AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182110 MtrunA17_Chr1g0201711 99.323 443 3 0 1 443 1 443 0.0 913
Msa0182110 MtrunA17_Chr6g0464571 78.104 443 91 1 1 443 1 437 0.0 730
Msa0182110 MtrunA17_Chr6g0464521 84.416 231 36 0 1 231 1 231 2.07e-144 412
Msa0182110 MtrunA17_Chr6g0464531 84.038 213 34 0 231 443 1 213 4.15e-127 366
Msa0182110 MtrunA17_Chr6g0464551 64.015 264 77 5 128 391 16 261 9.42e-111 328
Msa0182110 MtrunA17_Chr7g0217671 32.277 347 182 11 4 333 17 327 3.24e-44 161
Msa0182110 MtrunA17_Chr7g0217671 32.258 217 107 6 21 197 129 345 6.20e-20 92.0
Msa0182110 MtrunA17_Chr3g0126461 31.322 348 186 12 4 334 16 327 4.76e-40 150
Msa0182110 MtrunA17_Chr3g0126461 32.143 224 98 6 21 197 128 344 8.66e-24 103
Msa0182110 MtrunA17_Chr1g0158921 29.650 371 185 12 4 334 16 350 8.21e-33 129
Msa0182110 MtrunA17_Chr1g0158921 32.547 212 104 5 25 197 156 367 2.78e-23 101
Msa0182110 MtrunA17_Chr6g0453381 40.179 112 61 4 54 162 10 118 2.75e-19 83.6
Msa0182110 MtrunA17_Chr6g0453371 33.793 145 80 5 92 223 23 164 2.20e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182110 AT1G43190.2 82.658 444 64 2 1 443 1 432 0.0 751
Msa0182110 AT1G43190.1 82.658 444 64 2 1 443 1 432 0.0 751
Msa0182110 AT1G43190.3 82.207 444 64 3 1 443 1 430 0.0 742
Msa0182110 AT3G01150.1 31.319 364 196 12 4 348 15 343 1.28e-44 160
Msa0182110 AT3G01150.1 30.741 270 131 9 15 243 122 376 7.81e-22 97.4
Msa0182110 AT3G01150.3 32.424 330 175 10 4 320 15 309 7.47e-44 156
Msa0182110 AT3G01150.3 30.159 189 94 4 15 165 122 310 1.58e-14 74.7
Msa0182110 AT5G53180.1 31.034 348 187 12 4 334 16 327 5.03e-40 149
Msa0182110 AT5G53180.1 33.962 212 100 7 21 192 128 339 1.10e-24 105
Msa0182110 AT5G53180.6 33.493 209 100 6 23 192 1 209 3.94e-26 107
Msa0182110 AT5G53180.2 33.173 208 100 6 24 192 32 239 5.40e-25 105
Msa0182110 AT5G53180.4 33.173 208 100 6 24 192 33 240 5.88e-25 105
Msa0182110 AT5G53180.3 33.173 208 100 6 24 192 18 225 5.92e-25 105
Msa0182110 AT5G53180.5 46.154 104 54 2 91 192 126 229 4.10e-22 97.1
Msa0182110 AT3G01150.2 29.032 248 130 7 115 348 3 218 8.98e-22 95.1
Msa0182110 AT3G01150.2 31.034 261 124 9 24 243 6 251 2.22e-21 94.0
Msa0182110 AT3G01150.4 30.374 214 109 5 115 320 3 184 6.31e-21 90.5
Msa0182110 AT3G01150.4 30.556 180 87 4 24 165 6 185 2.25e-14 72.0

Find 135 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTGTTCTCCCTTTA+TGG 0.035664 1_4:+70532565 Msa0182110:CDS
GCGGCCATTGCAGCTGCTTT+TGG 0.074456 1_4:+70532372 Msa0182110:CDS
TTTAAATCATTGTTGTATTT+TGG 0.136382 1_4:+70534115 Msa0182110:three_prime_UTR
TACGAACTTTGTAGGCTTTC+AGG 0.175411 1_4:+70531031 Msa0182110:intron
TTCTGTTCTGTAGGGAGATT+TGG 0.179215 1_4:-70531558 None:intergenic
AGAGACAAGGATTCTGAATT+TGG 0.219094 1_4:+70533828 Msa0182110:three_prime_UTR
ATACAACATAATGGCATATT+TGG 0.228189 1_4:-70534138 None:intergenic
CTTCAGTTATTTCAACCTTT+TGG 0.234793 1_4:+70529348 Msa0182110:CDS
CGCTTTCTGGCTCGGTAATT+CGG 0.274128 1_4:+70533719 Msa0182110:CDS
AGCTGCAATGGCCGCAGCAT+TGG 0.284533 1_4:-70532364 None:intergenic
TTCTCACAATGTTTCCATAA+AGG 0.300059 1_4:-70532579 None:intergenic
TCTCACAATGTTTCCATAAA+GGG 0.309290 1_4:-70532578 None:intergenic
GCTGCAATGGCCGCAGCATT+GGG 0.311225 1_4:-70532363 None:intergenic
GGTTTACCTCCTGGAATAAC+TGG 0.311464 1_4:+70532399 Msa0182110:CDS
AAGCATGCTACCTCGCTTTC+TGG 0.321751 1_4:+70533706 Msa0182110:CDS
TGGTTCCATGCTCCTCTAGA+AGG 0.326729 1_4:-70533591 None:intergenic
CCTTAGATTCAGTCTTCAAT+TGG 0.336895 1_4:+70528043 Msa0182110:five_prime_UTR
CCAATTGAAGACTGAATCTA+AGG 0.339157 1_4:-70528043 None:intergenic
TACTGCAAGAACTGCACTTC+AGG 0.342948 1_4:+70531088 Msa0182110:CDS
CAGAAGGAACGTCTTGCATT+TGG 0.346584 1_4:-70529548 None:intergenic
TCTGTTCTGTAGGGAGATTT+GGG 0.347660 1_4:-70531557 None:intergenic
ATTGGTGAAAGTTGAGTCTT+AGG 0.365812 1_4:+70534042 Msa0182110:three_prime_UTR
AACTCTGTTGTGATTGATAC+TGG 0.373607 1_4:-70531061 None:intergenic
TCAGCACCTTGTGTTATGTT+TGG 0.381551 1_4:-70533430 None:intergenic
AGGAAGCATGTATGGTGTTC+AGG 0.389056 1_4:+70531762 Msa0182110:CDS
ATACAGTACATCCACTGTTA+TGG 0.393709 1_4:-70530177 None:intergenic
ATGTATGGTGTTCAGGGTTC+TGG 0.394858 1_4:+70531769 Msa0182110:CDS
AGCAAAGTATTTGAGATGAA+TGG 0.395330 1_4:+70533622 Msa0182110:CDS
GCTCTTGATGAGATGAAAAC+TGG 0.405496 1_4:-70529780 None:intergenic
AAGAGTACCTTATGCTTGGC+TGG 0.410645 1_4:-70529602 None:intergenic
TCATTTGTCCCAGTTATTCC+AGG 0.410874 1_4:-70532408 None:intergenic
CATCTTCAGTGATGTCTTGT+GGG 0.410989 1_4:-70533558 None:intergenic
GAATTGTAACTAAGAGAATT+CGG 0.415308 1_4:-70530139 None:intergenic
CTTGGAAACCATCTCCCATC+TGG 0.416528 1_4:-70532639 None:intergenic
TCTTCTTCATTATCTTGTAA+TGG 0.422111 1_4:+70533881 Msa0182110:three_prime_UTR
GTTTACAGATTAATTTATCA+TGG 0.422123 1_4:+70528448 Msa0182110:intron
GAATAACTGGGACAAATGAT+AGG 0.422703 1_4:+70532412 Msa0182110:CDS
GCAAAGTATTTGAGATGAAT+GGG 0.425279 1_4:+70533623 Msa0182110:CDS
GAAGATGAGAAAAGAAATGA+TGG 0.429477 1_4:-70533959 None:intergenic
ACGGGTTCTTAACATTGTTA+AGG 0.432457 1_4:-70533773 None:intergenic
GTCATTCATGTTCGAAATGT+GGG 0.433953 1_4:+70528485 Msa0182110:CDS
CTTAGATTCAGTCTTCAATT+GGG 0.436259 1_4:+70528044 Msa0182110:five_prime_UTR
ACAAATGAATCATCTTCGTT+GGG 0.440370 1_4:-70533528 None:intergenic
CAGGGTTCTGGACCCAGGGC+AGG 0.442597 1_4:+70531781 Msa0182110:CDS
TGCTACCTCGCTTTCTGGCT+CGG 0.444036 1_4:+70533711 Msa0182110:CDS
ATTATAATAATGACCGTTCA+AGG 0.444162 1_4:+70531437 Msa0182110:CDS
AGATGGTTTCCAAGCTGAAC+TGG 0.446354 1_4:+70532648 Msa0182110:CDS
AGGTAGCATGCTTGCATACA+AGG 0.447408 1_4:-70533696 None:intergenic
TCAGTTTGAGACTGAGGATC+AGG 0.451143 1_4:+70533663 Msa0182110:CDS
GTGTTCAGGGTTCTGGACCC+AGG 0.453204 1_4:+70531776 Msa0182110:CDS
GGATTGAGAATACAACATAA+TGG 0.463057 1_4:-70534147 None:intergenic
TTATGATGGTTGCTGTCAGC+TGG 0.464841 1_4:+70531215 Msa0182110:CDS
CCGTTACTTCGGTTGTCCAC+GGG 0.466121 1_4:-70533791 None:intergenic
GGCCTGCCTTTCTGTTCTGT+AGG 0.467800 1_4:-70531567 None:intergenic
CGAACATGAATGACCTTGGA+AGG 0.468919 1_4:-70528476 None:intergenic
TATATTCTGCAATTGAGAAT+AGG 0.470609 1_4:-70533746 None:intergenic
GACAAATGAATCATCTTCGT+TGG 0.470970 1_4:-70533529 None:intergenic
TACAGTACATCCACTGTTAT+GGG 0.471701 1_4:-70530176 None:intergenic
TAGGGTCGCAATATTTATGA+TGG 0.475560 1_4:+70531201 Msa0182110:intron
CAGCTTGGATATGGTGATGC+AGG 0.477074 1_4:+70531742 Msa0182110:intron
ACCGTTACTTCGGTTGTCCA+CGG 0.477723 1_4:-70533792 None:intergenic
AATTCACTTGTAATTCATCA+AGG 0.483108 1_4:-70531417 None:intergenic
TCTGTGAAACAGCTTGGATA+TGG 0.488413 1_4:+70531733 Msa0182110:intron
GTAACTAAGAGAATTCGGTT+TGG 0.488756 1_4:-70530134 None:intergenic
GTTAAATTTAGCACCTGCCC+TGG 0.490169 1_4:-70531794 None:intergenic
TCTTCATTATCTTGTAATGG+TGG 0.490760 1_4:+70533884 Msa0182110:three_prime_UTR
TACTAACATAATGTAGAGTA+GGG 0.492586 1_4:+70534005 Msa0182110:three_prime_UTR
TTACTAACATAATGTAGAGT+AGG 0.492786 1_4:+70534004 Msa0182110:three_prime_UTR
GCCTGCCTTTCTGTTCTGTA+GGG 0.494453 1_4:-70531566 None:intergenic
GTTGAGTCTTAGGAATAGAA+AGG 0.494469 1_4:+70534052 Msa0182110:three_prime_UTR
AAATAAAGGTGGTGAAAAGA+AGG 0.495349 1_4:-70534089 None:intergenic
ATCTGGATAAGTGCATGATC+TGG 0.502751 1_4:-70532622 None:intergenic
AGTCTTAGGAATAGAAAGGA+GGG 0.504282 1_4:+70534056 Msa0182110:three_prime_UTR
GAGTCTTAGGAATAGAAAGG+AGG 0.506714 1_4:+70534055 Msa0182110:three_prime_UTR
GGAAGCATGTATGGTGTTCA+GGG 0.508233 1_4:+70531763 Msa0182110:CDS
AGCTTTGTGATGACTCCAAA+AGG 0.509921 1_4:-70529363 None:intergenic
AGCTAAGAGTACCTTATGCT+TGG 0.512139 1_4:-70529606 None:intergenic
GTGACATTTCAGAAGTCAGC+TGG 0.518294 1_4:+70530236 Msa0182110:CDS
CCTCAGTCTCAAACTGAACC+AGG 0.518672 1_4:-70533657 None:intergenic
GGTGATGCAGGAAGCATGTA+TGG 0.523701 1_4:+70531754 Msa0182110:CDS
TCATCTTCAGTGATGTCTTG+TGG 0.524428 1_4:-70533559 None:intergenic
ACAAGGATTCTGAATTTGGA+AGG 0.525674 1_4:+70533832 Msa0182110:three_prime_UTR
GCACTTATCCAGATGGGAGA+TGG 0.531925 1_4:+70532631 Msa0182110:CDS
TATCATGGCTGAACCTTCCA+AGG 0.532831 1_4:+70528463 Msa0182110:exon
CCCGTGGACAACCGAAGTAA+CGG 0.532904 1_4:+70533791 Msa0182110:three_prime_UTR
AGAGTACCTTATGCTTGGCT+GGG 0.540483 1_4:-70529601 None:intergenic
ATTTCGAACATGAATGACCT+TGG 0.541812 1_4:-70528480 None:intergenic
TAGCAGCGTTACGATTAAAA+CGG 0.543089 1_4:-70533483 None:intergenic
GAAACACCCAGCCAAGCATA+AGG 0.545572 1_4:+70529595 Msa0182110:CDS
TGTTCAGGGTTCTGGACCCA+GGG 0.546711 1_4:+70531777 Msa0182110:CDS
TCCCTACAGAACAGAAAGGC+AGG 0.547542 1_4:+70531565 Msa0182110:CDS
AAATACTTTGCTATTGACAA+TGG 0.551736 1_4:-70533611 None:intergenic
GGTCATTCATGTTCGAAATG+TGG 0.557701 1_4:+70528484 Msa0182110:CDS
TTAAATTTAGCACCTGCCCT+GGG 0.559061 1_4:-70531793 None:intergenic
GAGCATAACAACCGTTACTT+CGG 0.568668 1_4:-70533802 None:intergenic
AGTGTACAGCCAGTTCAGCT+TGG 0.569092 1_4:-70532657 None:intergenic
AAGATGAGAAAAGAAATGAT+GGG 0.570192 1_4:-70533958 None:intergenic
AGTGATGTCTTGTGGGAGTG+TGG 0.570311 1_4:-70533551 None:intergenic
TGTAAAGCACTAACTGCAGA+AGG 0.572096 1_4:-70529564 None:intergenic
AGATCATGCACTTATCCAGA+TGG 0.574543 1_4:+70532624 Msa0182110:CDS
CCTTTCAGTCGGATATCCAC+AGG 0.574783 1_4:+70531892 Msa0182110:intron
GAATGGGAAGAAACAAGGCC+TGG 0.576914 1_4:+70533639 Msa0182110:CDS
GGTTCCATGCTCCTCTAGAA+GGG 0.591822 1_4:-70533590 None:intergenic
GAGATGAATGGGAAGAAACA+AGG 0.597286 1_4:+70533634 Msa0182110:CDS
CCTGGTTCAGTTTGAGACTG+AGG 0.597497 1_4:+70533657 Msa0182110:CDS
GATCATGCACTTATCCAGAT+GGG 0.599793 1_4:+70532625 Msa0182110:CDS
AGAGACTGAATCACCTTGAA+CGG 0.607191 1_4:-70531450 None:intergenic
AATTACCGAGCCAGAAAGCG+AGG 0.607510 1_4:-70533716 None:intergenic
ACTGGCTGTACACTTTCTGA+AGG 0.611721 1_4:+70532666 Msa0182110:CDS
TGAGATTGTGACCCTTCTAG+AGG 0.616426 1_4:+70533579 Msa0182110:CDS
AAGTCAAGGACGAGGAGATG+AGG 0.618331 1_4:+70529819 Msa0182110:CDS
GTCTTAGGAATAGAAAGGAG+GGG 0.621041 1_4:+70534057 Msa0182110:three_prime_UTR
GTGACCCTTCTAGAGGAGCA+TGG 0.626740 1_4:+70533586 Msa0182110:CDS
AATCTCCCTACAGAACAGAA+AGG 0.630603 1_4:+70531561 Msa0182110:CDS
AGATGAGAAAAGAAATGATG+GGG 0.635644 1_4:-70533957 None:intergenic
GTTTACCTCCTGGAATAACT+GGG 0.639926 1_4:+70532400 Msa0182110:CDS
GTTGTTTGATAAGCGACTAG+AGG 0.641453 1_4:+70533390 Msa0182110:CDS
ACAACAATAGATCAAAGTCA+AGG 0.643404 1_4:+70529805 Msa0182110:CDS
ATTGAAGACTGAATCTAAGG+AGG 0.644719 1_4:-70528040 None:intergenic
GGTAGCATGCTTGCATACAA+GGG 0.647100 1_4:-70533695 None:intergenic
TGTTATGCTCAGTAGAGACA+AGG 0.655812 1_4:+70533815 Msa0182110:three_prime_UTR
CAAACGAAACATACTTGTGG+AGG 0.658477 1_4:-70531588 None:intergenic
TTTGTCCCAGTTATTCCAGG+AGG 0.658977 1_4:-70532405 None:intergenic
CAAATGAATCATCTTCGTTG+GGG 0.661543 1_4:-70533527 None:intergenic
TCGTTGGGGAGCAGCAATAG+CGG 0.661679 1_4:-70533513 None:intergenic
TCATTCATGTTCGAAATGTG+GGG 0.666929 1_4:+70528486 Msa0182110:CDS
TTAACAATGTTAAGAACCCG+TGG 0.679719 1_4:+70533775 Msa0182110:three_prime_UTR
ATAGATCAAAGTCAAGGACG+AGG 0.680422 1_4:+70529811 Msa0182110:CDS
AAGCATCCAAACATAACACA+AGG 0.689131 1_4:+70533424 Msa0182110:CDS
ACTGTAGATGCCCAATGCTG+CGG 0.690338 1_4:+70532353 Msa0182110:intron
CGTGCTCTATCCCATAACAG+TGG 0.694871 1_4:+70530166 Msa0182110:CDS
ACTAACATAATGTAGAGTAG+GGG 0.698565 1_4:+70534006 Msa0182110:three_prime_UTR
TGTGGGGCACGAAATATCCG+AGG 0.714184 1_4:+70528502 Msa0182110:CDS
TAGTCGCTTATCAAACAACA+TGG 0.721208 1_4:-70533386 None:intergenic
ATCTTCTCCACAGATCCATG+AGG 0.742999 1_4:-70530212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAAAAAATAAAAAT+TGG - chr1_4:70527993-70528012 None:intergenic 0.0%
!!! TATTTTATAGCTTTTTTTTT+TGG + chr1_4:70528193-70528212 Msa0182110:intron 10.0%
!!! ATTTTATAGCTTTTTTTTTT+GGG + chr1_4:70528194-70528213 Msa0182110:intron 10.0%
!!! TCTAATTATCTTTTTATTTT+AGG + chr1_4:70529740-70529759 Msa0182110:intron 10.0%
!!! CTAATTATCTTTTTATTTTA+GGG + chr1_4:70529741-70529760 Msa0182110:intron 10.0%
!!! TAATTATCTTTTTATTTTAG+GGG + chr1_4:70529742-70529761 Msa0182110:intron 10.0%
!!! TTTTTTTTTTTTATGTTTAG+CGG + chr1_4:70530793-70530812 Msa0182110:intron 10.0%
!!! TTTTTTTTTTAAATGTTTAG+TGG + chr1_4:70530863-70530882 Msa0182110:intron 10.0%
!!! TTTGTAATTACATTTTTATA+TGG + chr1_4:70530923-70530942 Msa0182110:intron 10.0%
!!! ATTTACTTTAATTTCTTATA+TGG + chr1_4:70531374-70531393 Msa0182110:intron 10.0%
!!! AATTGTTGTGTTTTTTTTTT+GGG + chr1_4:70528618-70528637 Msa0182110:intron 15.0%
!! TTATGTTCATTTACAATTAT+AGG + chr1_4:70529225-70529244 Msa0182110:intron 15.0%
!!! AATTATCTTTTTATTTTAGG+GGG + chr1_4:70529743-70529762 Msa0182110:intron 15.0%
!! ATTCAGAAAAAAACTTAAAA+GGG - chr1_4:70530301-70530320 None:intergenic 15.0%
!! AATTCAGAAAAAAACTTAAA+AGG - chr1_4:70530302-70530321 None:intergenic 15.0%
!!! TTTTTTTTTTTATGTTTAGC+GGG + chr1_4:70530794-70530813 Msa0182110:intron 15.0%
!! AATTAAAGTAAATAAGAGAA+AGG - chr1_4:70531367-70531386 None:intergenic 15.0%
!! AAAAAATTTCACAAATTGAT+TGG - chr1_4:70532079-70532098 None:intergenic 15.0%
!! AAAAAAATAAGAGAATAGAA+CGG - chr1_4:70532307-70532326 None:intergenic 15.0%
!! TTATAATTAAATATTCAGCA+AGG - chr1_4:70532707-70532726 None:intergenic 15.0%
!! GAATATTTAATTATAATACC+AGG + chr1_4:70532711-70532730 Msa0182110:intron 15.0%
!!! ATTATTTTCTTAATTTTGGT+CGG + chr1_4:70532816-70532835 Msa0182110:intron 15.0%
!! ATTTAAGTAAATGATTTACA+TGG - chr1_4:70532983-70533002 None:intergenic 15.0%
!! ACTTTGTTAAAAAAAAAATC+AGG - chr1_4:70533133-70533152 None:intergenic 15.0%
!!! ATGTGTTAAATAATATGTTT+TGG + chr1_4:70533175-70533194 Msa0182110:intron 15.0%
!! AATCTTATAAATAGAAAAGA+GGG - chr1_4:70533332-70533351 None:intergenic 15.0%
!! GATTTAAAAATAAATAAAGG+TGG - chr1_4:70534103-70534122 None:intergenic 15.0%
!!! TTTAAATCATTGTTGTATTT+TGG + chr1_4:70534115-70534134 Msa0182110:three_prime_UTR 15.0%
!!! AATTCAACTAGAAAATTTTA+TGG - chr1_4:70534171-70534190 None:intergenic 15.0%
!!! ATTTTGTTTGAAAACAGAAT+TGG - chr1_4:70528156-70528175 None:intergenic 20.0%
!!! TGATAATGATAGTCATAAAT+TGG + chr1_4:70528323-70528342 Msa0182110:intron 20.0%
!! GTTTACAGATTAATTTATCA+TGG + chr1_4:70528448-70528467 Msa0182110:intron 20.0%
!!! CAATTGTTGTGTTTTTTTTT+TGG + chr1_4:70528617-70528636 Msa0182110:intron 20.0%
!!! TTTTAGATATTGATTGTGAT+TGG + chr1_4:70528746-70528765 Msa0182110:intron 20.0%
!! AAACAAACAATTTCATTTGA+AGG - chr1_4:70529429-70529448 None:intergenic 20.0%
!! CCAATTAATATTAAAATCTC+CGG + chr1_4:70529712-70529731 Msa0182110:intron 20.0%
!! AAAAGATAATTAGATTGTTC+CGG - chr1_4:70529734-70529753 None:intergenic 20.0%
!! AAGTATATGATAAAGAGAAA+AGG - chr1_4:70530036-70530055 None:intergenic 20.0%
!!! ACTTTTTTCTAAGTTGTTAA+TGG - chr1_4:70530446-70530465 None:intergenic 20.0%
!! TGTATTTGTAATAGTATGTT+TGG - chr1_4:70530589-70530608 None:intergenic 20.0%
!! ACTTCTAAATGAATTTCTAA+AGG + chr1_4:70530756-70530775 Msa0182110:intron 20.0%
!! AAAATGTAATTACAAAGCAA+GGG - chr1_4:70530919-70530938 None:intergenic 20.0%
!! AAAAATGTAATTACAAAGCA+AGG - chr1_4:70530920-70530939 None:intergenic 20.0%
!!! ATTTTATTTGATGCATGTAT+AGG + chr1_4:70530973-70530992 Msa0182110:intron 20.0%
!!! TAACATTTTCTTTCTGTTTT+TGG + chr1_4:70531116-70531135 Msa0182110:intron 20.0%
!!! CTAAATATTGATTGAAACTT+TGG + chr1_4:70531171-70531190 Msa0182110:intron 20.0%
!! TCTAAATAATTTCTGTGTAT+TGG + chr1_4:70531268-70531287 Msa0182110:intron 20.0%
!!! CTTTATTTATCTGTTATGAA+TGG + chr1_4:70531644-70531663 Msa0182110:intron 20.0%
!!! TTTATTTTGCTTTTCAAATC+TGG + chr1_4:70532141-70532160 Msa0182110:intron 20.0%
!!! TTATTTTGCTTTTCAAATCT+GGG + chr1_4:70532142-70532161 Msa0182110:intron 20.0%
!!! AGTATGATTTTTTAGAAATC+TGG + chr1_4:70532258-70532277 Msa0182110:intron 20.0%
!!! TTTAGTTTATTCAGATTTGA+TGG - chr1_4:70533284-70533303 None:intergenic 20.0%
!! CAATCTTATAAATAGAAAAG+AGG - chr1_4:70533333-70533352 None:intergenic 20.0%
!!! ATTTTCAATTTTGAGATGTA+GGG + chr1_4:70533361-70533380 Msa0182110:intron 20.0%
!!! CTTCAACTTTTTCTTTTAAC+TGG - chr1_4:70528350-70528369 None:intergenic 25.0%
!!! ATGTTTTTATGACTATGCTA+TGG + chr1_4:70528592-70528611 Msa0182110:intron 25.0%
! TCACTTTCTCTAATTATTAC+CGG + chr1_4:70528894-70528913 Msa0182110:intron 25.0%
! GCAAAAGTTATAAATCTTTC+AGG - chr1_4:70529305-70529324 None:intergenic 25.0%
!! GAAAGAAAAAACCTGATTTT+TGG - chr1_4:70529403-70529422 None:intergenic 25.0%
! TGATATCAAAACAATAGTTG+TGG - chr1_4:70529648-70529667 None:intergenic 25.0%
!!! CCGGAGATTTTAATATTAAT+TGG - chr1_4:70529715-70529734 None:intergenic 25.0%
! ATAACAATACAAAGATCTAG+GGG - chr1_4:70529957-70529976 None:intergenic 25.0%
! GATAACAATACAAAGATCTA+GGG - chr1_4:70529958-70529977 None:intergenic 25.0%
! AGATAACAATACAAAGATCT+AGG - chr1_4:70529959-70529978 None:intergenic 25.0%
! GATCTTTGTATTGTTATCTT+AGG + chr1_4:70529960-70529979 Msa0182110:intron 25.0%
! GAATTGTAACTAAGAGAATT+CGG - chr1_4:70530142-70530161 None:intergenic 25.0%
!!! AATTTTAACAGAGTGAATTG+AGG + chr1_4:70530318-70530337 Msa0182110:intron 25.0%
!! GTATGTTTGGAATATATGAA+GGG - chr1_4:70530576-70530595 None:intergenic 25.0%
!! AGTATGTTTGGAATATATGA+AGG - chr1_4:70530577-70530596 None:intergenic 25.0%
! TTGAATAAGTATAAGCATAG+TGG + chr1_4:70530643-70530662 Msa0182110:intron 25.0%
!! TGATGTTGTTTGTATGTAAT+AGG + chr1_4:70530710-70530729 Msa0182110:intron 25.0%
!! TTGAAACTTTGGAAATTTCT+AGG + chr1_4:70531182-70531201 Msa0182110:intron 25.0%
!! TGAAACTTTGGAAATTTCTA+GGG + chr1_4:70531183-70531202 Msa0182110:intron 25.0%
! AGTAAATAAGAGAAAGGAAA+AGG - chr1_4:70531361-70531380 None:intergenic 25.0%
! AATTCACTTGTAATTCATCA+AGG - chr1_4:70531420-70531439 None:intergenic 25.0%
! ATTATAATAATGACCGTTCA+AGG + chr1_4:70531437-70531456 Msa0182110:CDS 25.0%
!!! CTAAATTTAACTGATTTGGT+TGG + chr1_4:70531806-70531825 Msa0182110:intron 25.0%
! AAAAATGTGTAATGGTTGTA+AGG + chr1_4:70532017-70532036 Msa0182110:intron 25.0%
! AAACAAATTTCGAGCTAAAT+AGG - chr1_4:70532517-70532536 None:intergenic 25.0%
! TTTATACAACGATAAATCTC+TGG - chr1_4:70532797-70532816 None:intergenic 25.0%
! TATTCCACACAATATACAAA+GGG - chr1_4:70533055-70533074 None:intergenic 25.0%
! TTATTCCACACAATATACAA+AGG - chr1_4:70533056-70533075 None:intergenic 25.0%
!! AGGATCTATTTTATAAGTAG+AGG + chr1_4:70533088-70533107 Msa0182110:intron 25.0%
!!! GATTTTCAATTTTGAGATGT+AGG + chr1_4:70533360-70533379 Msa0182110:intron 25.0%
!!! AAATACTTTGCTATTGACAA+TGG - chr1_4:70533614-70533633 None:intergenic 25.0%
! TATATTCTGCAATTGAGAAT+AGG - chr1_4:70533749-70533768 None:intergenic 25.0%
! TCTTCTTCATTATCTTGTAA+TGG + chr1_4:70533881-70533900 Msa0182110:three_prime_UTR 25.0%
! AAGATGAGAAAAGAAATGAT+GGG - chr1_4:70533961-70533980 None:intergenic 25.0%
! TTACTAACATAATGTAGAGT+AGG + chr1_4:70534004-70534023 Msa0182110:three_prime_UTR 25.0%
! TACTAACATAATGTAGAGTA+GGG + chr1_4:70534005-70534024 Msa0182110:three_prime_UTR 25.0%
! ATACAACATAATGGCATATT+TGG - chr1_4:70534141-70534160 None:intergenic 25.0%
CTTAGATTCAGTCTTCAATT+GGG + chr1_4:70528044-70528063 Msa0182110:five_prime_UTR 30.0%
! TGAAAACAGAATTGGTGATT+TGG - chr1_4:70528148-70528167 None:intergenic 30.0%
!! TTTTAGAAATTTCTTCGCAG+TGG + chr1_4:70528709-70528728 Msa0182110:intron 30.0%
CGCACATTCAAAACAAAAAA+TGG - chr1_4:70528775-70528794 None:intergenic 30.0%
!! ACTTTTTCTTAGACCATGAT+CGG + chr1_4:70529100-70529119 Msa0182110:intron 30.0%
!! CTTCAGTTATTTCAACCTTT+TGG + chr1_4:70529348-70529367 Msa0182110:CDS 30.0%
!! TGGAGCACTTTTAAATTCTA+AGG - chr1_4:70529453-70529472 None:intergenic 30.0%
! GTTAGTGCTTTACAGTTTTA+TGG + chr1_4:70529573-70529592 Msa0182110:CDS 30.0%
ATGATCTTTGTCATCACATA+CGG + chr1_4:70529667-70529686 Msa0182110:intron 30.0%
!!! TATCTTTTTATTTTAGGGGG+AGG + chr1_4:70529746-70529765 Msa0182110:intron 30.0%
ACAACAATAGATCAAAGTCA+AGG + chr1_4:70529805-70529824 Msa0182110:CDS 30.0%
!!! TATCAAGTTTTTTCTCCTCA+TGG + chr1_4:70530197-70530216 Msa0182110:CDS 30.0%
TTTGTATGTAATAGGCACAT+AGG + chr1_4:70530718-70530737 Msa0182110:intron 30.0%
ACGCATTATGCATGAATTAA+TGG + chr1_4:70530834-70530853 Msa0182110:intron 30.0%
AAAACAAGAACTAACAAGTC+CGG - chr1_4:70531147-70531166 None:intergenic 30.0%
GGATATTCAATTCTCAAAGT+AGG + chr1_4:70531236-70531255 Msa0182110:intron 30.0%
!! ATAATTTCTGTGTATTGGCT+TGG + chr1_4:70531273-70531292 Msa0182110:intron 30.0%
GGTGCTAAATTTAACTGATT+TGG + chr1_4:70531802-70531821 Msa0182110:intron 30.0%
ATATGAAAAATACTCACCTG+TGG - chr1_4:70531911-70531930 None:intergenic 30.0%
GTCACAGTTTGATATTATTC+TGG + chr1_4:70531940-70531959 Msa0182110:intron 30.0%
GCAACACTAAAAATGTGTAA+TGG + chr1_4:70532009-70532028 Msa0182110:intron 30.0%
GTAATGGTTGTAAGGTATAA+CGG + chr1_4:70532025-70532044 Msa0182110:intron 30.0%
! TTTTCAAATCTGGGTTTGAT+AGG + chr1_4:70532151-70532170 Msa0182110:intron 30.0%
TTTCAAATCTGGGTTTGATA+GGG + chr1_4:70532152-70532171 Msa0182110:intron 30.0%
!!! TGTTTTGAGTTTCTGTTTCT+TGG + chr1_4:70532189-70532208 Msa0182110:intron 30.0%
TCTCACAATGTTTCCATAAA+GGG - chr1_4:70532581-70532600 None:intergenic 30.0%
TTCTCACAATGTTTCCATAA+AGG - chr1_4:70532582-70532601 None:intergenic 30.0%
GTAAATTCATCAAGTAAACC+TGG - chr1_4:70532732-70532751 None:intergenic 30.0%
CAGCAAACAACAATTACTTA+TGG - chr1_4:70532756-70532775 None:intergenic 30.0%
TTCATCACAAGTTTCTTTGA+TGG + chr1_4:70532864-70532883 Msa0182110:intron 30.0%
AAATCACATTTCTCTTTCTC+TGG + chr1_4:70532944-70532963 Msa0182110:intron 30.0%
TGGAATAAGATTGCAATTGA+AGG + chr1_4:70533068-70533087 Msa0182110:intron 30.0%
TCAGTTGTAATATTCTGACA+TGG + chr1_4:70533242-70533261 Msa0182110:intron 30.0%
ACAAATGAATCATCTTCGTT+GGG - chr1_4:70533531-70533550 None:intergenic 30.0%
! AGCAAAGTATTTGAGATGAA+TGG + chr1_4:70533622-70533641 Msa0182110:CDS 30.0%
! GCAAAGTATTTGAGATGAAT+GGG + chr1_4:70533623-70533642 Msa0182110:CDS 30.0%
TCTTCATTATCTTGTAATGG+TGG + chr1_4:70533884-70533903 Msa0182110:three_prime_UTR 30.0%
AGATGAGAAAAGAAATGATG+GGG - chr1_4:70533960-70533979 None:intergenic 30.0%
GAAGATGAGAAAAGAAATGA+TGG - chr1_4:70533962-70533981 None:intergenic 30.0%
ACTAACATAATGTAGAGTAG+GGG + chr1_4:70534006-70534025 Msa0182110:three_prime_UTR 30.0%
AAATAAAGGTGGTGAAAAGA+AGG - chr1_4:70534092-70534111 None:intergenic 30.0%
GGATTGAGAATACAACATAA+TGG - chr1_4:70534150-70534169 None:intergenic 30.0%
ATTGAAGACTGAATCTAAGG+AGG - chr1_4:70528043-70528062 None:intergenic 35.0%
CCAATTGAAGACTGAATCTA+AGG - chr1_4:70528046-70528065 None:intergenic 35.0%
CCTTAGATTCAGTCTTCAAT+TGG + chr1_4:70528043-70528062 Msa0182110:five_prime_UTR 35.0%
ATTTCGAACATGAATGACCT+TGG - chr1_4:70528483-70528502 None:intergenic 35.0%
GTCATTCATGTTCGAAATGT+GGG + chr1_4:70528485-70528504 Msa0182110:CDS 35.0%
TCATTCATGTTCGAAATGTG+GGG + chr1_4:70528486-70528505 Msa0182110:CDS 35.0%
GAGAAAGAAAGTGAGAATCA+GGG - chr1_4:70528533-70528552 None:intergenic 35.0%
AGAGAAAGAAAGTGAGAATC+AGG - chr1_4:70528534-70528553 None:intergenic 35.0%
TTTCCTGATAAAAAGAGTCC+AGG - chr1_4:70528683-70528702 None:intergenic 35.0%
TGTGAAATAAATGCCGATCA+TGG - chr1_4:70529116-70529135 None:intergenic 35.0%
TCGACATGATTGGATAAGAA+TGG + chr1_4:70529152-70529171 Msa0182110:intron 35.0%
TGATTGGATAAGAATGGAGT+TGG + chr1_4:70529158-70529177 Msa0182110:intron 35.0%
AAATCATTCTGCAATCACAG+TGG - chr1_4:70529327-70529346 None:intergenic 35.0%
TGGATAAGTGCCTGTAAATA+CGG - chr1_4:70529531-70529550 None:intergenic 35.0%
TTAGGCTGTTACATTTCAGT+GGG + chr1_4:70529978-70529997 Msa0182110:intron 35.0%
AAGAGAAGAGATAGAGAGAA+AGG - chr1_4:70530072-70530091 None:intergenic 35.0%
GTAACTAAGAGAATTCGGTT+TGG - chr1_4:70530137-70530156 None:intergenic 35.0%
TACAGTACATCCACTGTTAT+GGG - chr1_4:70530179-70530198 None:intergenic 35.0%
ATACAGTACATCCACTGTTA+TGG - chr1_4:70530180-70530199 None:intergenic 35.0%
AGGGAAAGAAAGAAGAGAAA+GGG - chr1_4:70530282-70530301 None:intergenic 35.0%
AAGGGAAAGAAAGAAGAGAA+AGG - chr1_4:70530283-70530302 None:intergenic 35.0%
TAACAGTGTCCAAGTACTAA+TGG - chr1_4:70530421-70530440 None:intergenic 35.0%
! ATAAGCATAGTGGTGTCAAT+TGG + chr1_4:70530653-70530672 Msa0182110:intron 35.0%
TGTTATGCTACTATGAGAGT+TGG - chr1_4:70530688-70530707 None:intergenic 35.0%
AATAGGCACATAGGAGAAAA+AGG + chr1_4:70530727-70530746 Msa0182110:intron 35.0%
ATAGGCACATAGGAGAAAAA+GGG + chr1_4:70530728-70530747 Msa0182110:intron 35.0%
TACTTGCTTACGAACTTTGT+AGG + chr1_4:70531023-70531042 Msa0182110:intron 35.0%
AACTCTGTTGTGATTGATAC+TGG - chr1_4:70531064-70531083 None:intergenic 35.0%
!!! CTTTCTGTTTTTGGCTTTAC+CGG + chr1_4:70531125-70531144 Msa0182110:intron 35.0%
TAGGGTCGCAATATTTATGA+TGG + chr1_4:70531201-70531220 Msa0182110:intron 35.0%
AAGAGAAAGGAAAAGGTAGA+AGG - chr1_4:70531354-70531373 None:intergenic 35.0%
TTGGCTACAATCGTAAAACT+TGG - chr1_4:70532060-70532079 None:intergenic 35.0%
! AGTTTCTGTTTCTTGGACAA+TGG + chr1_4:70532196-70532215 Msa0182110:intron 35.0%
GAATAACTGGGACAAATGAT+AGG + chr1_4:70532412-70532431 Msa0182110:CDS 35.0%
!! AAAGAGAAAGCACTTACATC+AGG - chr1_4:70532465-70532484 None:intergenic 35.0%
! TTCAACTTGTTCTCCCTTTA+TGG + chr1_4:70532565-70532584 Msa0182110:CDS 35.0%
ACATTTCTCTTTCTCTGGTT+CGG + chr1_4:70532949-70532968 Msa0182110:intron 35.0%
TGATCCCTTTGTATATTGTG+TGG + chr1_4:70533048-70533067 Msa0182110:intron 35.0%
GTAGTACTAGTTGTTGTGTT+TGG + chr1_4:70533151-70533170 Msa0182110:intron 35.0%
! TTGATGGCACTAAACAATGT+TGG - chr1_4:70533268-70533287 None:intergenic 35.0%
TAGTCGCTTATCAAACAACA+TGG - chr1_4:70533389-70533408 None:intergenic 35.0%
AAGCATCCAAACATAACACA+AGG + chr1_4:70533424-70533443 Msa0182110:CDS 35.0%
TAGCAGCGTTACGATTAAAA+CGG - chr1_4:70533486-70533505 None:intergenic 35.0%
CAAATGAATCATCTTCGTTG+GGG - chr1_4:70533530-70533549 None:intergenic 35.0%
GACAAATGAATCATCTTCGT+TGG - chr1_4:70533532-70533551 None:intergenic 35.0%
ACGGGTTCTTAACATTGTTA+AGG - chr1_4:70533776-70533795 None:intergenic 35.0%
TTAACAATGTTAAGAACCCG+TGG + chr1_4:70533775-70533794 Msa0182110:three_prime_UTR 35.0%
AGAGACAAGGATTCTGAATT+TGG + chr1_4:70533828-70533847 Msa0182110:three_prime_UTR 35.0%
ACAAGGATTCTGAATTTGGA+AGG + chr1_4:70533832-70533851 Msa0182110:three_prime_UTR 35.0%
ATTGGTGAAAGTTGAGTCTT+AGG + chr1_4:70534042-70534061 Msa0182110:three_prime_UTR 35.0%
GTTGAGTCTTAGGAATAGAA+AGG + chr1_4:70534052-70534071 Msa0182110:three_prime_UTR 35.0%
AGTCTTAGGAATAGAAAGGA+GGG + chr1_4:70534056-70534075 Msa0182110:three_prime_UTR 35.0%
GGTCATTCATGTTCGAAATG+TGG + chr1_4:70528484-70528503 Msa0182110:CDS 40.0%
GAACTTGACATTGACCAAGA+GGG + chr1_4:70528640-70528659 Msa0182110:intron 40.0%
ACCAAGAGGGTGAATGAAAA+GGG + chr1_4:70528653-70528672 Msa0182110:intron 40.0%
! AGACCTGGACTCTTTTTATC+AGG + chr1_4:70528677-70528696 Msa0182110:intron 40.0%
TCGAATGTAATCACGTGTGT+CGG - chr1_4:70528869-70528888 None:intergenic 40.0%
CAATGTGTCAATGTCGTGTT+CGG + chr1_4:70528920-70528939 Msa0182110:intron 40.0%
! AGCTTTGTGATGACTCCAAA+AGG - chr1_4:70529366-70529385 None:intergenic 40.0%
GATGTTACGTGCCAAAAATC+AGG + chr1_4:70529389-70529408 Msa0182110:CDS 40.0%
AATGTGTGAGCCGTATTTAC+AGG + chr1_4:70529518-70529537 Msa0182110:intron 40.0%
! TGTAAAGCACTAACTGCAGA+AGG - chr1_4:70529567-70529586 None:intergenic 40.0%
!! AGCTAAGAGTACCTTATGCT+TGG - chr1_4:70529609-70529628 None:intergenic 40.0%
GCTCTTGATGAGATGAAAAC+TGG - chr1_4:70529783-70529802 None:intergenic 40.0%
ATAGATCAAAGTCAAGGACG+AGG + chr1_4:70529811-70529830 Msa0182110:CDS 40.0%
! TGTCGATTGCTTACAAAAGC+AGG + chr1_4:70529891-70529910 Msa0182110:intron 40.0%
CTTACAAAAGCAGGCAGAAT+TGG + chr1_4:70529900-70529919 Msa0182110:intron 40.0%
CTTAGGCTGTTACATTTCAG+TGG + chr1_4:70529977-70529996 Msa0182110:intron 40.0%
! TTTTTCTCCTCATGGATCTG+TGG + chr1_4:70530205-70530224 Msa0182110:CDS 40.0%
AGTGTCCAAGTACTAATGGT+GGG - chr1_4:70530417-70530436 None:intergenic 40.0%
TACGAACTTTGTAGGCTTTC+AGG + chr1_4:70531031-70531050 Msa0182110:intron 40.0%
AAGGAAAAGGTAGAAGGTTG+AGG - chr1_4:70531348-70531367 None:intergenic 40.0%
AGAGACTGAATCACCTTGAA+CGG - chr1_4:70531453-70531472 None:intergenic 40.0%
TCTGTTCTGTAGGGAGATTT+GGG - chr1_4:70531560-70531579 None:intergenic 40.0%
TTCTGTTCTGTAGGGAGATT+TGG - chr1_4:70531561-70531580 None:intergenic 40.0%
AATCTCCCTACAGAACAGAA+AGG + chr1_4:70531561-70531580 Msa0182110:CDS 40.0%
CAAACGAAACATACTTGTGG+AGG - chr1_4:70531591-70531610 None:intergenic 40.0%
CTCCACAAGTATGTTTCGTT+TGG + chr1_4:70531589-70531608 Msa0182110:intron 40.0%
AGCCAAACGAAACATACTTG+TGG - chr1_4:70531594-70531613 None:intergenic 40.0%
ACTTCGCAAAGATCAATGAG+AGG - chr1_4:70531673-70531692 None:intergenic 40.0%
TCATCTTCTGTGAAACAGCT+TGG + chr1_4:70531727-70531746 Msa0182110:intron 40.0%
TCTGTGAAACAGCTTGGATA+TGG + chr1_4:70531733-70531752 Msa0182110:intron 40.0%
TTAAATTTAGCACCTGCCCT+GGG - chr1_4:70531796-70531815 None:intergenic 40.0%
AATCTGGGTTTGATAGGGAA+AGG + chr1_4:70532157-70532176 Msa0182110:intron 40.0%
ATCTGGGTTTGATAGGGAAA+GGG + chr1_4:70532158-70532177 Msa0182110:intron 40.0%
GTTTACCTCCTGGAATAACT+GGG + chr1_4:70532400-70532419 Msa0182110:CDS 40.0%
TCATTTGTCCCAGTTATTCC+AGG - chr1_4:70532411-70532430 None:intergenic 40.0%
ATCTGGATAAGTGCATGATC+TGG - chr1_4:70532625-70532644 None:intergenic 40.0%
AGATCATGCACTTATCCAGA+TGG + chr1_4:70532624-70532643 Msa0182110:CDS 40.0%
GATCATGCACTTATCCAGAT+GGG + chr1_4:70532625-70532644 Msa0182110:CDS 40.0%
GTTGTTTGATAAGCGACTAG+AGG + chr1_4:70533390-70533409 Msa0182110:CDS 40.0%
TCAGCACCTTGTGTTATGTT+TGG - chr1_4:70533433-70533452 None:intergenic 40.0%
CATCTTCAGTGATGTCTTGT+GGG - chr1_4:70533561-70533580 None:intergenic 40.0%
TCATCTTCAGTGATGTCTTG+TGG - chr1_4:70533562-70533581 None:intergenic 40.0%
GAGATGAATGGGAAGAAACA+AGG + chr1_4:70533634-70533653 Msa0182110:CDS 40.0%
GAGCATAACAACCGTTACTT+CGG - chr1_4:70533805-70533824 None:intergenic 40.0%
TGTTATGCTCAGTAGAGACA+AGG + chr1_4:70533815-70533834 Msa0182110:three_prime_UTR 40.0%
!! AGGGGTGTAGATTTTGTGAT+TGG + chr1_4:70534024-70534043 Msa0182110:three_prime_UTR 40.0%
GAGTCTTAGGAATAGAAAGG+AGG + chr1_4:70534055-70534074 Msa0182110:three_prime_UTR 40.0%
GTCTTAGGAATAGAAAGGAG+GGG + chr1_4:70534057-70534076 Msa0182110:three_prime_UTR 40.0%
TATCATGGCTGAACCTTCCA+AGG + chr1_4:70528463-70528482 Msa0182110:exon 45.0%
CGAACATGAATGACCTTGGA+AGG - chr1_4:70528479-70528498 None:intergenic 45.0%
!! TGAGAATCAGGGAAGTACCT+CGG - chr1_4:70528522-70528541 None:intergenic 45.0%
GGAACTTGACATTGACCAAG+AGG + chr1_4:70528639-70528658 Msa0182110:intron 45.0%
GACCAAGAGGGTGAATGAAA+AGG + chr1_4:70528652-70528671 Msa0182110:intron 45.0%
! ACCCTTTTCATTCACCCTCT+TGG - chr1_4:70528657-70528676 None:intergenic 45.0%
GTGAATGAAAAGGGTAGACC+TGG + chr1_4:70528662-70528681 Msa0182110:intron 45.0%
CTTCTAATCAAAGCCGTGTC+TGG + chr1_4:70528834-70528853 Msa0182110:intron 45.0%
CGACATTGACACATTGACAC+CGG - chr1_4:70528916-70528935 None:intergenic 45.0%
TCTTCATGTCAGTGCTTCGT+TGG + chr1_4:70528987-70529006 Msa0182110:intron 45.0%
AGTGAAAGGACAGCACATCT+AGG - chr1_4:70529031-70529050 None:intergenic 45.0%
TGTGCTGTCCTTTCACTGAA+TGG + chr1_4:70529034-70529053 Msa0182110:intron 45.0%
TACTCGAGCCATTCAGTGAA+AGG - chr1_4:70529045-70529064 None:intergenic 45.0%
CAGCTTTCTGTCGACATGAT+TGG + chr1_4:70529142-70529161 Msa0182110:intron 45.0%
CAGAAGGAACGTCTTGCATT+TGG - chr1_4:70529551-70529570 None:intergenic 45.0%
! AGAGTACCTTATGCTTGGCT+GGG - chr1_4:70529604-70529623 None:intergenic 45.0%
!! AAGAGTACCTTATGCTTGGC+TGG - chr1_4:70529605-70529624 None:intergenic 45.0%
ATCTTCTCCACAGATCCATG+AGG - chr1_4:70530215-70530234 None:intergenic 45.0%
GTGACATTTCAGAAGTCAGC+TGG + chr1_4:70530236-70530255 Msa0182110:CDS 45.0%
!! CAAGTACTAATGGTGGGTGT+GGG - chr1_4:70530411-70530430 None:intergenic 45.0%
CAGTGTCCAAGTACTAATGG+TGG - chr1_4:70530418-70530437 None:intergenic 45.0%
! GTGGTGTCAATTGGTTCATG+TGG + chr1_4:70530662-70530681 Msa0182110:intron 45.0%
TACTGCAAGAACTGCACTTC+AGG + chr1_4:70531088-70531107 Msa0182110:CDS 45.0%
TTATGATGGTTGCTGTCAGC+TGG + chr1_4:70531215-70531234 Msa0182110:CDS 45.0%
TGAAGTCTCTGTGAAAGACG+AGG - chr1_4:70531533-70531552 None:intergenic 45.0%
! AGGAAGCATGTATGGTGTTC+AGG + chr1_4:70531762-70531781 Msa0182110:CDS 45.0%
! GGAAGCATGTATGGTGTTCA+GGG + chr1_4:70531763-70531782 Msa0182110:CDS 45.0%
ATGTATGGTGTTCAGGGTTC+TGG + chr1_4:70531769-70531788 Msa0182110:CDS 45.0%
GTTAAATTTAGCACCTGCCC+TGG - chr1_4:70531797-70531816 None:intergenic 45.0%
CTGAAAGGAGGGGGAAAAAA+CGG - chr1_4:70531880-70531899 None:intergenic 45.0%
! TTTTTCCCCCTCCTTTCAGT+CGG + chr1_4:70531881-70531900 Msa0182110:intron 45.0%
TGGATATCCGACTGAAAGGA+GGG - chr1_4:70531891-70531910 None:intergenic 45.0%
TCTGGGTTTGATAGGGAAAG+GGG + chr1_4:70532159-70532178 Msa0182110:intron 45.0%
GGTTTACCTCCTGGAATAAC+TGG + chr1_4:70532399-70532418 Msa0182110:CDS 45.0%
TTTGTCCCAGTTATTCCAGG+AGG - chr1_4:70532408-70532427 None:intergenic 45.0%
AGATGGTTTCCAAGCTGAAC+TGG + chr1_4:70532648-70532667 Msa0182110:CDS 45.0%
ACTGGCTGTACACTTTCTGA+AGG + chr1_4:70532666-70532685 Msa0182110:CDS 45.0%
TGAGATTGTGACCCTTCTAG+AGG + chr1_4:70533579-70533598 Msa0182110:CDS 45.0%
! TCAGTTTGAGACTGAGGATC+AGG + chr1_4:70533663-70533682 Msa0182110:CDS 45.0%
GGTAGCATGCTTGCATACAA+GGG - chr1_4:70533698-70533717 None:intergenic 45.0%
AGGTAGCATGCTTGCATACA+AGG - chr1_4:70533699-70533718 None:intergenic 45.0%
!! AATAAATAAATAAAATGAAA+TGG - chr1_4:70529473-70529492 None:intergenic 5.0%
!!! ATAAATTATTTTCTTAATTT+TGG + chr1_4:70532812-70532831 Msa0182110:intron 5.0%
!!! AATTTCTTAATTTATTTTAT+TGG + chr1_4:70533012-70533031 Msa0182110:intron 5.0%
!! AATGATTTAAAAATAAATAA+AGG - chr1_4:70534106-70534125 None:intergenic 5.0%
ATCAAAGCCGTGTCTGGTGT+CGG + chr1_4:70528840-70528859 Msa0182110:intron 50.0%
TGTCCATGCCAGTGCTTTGT+AGG + chr1_4:70528943-70528962 Msa0182110:intron 50.0%
GTCCATGCCAGTGCTTTGTA+GGG + chr1_4:70528944-70528963 Msa0182110:intron 50.0%
TCCATGCCAGTGCTTTGTAG+GGG + chr1_4:70528945-70528964 Msa0182110:intron 50.0%
GAAACACCCAGCCAAGCATA+AGG + chr1_4:70529595-70529614 Msa0182110:CDS 50.0%
AAGTCAAGGACGAGGAGATG+AGG + chr1_4:70529819-70529838 Msa0182110:CDS 50.0%
CTCAATGCTGTCCTGCTGTT+TGG + chr1_4:70530093-70530112 Msa0182110:intron 50.0%
CGTGCTCTATCCCATAACAG+TGG + chr1_4:70530166-70530185 Msa0182110:CDS 50.0%
!! CCAAGTACTAATGGTGGGTG+TGG - chr1_4:70530412-70530431 None:intergenic 50.0%
CCACACCCACCATTAGTACT+TGG + chr1_4:70530409-70530428 Msa0182110:intron 50.0%
!! CTGTGTATTGGCTTGGCTTG+TGG + chr1_4:70531280-70531299 Msa0182110:intron 50.0%
TCCCTACAGAACAGAAAGGC+AGG + chr1_4:70531565-70531584 Msa0182110:CDS 50.0%
GCCTGCCTTTCTGTTCTGTA+GGG - chr1_4:70531569-70531588 None:intergenic 50.0%
! CAGCTTGGATATGGTGATGC+AGG + chr1_4:70531742-70531761 Msa0182110:intron 50.0%
! GGTGATGCAGGAAGCATGTA+TGG + chr1_4:70531754-70531773 Msa0182110:CDS 50.0%
GATATCCGACTGAAAGGAGG+GGG - chr1_4:70531889-70531908 None:intergenic 50.0%
GGATATCCGACTGAAAGGAG+GGG - chr1_4:70531890-70531909 None:intergenic 50.0%
GTGGATATCCGACTGAAAGG+AGG - chr1_4:70531892-70531911 None:intergenic 50.0%
CCTGTGGATATCCGACTGAA+AGG - chr1_4:70531895-70531914 None:intergenic 50.0%
CCTTTCAGTCGGATATCCAC+AGG + chr1_4:70531892-70531911 Msa0182110:intron 50.0%
ACTGTAGATGCCCAATGCTG+CGG + chr1_4:70532353-70532372 Msa0182110:intron 50.0%
GCACTTATCCAGATGGGAGA+TGG + chr1_4:70532631-70532650 Msa0182110:CDS 50.0%
CTTGGAAACCATCTCCCATC+TGG - chr1_4:70532642-70532661 None:intergenic 50.0%
AGTGTACAGCCAGTTCAGCT+TGG - chr1_4:70532660-70532679 None:intergenic 50.0%
AGTGATGTCTTGTGGGAGTG+TGG - chr1_4:70533554-70533573 None:intergenic 50.0%
! GGTTCCATGCTCCTCTAGAA+GGG - chr1_4:70533593-70533612 None:intergenic 50.0%
TGGTTCCATGCTCCTCTAGA+AGG - chr1_4:70533594-70533613 None:intergenic 50.0%
GAATGGGAAGAAACAAGGCC+TGG + chr1_4:70533639-70533658 Msa0182110:CDS 50.0%
CCTCAGTCTCAAACTGAACC+AGG - chr1_4:70533660-70533679 None:intergenic 50.0%
! CCTGGTTCAGTTTGAGACTG+AGG + chr1_4:70533657-70533676 Msa0182110:CDS 50.0%
AAGCATGCTACCTCGCTTTC+TGG + chr1_4:70533706-70533725 Msa0182110:CDS 50.0%
AATTACCGAGCCAGAAAGCG+AGG - chr1_4:70533719-70533738 None:intergenic 50.0%
!! CGCTTTCTGGCTCGGTAATT+CGG + chr1_4:70533719-70533738 Msa0182110:CDS 50.0%
ACCGTTACTTCGGTTGTCCA+CGG - chr1_4:70533795-70533814 None:intergenic 50.0%
TGTGGGGCACGAAATATCCG+AGG + chr1_4:70528502-70528521 Msa0182110:CDS 55.0%
!! ACCCCTACAAAGCACTGGCA+TGG - chr1_4:70528949-70528968 None:intergenic 55.0%
CACACACCCCTACAAAGCAC+TGG - chr1_4:70528954-70528973 None:intergenic 55.0%
CAAGGACGAGGAGATGAGGT+TGG + chr1_4:70529823-70529842 Msa0182110:intron 55.0%
! TCCTGCTGTTTGGAACCCTC+TGG + chr1_4:70530103-70530122 Msa0182110:intron 55.0%
TCCAGAGGGTTCCAAACAGC+AGG - chr1_4:70530107-70530126 None:intergenic 55.0%
GGTTTGGCTGTGCATCCAGA+GGG - chr1_4:70530121-70530140 None:intergenic 55.0%
GGCCTGCCTTTCTGTTCTGT+AGG - chr1_4:70531570-70531589 None:intergenic 55.0%
!! TGTTCAGGGTTCTGGACCCA+GGG + chr1_4:70531777-70531796 Msa0182110:CDS 55.0%
!!! CGGCCATTGCAGCTGCTTTT+GGG + chr1_4:70532373-70532392 Msa0182110:CDS 55.0%
!!! GGCCATTGCAGCTGCTTTTG+GGG + chr1_4:70532374-70532393 Msa0182110:CDS 55.0%
!!! GCCATTGCAGCTGCTTTTGG+GGG + chr1_4:70532375-70532394 Msa0182110:CDS 55.0%
TCCCCCAAAAGCAGCTGCAA+TGG - chr1_4:70532379-70532398 None:intergenic 55.0%
!!! ATTGCAGCTGCTTTTGGGGG+AGG + chr1_4:70532378-70532397 Msa0182110:CDS 55.0%
TTTGGGGGAGGTTTACCTCC+TGG + chr1_4:70532390-70532409 Msa0182110:CDS 55.0%
TCGTTGGGGAGCAGCAATAG+CGG - chr1_4:70533516-70533535 None:intergenic 55.0%
! GTGACCCTTCTAGAGGAGCA+TGG + chr1_4:70533586-70533605 Msa0182110:CDS 55.0%
!! TGCTACCTCGCTTTCTGGCT+CGG + chr1_4:70533711-70533730 Msa0182110:CDS 55.0%
CCGTTACTTCGGTTGTCCAC+GGG - chr1_4:70533794-70533813 None:intergenic 55.0%
CCCGTGGACAACCGAAGTAA+CGG + chr1_4:70533791-70533810 Msa0182110:three_prime_UTR 55.0%
! TCGGTGTCCGACACCAGACA+CGG - chr1_4:70528850-70528869 None:intergenic 60.0%
! CGGTTTGGCTGTGCATCCAG+AGG - chr1_4:70530122-70530141 None:intergenic 60.0%
GAGTGCACGAGCATGGGTGT+GGG - chr1_4:70530389-70530408 None:intergenic 60.0%
! GTGTGGGAGTGCACGAGCAT+GGG - chr1_4:70530395-70530414 None:intergenic 60.0%
!! GTGTTCAGGGTTCTGGACCC+AGG + chr1_4:70531776-70531795 Msa0182110:CDS 60.0%
GCTGCAATGGCCGCAGCATT+GGG - chr1_4:70532366-70532385 None:intergenic 60.0%
AGCTGCAATGGCCGCAGCAT+TGG - chr1_4:70532367-70532386 None:intergenic 60.0%
!! GCGGCCATTGCAGCTGCTTT+TGG + chr1_4:70532372-70532391 Msa0182110:CDS 60.0%
GGAGTGCACGAGCATGGGTG+TGG - chr1_4:70530390-70530409 None:intergenic 65.0%
! GGTGTGGGAGTGCACGAGCA+TGG - chr1_4:70530396-70530415 None:intergenic 65.0%
!! CAGGGTTCTGGACCCAGGGC+AGG + chr1_4:70531781-70531800 Msa0182110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70527989 70534203 70527989 ID=Msa0182110;Name=Msa0182110
chr1_4 mRNA 70527989 70534203 70527989 ID=Msa0182110-mRNA-1;Parent=Msa0182110;Name=Msa0182110-mRNA-1;_AED=0.17;_eAED=0.17;_QI=157|1|1|1|0.92|0.86|15|432|443
chr1_4 exon 70527989 70528134 70527989 ID=Msa0182110-mRNA-1:exon:23550;Parent=Msa0182110-mRNA-1
chr1_4 exon 70528456 70528523 70528456 ID=Msa0182110-mRNA-1:exon:23551;Parent=Msa0182110-mRNA-1
chr1_4 exon 70529339 70529410 70529339 ID=Msa0182110-mRNA-1:exon:23552;Parent=Msa0182110-mRNA-1
chr1_4 exon 70529540 70529616 70529540 ID=Msa0182110-mRNA-1:exon:23553;Parent=Msa0182110-mRNA-1
chr1_4 exon 70529762 70529840 70529762 ID=Msa0182110-mRNA-1:exon:23554;Parent=Msa0182110-mRNA-1
chr1_4 exon 70530134 70530257 70530134 ID=Msa0182110-mRNA-1:exon:23555;Parent=Msa0182110-mRNA-1
chr1_4 exon 70531045 70531109 70531045 ID=Msa0182110-mRNA-1:exon:23556;Parent=Msa0182110-mRNA-1
chr1_4 exon 70531204 70531253 70531204 ID=Msa0182110-mRNA-1:exon:23557;Parent=Msa0182110-mRNA-1
chr1_4 exon 70531417 70531458 70531417 ID=Msa0182110-mRNA-1:exon:23558;Parent=Msa0182110-mRNA-1
chr1_4 exon 70531545 70531596 70531545 ID=Msa0182110-mRNA-1:exon:23559;Parent=Msa0182110-mRNA-1
chr1_4 exon 70531745 70531802 70531745 ID=Msa0182110-mRNA-1:exon:23560;Parent=Msa0182110-mRNA-1
chr1_4 exon 70531900 70531913 70531900 ID=Msa0182110-mRNA-1:exon:23561;Parent=Msa0182110-mRNA-1
chr1_4 exon 70532360 70532467 70532360 ID=Msa0182110-mRNA-1:exon:23562;Parent=Msa0182110-mRNA-1
chr1_4 exon 70532544 70532687 70532544 ID=Msa0182110-mRNA-1:exon:23563;Parent=Msa0182110-mRNA-1
chr1_4 exon 70533382 70534203 70533382 ID=Msa0182110-mRNA-1:exon:23564;Parent=Msa0182110-mRNA-1
chr1_4 five_prime_UTR 70527989 70528134 70527989 ID=Msa0182110-mRNA-1:five_prime_utr;Parent=Msa0182110-mRNA-1
chr1_4 five_prime_UTR 70528456 70528466 70528456 ID=Msa0182110-mRNA-1:five_prime_utr;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70528467 70528523 70528467 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70529339 70529410 70529339 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70529540 70529616 70529540 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70529762 70529840 70529762 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70530134 70530257 70530134 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70531045 70531109 70531045 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70531204 70531253 70531204 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70531417 70531458 70531417 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70531545 70531596 70531545 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70531745 70531802 70531745 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70531900 70531913 70531900 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70532360 70532467 70532360 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70532544 70532687 70532544 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 CDS 70533382 70533771 70533382 ID=Msa0182110-mRNA-1:cds;Parent=Msa0182110-mRNA-1
chr1_4 three_prime_UTR 70533772 70534203 70533772 ID=Msa0182110-mRNA-1:three_prime_utr;Parent=Msa0182110-mRNA-1
Gene Sequence

>Msa0182110

ATGGCTGAACCTTCCAAGGTCATTCATGTTCGAAATGTGGGGCACGAAATATCCGAGAATGATTTACTTCAGTTATTTCAACCTTTTGGAGTCATCACAAAGCTTGTGATGTTACGTGCCAAAAATCAGGCACTTATCCAAATGCAAGACGTTCCTTCTGCAGTTAGTGCTTTACAGTTTTATGGAAACACCCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCATCTCATCAAGAGCTAACAACAATAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTCTATCCCATAACAGTGGATGTACTGTATCAAGTTTTTTCTCCTCATGGATCTGTGGAGAAGATTGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACAACAGAGTTCTATTACTGCAAGAACTGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGATATTCAATTCTCAAACCTTGATGAATTACAAGTGAATTATAATAATGACCGTTCAAGAGACTTCACAAACCCAAATCTCCCTACAGAACAGAAAGGCAGGCCTCCACAACTTGGATATGGTGATGCAGGAAGCATGTATGGTGTTCAGGGTTCTGGACCCAGGGCAGTCGGATATCCACAGATGCCCAATGCTGCGGCCATTGCAGCTGCTTTTGGGGGAGGTTTACCTCCTGGAATAACTGGGACAAATGATAGGTGTACACTTCTTGTCTCAAATCTTAATCCTGATAGAATTGATGAAGACAAACTGTTCAACTTGTTCTCCCTTTATGGAAACATTGTGAGAATTAAACTTCTACGCAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCTGTACACTTTCTGAAGGGAGCCATGTTGTTTGATAAGCGACTAGAGGTCAACTTCTCGAAGCATCCAAACATAACACAAGGTGCTGACACACACGACTACAGCAACTCAAATCTCAACCGTTTTAATCGTAACGCTGCTAAAAACTACCGCTATTGCTGCTCCCCAACGAAGATGATTCATTTGTCCACACTCCCACAAGACATCACTGAAGATGAGATTGTGACCCTTCTAGAGGAGCATGGAACCATTGTCAATAGCAAAGTATTTGAGATGAATGGGAAGAAACAAGGCCTGGTTCAGTTTGAGACTGAGGATCAGGCTACTGAAGCCCTTGTATGCAAGCATGCTACCTCGCTTTCTGGCTCGGTAATTCGGATCTCCTATTCTCAATTGCAGAATATATGA

Protein sequence

>Msa0182110

MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALQFYGNTQPSIRGRNVYVQFSSHQELTTIDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGSMYGVQGSGPRAVGYPQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQATEALVCKHATSLSGSVIRISYSQLQNI*