Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181680 | XP_003592212.2 | 85.470 | 702 | 17 | 4 | 1 | 617 | 1 | 702 | 0.0 | 1186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181680 | sp|Q8W110|FRO4_ARATH | 51.695 | 708 | 241 | 11 | 2 | 617 | 1 | 699 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181680 | G7IEN0 | 85.470 | 702 | 17 | 4 | 1 | 617 | 1 | 702 | 0.0 | 1186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038920 | Msa0181680 | 0.808445 | 3.086324e-50 | -8.615850e-47 |
| Msa0181680 | Msa1077590 | 0.803818 | 2.907437e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181680 | MtrunA17_Chr1g0202741 | 85.470 | 702 | 17 | 4 | 1 | 617 | 1 | 702 | 0.0 | 1186 |
| Msa0181680 | MtrunA17_Chr1g0202731 | 76.705 | 704 | 77 | 5 | 1 | 617 | 4 | 707 | 0.0 | 1070 |
| Msa0181680 | MtrunA17_Chr8g0348521 | 48.438 | 704 | 273 | 9 | 1 | 617 | 1 | 701 | 0.0 | 605 |
| Msa0181680 | MtrunA17_Chr8g0348531 | 49.123 | 684 | 256 | 8 | 23 | 617 | 36 | 716 | 0.0 | 604 |
| Msa0181680 | MtrunA17_Chr8g0349071 | 53.618 | 304 | 113 | 5 | 232 | 509 | 2 | 303 | 2.07e-93 | 290 |
| Msa0181680 | MtrunA17_Chr4g0058571 | 29.345 | 702 | 383 | 18 | 1 | 600 | 13 | 703 | 9.48e-88 | 288 |
| Msa0181680 | MtrunA17_Chr2g0291481 | 32.609 | 552 | 328 | 12 | 26 | 539 | 56 | 601 | 4.89e-84 | 278 |
| Msa0181680 | MtrunA17_Chr8g0349061 | 37.857 | 140 | 86 | 1 | 1 | 140 | 1 | 139 | 3.42e-27 | 107 |
| Msa0181680 | MtrunA17_Chr8g0349081 | 53.846 | 91 | 27 | 1 | 542 | 617 | 31 | 121 | 8.79e-25 | 99.8 |
| Msa0181680 | MtrunA17_Chr4g0061441 | 29.469 | 207 | 112 | 5 | 262 | 436 | 473 | 677 | 1.82e-18 | 89.7 |
| Msa0181680 | MtrunA17_Chr8g0385411 | 25.431 | 232 | 120 | 5 | 257 | 437 | 508 | 737 | 1.26e-16 | 84.0 |
| Msa0181680 | MtrunA17_Chr2g0301511 | 27.854 | 219 | 112 | 8 | 260 | 434 | 541 | 757 | 7.30e-16 | 81.6 |
| Msa0181680 | MtrunA17_Chr8g0387591 | 26.389 | 216 | 110 | 6 | 260 | 430 | 552 | 763 | 9.78e-16 | 81.3 |
| Msa0181680 | MtrunA17_Chr3g0131361 | 27.434 | 226 | 104 | 7 | 267 | 437 | 522 | 742 | 1.14e-15 | 80.9 |
| Msa0181680 | MtrunA17_Chr1g0192121 | 23.144 | 229 | 125 | 5 | 258 | 437 | 500 | 726 | 1.75e-15 | 80.5 |
| Msa0181680 | MtrunA17_Chr7g0272591 | 23.963 | 217 | 117 | 4 | 267 | 437 | 524 | 738 | 1.89e-14 | 77.0 |
| Msa0181680 | MtrunA17_Chr3g0131381 | 26.872 | 227 | 114 | 5 | 260 | 437 | 527 | 750 | 2.48e-14 | 76.6 |
| Msa0181680 | MtrunA17_Chr3g0131401 | 23.636 | 220 | 117 | 4 | 267 | 437 | 541 | 758 | 9.23e-14 | 74.7 |
| Msa0181680 | MtrunA17_Chr7g0238371 | 25.258 | 194 | 107 | 6 | 279 | 437 | 506 | 696 | 2.41e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181680 | AT5G23980.1 | 51.695 | 708 | 241 | 11 | 2 | 617 | 1 | 699 | 0.0 | 702 |
| Msa0181680 | AT5G23990.2 | 50.847 | 708 | 247 | 10 | 2 | 617 | 1 | 699 | 0.0 | 694 |
| Msa0181680 | AT1G01580.1 | 46.505 | 701 | 279 | 9 | 10 | 617 | 28 | 725 | 0.0 | 617 |
| Msa0181680 | AT1G01580.2 | 46.220 | 701 | 281 | 8 | 10 | 617 | 106 | 803 | 0.0 | 615 |
| Msa0181680 | AT1G01590.1 | 45.455 | 693 | 291 | 12 | 9 | 617 | 15 | 704 | 0.0 | 604 |
| Msa0181680 | AT1G23020.2 | 45.601 | 682 | 296 | 10 | 9 | 617 | 38 | 717 | 0.0 | 584 |
| Msa0181680 | AT1G23020.1 | 45.601 | 682 | 295 | 11 | 9 | 617 | 38 | 716 | 0.0 | 584 |
| Msa0181680 | AT1G23020.5 | 45.601 | 682 | 295 | 11 | 9 | 617 | 38 | 716 | 0.0 | 584 |
| Msa0181680 | AT1G23020.6 | 45.601 | 682 | 296 | 10 | 9 | 617 | 15 | 694 | 0.0 | 583 |
| Msa0181680 | AT1G23020.4 | 45.601 | 682 | 295 | 11 | 9 | 617 | 15 | 693 | 0.0 | 583 |
| Msa0181680 | AT1G23020.3 | 45.601 | 682 | 295 | 11 | 9 | 617 | 15 | 693 | 0.0 | 583 |
| Msa0181680 | AT1G23020.7 | 45.455 | 682 | 293 | 11 | 9 | 617 | 15 | 690 | 0.0 | 580 |
| Msa0181680 | AT5G23990.3 | 53.058 | 556 | 169 | 6 | 153 | 617 | 13 | 567 | 0.0 | 578 |
| Msa0181680 | AT5G23990.1 | 53.069 | 554 | 168 | 6 | 155 | 617 | 105 | 657 | 0.0 | 573 |
| Msa0181680 | AT5G50160.1 | 32.914 | 556 | 325 | 12 | 18 | 536 | 19 | 563 | 2.19e-94 | 306 |
| Msa0181680 | AT5G49740.3 | 31.889 | 577 | 333 | 15 | 9 | 536 | 35 | 600 | 6.87e-84 | 278 |
| Msa0181680 | AT5G49740.1 | 31.889 | 577 | 333 | 15 | 9 | 536 | 35 | 600 | 1.92e-83 | 277 |
| Msa0181680 | AT5G49740.2 | 33.008 | 512 | 293 | 12 | 9 | 477 | 35 | 539 | 1.76e-81 | 267 |
| Msa0181680 | AT5G49730.1 | 30.890 | 573 | 342 | 12 | 9 | 536 | 28 | 591 | 4.15e-79 | 265 |
| Msa0181680 | AT5G49730.2 | 32.422 | 512 | 294 | 11 | 9 | 477 | 28 | 530 | 1.68e-78 | 259 |
| Msa0181680 | AT5G50160.2 | 34.536 | 388 | 214 | 8 | 185 | 536 | 1 | 384 | 8.73e-71 | 238 |
| Msa0181680 | AT4G25090.1 | 30.000 | 210 | 106 | 7 | 267 | 437 | 484 | 691 | 6.70e-18 | 88.6 |
| Msa0181680 | AT4G25090.2 | 30.000 | 210 | 106 | 7 | 267 | 437 | 472 | 679 | 8.46e-18 | 88.2 |
| Msa0181680 | AT1G19230.1 | 27.803 | 223 | 114 | 9 | 260 | 437 | 536 | 756 | 2.04e-17 | 87.0 |
| Msa0181680 | AT1G19230.2 | 27.803 | 223 | 114 | 9 | 260 | 437 | 562 | 782 | 2.17e-17 | 87.0 |
| Msa0181680 | AT1G09090.2 | 25.877 | 228 | 119 | 7 | 257 | 436 | 465 | 690 | 5.19e-16 | 82.4 |
| Msa0181680 | AT1G64060.1 | 28.111 | 217 | 105 | 8 | 260 | 430 | 558 | 769 | 1.66e-15 | 80.9 |
| Msa0181680 | AT4G11230.1 | 26.141 | 241 | 131 | 6 | 256 | 451 | 539 | 777 | 2.53e-15 | 80.1 |
| Msa0181680 | AT5G47910.1 | 25.339 | 221 | 113 | 7 | 258 | 430 | 543 | 759 | 2.86e-14 | 77.0 |
| Msa0181680 | AT5G51060.1 | 24.424 | 217 | 116 | 4 | 267 | 437 | 531 | 745 | 3.04e-14 | 76.6 |
| Msa0181680 | AT5G07390.1 | 23.697 | 211 | 112 | 4 | 267 | 430 | 522 | 730 | 3.64e-13 | 73.2 |
| Msa0181680 | AT5G07390.2 | 23.697 | 211 | 112 | 4 | 267 | 430 | 490 | 698 | 4.71e-13 | 72.8 |
Find 119 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGCCATAACCAGTTATT+TGG | 0.139470 | 1_4:+69902701 | None:intergenic |
| AGAACTTTCTTCTTCATCTT+TGG | 0.207308 | 1_4:-69903516 | Msa0181680:CDS |
| CAACTAGAAGACACCGTAAA+AGG | 0.252647 | 1_4:+69903608 | None:intergenic |
| CACATTCTGCACAATTTCTA+AGG | 0.259434 | 1_4:-69903457 | Msa0181680:intron |
| TCACCAGGGTCATGGATTTA+TGG | 0.263989 | 1_4:-69901609 | Msa0181680:CDS |
| GGTGTCTTCTAGTTGTAATT+TGG | 0.286944 | 1_4:-69903600 | Msa0181680:CDS |
| ATGGAAGAACCTCTTGTTAC+TGG | 0.310648 | 1_4:+69905968 | None:intergenic |
| CAAGGGCATCACAAGGTAAA+AGG | 0.320473 | 1_4:+69903945 | None:intergenic |
| TCTCCTATCTCAGCTGTATT+AGG | 0.324457 | 1_4:-69902725 | Msa0181680:CDS |
| AACGAGTAACAATTCCTAAA+AGG | 0.325542 | 1_4:+69902642 | None:intergenic |
| TCTCGCCTTCTTTGTGCATA+TGG | 0.327570 | 1_4:+69906637 | None:intergenic |
| TAGAATTTGTGCTTCTGGTT+TGG | 0.336429 | 1_4:-69901268 | Msa0181680:CDS |
| TAACAAGCATTCCACGAATA+AGG | 0.339631 | 1_4:-69904150 | Msa0181680:CDS |
| GTTGCTAGAATTTGTGCTTC+TGG | 0.342401 | 1_4:-69901273 | Msa0181680:CDS |
| CTGGCTTGGACAATTATCTA+TGG | 0.342433 | 1_4:-69905897 | Msa0181680:CDS |
| ATACAAACAAGTAGGAGTTT+TGG | 0.349336 | 1_4:+69902929 | None:intergenic |
| TTCTTGGATGGCTAACAGTT+TGG | 0.352809 | 1_4:-69907235 | Msa0181680:CDS |
| AGGCAAAGATGTTGGAGTTA+TGG | 0.357291 | 1_4:-69901325 | Msa0181680:CDS |
| TGTTTCTGAGTATCTCTTGA+AGG | 0.360719 | 1_4:+69902785 | None:intergenic |
| ACATTCCCTATGATGTTCAT+TGG | 0.361666 | 1_4:-69906992 | Msa0181680:CDS |
| GCTGAAACAATTCCAATTGT+AGG | 0.367850 | 1_4:+69906744 | None:intergenic |
| CAAGCATCAAATATCATATC+TGG | 0.370925 | 1_4:-69905916 | Msa0181680:CDS |
| TAGGCCCAAATAACTGGTTA+TGG | 0.371532 | 1_4:-69902706 | Msa0181680:CDS |
| CTGTATTAGGCCCAAATAAC+TGG | 0.374198 | 1_4:-69902712 | Msa0181680:CDS |
| AGAAACAAATCCAAACTATA+TGG | 0.376017 | 1_4:-69902769 | Msa0181680:CDS |
| AGAGCTCCAATGAACATCAT+AGG | 0.376728 | 1_4:+69906986 | None:intergenic |
| CATTGCAGCTTGGAAACCTT+TGG | 0.378460 | 1_4:+69903635 | None:intergenic |
| GGCGAGATTGTAAGAATCTA+AGG | 0.379884 | 1_4:+69903993 | None:intergenic |
| ATTGAGCTTGATTTCTAGCT+TGG | 0.383594 | 1_4:+69907172 | None:intergenic |
| TTTCCTGAGACGTCCATTCC+TGG | 0.389736 | 1_4:-69906772 | Msa0181680:CDS |
| ATACTATAACCCCACAAGTT+TGG | 0.395633 | 1_4:-69903672 | Msa0181680:CDS |
| CATATGGAGGTGAGCAAAAC+TGG | 0.398421 | 1_4:+69906653 | None:intergenic |
| GTAGATGGGAAGCGAAGTTC+AGG | 0.406799 | 1_4:-69906048 | Msa0181680:intron |
| GAGGTTGAAATTCTTGTTGT+TGG | 0.408231 | 1_4:+69902951 | None:intergenic |
| TCTTCCATTCTACGTCTTGT+TGG | 0.419851 | 1_4:-69905953 | Msa0181680:CDS |
| CAAGCCATAACCAGTTATTT+GGG | 0.427027 | 1_4:+69902702 | None:intergenic |
| TATTGTCTTACTAGGATCCT+TGG | 0.429043 | 1_4:+69903910 | None:intergenic |
| TTCCTGGTCATGCCTACAAT+TGG | 0.433473 | 1_4:-69906756 | Msa0181680:CDS |
| GTGTTTATCTCCATCTTCAT+CGG | 0.438108 | 1_4:-69906958 | Msa0181680:CDS |
| ACATACCTCAACCATTTGAT+TGG | 0.438129 | 1_4:+69905826 | None:intergenic |
| CATCTTAATGTCTCCGTTGA+AGG | 0.445177 | 1_4:-69903491 | Msa0181680:CDS |
| TGTTTATCTCCATCTTCATC+GGG | 0.445261 | 1_4:-69906957 | Msa0181680:CDS |
| CATGACCCTGGTGATCTTGT+TGG | 0.446030 | 1_4:+69901618 | None:intergenic |
| TACAATCTCGCCAACATGCT+TGG | 0.452032 | 1_4:-69903982 | Msa0181680:CDS |
| GAAATTCTGTTTGAGTGTAA+AGG | 0.455524 | 1_4:-69901345 | Msa0181680:intron |
| TTGAGCTTGATTTCTAGCTT+GGG | 0.460467 | 1_4:+69907173 | None:intergenic |
| GCATAAGATCTAACATGGTT+AGG | 0.460957 | 1_4:+69902888 | None:intergenic |
| AATTGGAATTGTTTCAGCTA+TGG | 0.460958 | 1_4:-69906739 | Msa0181680:CDS |
| TACATCTTACGCCTTATTCG+TGG | 0.460998 | 1_4:+69904139 | None:intergenic |
| ATCAAATATCATATCTGGCT+TGG | 0.461807 | 1_4:-69905911 | Msa0181680:CDS |
| ATGATGTTCATTGGAGCTCT+AGG | 0.465216 | 1_4:-69906983 | Msa0181680:CDS |
| TTTATGAACACCAAACTTGT+GGG | 0.465358 | 1_4:+69903662 | None:intergenic |
| GTCTCCGTTGAAGGACCCTA+TGG | 0.478399 | 1_4:-69903482 | Msa0181680:CDS |
| GGGCCTAATACAGCTGAGAT+AGG | 0.482185 | 1_4:+69902722 | None:intergenic |
| CCTGGTGATCTTGTTGGTGT+TGG | 0.482209 | 1_4:+69901624 | None:intergenic |
| TGCAATCTCTCCAGCTACAT+TGG | 0.482582 | 1_4:+69904198 | None:intergenic |
| TGACCAGGAATGGACGTCTC+AGG | 0.492465 | 1_4:+69906769 | None:intergenic |
| TTGTGCAGAATGTGGTCCAT+AGG | 0.494669 | 1_4:+69903466 | None:intergenic |
| GATGTTGGAGTTATGGTTTG+TGG | 0.495679 | 1_4:-69901318 | Msa0181680:CDS |
| GAGACCAACAAGACGTAGAA+TGG | 0.503751 | 1_4:+69905949 | None:intergenic |
| AACTAGAAGACACCGTAAAA+GGG | 0.507134 | 1_4:+69903609 | None:intergenic |
| TTGGGGCATCACCAATCAAA+TGG | 0.509212 | 1_4:-69905837 | Msa0181680:CDS |
| ACATATGTATCCAATGTAGC+TGG | 0.511036 | 1_4:-69904208 | Msa0181680:CDS |
| CCAAATAACTGGTTATGGCT+TGG | 0.512969 | 1_4:-69902701 | Msa0181680:CDS |
| CGCCTTCTTTGTGCATATGG+AGG | 0.515718 | 1_4:+69906640 | None:intergenic |
| TCACGGATTATAGATATGAA+TGG | 0.518337 | 1_4:+69902989 | None:intergenic |
| GAGTGTAAAGGCAAAGATGT+TGG | 0.518341 | 1_4:-69901333 | Msa0181680:CDS |
| ATTGTAGGCATGACCAGGAA+TGG | 0.518429 | 1_4:+69906759 | None:intergenic |
| TCATAGGGAATGTGAAAAGC+AGG | 0.518452 | 1_4:+69907002 | None:intergenic |
| ATTTATGAACACCAAACTTG+TGG | 0.522214 | 1_4:+69903661 | None:intergenic |
| GGCTTTGAAATATGAGATCA+CGG | 0.523890 | 1_4:+69902972 | None:intergenic |
| GAGCTCCAATGAACATCATA+GGG | 0.528983 | 1_4:+69906987 | None:intergenic |
| GGTGTTCATAAATGTTCCAA+AGG | 0.529380 | 1_4:-69903651 | Msa0181680:CDS |
| AGGTCACCAATTAAAACTGA+TGG | 0.530758 | 1_4:+69901224 | None:intergenic |
| TTACATAGGAAACATATGTT+GGG | 0.532430 | 1_4:-69906005 | Msa0181680:CDS |
| GTGATGGTGAGTGGTGGAAG+TGG | 0.534156 | 1_4:-69903019 | Msa0181680:CDS |
| GTTACATAGGAAACATATGT+TGG | 0.535893 | 1_4:-69906006 | Msa0181680:CDS |
| CCAACACCAACAAGATCACC+AGG | 0.536301 | 1_4:-69901624 | Msa0181680:CDS |
| TGTGCAGAATGTGGTCCATA+GGG | 0.536839 | 1_4:+69903467 | None:intergenic |
| CACCTCCATATGCACAAAGA+AGG | 0.544934 | 1_4:-69906642 | Msa0181680:CDS |
| TTATTCTATGCCATCCATGT+TGG | 0.547960 | 1_4:-69904073 | Msa0181680:CDS |
| AGATATAGAGAATGTAGAGA+TGG | 0.551790 | 1_4:+69904095 | None:intergenic |
| CCTTGGAGAAGTTGAGCTCA+AGG | 0.557986 | 1_4:+69903927 | None:intergenic |
| AAAAGGGTGCCATTGCAGCT+TGG | 0.560802 | 1_4:+69903625 | None:intergenic |
| CAAAGGTTTCCAAGCTGCAA+TGG | 0.560929 | 1_4:-69903634 | Msa0181680:CDS |
| CAACAAGATCACCAGGGTCA+TGG | 0.560968 | 1_4:-69901617 | Msa0181680:CDS |
| CTTAGAAATTGTGCAGAATG+TGG | 0.565118 | 1_4:+69903458 | None:intergenic |
| CATCACCAATCAAATGGTTG+AGG | 0.565173 | 1_4:-69905831 | Msa0181680:intron |
| TCTACATACTTCAGAGAGCA+AGG | 0.565212 | 1_4:-69907149 | Msa0181680:intron |
| TGATTTCCCAGGCGTTAGAG+TGG | 0.569832 | 1_4:-69904237 | Msa0181680:intron |
| TTCCAATTGTAGGCATGACC+AGG | 0.569930 | 1_4:+69906754 | None:intergenic |
| TTGTTCTTTCCAGTAACAAG+AGG | 0.575453 | 1_4:-69905977 | Msa0181680:CDS |
| ATGTAAGCTTCGATTTGTAA+CGG | 0.578008 | 1_4:+69902827 | None:intergenic |
| AAACGAATCAACCTTGTGGA+AGG | 0.590519 | 1_4:+69906914 | None:intergenic |
| TTGGATCTTGTTGCCCACAA+AGG | 0.591496 | 1_4:-69907216 | Msa0181680:CDS |
| CACAAAAGTTACCTTCCACA+AGG | 0.596116 | 1_4:-69906925 | Msa0181680:intron |
| CTGATAGTAACCAAGCATGT+TGG | 0.598857 | 1_4:+69903972 | None:intergenic |
| AAATGATCCTTAGGAATGTG+TGG | 0.600017 | 1_4:+69907270 | None:intergenic |
| GTATTCAACTCCAACATGGA+TGG | 0.603192 | 1_4:+69904063 | None:intergenic |
| TGAAGAGCCACACATTCCTA+AGG | 0.606681 | 1_4:-69907277 | Msa0181680:CDS |
| TATCCAATTGAAAATAACAC+AGG | 0.610435 | 1_4:-69902611 | Msa0181680:intron |
| GCACTAAAGATTGATGAGGA+AGG | 0.616155 | 1_4:+69901565 | None:intergenic |
| TGGAATGCTTGTTATCCACA+TGG | 0.616270 | 1_4:+69904159 | None:intergenic |
| CCTTGAGCTCAACTTCTCCA+AGG | 0.626515 | 1_4:-69903927 | Msa0181680:CDS |
| GTTTAATAGCATTAGCCATG+TGG | 0.627630 | 1_4:-69904174 | Msa0181680:CDS |
| CAGATTGTGATGGTGAGTGG+TGG | 0.628879 | 1_4:-69903025 | Msa0181680:CDS |
| TTATGAACACCAAACTTGTG+GGG | 0.629351 | 1_4:+69903663 | None:intergenic |
| CTTGGAGAAGTTGAGCTCAA+GGG | 0.630131 | 1_4:+69903928 | None:intergenic |
| AGGAAGCATAAGATCTAACA+TGG | 0.631448 | 1_4:+69902883 | None:intergenic |
| GAGTAACAATTCCTAAAAGG+AGG | 0.636071 | 1_4:+69902645 | None:intergenic |
| TGGTCCATAGGGTCCTTCAA+CGG | 0.647706 | 1_4:+69903478 | None:intergenic |
| GAGCAGATTGTGATGGTGAG+TGG | 0.648818 | 1_4:-69903028 | Msa0181680:CDS |
| GCTTGCACTAAAGATTGATG+AGG | 0.661055 | 1_4:+69901561 | None:intergenic |
| TTGAGCTCAAGGGCATCACA+AGG | 0.661183 | 1_4:+69903938 | None:intergenic |
| GAACCATAAATCCATGACCC+TGG | 0.663108 | 1_4:+69901606 | None:intergenic |
| CTGAGATAGGAGAATCTGAG+AGG | 0.667792 | 1_4:+69902735 | None:intergenic |
| ACATGTATTCAACTCCAACA+TGG | 0.684245 | 1_4:+69904059 | None:intergenic |
| CAGGCATGAGCAGATTGTGA+TGG | 0.694392 | 1_4:-69903035 | Msa0181680:CDS |
| CAACACCAACAAGATCACCA+GGG | 0.799066 | 1_4:-69901623 | Msa0181680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTGTTAATGATTTTA+GGG | - | chr1_4:69901590-69901609 | Msa0181680:CDS | 10.0% |
| !! | AACAAATTATTCTATTAAAT+TGG | - | chr1_4:69902129-69902148 | Msa0181680:intron | 10.0% |
| !!! | TTAAACTTTATTTTTTCATT+CGG | + | chr1_4:69902270-69902289 | None:intergenic | 10.0% |
| !!! | ATATTATTATTTTTTCATTC+AGG | + | chr1_4:69902522-69902541 | None:intergenic | 10.0% |
| !! | AATAATATACCTTTATAATT+TGG | - | chr1_4:69902534-69902553 | Msa0181680:intron | 10.0% |
| !!! | TTTGACAATTTTATTATTTT+TGG | + | chr1_4:69903257-69903276 | None:intergenic | 10.0% |
| !!! | ACATTAATCTTTTTTTTTTA+GGG | + | chr1_4:69903299-69903318 | None:intergenic | 10.0% |
| !!! | TACATTAATCTTTTTTTTTT+AGG | + | chr1_4:69903300-69903319 | None:intergenic | 10.0% |
| !!! | AAATAACACAAATTTTTTTA+CGG | - | chr1_4:69903409-69903428 | Msa0181680:intron | 10.0% |
| !!! | TTTTCGTTTTTTTTTTTTTT+TGG | - | chr1_4:69904045-69904064 | Msa0181680:intron | 10.0% |
| !! | AAAAAATGAAAATATATGTA+AGG | + | chr1_4:69904093-69904112 | None:intergenic | 10.0% |
| !!! | TTGTTTTTATTTTTTTTTGA+AGG | - | chr1_4:69906569-69906588 | Msa0181680:intron | 10.0% |
| !!! | CATTAATTGTTAATGATTTT+AGG | - | chr1_4:69901589-69901608 | Msa0181680:CDS | 15.0% |
| !!! | TTAATTGTTAATGATTTTAG+GGG | - | chr1_4:69901591-69901610 | Msa0181680:CDS | 15.0% |
| !! | TCAAAGTAGTTAATTATTAA+AGG | + | chr1_4:69901762-69901781 | None:intergenic | 15.0% |
| !!! | TAATAGAATAATTTGTTGTT+AGG | + | chr1_4:69902126-69902145 | None:intergenic | 15.0% |
| !! | TATTCTATTAAATTGGAATT+TGG | - | chr1_4:69902136-69902155 | Msa0181680:intron | 15.0% |
| !! | GATTCTATTAAATTTGAATT+TGG | + | chr1_4:69902419-69902438 | None:intergenic | 15.0% |
| !! | ATGAAAAAATAAACTTTATC+CGG | + | chr1_4:69902467-69902486 | None:intergenic | 15.0% |
| !!! | GATAAAGTTTATTTTTTCAT+CGG | - | chr1_4:69902467-69902486 | Msa0181680:intron | 15.0% |
| !! | TAATCAATACCAAATTATAA+AGG | + | chr1_4:69902546-69902565 | None:intergenic | 15.0% |
| !!! | TATAATTTGGTATTGATTAT+TGG | - | chr1_4:69902547-69902566 | Msa0181680:intron | 15.0% |
| !! | ATAATAATCAATCTCTTAAT+CGG | - | chr1_4:69903181-69903200 | Msa0181680:intron | 15.0% |
| !!! | AATACAATTATTCACTTTTT+GGG | + | chr1_4:69903228-69903247 | None:intergenic | 15.0% |
| !!! | TAATACAATTATTCACTTTT+TGG | + | chr1_4:69903229-69903248 | None:intergenic | 15.0% |
| !!! | AATAACACAAATTTTTTTAC+GGG | - | chr1_4:69903410-69903429 | Msa0181680:intron | 15.0% |
| !! | ACATTGAAAAATTTATAGAA+AGG | - | chr1_4:69903885-69903904 | Msa0181680:intron | 15.0% |
| !!! | TAAAACGTTCTTTTTTTTAA+TGG | - | chr1_4:69904143-69904162 | Msa0181680:CDS | 15.0% |
| !! | TAAACAAAAAATGATAACTT+TGG | + | chr1_4:69904911-69904930 | None:intergenic | 15.0% |
| !! | GTTTATAATGTGATAAAATA+AGG | - | chr1_4:69905341-69905360 | Msa0181680:intron | 15.0% |
| !! | GATAAAATAAGGATAAATTA+CGG | - | chr1_4:69905352-69905371 | Msa0181680:intron | 15.0% |
| !!! | TTTTCAATCTTTATGTTTAA+AGG | - | chr1_4:69906277-69906296 | Msa0181680:intron | 15.0% |
| !!! | TTATATAATTTTGACTAAGT+AGG | + | chr1_4:69906828-69906847 | None:intergenic | 15.0% |
| !!! | ATTTTTCTTTTGATGTTTCT+TGG | - | chr1_4:69901372-69901391 | Msa0181680:intron | 20.0% |
| !! | AAAAGTTCATTAAGAATGTT+TGG | + | chr1_4:69902168-69902187 | None:intergenic | 20.0% |
| !! | AAAAAATAAAGTTTAACTCG+AGG | - | chr1_4:69902274-69902293 | Msa0181680:intron | 20.0% |
| !! | AAAAATAAAGTTTAACTCGA+GGG | - | chr1_4:69902275-69902294 | Msa0181680:intron | 20.0% |
| !!! | TTTTAACGAACTTTTACTTA+TGG | + | chr1_4:69902382-69902401 | None:intergenic | 20.0% |
| !! | AAAAGTTCGTTAAAAATGTT+TGG | - | chr1_4:69902387-69902406 | Msa0181680:intron | 20.0% |
| !!! | CATAGGTTTTTTCATATATT+GGG | - | chr1_4:69902768-69902787 | Msa0181680:CDS | 20.0% |
| !!! | ATAGGTTTTTTCATATATTG+GGG | - | chr1_4:69902769-69902788 | Msa0181680:CDS | 20.0% |
| !!! | TTTTGTTTATGCATAATTTG+AGG | - | chr1_4:69902940-69902959 | Msa0181680:CDS | 20.0% |
| !! | ATGTGAAAATTTGAAAATGA+TGG | + | chr1_4:69903132-69903151 | None:intergenic | 20.0% |
| !! | AATGTAAAAATCTCTAAACA+AGG | - | chr1_4:69903314-69903333 | Msa0181680:intron | 20.0% |
| !! | CCATCTTAATCTTAATTATT+GGG | + | chr1_4:69903615-69903634 | None:intergenic | 20.0% |
| !! | TATTATATGAGTTGTACTTA+CGG | - | chr1_4:69903751-69903770 | Msa0181680:intron | 20.0% |
| !!! | TTTTCTCAAAAATTTGAAGT+TGG | - | chr1_4:69903811-69903830 | Msa0181680:intron | 20.0% |
| !! | TAGAAGCTCTTAAAATAAAA+AGG | - | chr1_4:69903850-69903869 | Msa0181680:intron | 20.0% |
| !! | AGCTTAGAAAAAATTGAAAA+GGG | - | chr1_4:69903908-69903927 | Msa0181680:intron | 20.0% |
| !!! | TCGTTTTTTTTTTTTTTTGG+TGG | - | chr1_4:69904048-69904067 | Msa0181680:intron | 20.0% |
| !!! | AAATTTTGTATTGTCTTACT+AGG | + | chr1_4:69904724-69904743 | None:intergenic | 20.0% |
| !! | TAGTGTTACAATTAAAAATG+TGG | - | chr1_4:69905059-69905078 | Msa0181680:intron | 20.0% |
| !! | AGTGTTACAATTAAAAATGT+GGG | - | chr1_4:69905060-69905079 | Msa0181680:intron | 20.0% |
| !!! | TTTTGAAAATACAAACAAGT+AGG | + | chr1_4:69905705-69905724 | None:intergenic | 20.0% |
| !!! | TTGTTTTAAACCATATAGTT+TGG | + | chr1_4:69905867-69905886 | None:intergenic | 20.0% |
| !! | TGAAATTAAAACCATGAATA+AGG | - | chr1_4:69906342-69906361 | Msa0181680:intron | 20.0% |
| !!! | TTTTATTGTTGTGTGTAAAT+TGG | - | chr1_4:69907163-69907182 | Msa0181680:CDS | 20.0% |
| !! | TTTATTGTTGTGTGTAAATT+GGG | - | chr1_4:69907164-69907183 | Msa0181680:CDS | 20.0% |
| ! | TCAAAAGAAAAATGATCCTT+AGG | + | chr1_4:69901365-69901384 | None:intergenic | 25.0% |
| !! | TAATTATTAAAGGCTAGCTA+GGG | + | chr1_4:69901752-69901771 | None:intergenic | 25.0% |
| !! | TTAATTATTAAAGGCTAGCT+AGG | + | chr1_4:69901753-69901772 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTGTTTCAGTAC+TGG | - | chr1_4:69901807-69901826 | Msa0181680:intron | 25.0% |
| !!! | TATGTTTTTGTTTCAGTACT+GGG | - | chr1_4:69901808-69901827 | Msa0181680:intron | 25.0% |
| !! | ACTAAAGTACTCTAATCATT+CGG | + | chr1_4:69902356-69902375 | None:intergenic | 25.0% |
| ! | GATCAATGATTATTCAATTC+AGG | + | chr1_4:69902227-69902246 | None:intergenic | 25.0% |
| !!! | ACTTTATTTTTTCATTCGGT+CGG | + | chr1_4:69902266-69902285 | None:intergenic | 25.0% |
| ! | TGAATTGAATAATCATTGAC+CGG | + | chr1_4:69902335-69902354 | None:intergenic | 25.0% |
| !! | ACTAAAGTACTCTAATCATT+CGG | - | chr1_4:69902356-69902375 | Msa0181680:intron | 25.0% |
| ! | CAAACTTTATTATAACTCTC+CGG | - | chr1_4:69902445-69902464 | Msa0181680:intron | 25.0% |
| !!! | AAAGTTTATTTTTTCATCGG+AGG | - | chr1_4:69902470-69902489 | Msa0181680:intron | 25.0% |
| !!! | AAGTTTATTTTTTCATCGGA+GGG | - | chr1_4:69902471-69902490 | Msa0181680:intron | 25.0% |
| ! | TTACATAGGAAACATATGTT+GGG | - | chr1_4:69902618-69902637 | Msa0181680:CDS | 25.0% |
| ! | CCAATATATGAAAAAACCTA+TGG | + | chr1_4:69902770-69902789 | None:intergenic | 25.0% |
| !!! | CCATAGGTTTTTTCATATAT+TGG | - | chr1_4:69902767-69902786 | Msa0181680:CDS | 25.0% |
| ! | ATGTGCATTTACAAAGAAAA+CGG | - | chr1_4:69903468-69903487 | Msa0181680:CDS | 25.0% |
| !!! | CACTAGTTCATAGTTTTTTT+TGG | - | chr1_4:69903506-69903525 | Msa0181680:CDS | 25.0% |
| ! | TCACTAGTTCATAGTTTAAA+GGG | - | chr1_4:69903533-69903552 | Msa0181680:CDS | 25.0% |
| !! | GAATTCTTCGAAGATTATTT+TGG | + | chr1_4:69903578-69903597 | None:intergenic | 25.0% |
| ! | CCCAATAATTAAGATTAAGA+TGG | - | chr1_4:69903612-69903631 | Msa0181680:CDS | 25.0% |
| ! | GCCATCTTAATCTTAATTAT+TGG | + | chr1_4:69903616-69903635 | None:intergenic | 25.0% |
| ! | AAAATTATGTGAGACTTTGT+TGG | + | chr1_4:69903732-69903751 | None:intergenic | 25.0% |
| ! | ATTATATGAGTTGTACTTAC+GGG | - | chr1_4:69903752-69903771 | Msa0181680:intron | 25.0% |
| ! | GAGCTTAGAAAAAATTGAAA+AGG | - | chr1_4:69903907-69903926 | Msa0181680:intron | 25.0% |
| !!! | TTTTTTTTTTTTTTGGTGGC+CGG | - | chr1_4:69904052-69904071 | Msa0181680:intron | 25.0% |
| ! | ATGAAAATATATGTAAGGTC+CGG | + | chr1_4:69904088-69904107 | None:intergenic | 25.0% |
| ! | TAGATATATACATGCATGAT+TGG | + | chr1_4:69904357-69904376 | None:intergenic | 25.0% |
| !!! | TACAAATATTTTGATTTCCC+AGG | - | chr1_4:69904375-69904394 | Msa0181680:intron | 25.0% |
| ! | TATAGTATAAACCTGAAGTT+AGG | + | chr1_4:69904939-69904958 | None:intergenic | 25.0% |
| !!! | CACAATTTCTAAGGTAAATT+TGG | - | chr1_4:69905175-69905194 | Msa0181680:intron | 25.0% |
| ! | CTCATATACTATGTATATGA+AGG | - | chr1_4:69905203-69905222 | Msa0181680:intron | 25.0% |
| ! | GTCACATTGTTCATAAATTT+AGG | - | chr1_4:69905455-69905474 | Msa0181680:intron | 25.0% |
| ! | AGAAACAAATCCAAACTATA+TGG | - | chr1_4:69905854-69905873 | Msa0181680:CDS | 25.0% |
| ! | TATCCAATTGAAAATAACAC+AGG | - | chr1_4:69906012-69906031 | Msa0181680:CDS | 25.0% |
| !!! | ATGGTTTTAATTTCATGAGT+TGG | + | chr1_4:69906337-69906356 | None:intergenic | 25.0% |
| ! | AACCTCACTCATTTAAAAAA+TGG | + | chr1_4:69906550-69906569 | None:intergenic | 25.0% |
| !! | AACCTTTTCAATTGGATTAT+AGG | - | chr1_4:69906791-69906810 | Msa0181680:CDS | 25.0% |
| ! | TTCTTTTGATGTTTCTTGGA+TGG | - | chr1_4:69901376-69901395 | Msa0181680:intron | 30.0% |
| !!! | TTATTTTTTCCCGATGAAGA+TGG | + | chr1_4:69901678-69901697 | None:intergenic | 30.0% |
| !! | ATGTTTTTGTTTCAGTACTG+GGG | - | chr1_4:69901809-69901828 | Msa0181680:intron | 30.0% |
| AATTGGAATTGTTTCAGCTA+TGG | - | chr1_4:69901884-69901903 | Msa0181680:intron | 30.0% | |
| !! | TGTTTGTTGCACTTTTGATA+TGG | - | chr1_4:69901925-69901944 | Msa0181680:intron | 30.0% |
| ! | TCGAGGGTTAATCTAAAATT+CGG | - | chr1_4:69902291-69902310 | Msa0181680:intron | 30.0% |
| GAATTGAATAATCATTGACC+GGG | + | chr1_4:69902334-69902353 | None:intergenic | 30.0% | |
| !! | TGATTATTGGTCTTTGTAGA+TGG | - | chr1_4:69902560-69902579 | Msa0181680:intron | 30.0% |
| !! | GATTATTGGTCTTTGTAGAT+GGG | - | chr1_4:69902561-69902580 | Msa0181680:intron | 30.0% |
| !!! | TTTTTGAGACTAGGTTACAT+AGG | - | chr1_4:69902604-69902623 | Msa0181680:intron | 30.0% |
| GTTACATAGGAAACATATGT+TGG | - | chr1_4:69902617-69902636 | Msa0181680:CDS | 30.0% | |
| CAAGCATCAAATATCATATC+TGG | - | chr1_4:69902707-69902726 | Msa0181680:CDS | 30.0% | |
| ATCAAATATCATATCTGGCT+TGG | - | chr1_4:69902712-69902731 | Msa0181680:CDS | 30.0% | |
| ! | TCTTTTTCCTCGATCTATTT+GGG | + | chr1_4:69902886-69902905 | None:intergenic | 30.0% |
| ! | TTCTTTTTCCTCGATCTATT+TGG | + | chr1_4:69902887-69902906 | None:intergenic | 30.0% |
| TCTCATTCATATAGCCATAT+AGG | - | chr1_4:69902915-69902934 | Msa0181680:CDS | 30.0% | |
| GCATAAACAAAAGACCTATA+TGG | + | chr1_4:69902932-69902951 | None:intergenic | 30.0% | |
| ! | CATAATTTGAGGTCCTATAA+TGG | - | chr1_4:69902951-69902970 | Msa0181680:CDS | 30.0% |
| ATATATACTGTCCCTTCATT+TGG | - | chr1_4:69903013-69903032 | Msa0181680:CDS | 30.0% | |
| ATCAATGTTGTCCAAATGAA+GGG | + | chr1_4:69903027-69903046 | None:intergenic | 30.0% | |
| GGAGAGAAGATAAAATTCTA+GGG | + | chr1_4:69903340-69903359 | None:intergenic | 30.0% | |
| TGGAGAGAAGATAAAATTCT+AGG | + | chr1_4:69903341-69903360 | None:intergenic | 30.0% | |
| TTTATCTTCTCTCCATCAAA+AGG | - | chr1_4:69903346-69903365 | Msa0181680:intron | 30.0% | |
| TGTGCATTTACAAAGAAAAC+GGG | - | chr1_4:69903469-69903488 | Msa0181680:CDS | 30.0% | |
| AAGAAAACGGGACTAATTAA+TGG | - | chr1_4:69903481-69903500 | Msa0181680:CDS | 30.0% | |
| CTCACTAGTTCATAGTTTAA+AGG | - | chr1_4:69903532-69903551 | Msa0181680:CDS | 30.0% | |
| AGTTCATAGTTTAAAGGGAT+TGG | - | chr1_4:69903538-69903557 | Msa0181680:CDS | 30.0% | |
| TTCGAAGAATTCATTCATGT+TGG | - | chr1_4:69903586-69903605 | Msa0181680:CDS | 30.0% | |
| TCGAAGAATTCATTCATGTT+GGG | - | chr1_4:69903587-69903606 | Msa0181680:CDS | 30.0% | |
| !! | TGTTAGTTTGTAATGCTCTT+TGG | + | chr1_4:69903655-69903674 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTTGGTGGCC+GGG | - | chr1_4:69904053-69904072 | Msa0181680:intron | 30.0% |
| TGAAAATATATGTAAGGTCC+GGG | + | chr1_4:69904087-69904106 | None:intergenic | 30.0% | |
| ATTTGATCGTGATATGTTGA+TGG | - | chr1_4:69904277-69904296 | Msa0181680:intron | 30.0% | |
| AGATATAGAGAATGTAGAGA+TGG | + | chr1_4:69904531-69904550 | None:intergenic | 30.0% | |
| TATGCTTCAATACAATGTGT+TGG | + | chr1_4:69904782-69904801 | None:intergenic | 30.0% | |
| ATTGTATTGAAGCATATGTC+TGG | - | chr1_4:69904786-69904805 | Msa0181680:intron | 30.0% | |
| !! | TGTTTACTTTTCCTAACTTC+AGG | - | chr1_4:69904925-69904944 | Msa0181680:intron | 30.0% |
| TTTATGAACACCAAACTTGT+GGG | + | chr1_4:69904964-69904983 | None:intergenic | 30.0% | |
| ATTTATGAACACCAAACTTG+TGG | + | chr1_4:69904965-69904984 | None:intergenic | 30.0% | |
| AGAACTTTCTTCTTCATCTT+TGG | - | chr1_4:69905107-69905126 | Msa0181680:intron | 30.0% | |
| GATTTCACAGATATGACTAT+GGG | + | chr1_4:69905273-69905292 | None:intergenic | 30.0% | |
| AGATTTCACAGATATGACTA+TGG | + | chr1_4:69905274-69905293 | None:intergenic | 30.0% | |
| ATAGTCATATCTGTGAAATC+TGG | - | chr1_4:69905273-69905292 | Msa0181680:intron | 30.0% | |
| ATAAGGATAAATTACGGTTG+CGG | - | chr1_4:69905358-69905377 | Msa0181680:intron | 30.0% | |
| ! | GGACTGCAATTTAAAACTAT+TGG | - | chr1_4:69905379-69905398 | Msa0181680:intron | 30.0% |
| ! | CAATTTAAAACTATTGGAGC+AGG | - | chr1_4:69905385-69905404 | Msa0181680:intron | 30.0% |
| AGTAGTGAAAAGTAAAACCT+AGG | - | chr1_4:69905411-69905430 | Msa0181680:intron | 30.0% | |
| CTCCATCTTTCTTTAGATTT+CGG | - | chr1_4:69905500-69905519 | Msa0181680:intron | 30.0% | |
| AACCGAAATCTAAAGAAAGA+TGG | + | chr1_4:69905505-69905524 | None:intergenic | 30.0% | |
| !! | CATCATTCTATCTCTAAAAC+AGG | - | chr1_4:69905569-69905588 | Msa0181680:intron | 30.0% |
| ! | TCACGGATTATAGATATGAA+TGG | + | chr1_4:69905637-69905656 | None:intergenic | 30.0% |
| ! | ATACAAACAAGTAGGAGTTT+TGG | + | chr1_4:69905697-69905716 | None:intergenic | 30.0% |
| ! | ATGTAAGCTTCGATTTGTAA+CGG | + | chr1_4:69905799-69905818 | None:intergenic | 30.0% |
| AACGAGTAACAATTCCTAAA+AGG | + | chr1_4:69905984-69906003 | None:intergenic | 30.0% | |
| !!! | TCACCTGTGTTATTTTCAAT+TGG | + | chr1_4:69906018-69906037 | None:intergenic | 30.0% |
| AAACATGTACCACATAACTT+TGG | + | chr1_4:69906058-69906077 | None:intergenic | 30.0% | |
| AGCCAGAAAATATGAATAGT+GGG | - | chr1_4:69906113-69906132 | Msa0181680:intron | 30.0% | |
| GATTGAAAATAGCTGAGAAA+AGG | + | chr1_4:69906266-69906285 | None:intergenic | 30.0% | |
| ACATTGACAATCCTTATTCA+TGG | + | chr1_4:69906356-69906375 | None:intergenic | 30.0% | |
| !!! | GACCATTTTTTAAATGAGTG+AGG | - | chr1_4:69906545-69906564 | Msa0181680:intron | 30.0% |
| !! | TTTTTGAAGGAAAATGAGTG+AGG | - | chr1_4:69906582-69906601 | Msa0181680:intron | 30.0% |
| ! | AAACCTCTAACCTTTTCAAT+TGG | - | chr1_4:69906783-69906802 | Msa0181680:CDS | 30.0% |
| AATCCAATTGAAAAGGTTAG+AGG | + | chr1_4:69906789-69906808 | None:intergenic | 30.0% | |
| CACCTATAATCCAATTGAAA+AGG | + | chr1_4:69906796-69906815 | None:intergenic | 30.0% | |
| TACCATGTCTATTGTATCAA+TGG | - | chr1_4:69907223-69907242 | Msa0181680:CDS | 30.0% | |
| ACCATGTCTATTGTATCAAT+GGG | - | chr1_4:69907224-69907243 | Msa0181680:CDS | 30.0% | |
| GAAATTCTGTTTGAGTGTAA+AGG | - | chr1_4:69907278-69907297 | Msa0181680:CDS | 30.0% | |
| !! | TTGAGTCCATCAGTTTTAAT+TGG | - | chr1_4:69907393-69907412 | Msa0181680:five_prime_UTR | 30.0% |
| AAATGATCCTTAGGAATGTG+TGG | + | chr1_4:69901356-69901375 | None:intergenic | 35.0% | |
| !! | GTGTTTTTGTAGACCTTTGT+GGG | + | chr1_4:69901423-69901442 | None:intergenic | 35.0% |
| !! | TGTGTTTTTGTAGACCTTTG+TGG | + | chr1_4:69901424-69901443 | None:intergenic | 35.0% |
| CAAAGGTCTACAAAAACACA+TGG | - | chr1_4:69901424-69901443 | Msa0181680:intron | 35.0% | |
| !! | TTGAGCTTGATTTCTAGCTT+GGG | + | chr1_4:69901453-69901472 | None:intergenic | 35.0% |
| !! | ATTGAGCTTGATTTCTAGCT+TGG | + | chr1_4:69901454-69901473 | None:intergenic | 35.0% |
| ACATTCCCTATGATGTTCAT+TGG | - | chr1_4:69901631-69901650 | Msa0181680:CDS | 35.0% | |
| GTGTTTATCTCCATCTTCAT+CGG | - | chr1_4:69901665-69901684 | Msa0181680:intron | 35.0% | |
| TGTTTATCTCCATCTTCATC+GGG | - | chr1_4:69901666-69901685 | Msa0181680:intron | 35.0% | |
| TTAGAAACGAATCAACCTTG+TGG | + | chr1_4:69901716-69901735 | None:intergenic | 35.0% | |
| GCTGAAACAATTCCAATTGT+AGG | + | chr1_4:69901882-69901901 | None:intergenic | 35.0% | |
| ! | GAACTCCAGACTCTAAAAAT+CGG | + | chr1_4:69902077-69902096 | None:intergenic | 35.0% |
| !!! | TATTTTTTCATTCGGTCGGA+AGG | + | chr1_4:69902262-69902281 | None:intergenic | 35.0% |
| ! | GGGTTAATCTAAAATTCGGT+CGG | - | chr1_4:69902295-69902314 | Msa0181680:intron | 35.0% |
| ! | TAATCTAAAATTCGGTCGGA+AGG | - | chr1_4:69902299-69902318 | Msa0181680:intron | 35.0% |
| !!! | AGGAGTGTATTTTTGAGACT+AGG | - | chr1_4:69902595-69902614 | Msa0181680:intron | 35.0% |
| TTGTTCTTTCCAGTAACAAG+AGG | - | chr1_4:69902646-69902665 | Msa0181680:CDS | 35.0% | |
| ACATACCTCAACCATTTGAT+TGG | + | chr1_4:69902800-69902819 | None:intergenic | 35.0% | |
| AAATTACCCCAAATAGATCG+AGG | - | chr1_4:69902876-69902895 | Msa0181680:intron | 35.0% | |
| ! | CTTTTTCCTCGATCTATTTG+GGG | + | chr1_4:69902885-69902904 | None:intergenic | 35.0% |
| CATCAATGTTGTCCAAATGA+AGG | + | chr1_4:69903028-69903047 | None:intergenic | 35.0% | |
| GGCCATAAAATCTCTTACTA+CGG | - | chr1_4:69903202-69903221 | Msa0181680:intron | 35.0% | |
| ! | TGTAAAACGAGTCCTTTTGA+TGG | + | chr1_4:69903361-69903380 | None:intergenic | 35.0% |
| CGAAGAATTCATTCATGTTG+GGG | - | chr1_4:69903588-69903607 | Msa0181680:CDS | 35.0% | |
| ACAAACTAACACACACTAAG+TGG | - | chr1_4:69903664-69903683 | Msa0181680:CDS | 35.0% | |
| !!! | TTTTTTTTTTTTGGTGGCCG+GGG | - | chr1_4:69904054-69904073 | Msa0181680:intron | 35.0% |
| GAAAATATATGTAAGGTCCG+GGG | + | chr1_4:69904086-69904105 | None:intergenic | 35.0% | |
| TCTAATGATCTAGCATTTCG+TGG | + | chr1_4:69904211-69904230 | None:intergenic | 35.0% | |
| ACATATGTATCCAATGTAGC+TGG | - | chr1_4:69904415-69904434 | Msa0181680:intron | 35.0% | |
| GTTTAATAGCATTAGCCATG+TGG | - | chr1_4:69904449-69904468 | Msa0181680:intron | 35.0% | |
| TAACAAGCATTCCACGAATA+AGG | - | chr1_4:69904473-69904492 | Msa0181680:intron | 35.0% | |
| TTATTCTATGCCATCCATGT+TGG | - | chr1_4:69904550-69904569 | Msa0181680:intron | 35.0% | |
| ACATGTATTCAACTCCAACA+TGG | + | chr1_4:69904567-69904586 | None:intergenic | 35.0% | |
| ! | ATCTAAGGTGTCTATCAATG+AGG | + | chr1_4:69904618-69904637 | None:intergenic | 35.0% |
| TATTGTCTTACTAGGATCCT+TGG | + | chr1_4:69904716-69904735 | None:intergenic | 35.0% | |
| ATACTATAACCCCACAAGTT+TGG | - | chr1_4:69904951-69904970 | Msa0181680:intron | 35.0% | |
| TTATGAACACCAAACTTGTG+GGG | + | chr1_4:69904963-69904982 | None:intergenic | 35.0% | |
| GGTGTTCATAAATGTTCCAA+AGG | - | chr1_4:69904972-69904991 | Msa0181680:intron | 35.0% | |
| AACTAGAAGACACCGTAAAA+GGG | + | chr1_4:69905017-69905036 | None:intergenic | 35.0% | |
| ! | GGTGTCTTCTAGTTGTAATT+TGG | - | chr1_4:69905023-69905042 | Msa0181680:intron | 35.0% |
| CAATTAAAAATGTGGGAAGC+TGG | - | chr1_4:69905067-69905086 | Msa0181680:intron | 35.0% | |
| CTTAGAAATTGTGCAGAATG+TGG | + | chr1_4:69905168-69905187 | None:intergenic | 35.0% | |
| CACATTCTGCACAATTTCTA+AGG | - | chr1_4:69905166-69905185 | Msa0181680:intron | 35.0% | |
| ATCATGTTCCTTTGAGTACA+TGG | - | chr1_4:69905247-69905266 | Msa0181680:intron | 35.0% | |
| ! | TTTAAAACTATTGGAGCAGG+CGG | - | chr1_4:69905388-69905407 | Msa0181680:intron | 35.0% |
| AACAATGTGACTACATTCCT+AGG | + | chr1_4:69905446-69905465 | None:intergenic | 35.0% | |
| !! | GGCTTTGAAATATGAGATCA+CGG | + | chr1_4:69905654-69905673 | None:intergenic | 35.0% |
| ! | GAGGTTGAAATTCTTGTTGT+TGG | + | chr1_4:69905675-69905694 | None:intergenic | 35.0% |
| GCATAAGATCTAACATGGTT+AGG | + | chr1_4:69905738-69905757 | None:intergenic | 35.0% | |
| ! | AGGAAGCATAAGATCTAACA+TGG | + | chr1_4:69905743-69905762 | None:intergenic | 35.0% |
| ! | TGTTTCTGAGTATCTCTTGA+AGG | + | chr1_4:69905841-69905860 | None:intergenic | 35.0% |
| CAAGCCATAACCAGTTATTT+GGG | + | chr1_4:69905924-69905943 | None:intergenic | 35.0% | |
| ! | ATCATGTTTCTCCTCCTTTT+AGG | - | chr1_4:69905967-69905986 | Msa0181680:CDS | 35.0% |
| GAGTAACAATTCCTAAAAGG+AGG | + | chr1_4:69905981-69906000 | None:intergenic | 35.0% | |
| GAGCCAGAAAATATGAATAG+TGG | - | chr1_4:69906112-69906131 | Msa0181680:intron | 35.0% | |
| GCCAGAAAATATGAATAGTG+GGG | - | chr1_4:69906114-69906133 | Msa0181680:intron | 35.0% | |
| CCAGAAAATATGAATAGTGG+GGG | - | chr1_4:69906115-69906134 | Msa0181680:intron | 35.0% | |
| TCATCAGATCTACTCATCAA+CGG | - | chr1_4:69906221-69906240 | Msa0181680:intron | 35.0% | |
| !! | TCATGAGTTGGTCTAAGAAA+AGG | + | chr1_4:69906401-69906420 | None:intergenic | 35.0% |
| CTTCTTCTTCTTCTTCTTCA+TGG | + | chr1_4:69906432-69906451 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+CGG | - | chr1_4:69906435-69906454 | Msa0181680:intron | 35.0% | |
| TATTCCTTTCACATGCAACA+CGG | + | chr1_4:69906760-69906779 | None:intergenic | 35.0% | |
| AATTGGATTATAGGTGAGTG+TGG | - | chr1_4:69906800-69906819 | Msa0181680:CDS | 35.0% | |
| AATTTCAGAGAACTTAGTGC+AGG | - | chr1_4:69906864-69906883 | Msa0181680:intron | 35.0% | |
| GTTCTAGCGTTGTATTTCTT+TGG | - | chr1_4:69906925-69906944 | Msa0181680:intron | 35.0% | |
| ! | CAAGCTACCAATGTACATTT+TGG | - | chr1_4:69907080-69907099 | Msa0181680:intron | 35.0% |
| TCCCATTGATACAATAGACA+TGG | + | chr1_4:69907228-69907247 | None:intergenic | 35.0% | |
| ! | ACTTCGTGTCTCAATTTTCT+TGG | + | chr1_4:69907332-69907351 | None:intergenic | 35.0% |
| ! | TAGAATTTGTGCTTCTGGTT+TGG | - | chr1_4:69907355-69907374 | Msa0181680:five_prime_UTR | 35.0% |
| TTCTTGGATGGCTAACAGTT+TGG | - | chr1_4:69901388-69901407 | Msa0181680:intron | 40.0% | |
| TCTACATACTTCAGAGAGCA+AGG | - | chr1_4:69901474-69901493 | Msa0181680:intron | 40.0% | |
| ATACTTCAGAGAGCAAGGTT+AGG | - | chr1_4:69901479-69901498 | Msa0181680:intron | 40.0% | |
| TCATAGGGAATGTGAAAAGC+AGG | + | chr1_4:69901624-69901643 | None:intergenic | 40.0% | |
| GAGCTCCAATGAACATCATA+GGG | + | chr1_4:69901639-69901658 | None:intergenic | 40.0% | |
| AGAGCTCCAATGAACATCAT+AGG | + | chr1_4:69901640-69901659 | None:intergenic | 40.0% | |
| ATGATGTTCATTGGAGCTCT+AGG | - | chr1_4:69901640-69901659 | Msa0181680:intron | 40.0% | |
| CACAAAAGTTACCTTCCACA+AGG | - | chr1_4:69901698-69901717 | Msa0181680:intron | 40.0% | |
| AAACGAATCAACCTTGTGGA+AGG | + | chr1_4:69901712-69901731 | None:intergenic | 40.0% | |
| ! | CTCTAAAAATCGGAGGGTTA+AGG | + | chr1_4:69902067-69902086 | None:intergenic | 40.0% |
| ! | TCCAGACTCTAAAAATCGGA+GGG | + | chr1_4:69902073-69902092 | None:intergenic | 40.0% |
| ATGGAAGAACCTCTTGTTAC+TGG | + | chr1_4:69902658-69902677 | None:intergenic | 40.0% | |
| TCTTCCATTCTACGTCTTGT+TGG | - | chr1_4:69902670-69902689 | Msa0181680:CDS | 40.0% | |
| !! | CTGGCTTGGACAATTATCTA+TGG | - | chr1_4:69902726-69902745 | Msa0181680:CDS | 40.0% |
| CATCACCAATCAAATGGTTG+AGG | - | chr1_4:69902792-69902811 | Msa0181680:CDS | 40.0% | |
| ! | TTTGAGGTCCTATAATGGCA+AGG | - | chr1_4:69902956-69902975 | Msa0181680:CDS | 40.0% |
| CAGTAGATCCTTGCCATTAT+AGG | + | chr1_4:69902967-69902986 | None:intergenic | 40.0% | |
| ATCTACTGCCTCTTTCTGAT+TGG | - | chr1_4:69902979-69902998 | Msa0181680:CDS | 40.0% | |
| GCTCAATTCCAATCAGAAAG+AGG | + | chr1_4:69902990-69903009 | None:intergenic | 40.0% | |
| ! | GGCCGTAGTAAGAGATTTTA+TGG | + | chr1_4:69903207-69903226 | None:intergenic | 40.0% |
| ! | TGAGACTTTGTTGGTTGCTA+AGG | + | chr1_4:69903723-69903742 | None:intergenic | 40.0% |
| ACTTACGGGTCATTAGTGTT+TGG | - | chr1_4:69903766-69903785 | Msa0181680:intron | 40.0% | |
| !! | ATTGCCAAGTATCGAAGTGT+AGG | + | chr1_4:69903996-69904015 | None:intergenic | 40.0% |
| !! | TGGAATGCTTGTTATCCACA+TGG | + | chr1_4:69904467-69904486 | None:intergenic | 40.0% |
| ! | TACATCTTACGCCTTATTCG+TGG | + | chr1_4:69904487-69904506 | None:intergenic | 40.0% |
| GTATTCAACTCCAACATGGA+TGG | + | chr1_4:69904563-69904582 | None:intergenic | 40.0% | |
| ATGAGGAATAGGAAAATCCC+AGG | + | chr1_4:69904601-69904620 | None:intergenic | 40.0% | |
| GGTGTCTATCAATGAGGAAT+AGG | + | chr1_4:69904612-69904631 | None:intergenic | 40.0% | |
| GGCGAGATTGTAAGAATCTA+AGG | + | chr1_4:69904633-69904652 | None:intergenic | 40.0% | |
| CTGATAGTAACCAAGCATGT+TGG | + | chr1_4:69904654-69904673 | None:intergenic | 40.0% | |
| TGAAGCATATGTCTGGTATC+CGG | - | chr1_4:69904793-69904812 | Msa0181680:intron | 40.0% | |
| CAACTAGAAGACACCGTAAA+AGG | + | chr1_4:69905018-69905037 | None:intergenic | 40.0% | |
| CATCTTAATGTCTCCGTTGA+AGG | - | chr1_4:69905132-69905151 | Msa0181680:intron | 40.0% | |
| GACGTTCATAGTTAAACTGC+TGG | - | chr1_4:69905299-69905318 | Msa0181680:intron | 40.0% | |
| !! | CAAACAAGTAGGAGTTTTGG+AGG | + | chr1_4:69905694-69905713 | None:intergenic | 40.0% |
| GATCTTATGCTTCCTGTTTC+TGG | - | chr1_4:69905748-69905767 | Msa0181680:intron | 40.0% | |
| TGAGTTGTTGAACCAGAAAC+AGG | + | chr1_4:69905763-69905782 | None:intergenic | 40.0% | |
| TCTCCTATCTCAGCTGTATT+AGG | - | chr1_4:69905898-69905917 | Msa0181680:CDS | 40.0% | |
| CTGTATTAGGCCCAAATAAC+TGG | - | chr1_4:69905911-69905930 | Msa0181680:CDS | 40.0% | |
| TAGGCCCAAATAACTGGTTA+TGG | - | chr1_4:69905917-69905936 | Msa0181680:CDS | 40.0% | |
| CCAAGCCATAACCAGTTATT+TGG | + | chr1_4:69905925-69905944 | None:intergenic | 40.0% | |
| CCAAATAACTGGTTATGGCT+TGG | - | chr1_4:69905922-69905941 | Msa0181680:CDS | 40.0% | |
| ACACAGGTGAAGTGTATAAC+TGG | - | chr1_4:69906028-69906047 | Msa0181680:CDS | 40.0% | |
| ACTGGACTTCCAAAGTTATG+TGG | - | chr1_4:69906046-69906065 | Msa0181680:CDS | 40.0% | |
| TGTGTATGTATATGCAGTGG+CGG | - | chr1_4:69906090-69906109 | Msa0181680:intron | 40.0% | |
| ! | CCCCCACTATTCATATTTTC+TGG | + | chr1_4:69906118-69906137 | None:intergenic | 40.0% |
| CATCAGATCTACTCATCAAC+GGG | - | chr1_4:69906222-69906241 | Msa0181680:intron | 40.0% | |
| TGTTCCTTTACTCAGCGTTA+TGG | - | chr1_4:69906373-69906392 | Msa0181680:intron | 40.0% | |
| GAAGATCAGAGTGGAAAAAG+AGG | - | chr1_4:69906498-69906517 | Msa0181680:intron | 40.0% | |
| TCAGAGTGGAAAAAGAGGAA+AGG | - | chr1_4:69906503-69906522 | Msa0181680:intron | 40.0% | |
| AAATACAACGCTAGAACCAG+GGG | + | chr1_4:69906922-69906941 | None:intergenic | 40.0% | |
| GAAATACAACGCTAGAACCA+GGG | + | chr1_4:69906923-69906942 | None:intergenic | 40.0% | |
| AGAAATACAACGCTAGAACC+AGG | + | chr1_4:69906924-69906943 | None:intergenic | 40.0% | |
| GCACTAAAGATTGATGAGGA+AGG | + | chr1_4:69907061-69907080 | None:intergenic | 40.0% | |
| GCTTGCACTAAAGATTGATG+AGG | + | chr1_4:69907065-69907084 | None:intergenic | 40.0% | |
| CCTTGCACCAAAATGTACAT+TGG | + | chr1_4:69907090-69907109 | None:intergenic | 40.0% | |
| !! | CCAATGTACATTTTGGTGCA+AGG | - | chr1_4:69907087-69907106 | Msa0181680:intron | 40.0% |
| GAGTGTAAAGGCAAAGATGT+TGG | - | chr1_4:69907290-69907309 | Msa0181680:exon | 40.0% | |
| AGGCAAAGATGTTGGAGTTA+TGG | - | chr1_4:69907298-69907317 | Msa0181680:intron | 40.0% | |
| GATGTTGGAGTTATGGTTTG+TGG | - | chr1_4:69907305-69907324 | Msa0181680:intron | 40.0% | |
| GTTGCTAGAATTTGTGCTTC+TGG | - | chr1_4:69907350-69907369 | Msa0181680:five_prime_UTR | 40.0% | |
| TGAAGAGCCACACATTCCTA+AGG | - | chr1_4:69901346-69901365 | Msa0181680:intron | 45.0% | |
| TTGGATCTTGTTGCCCACAA+AGG | - | chr1_4:69901407-69901426 | Msa0181680:intron | 45.0% | |
| ATTGTAGGCATGACCAGGAA+TGG | + | chr1_4:69901867-69901886 | None:intergenic | 45.0% | |
| TTCCTGGTCATGCCTACAAT+TGG | - | chr1_4:69901867-69901886 | Msa0181680:intron | 45.0% | |
| TTCCAATTGTAGGCATGACC+AGG | + | chr1_4:69901872-69901891 | None:intergenic | 45.0% | |
| CATATGGAGGTGAGCAAAAC+TGG | + | chr1_4:69901973-69901992 | None:intergenic | 45.0% | |
| CACCTCCATATGCACAAAGA+AGG | - | chr1_4:69901981-69902000 | Msa0181680:intron | 45.0% | |
| TCTCGCCTTCTTTGTGCATA+TGG | + | chr1_4:69901989-69902008 | None:intergenic | 45.0% | |
| !!! | ACCCTCCGATTTTTAGAGTC+TGG | - | chr1_4:69902069-69902088 | Msa0181680:intron | 45.0% |
| ! | CTCCAGACTCTAAAAATCGG+AGG | + | chr1_4:69902074-69902093 | None:intergenic | 45.0% |
| GTCGGAAGGAAAATAAAGCC+CGG | - | chr1_4:69902313-69902332 | Msa0181680:intron | 45.0% | |
| GAGACCAACAAGACGTAGAA+TGG | + | chr1_4:69902677-69902696 | None:intergenic | 45.0% | |
| ! | CTTTTTGCTGCACACACCAT+AGG | - | chr1_4:69902751-69902770 | Msa0181680:CDS | 45.0% |
| ! | TTGGGGCATCACCAATCAAA+TGG | - | chr1_4:69902786-69902805 | Msa0181680:CDS | 45.0% |
| !! | TTTAAAGGGATTGGCTCGAG+TGG | - | chr1_4:69903547-69903566 | Msa0181680:CDS | 45.0% |
| ACACACTAAGTGGAGAGAAG+AGG | - | chr1_4:69903674-69903693 | Msa0181680:CDS | 45.0% | |
| ! | TGGAGAGAAGAGGTATACTG+TGG | - | chr1_4:69903684-69903703 | Msa0181680:intron | 45.0% |
| ACAGCCTACACTTCGATACT+TGG | - | chr1_4:69903989-69904008 | Msa0181680:CDS | 45.0% | |
| GATCTAGCATTTCGTGGCTA+TGG | + | chr1_4:69904205-69904224 | None:intergenic | 45.0% | |
| TGCAATCTCTCCAGCTACAT+TGG | + | chr1_4:69904428-69904447 | None:intergenic | 45.0% | |
| TACATGTGCATGATTGCTCC+TGG | - | chr1_4:69904580-69904599 | Msa0181680:intron | 45.0% | |
| ACATGTGCATGATTGCTCCT+GGG | - | chr1_4:69904581-69904600 | Msa0181680:intron | 45.0% | |
| TACAATCTCGCCAACATGCT+TGG | - | chr1_4:69904641-69904660 | Msa0181680:intron | 45.0% | |
| !! | CAAGGGCATCACAAGGTAAA+AGG | + | chr1_4:69904681-69904700 | None:intergenic | 45.0% |
| CTTGGAGAAGTTGAGCTCAA+GGG | + | chr1_4:69904698-69904717 | None:intergenic | 45.0% | |
| GTTAGAGTCGTGTCAATGTC+CGG | + | chr1_4:69904815-69904834 | None:intergenic | 45.0% | |
| CATTGCAGCTTGGAAACCTT+TGG | + | chr1_4:69904991-69905010 | None:intergenic | 45.0% | |
| CAAAGGTTTCCAAGCTGCAA+TGG | - | chr1_4:69904989-69905008 | Msa0181680:intron | 45.0% | |
| TGTGCAGAATGTGGTCCATA+GGG | + | chr1_4:69905159-69905178 | None:intergenic | 45.0% | |
| TTGTGCAGAATGTGGTCCAT+AGG | + | chr1_4:69905160-69905179 | None:intergenic | 45.0% | |
| ACTATGGGCCATGTACTCAA+AGG | + | chr1_4:69905258-69905277 | None:intergenic | 45.0% | |
| ! | ACTGCTGGTTGTCTTTATGC+TGG | - | chr1_4:69905314-69905333 | Msa0181680:intron | 45.0% |
| CTGAGATAGGAGAATCTGAG+AGG | + | chr1_4:69905891-69905910 | None:intergenic | 45.0% | |
| GCGTGTGTATGTATATGCAG+TGG | - | chr1_4:69906087-69906106 | Msa0181680:intron | 45.0% | |
| ! | AATAGTGGGGGCACAAATAG+TGG | - | chr1_4:69906127-69906146 | Msa0181680:intron | 45.0% |
| TCGTCGTTGTTCCTATTCGT+CGG | + | chr1_4:69906194-69906213 | None:intergenic | 45.0% | |
| GGAACCATAACGCTGAGTAA+AGG | + | chr1_4:69906380-69906399 | None:intergenic | 45.0% | |
| GAGTGGAAAAAGAGGAAAGG+TGG | - | chr1_4:69906506-69906525 | Msa0181680:intron | 45.0% | |
| TGGAAAAAGAGGAAAGGTGG+AGG | - | chr1_4:69906509-69906528 | Msa0181680:intron | 45.0% | |
| TGTACCGTGTTGCATGTGAA+AGG | - | chr1_4:69906753-69906772 | Msa0181680:CDS | 45.0% | |
| CAACACCAACAAGATCACCA+GGG | - | chr1_4:69907000-69907019 | Msa0181680:CDS | 45.0% | |
| TCACCAGGGTCATGGATTTA+TGG | - | chr1_4:69907014-69907033 | Msa0181680:CDS | 45.0% | |
| GAACCATAAATCCATGACCC+TGG | + | chr1_4:69907020-69907039 | None:intergenic | 45.0% | |
| CCTCACTTACTCTTGAGATC+AGG | + | chr1_4:69907113-69907132 | None:intergenic | 45.0% | |
| CCTGATCTCAAGAGTAAGTG+AGG | - | chr1_4:69907110-69907129 | Msa0181680:intron | 45.0% | |
| ATCTCAAGAGTAAGTGAGGC+AGG | - | chr1_4:69907114-69907133 | Msa0181680:intron | 45.0% | |
| TCTCAAGAGTAAGTGAGGCA+GGG | - | chr1_4:69907115-69907134 | Msa0181680:intron | 45.0% | |
| !!! | TATATTTTCATTTTTTTTAA+TGG | - | chr1_4:69904097-69904116 | Msa0181680:CDS | 5.0% |
| TTTCCTGAGACGTCCATTCC+TGG | - | chr1_4:69901851-69901870 | Msa0181680:intron | 50.0% | |
| CGCCTTCTTTGTGCATATGG+AGG | + | chr1_4:69901986-69902005 | None:intergenic | 50.0% | |
| GTAGATGGGAAGCGAAGTTC+AGG | - | chr1_4:69902575-69902594 | Msa0181680:intron | 50.0% | |
| TGATTTCCCAGGCGTTAGAG+TGG | - | chr1_4:69904386-69904405 | Msa0181680:intron | 50.0% | |
| !! | TTGAGCTCAAGGGCATCACA+AGG | + | chr1_4:69904688-69904707 | None:intergenic | 50.0% |
| CCTTGGAGAAGTTGAGCTCA+AGG | + | chr1_4:69904699-69904718 | None:intergenic | 50.0% | |
| CCTTGAGCTCAACTTCTCCA+AGG | - | chr1_4:69904696-69904715 | Msa0181680:intron | 50.0% | |
| !! | AAAAGGGTGCCATTGCAGCT+TGG | + | chr1_4:69905001-69905020 | None:intergenic | 50.0% |
| ! | GCTGCAATGGCACCCTTTTA+CGG | - | chr1_4:69905002-69905021 | Msa0181680:intron | 50.0% |
| TGGTCCATAGGGTCCTTCAA+CGG | + | chr1_4:69905148-69905167 | None:intergenic | 50.0% | |
| CAGGCATGAGCAGATTGTGA+TGG | - | chr1_4:69905588-69905607 | Msa0181680:intron | 50.0% | |
| ! | GAGCAGATTGTGATGGTGAG+TGG | - | chr1_4:69905595-69905614 | Msa0181680:intron | 50.0% |
| ! | CAGATTGTGATGGTGAGTGG+TGG | - | chr1_4:69905598-69905617 | Msa0181680:intron | 50.0% |
| GGGCCTAATACAGCTGAGAT+AGG | + | chr1_4:69905904-69905923 | None:intergenic | 50.0% | |
| CAACGGGATTCACAACGCTA+TGG | - | chr1_4:69906238-69906257 | Msa0181680:intron | 50.0% | |
| ! | GGAGGCACGTATAGCATTGT+GGG | + | chr1_4:69906898-69906917 | None:intergenic | 50.0% |
| CCTGGTGATCTTGTTGGTGT+TGG | + | chr1_4:69907002-69907021 | None:intergenic | 50.0% | |
| CCAACACCAACAAGATCACC+AGG | - | chr1_4:69906999-69907018 | Msa0181680:CDS | 50.0% | |
| CATGACCCTGGTGATCTTGT+TGG | + | chr1_4:69907008-69907027 | None:intergenic | 50.0% | |
| CAACAAGATCACCAGGGTCA+TGG | - | chr1_4:69907006-69907025 | Msa0181680:CDS | 50.0% | |
| TGACCAGGAATGGACGTCTC+AGG | + | chr1_4:69901857-69901876 | None:intergenic | 55.0% | |
| CTTGCTCCACTCTAACGCCT+GGG | + | chr1_4:69904395-69904414 | None:intergenic | 55.0% | |
| TCTTGCTCCACTCTAACGCC+TGG | + | chr1_4:69904396-69904415 | None:intergenic | 55.0% | |
| GTCTCCGTTGAAGGACCCTA+TGG | - | chr1_4:69905141-69905160 | Msa0181680:intron | 55.0% | |
| ! | GTGATGGTGAGTGGTGGAAG+TGG | - | chr1_4:69905604-69905623 | Msa0181680:intron | 55.0% |
| TCGGCGAAGTTCCTGTTCAC+CGG | + | chr1_4:69906175-69906194 | None:intergenic | 55.0% | |
| CAGGAACTTCGCCGACGAAT+AGG | - | chr1_4:69906180-69906199 | Msa0181680:intron | 55.0% | |
| GAAGAAGCGGCACAGAACGT+CGG | - | chr1_4:69906472-69906491 | Msa0181680:intron | 55.0% | |
| CGTCGGAGAGAAGATCAGAG+TGG | - | chr1_4:69906489-69906508 | Msa0181680:intron | 55.0% | |
| ! | CGGAGGCACGTATAGCATTG+TGG | + | chr1_4:69906899-69906918 | None:intergenic | 55.0% |
| TACAACGCTAGAACCAGGGG+CGG | + | chr1_4:69906919-69906938 | None:intergenic | 55.0% | |
| GTCTCAGCAGCTGCGTACAA+AGG | + | chr1_4:69907193-69907212 | None:intergenic | 55.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr1_4:69904074-69904093 | None:intergenic | 60.0% | |
| AACCTAGGCGCTCTGCTCCT+AGG | - | chr1_4:69905426-69905445 | Msa0181680:intron | 60.0% | |
| ! | TTCCTAGGAGCAGAGCGCCT+AGG | + | chr1_4:69905431-69905450 | None:intergenic | 60.0% |
| AGAACAGCAGCGACGACCTC+CGG | - | chr1_4:69906153-69906172 | Msa0181680:intron | 60.0% | |
| GCGAAGTTCCTGTTCACCGG+AGG | + | chr1_4:69906172-69906191 | None:intergenic | 60.0% | |
| AGCGACGACCTCCGGTGAAC+AGG | - | chr1_4:69906161-69906180 | Msa0181680:intron | 65.0% | |
| AACGCTAGAACCAGGGGCGG+AGG | + | chr1_4:69906916-69906935 | None:intergenic | 65.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr1_4:69904066-69904085 | Msa0181680:CDS | 70.0% | |
| GCTATACGTGCCTCCGCCCC+TGG | - | chr1_4:69906903-69906922 | Msa0181680:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69901227 | 69907418 | 69901227 | ID=Msa0181680;Name=Msa0181680 |
| chr1_4 | mRNA | 69901227 | 69907418 | 69901227 | ID=Msa0181680-mRNA-1;Parent=Msa0181680;Name=Msa0181680-mRNA-1;_AED=0.27;_eAED=0.27;_QI=91|0.63|0.5|1|0.45|0.25|12|0|617 |
| chr1_4 | exon | 69901227 | 69901352 | 69901227 | ID=Msa0181680-mRNA-1:exon:23338;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69901554 | 69901651 | 69901554 | ID=Msa0181680-mRNA-1:exon:23337;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69902612 | 69902852 | 69902612 | ID=Msa0181680-mRNA-1:exon:23336;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69902883 | 69903054 | 69902883 | ID=Msa0181680-mRNA-1:exon:23335;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69903458 | 69903698 | 69903458 | ID=Msa0181680-mRNA-1:exon:23334;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69903921 | 69904018 | 69903921 | ID=Msa0181680-mRNA-1:exon:23333;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69904061 | 69904248 | 69904061 | ID=Msa0181680-mRNA-1:exon:23332;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69905832 | 69906066 | 69905832 | ID=Msa0181680-mRNA-1:exon:23331;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69906633 | 69906821 | 69906633 | ID=Msa0181680-mRNA-1:exon:23330;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69906926 | 69907034 | 69906926 | ID=Msa0181680-mRNA-1:exon:23329;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69907150 | 69907316 | 69907150 | ID=Msa0181680-mRNA-1:exon:23328;Parent=Msa0181680-mRNA-1 |
| chr1_4 | exon | 69907338 | 69907418 | 69907338 | ID=Msa0181680-mRNA-1:exon:23327;Parent=Msa0181680-mRNA-1 |
| chr1_4 | five_prime_UTR | 69907338 | 69907418 | 69907338 | ID=Msa0181680-mRNA-1:five_prime_utr;Parent=Msa0181680-mRNA-1 |
| chr1_4 | five_prime_UTR | 69907307 | 69907316 | 69907307 | ID=Msa0181680-mRNA-1:five_prime_utr;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69907150 | 69907306 | 69907150 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69906926 | 69907034 | 69906926 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69906633 | 69906821 | 69906633 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69905832 | 69906066 | 69905832 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69904061 | 69904248 | 69904061 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69903921 | 69904018 | 69903921 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69903458 | 69903698 | 69903458 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69902883 | 69903054 | 69902883 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69902612 | 69902852 | 69902612 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69901554 | 69901651 | 69901554 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| chr1_4 | CDS | 69901227 | 69901352 | 69901227 | ID=Msa0181680-mRNA-1:cds;Parent=Msa0181680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
