTTATTGGAAG+AGG | 0.451228 | 1_4:+69684881 | Msa0181460:CDS |
| AACTCAGCAAACTGCAAAAG+TGG | 0.459010 | 1_4:-69685110 | None:intergenic |
| GGATATTAATAACTTGCTTA+GGG | 0.460080 | 1_4:+69685025 | Msa0181460:CDS |
| AAGTTTAACTGAAGAGAATA+GGG | 0.463002 | 1_4:+69685004 | Msa0181460:CDS |
| ATACACATTTCATTGAAGAA+AGG | 0.468708 | 1_4:-69687361 | None:intergenic |
| TTTGTTTCTCTGTGAGACAC+TGG | 0.481946 | 1_4:-69686397 | None:intergenic |
| CTGATTGGAAGATGGGTGAT+AGG | 0.487601 | 1_4:-69684550 | None:intergenic |
| AAGAGGCAAGGTTAATATCA+AGG | 0.488668 | 1_4:+69684898 | Msa0181460:CDS |
| GAGTTTGGATTGCAGAAAGT+TGG | 0.488938 | 1_4:+69685128 | Msa0181460:CDS |
| AGAAGATAGAGAGAGAATCT+TGG | 0.496215 | 1_4:+69686460 | Msa0181460:CDS |
| TGAACTTCGTCGGCAGATAG+AGG | 0.497803 | 1_4:+69687176 | Msa0181460:CDS |
| CATTATCCTTTCCACTGTTG+AGG | 0.498340 | 1_4:-69685987 | None:intergenic |
| TTTGGATTCATGATGGGAGG+TGG | 0.499288 | 1_4:+69685152 | Msa0181460:CDS |
| AGTTGGGTTTGGATTCATGA+TGG | 0.502092 | 1_4:+69685145 | Msa0181460:CDS |
| GTTTGTACTGATTGGAAGAT+GGG | 0.507092 | 1_4:-69684557 | None:intergenic |
| TGGTAATAATGTGCAATCAA+TGG | 0.508772 | 1_4:+69685172 | Msa0181460:CDS |
| GCATTGGAGAAGAAAATAAA+GGG | 0.508904 | 1_4:+69685068 | Msa0181460:CDS |
| AGAGTAAAAGAGAGTTTAGA+GGG | 0.509789 | 1_4:+69684795 | Msa0181460:CDS |
| AATGGCTGCAATAGCTGCAC+AGG | 0.512276 | 1_4:+69687110 | Msa0181460:CDS |
| TGTGAATTGGAAGTTAAGGC+TGG | 0.515864 | 1_4:+69686651 | Msa0181460:CDS |
| AATCAAAGAAACAGAAGAAG+AGG | 0.521307 | 1_4:+69686608 | Msa0181460:CDS |
| CTAGAATTGGAAATGCCAAA+AGG | 0.523851 | 1_4:+69687319 | Msa0181460:CDS |
| GGGTTTGGATTCATGATGGG+AGG | 0.525505 | 1_4:+69685149 | Msa0181460:CDS |
| GTTGGGTTTGGATTCATGAT+GGG | 0.528280 | 1_4:+69685146 | Msa0181460:CDS |
| TTTGTTGGAGAAAGAGGCAT+TGG | 0.529077 | 1_4:+69685052 | Msa0181460:CDS |
| GTCAGAAACTTCAGAGGTGT+AGG | 0.536212 | 1_4:-69684598 | None:intergenic |
| CAAGAACTGCAGAAAACAAA+GGG | 0.555928 | 1_4:+69687039 | Msa0181460:CDS |
| AGATAGCAGTGAGTGTGAAG+TGG | 0.556533 | 1_4:+69685220 | Msa0181460:CDS |
| AATATCAAGGCTTGCAACTG+AGG | 0.558159 | 1_4:+69684911 | Msa0181460:CDS |
| ATCAAGGCTTGCAACTGAGG+TGG | 0.576214 | 1_4:+69684914 | Msa0181460:CDS |
| AGAAGAGGTAGCTAGATGGA+AGG | 0.576787 | 1_4:+69686623 | Msa0181460:CDS |
| TGTCAGAGAAATAGTTTGTG+AGG | 0.577043 | 1_4:+69684836 | Msa0181460:CDS |
| TGTTGTTATTGGAAGAGGCA+AGG | 0.579247 | 1_4:+69684886 | Msa0181460:CDS |
| AGAAAACAAACTCTACATCA+AGG | 0.582148 | 1_4:+69686433 | Msa0181460:CDS |
| CCAAGGCCTCAACAGTGGAA+AGG | 0.591423 | 1_4:+69685981 | Msa0181460:intron |
| GTAGAGGAGTTGAACTTCGT+CGG | 0.592524 | 1_4:+69687166 | Msa0181460:CDS |
| TGCAACTGAGGTGGAAACAA+AGG | 0.599427 | 1_4:+69684923 | Msa0181460:CDS |
| TTTGGCATTTCCAATTCTAG+AGG | 0.603440 | 1_4:-69687316 | None:intergenic |
| GGAACTAACCAGACAACTAG+AGG | 0.607450 | 1_4:+69687197 | Msa0181460:CDS |
| TGTATTGGATGGAAATGAAG+TGG | 0.608267 | 1_4:+69684680 | Msa0181460:CDS |
| GTTTCTCTGTGAGACACTGG+AGG | 0.609222 | 1_4:-69686394 | None:intergenic |
| TCAGAAACTTCAGAGGTGTA+GGG | 0.615156 | 1_4:-69684597 | None:intergenic |
| AGAGTTAAGTGATGAATCAA+CGG | 0.616622 | 1_4:+69684863 | Msa0181460:CDS |
| GGTGCTTTGGACATATCCAA+TGG | 0.618935 | 1_4:+69687060 | Msa0181460:CDS |
| ATCAATGGATGGTACTTCTG+AGG | 0.620756 | 1_4:+69685187 | Msa0181460:CDS |
| AAGTGAGTCGACGTATATGT+TGG | 0.622198 | 1_4:+69687253 | Msa0181460:CDS |
| AATAATGTGCAATCAATGGA+TGG | 0.631660 | 1_4:+69685176 | Msa0181460:CDS |
| ACAAGAACTGCAGAAAACAA+AGG | 0.632471 | 1_4:+69687038 | Msa0181460:CDS |
| TTGAAGCTAGCTGATAGTAG+AGG | 0.633294 | 1_4:+69687150 | Msa0181460:CDS |
| GTCGACGTATATGTTGGCCA+TGG | 0.640311 | 1_4:+69687259 | Msa0181460:CDS |
| ACTCAAAGAAGAGCTAGCAA+TGG | 0.653656 | 1_4:+69687092 | Msa0181460:CDS |
| AACTGAGGTGGAAACAAAGG+TGG | 0.664974 | 1_4:+69684926 | Msa0181460:CDS |
| ACTATGGTCAGAAACTTCAG+AGG | 0.696124 | 1_4:-69684604 | None:intergenic |
| CTGCACAGGAAGCAGCAGAG+AGG | 0.705056 | 1_4:+69687124 | Msa0181460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAATATATAAACAA+TGG | - | chr1_4:69686793-69686812 | None:intergenic | 10.0% |
| !!! | ATAATTTGTATATAGAACTA+AGG | - | chr1_4:69685275-69685294 | None:intergenic | 15.0% |
| !!! | TAGTTCTATATACAAATTAT+AGG | + | chr1_4:69685275-69685294 | Msa0181460:intron | 15.0% |
| !! | AATATCATAACATTACTTAA+TGG | + | chr1_4:69685694-69685713 | Msa0181460:intron | 15.0% |
| !!! | AAGTATTCTTTTTATAGATA+TGG | - | chr1_4:69686732-69686751 | None:intergenic | 15.0% |
| !! | AGATATAGATTATAGTTTAA+CGG | - | chr1_4:69686976-69686995 | None:intergenic | 15.0% |
| !!! | TCTTATATATGTTACTTATG+TGG | - | chr1_4:69685478-69685497 | None:intergenic | 20.0% |
| !! | TAACGTAATGAGTAAAAAAA+TGG | + | chr1_4:69685514-69685533 | Msa0181460:intron | 20.0% |
| !! | AAGTTAGTTAGTTAGTTATT+TGG | + | chr1_4:69685807-69685826 | Msa0181460:intron | 20.0% |
| !!! | TTAGTCTATTCTGAAATTTA+TGG | + | chr1_4:69685951-69685970 | Msa0181460:intron | 20.0% |
| !! | AAAATAATATCACTATGTGA+TGG | - | chr1_4:69686106-69686125 | None:intergenic | 20.0% |
| !! | GTCATATTTATTGATCAAAT+AGG | - | chr1_4:69686501-69686520 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTCTAACTGTTAA+AGG | + | chr1_4:69686566-69686585 | Msa0181460:intron | 20.0% |
| !! | TGAATATATAAACAATGGAA+AGG | - | chr1_4:69686788-69686807 | None:intergenic | 20.0% |
| !!! | TGACAGTTATTTTTAAAAAG+CGG | + | chr1_4:69686887-69686906 | Msa0181460:intron | 20.0% |
| ! | TTGAGAAAGAAGAGAAAAAT+GGG | + | chr1_4:69684721-69684740 | Msa0181460:CDS | 25.0% |
| ! | TGAATCCTTCATTTCAATAA+AGG | + | chr1_4:69684761-69684780 | Msa0181460:CDS | 25.0% |
| ! | AACAAAGGTGGAAAATTATA+AGG | + | chr1_4:69684938-69684957 | Msa0181460:CDS | 25.0% |
| ! | TGGAAAATTATAAGGAGTTA+AGG | + | chr1_4:69684946-69684965 | Msa0181460:CDS | 25.0% |
| ! | TTATAAGGAGTTAAGGAAAA+AGG | + | chr1_4:69684953-69684972 | Msa0181460:CDS | 25.0% |
| ! | AAGTTTAACTGAAGAGAATA+GGG | + | chr1_4:69685004-69685023 | Msa0181460:CDS | 25.0% |
| !!! | GGATATTAATAACTTGCTTA+GGG | + | chr1_4:69685025-69685044 | Msa0181460:CDS | 25.0% |
| ! | AAGATAAAGCTCAAATTCAA+AGG | - | chr1_4:69685341-69685360 | None:intergenic | 25.0% |
| ! | TTACTTATGTGGTATAAATG+GGG | - | chr1_4:69685467-69685486 | None:intergenic | 25.0% |
| ! | GTTACTTATGTGGTATAAAT+GGG | - | chr1_4:69685468-69685487 | None:intergenic | 25.0% |
| !! | TGTTACTTATGTGGTATAAA+TGG | - | chr1_4:69685469-69685488 | None:intergenic | 25.0% |
| ! | TATCACGTACATTTAACAAA+AGG | + | chr1_4:69685645-69685664 | Msa0181460:intron | 25.0% |
| ! | ATCACGTACATTTAACAAAA+GGG | + | chr1_4:69685646-69685665 | Msa0181460:intron | 25.0% |
| ! | GAAAAAAGAGAGAAACAAAA+AGG | + | chr1_4:69685671-69685690 | Msa0181460:intron | 25.0% |
| !!! | AAATTTATGGTCATTTTCCA+AGG | + | chr1_4:69685964-69685983 | Msa0181460:intron | 25.0% |
| ! | AAAACCAAACTAAATGAACT+CGG | - | chr1_4:69686328-69686347 | None:intergenic | 25.0% |
| !! | CTTTTTATAGATATGGCAAA+AGG | - | chr1_4:69686725-69686744 | None:intergenic | 25.0% |
| !!! | TCATTTTTGTAGTTGAGAAA+AGG | + | chr1_4:69686805-69686824 | Msa0181460:intron | 25.0% |
| !! | CATTTTTGTAGTTGAGAAAA+GGG | + | chr1_4:69686806-69686825 | Msa0181460:intron | 25.0% |
| !! | ATTTTTGTAGTTGAGAAAAG+GGG | + | chr1_4:69686807-69686826 | Msa0181460:intron | 25.0% |
| ! | TTAAAAAGCGGTGATAATAT+AGG | + | chr1_4:69686899-69686918 | Msa0181460:intron | 25.0% |
| ! | ATAGTATGATATGTTCTTAC+TGG | + | chr1_4:69686930-69686949 | Msa0181460:intron | 25.0% |
| ! | TAATGTTTGAATGTTCCATT+AGG | + | chr1_4:69687002-69687021 | Msa0181460:intron | 25.0% |
| !! | TTTGAGTCTTAATTTTCCAT+TGG | - | chr1_4:69687079-69687098 | None:intergenic | 25.0% |
| ! | ATTGTTGAGTTTGTACTGAT+TGG | - | chr1_4:69684568-69684587 | None:intergenic | 30.0% |
| CTTTATCTGAATGAAGACTA+TGG | - | chr1_4:69684623-69684642 | None:intergenic | 30.0% | |
| CTCAAAACAGTTTCAAAGTA+AGG | - | chr1_4:69684648-69684667 | None:intergenic | 30.0% | |
| !!! | AACTGTTTTGAGAGAAAAAC+AGG | + | chr1_4:69684656-69684675 | Msa0181460:CDS | 30.0% |
| GTTGAGAAAGAAGAGAAAAA+TGG | + | chr1_4:69684720-69684739 | Msa0181460:CDS | 30.0% | |
| AGAAAAATGGGATGATGTTA+AGG | + | chr1_4:69684733-69684752 | Msa0181460:CDS | 30.0% | |
| GAAAAATGGGATGATGTTAA+GGG | + | chr1_4:69684734-69684753 | Msa0181460:CDS | 30.0% | |
| GGAATCCTTTATTGAAATGA+AGG | - | chr1_4:69684769-69684788 | None:intergenic | 30.0% | |
| ! | ACTCTCTTTTACTCTAGATA+AGG | - | chr1_4:69684790-69684809 | None:intergenic | 30.0% |
| TAGAGTAAAAGAGAGTTTAG+AGG | + | chr1_4:69684794-69684813 | Msa0181460:CDS | 30.0% | |
| AGAGTAAAAGAGAGTTTAGA+GGG | + | chr1_4:69684795-69684814 | Msa0181460:CDS | 30.0% | |
| AGAGTTAAGTGATGAATCAA+CGG | + | chr1_4:69684863-69684882 | Msa0181460:CDS | 30.0% | |
| CAAGTTTAACTGAAGAGAAT+AGG | + | chr1_4:69685003-69685022 | Msa0181460:CDS | 30.0% | |
| !! | GGGATATTAATAACTTGCTT+AGG | + | chr1_4:69685024-69685043 | Msa0181460:CDS | 30.0% |
| GCATTGGAGAAGAAAATAAA+GGG | + | chr1_4:69685068-69685087 | Msa0181460:CDS | 30.0% | |
| TAAAGGGACATGATCATAAA+AGG | + | chr1_4:69685084-69685103 | Msa0181460:CDS | 30.0% | |
| TGGTAATAATGTGCAATCAA+TGG | + | chr1_4:69685172-69685191 | Msa0181460:CDS | 30.0% | |
| AATAATGTGCAATCAATGGA+TGG | + | chr1_4:69685176-69685195 | Msa0181460:CDS | 30.0% | |
| TTCTATGGAATGTGTGAAAA+GGG | - | chr1_4:69685409-69685428 | None:intergenic | 30.0% | |
| ! | GTACATGTAATGGAACTTAT+AGG | + | chr1_4:69685544-69685563 | Msa0181460:intron | 30.0% |
| TTTCTTGGAAGAAAAAACTC+GGG | - | chr1_4:69685611-69685630 | None:intergenic | 30.0% | |
| CTTTCTTGGAAGAAAAAACT+CGG | - | chr1_4:69685612-69685631 | None:intergenic | 30.0% | |
| ATCATAAGAGAACACTTTCT+TGG | - | chr1_4:69685626-69685645 | None:intergenic | 30.0% | |
| TCACGTACATTTAACAAAAG+GGG | + | chr1_4:69685647-69685666 | Msa0181460:intron | 30.0% | |
| ! | AGAGAAGCTAGTTTCTTATA+TGG | + | chr1_4:69685846-69685865 | Msa0181460:intron | 30.0% |
| ! | TAGAGAGTATGTGTATACAT+AGG | + | chr1_4:69685874-69685893 | Msa0181460:intron | 30.0% |
| TGTAATCTACTTCTTGCAAA+AGG | + | chr1_4:69685928-69685947 | Msa0181460:intron | 30.0% | |
| TTCTCAATTGAGTGATTTCA+AGG | - | chr1_4:69686024-69686043 | None:intergenic | 30.0% | |
| GTGAGTTCAACATAGTTATA+TGG | - | chr1_4:69686075-69686094 | None:intergenic | 30.0% | |
| GCATAATTCATTCATTTGCA+AGG | + | chr1_4:69686137-69686156 | Msa0181460:intron | 30.0% | |
| !!! | GAGTTCATTTAGTTTGGTTT+TGG | + | chr1_4:69686327-69686346 | Msa0181460:intron | 30.0% |
| ATTATTATGAACTTCATGCC+AGG | + | chr1_4:69686357-69686376 | Msa0181460:intron | 30.0% | |
| AGAAAACAAACTCTACATCA+AGG | + | chr1_4:69686433-69686452 | Msa0181460:CDS | 30.0% | |
| AATCAAAGAAACAGAAGAAG+AGG | + | chr1_4:69686608-69686627 | Msa0181460:CDS | 30.0% | |
| CTAGAACTCAATCTAAAAAC+TGG | - | chr1_4:69687285-69687304 | None:intergenic | 30.0% | |
| !! | AATATTGCTACCTCTAGAAT+TGG | + | chr1_4:69687306-69687325 | Msa0181460:CDS | 30.0% |
| !! | GTTTGTACTGATTGGAAGAT+GGG | - | chr1_4:69684560-69684579 | None:intergenic | 35.0% |
| !! | AGTTTGTACTGATTGGAAGA+TGG | - | chr1_4:69684561-69684580 | None:intergenic | 35.0% |
| GAGAGAAAAACAGGATGTAT+TGG | + | chr1_4:69684665-69684684 | Msa0181460:CDS | 35.0% | |
| GAAAAACAGGATGTATTGGA+TGG | + | chr1_4:69684669-69684688 | Msa0181460:CDS | 35.0% | |
| TGTATTGGATGGAAATGAAG+TGG | + | chr1_4:69684680-69684699 | Msa0181460:CDS | 35.0% | |
| ! | TGTCAGAGAAATAGTTTGTG+AGG | + | chr1_4:69684836-69684855 | Msa0181460:CDS | 35.0% |
| !! | TGAATCAACGGTGTTGTTAT+TGG | + | chr1_4:69684875-69684894 | Msa0181460:CDS | 35.0% |
| AAGAGGCAAGGTTAATATCA+AGG | + | chr1_4:69684898-69684917 | Msa0181460:CDS | 35.0% | |
| ! | GGCATTGGAGAAGAAAATAA+AGG | + | chr1_4:69685067-69685086 | Msa0181460:CDS | 35.0% |
| AGTTTGGATTGCAGAAAGTT+GGG | + | chr1_4:69685129-69685148 | Msa0181460:CDS | 35.0% | |
| TGAAGTGGAAGTTGTTAGTT+TGG | + | chr1_4:69685235-69685254 | Msa0181460:CDS | 35.0% | |
| TTTATCTTGTGTCTCGCATA+GGG | + | chr1_4:69685353-69685372 | Msa0181460:intron | 35.0% | |
| CTTCTATGGAATGTGTGAAA+AGG | - | chr1_4:69685410-69685429 | None:intergenic | 35.0% | |
| TTCACACATTCCATAGAAGA+TGG | + | chr1_4:69685411-69685430 | Msa0181460:intron | 35.0% | |
| TCACACATTCCATAGAAGAT+GGG | + | chr1_4:69685412-69685431 | Msa0181460:intron | 35.0% | |
| TTCCATAGAAGATGGGAAAA+TGG | + | chr1_4:69685419-69685438 | Msa0181460:intron | 35.0% | |
| ! | TACCATTTTCCCATCTTCTA+TGG | - | chr1_4:69685424-69685443 | None:intergenic | 35.0% |
| ACTGATAGTAGCAGTATTAC+CGG | + | chr1_4:69685728-69685747 | Msa0181460:intron | 35.0% | |
| !! | ATTACCGGAAGTATTGTGTT+AGG | + | chr1_4:69685743-69685762 | Msa0181460:intron | 35.0% |
| ACATCCTAACACAATACTTC+CGG | - | chr1_4:69685750-69685769 | None:intergenic | 35.0% | |
| CACTCAATTGAGAAGATCTT+TGG | + | chr1_4:69686030-69686049 | Msa0181460:CDS | 35.0% | |
| ! | GAAGATCTTTGGAAGAATCT+AGG | + | chr1_4:69686041-69686060 | Msa0181460:CDS | 35.0% |
| ! | AGCATGAAGCATTTGTGAAA+GGG | - | chr1_4:69686203-69686222 | None:intergenic | 35.0% |
| ! | AAGCATGAAGCATTTGTGAA+AGG | - | chr1_4:69686204-69686223 | None:intergenic | 35.0% |
| ! | CTCGGTATGATTTTGAACTA+TGG | - | chr1_4:69686310-69686329 | None:intergenic | 35.0% |
| CATACCGAGTTCATTTAGTT+TGG | + | chr1_4:69686321-69686340 | Msa0181460:intron | 35.0% | |
| AGAAGATAGAGAGAGAATCT+TGG | + | chr1_4:69686460-69686479 | Msa0181460:CDS | 35.0% | |
| AAAAAGCTAGTGAGAAAGAG+AGG | - | chr1_4:69686544-69686563 | None:intergenic | 35.0% | |
| TGTCTAACTGTTAAAGGTAG+AGG | + | chr1_4:69686572-69686591 | Msa0181460:intron | 35.0% | |
| AGCTTGTGAATTGGAAGTTA+AGG | + | chr1_4:69686647-69686666 | Msa0181460:CDS | 35.0% | |
| GTCACATACTCAATTCTTGT+TGG | - | chr1_4:69686871-69686890 | None:intergenic | 35.0% | |
| TGTTTGAATGTTCCATTAGG+TGG | + | chr1_4:69687005-69687024 | Msa0181460:intron | 35.0% | |
| ACAAGAACTGCAGAAAACAA+AGG | + | chr1_4:69687038-69687057 | Msa0181460:CDS | 35.0% | |
| CAAGAACTGCAGAAAACAAA+GGG | + | chr1_4:69687039-69687058 | Msa0181460:CDS | 35.0% | |
| TTTGGCATTTCCAATTCTAG+AGG | - | chr1_4:69687319-69687338 | None:intergenic | 35.0% | |
| CTAGAATTGGAAATGCCAAA+AGG | + | chr1_4:69687319-69687338 | Msa0181460:CDS | 35.0% | |
| !!! | CATTTCTGGTATCATCCTTT+TGG | - | chr1_4:69687337-69687356 | None:intergenic | 35.0% |
| TGAAGAAAGGATTGCATTTC+TGG | - | chr1_4:69687351-69687370 | None:intergenic | 35.0% | |
| ! | TCAGAAACTTCAGAGGTGTA+GGG | - | chr1_4:69684600-69684619 | None:intergenic | 40.0% |
| ACTATGGTCAGAAACTTCAG+AGG | - | chr1_4:69684607-69684626 | None:intergenic | 40.0% | |
| AGAGAGTTTAGAGGGAGAAA+AGG | + | chr1_4:69684803-69684822 | Msa0181460:CDS | 40.0% | |
| !! | AACGGTGTTGTTATTGGAAG+AGG | + | chr1_4:69684881-69684900 | Msa0181460:CDS | 40.0% |
| ! | TGTTGTTATTGGAAGAGGCA+AGG | + | chr1_4:69684886-69684905 | Msa0181460:CDS | 40.0% |
| AATATCAAGGCTTGCAACTG+AGG | + | chr1_4:69684911-69684930 | Msa0181460:CDS | 40.0% | |
| GAAAAAGGAGAAGAGAGAGT+TGG | + | chr1_4:69684968-69684987 | Msa0181460:CDS | 40.0% | |
| ! | TTTGTTGGAGAAAGAGGCAT+TGG | + | chr1_4:69685052-69685071 | Msa0181460:CDS | 40.0% |
| AACTCAGCAAACTGCAAAAG+TGG | - | chr1_4:69685113-69685132 | None:intergenic | 40.0% | |
| !!! | CTTTTGCAGTTTGCTGAGTT+TGG | + | chr1_4:69685113-69685132 | Msa0181460:CDS | 40.0% |
| GAGTTTGGATTGCAGAAAGT+TGG | + | chr1_4:69685128-69685147 | Msa0181460:CDS | 40.0% | |
| AGTTGGGTTTGGATTCATGA+TGG | + | chr1_4:69685145-69685164 | Msa0181460:CDS | 40.0% | |
| GTTGGGTTTGGATTCATGAT+GGG | + | chr1_4:69685146-69685165 | Msa0181460:CDS | 40.0% | |
| ATCAATGGATGGTACTTCTG+AGG | + | chr1_4:69685187-69685206 | Msa0181460:CDS | 40.0% | |
| CTTTATCTTGTGTCTCGCAT+AGG | + | chr1_4:69685352-69685371 | Msa0181460:intron | 40.0% | |
| GATGGGAAAATGGTACATGT+AGG | + | chr1_4:69685429-69685448 | Msa0181460:intron | 40.0% | |
| TGGCAACACTGTACATGTAA+TGG | + | chr1_4:69685534-69685553 | Msa0181460:intron | 40.0% | |
| CATTATCCTTTCCACTGTTG+AGG | - | chr1_4:69685990-69686009 | None:intergenic | 40.0% | |
| TGCAAGGAAGTGAGTGAAAA+AGG | + | chr1_4:69686153-69686172 | Msa0181460:intron | 40.0% | |
| ! | TTTGTTTCTCTGTGAGACAC+TGG | - | chr1_4:69686400-69686419 | None:intergenic | 40.0% |
| ATGGAAGGAAGCTTGTGAAT+TGG | + | chr1_4:69686638-69686657 | Msa0181460:CDS | 40.0% | |
| TGTGAATTGGAAGTTAAGGC+TGG | + | chr1_4:69686651-69686670 | Msa0181460:CDS | 40.0% | |
| ! | GATTGAAGAGCGTGACAAAA+TGG | + | chr1_4:69686683-69686702 | Msa0181460:CDS | 40.0% |
| ACTCAAAGAAGAGCTAGCAA+TGG | + | chr1_4:69687092-69687111 | Msa0181460:CDS | 40.0% | |
| TTGAAGCTAGCTGATAGTAG+AGG | + | chr1_4:69687150-69687169 | Msa0181460:CDS | 40.0% | |
| AAGTGAGTCGACGTATATGT+TGG | + | chr1_4:69687253-69687272 | Msa0181460:CDS | 40.0% | |
| CTCAATCTAAAAACTGGCCA+TGG | - | chr1_4:69687279-69687298 | None:intergenic | 40.0% | |
| CTGATTGGAAGATGGGTGAT+AGG | - | chr1_4:69684553-69684572 | None:intergenic | 45.0% | |
| ! | TCAGAGGTGTAGGGTGAATT+TGG | - | chr1_4:69684591-69684610 | None:intergenic | 45.0% |
| ! | GTCAGAAACTTCAGAGGTGT+AGG | - | chr1_4:69684601-69684620 | None:intergenic | 45.0% |
| TGCAACTGAGGTGGAAACAA+AGG | + | chr1_4:69684923-69684942 | Msa0181460:CDS | 45.0% | |
| AACTGAGGTGGAAACAAAGG+TGG | + | chr1_4:69684926-69684945 | Msa0181460:CDS | 45.0% | |
| ! | CTTGCTTAGGGTTGCTTTGT+TGG | + | chr1_4:69685037-69685056 | Msa0181460:CDS | 45.0% |
| ! | GGTTGCTTTGTTGGAGAAAG+AGG | + | chr1_4:69685046-69685065 | Msa0181460:CDS | 45.0% |
| GGATTGCAGAAAGTTGGGTT+TGG | + | chr1_4:69685134-69685153 | Msa0181460:CDS | 45.0% | |
| ! | TTTGGATTCATGATGGGAGG+TGG | + | chr1_4:69685152-69685171 | Msa0181460:CDS | 45.0% |
| AGATAGCAGTGAGTGTGAAG+TGG | + | chr1_4:69685220-69685239 | Msa0181460:CDS | 45.0% | |
| ! | TAGGGCATTTAAGCTCCAGT+AGG | + | chr1_4:69685371-69685390 | Msa0181460:intron | 45.0% |
| GGGTAACAATGTACACCTAC+TGG | - | chr1_4:69685389-69685408 | None:intergenic | 45.0% | |
| ! | ATTTTCCAAGGCCTCAACAG+TGG | + | chr1_4:69685976-69685995 | Msa0181460:intron | 45.0% |
| CAGAAGAAGAGGTAGCTAGA+TGG | + | chr1_4:69686619-69686638 | Msa0181460:CDS | 45.0% | |
| AGAAGAGGTAGCTAGATGGA+AGG | + | chr1_4:69686623-69686642 | Msa0181460:CDS | 45.0% | |
| !! | GCAGAAAACAAAGGGTGCTT+TGG | + | chr1_4:69687047-69687066 | Msa0181460:CDS | 45.0% |
| ! | GGTGCTTTGGACATATCCAA+TGG | + | chr1_4:69687060-69687079 | Msa0181460:CDS | 45.0% |
| GTAGAGGAGTTGAACTTCGT+CGG | + | chr1_4:69687166-69687185 | Msa0181460:CDS | 45.0% | |
| GGAACTAACCAGACAACTAG+AGG | + | chr1_4:69687197-69687216 | Msa0181460:CDS | 45.0% | |
| CTCTGATTCCTCTAGTTGTC+TGG | - | chr1_4:69687208-69687227 | None:intergenic | 45.0% | |
| ATCAAGGCTTGCAACTGAGG+TGG | + | chr1_4:69684914-69684933 | Msa0181460:CDS | 50.0% | |
| ! | GGGTTTGGATTCATGATGGG+AGG | + | chr1_4:69685149-69685168 | Msa0181460:CDS | 50.0% |
| GTTTCTCTGTGAGACACTGG+AGG | - | chr1_4:69686397-69686416 | None:intergenic | 50.0% | |
| GTTTCAGTGCAGCCACCTAA+TGG | - | chr1_4:69687020-69687039 | None:intergenic | 50.0% | |
| AATGGCTGCAATAGCTGCAC+AGG | + | chr1_4:69687110-69687129 | Msa0181460:CDS | 50.0% | |
| TGAACTTCGTCGGCAGATAG+AGG | + | chr1_4:69687176-69687195 | Msa0181460:CDS | 50.0% | |
| GTCGACGTATATGTTGGCCA+TGG | + | chr1_4:69687259-69687278 | Msa0181460:CDS | 50.0% | |
| CCTTTCCACTGTTGAGGCCT+TGG | - | chr1_4:69685984-69686003 | None:intergenic | 55.0% | |
| CCAAGGCCTCAACAGTGGAA+AGG | + | chr1_4:69685981-69686000 | Msa0181460:intron | 55.0% | |
| CTGCACAGGAAGCAGCAGAG+AGG | + | chr1_4:69687124-69687143 | Msa0181460:CDS | 60.0% | |
| ! | GAGGCGCTCTGTGTCTGACC+TGG | - | chr1_4:69686378-69686397 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69684540 | 69687374 | 69684540 | ID=Msa0181460;Name=Msa0181460 |
| chr1_4 | mRNA | 69684540 | 69687374 | 69684540 | ID=Msa0181460-mRNA-1;Parent=Msa0181460;Name=Msa0181460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|457 |
| chr1_4 | exon | 69684540 | 69685256 | 69684540 | ID=Msa0181460-mRNA-1:exon:23114;Parent=Msa0181460-mRNA-1 |
| chr1_4 | exon | 69685986 | 69686062 | 69685986 | ID=Msa0181460-mRNA-1:exon:23115;Parent=Msa0181460-mRNA-1 |
| chr1_4 | exon | 69686379 | 69686490 | 69686379 | ID=Msa0181460-mRNA-1:exon:23116;Parent=Msa0181460-mRNA-1 |
| chr1_4 | exon | 69686588 | 69686704 | 69686588 | ID=Msa0181460-mRNA-1:exon:23117;Parent=Msa0181460-mRNA-1 |
| chr1_4 | exon | 69687024 | 69687374 | 69687024 | ID=Msa0181460-mRNA-1:exon:23118;Parent=Msa0181460-mRNA-1 |
| chr1_4 | CDS | 69684540 | 69685256 | 69684540 | ID=Msa0181460-mRNA-1:cds;Parent=Msa0181460-mRNA-1 |
| chr1_4 | CDS | 69685986 | 69686062 | 69685986 | ID=Msa0181460-mRNA-1:cds;Parent=Msa0181460-mRNA-1 |
| chr1_4 | CDS | 69686379 | 69686490 | 69686379 | ID=Msa0181460-mRNA-1:cds;Parent=Msa0181460-mRNA-1 |
| chr1_4 | CDS | 69686588 | 69686704 | 69686588 | ID=Msa0181460-mRNA-1:cds;Parent=Msa0181460-mRNA-1 |
| chr1_4 | CDS | 69687024 | 69687374 | 69687024 | ID=Msa0181460-mRNA-1:cds;Parent=Msa0181460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
