AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182040 MtrunA17_Chr1g0201711 99.323 443 3 0 1 443 1 443 0.0 913
Msa0182040 MtrunA17_Chr6g0464571 78.104 443 91 1 1 443 1 437 0.0 730
Msa0182040 MtrunA17_Chr6g0464521 84.416 231 36 0 1 231 1 231 2.07e-144 412
Msa0182040 MtrunA17_Chr6g0464531 84.038 213 34 0 231 443 1 213 4.15e-127 366
Msa0182040 MtrunA17_Chr6g0464551 64.015 264 77 5 128 391 16 261 9.42e-111 328
Msa0182040 MtrunA17_Chr7g0217671 32.277 347 182 11 4 333 17 327 3.24e-44 161
Msa0182040 MtrunA17_Chr7g0217671 32.258 217 107 6 21 197 129 345 6.20e-20 92.0
Msa0182040 MtrunA17_Chr3g0126461 31.322 348 186 12 4 334 16 327 4.76e-40 150
Msa0182040 MtrunA17_Chr3g0126461 32.143 224 98 6 21 197 128 344 8.66e-24 103
Msa0182040 MtrunA17_Chr1g0158921 29.650 371 185 12 4 334 16 350 8.21e-33 129
Msa0182040 MtrunA17_Chr1g0158921 32.547 212 104 5 25 197 156 367 2.78e-23 101
Msa0182040 MtrunA17_Chr6g0453381 40.179 112 61 4 54 162 10 118 2.75e-19 83.6
Msa0182040 MtrunA17_Chr6g0453371 33.793 145 80 5 92 223 23 164 2.20e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182040 AT1G43190.2 82.658 444 64 2 1 443 1 432 0.0 751
Msa0182040 AT1G43190.1 82.658 444 64 2 1 443 1 432 0.0 751
Msa0182040 AT1G43190.3 82.207 444 64 3 1 443 1 430 0.0 742
Msa0182040 AT3G01150.1 31.319 364 196 12 4 348 15 343 1.28e-44 160
Msa0182040 AT3G01150.1 30.741 270 131 9 15 243 122 376 7.81e-22 97.4
Msa0182040 AT3G01150.3 32.424 330 175 10 4 320 15 309 7.47e-44 156
Msa0182040 AT3G01150.3 30.159 189 94 4 15 165 122 310 1.58e-14 74.7
Msa0182040 AT5G53180.1 31.034 348 187 12 4 334 16 327 5.03e-40 149
Msa0182040 AT5G53180.1 33.962 212 100 7 21 192 128 339 1.10e-24 105
Msa0182040 AT5G53180.6 33.493 209 100 6 23 192 1 209 3.94e-26 107
Msa0182040 AT5G53180.2 33.173 208 100 6 24 192 32 239 5.40e-25 105
Msa0182040 AT5G53180.4 33.173 208 100 6 24 192 33 240 5.88e-25 105
Msa0182040 AT5G53180.3 33.173 208 100 6 24 192 18 225 5.92e-25 105
Msa0182040 AT5G53180.5 46.154 104 54 2 91 192 126 229 4.10e-22 97.1
Msa0182040 AT3G01150.2 29.032 248 130 7 115 348 3 218 8.98e-22 95.1
Msa0182040 AT3G01150.2 31.034 261 124 9 24 243 6 251 2.22e-21 94.0
Msa0182040 AT3G01150.4 30.374 214 109 5 115 320 3 184 6.31e-21 90.5
Msa0182040 AT3G01150.4 30.556 180 87 4 24 165 6 185 2.25e-14 72.0

Find 135 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTGTTCTCCCTTTA+TGG 0.035664 1_4:-70461696 Msa0182040:CDS
GCGGCCATTGCAGCTGCTTT+TGG 0.074456 1_4:-70461889 Msa0182040:CDS
TTTAAATCATTGTTGTATTT+TGG 0.136382 1_4:-70460146 Msa0182040:three_prime_UTR
TACGAACTTTGTAGGCTTTC+AGG 0.175411 1_4:-70463230 Msa0182040:intron
TTCTGTTCTGTAGGGAGATT+TGG 0.179215 1_4:+70462703 None:intergenic
AGAGACAAGGATTCTGAATT+TGG 0.219094 1_4:-70460433 Msa0182040:three_prime_UTR
ATACAACATAATGGCATATT+TGG 0.228189 1_4:+70460123 None:intergenic
CTTCAGTTATTTCAACCTTT+TGG 0.234793 1_4:-70464913 Msa0182040:CDS
CGCTTTCTGGCTCGGTAATT+CGG 0.274128 1_4:-70460542 Msa0182040:CDS
AGCTGCAATGGCCGCAGCAT+TGG 0.284533 1_4:+70461897 None:intergenic
TTCTCACAATGTTTCCATAA+AGG 0.300059 1_4:+70461682 None:intergenic
TCTCACAATGTTTCCATAAA+GGG 0.309290 1_4:+70461683 None:intergenic
GCTGCAATGGCCGCAGCATT+GGG 0.311225 1_4:+70461898 None:intergenic
GGTTTACCTCCTGGAATAAC+TGG 0.311464 1_4:-70461862 Msa0182040:CDS
AAGCATGCTACCTCGCTTTC+TGG 0.321751 1_4:-70460555 Msa0182040:CDS
TGGTTCCATGCTCCTCTAGA+AGG 0.326729 1_4:+70460670 None:intergenic
CCTTAGATTCAGTCTTCAAT+TGG 0.336895 1_4:-70466219 Msa0182040:five_prime_UTR
CCAATTGAAGACTGAATCTA+AGG 0.339157 1_4:+70466219 None:intergenic
TACTGCAAGAACTGCACTTC+AGG 0.342948 1_4:-70463173 Msa0182040:intron
CAGAAGGAACGTCTTGCATT+TGG 0.346584 1_4:+70464713 None:intergenic
TCTGTTCTGTAGGGAGATTT+GGG 0.347660 1_4:+70462704 None:intergenic
ATTGGTGAAAGTTGAGTCTT+AGG 0.365812 1_4:-70460219 Msa0182040:three_prime_UTR
AACTCTGTTGTGATTGATAC+TGG 0.373607 1_4:+70463200 None:intergenic
TCAGCACCTTGTGTTATGTT+TGG 0.381551 1_4:+70460831 None:intergenic
AGGAAGCATGTATGGTGTTC+AGG 0.389056 1_4:-70462499 Msa0182040:CDS
ATACAGTACATCCACTGTTA+TGG 0.393709 1_4:+70464084 None:intergenic
ATGTATGGTGTTCAGGGTTC+TGG 0.394858 1_4:-70462492 Msa0182040:CDS
AGCAAAGTATTTGAGATGAA+TGG 0.395330 1_4:-70460639 Msa0182040:CDS
GCTCTTGATGAGATGAAAAC+TGG 0.405496 1_4:+70464481 None:intergenic
AAGAGTACCTTATGCTTGGC+TGG 0.410645 1_4:+70464659 None:intergenic
TCATTTGTCCCAGTTATTCC+AGG 0.410874 1_4:+70461853 None:intergenic
CATCTTCAGTGATGTCTTGT+GGG 0.410989 1_4:+70460703 None:intergenic
GAATTGTAACTAAGAGAATT+CGG 0.415308 1_4:+70464122 None:intergenic
CTTGGAAACCATCTCCCATC+TGG 0.416528 1_4:+70461622 None:intergenic
TCTTCTTCATTATCTTGTAA+TGG 0.422111 1_4:-70460380 Msa0182040:three_prime_UTR
GTTTACAGATTAATTTATCA+TGG 0.422123 1_4:-70465813 Msa0182040:intron
GAATAACTGGGACAAATGAT+AGG 0.422703 1_4:-70461849 Msa0182040:CDS
GCAAAGTATTTGAGATGAAT+GGG 0.425279 1_4:-70460638 Msa0182040:CDS
GAAGATGAGAAAAGAAATGA+TGG 0.429477 1_4:+70460302 None:intergenic
ACGGGTTCTTAACATTGTTA+AGG 0.432457 1_4:+70460488 None:intergenic
GTCATTCATGTTCGAAATGT+GGG 0.433953 1_4:-70465776 Msa0182040:CDS
CTTAGATTCAGTCTTCAATT+GGG 0.436259 1_4:-70466218 Msa0182040:five_prime_UTR
ACAAATGAATCATCTTCGTT+GGG 0.440370 1_4:+70460733 None:intergenic
CAGGGTTCTGGACCCAGGGC+AGG 0.442597 1_4:-70462480 Msa0182040:intron
TGCTACCTCGCTTTCTGGCT+CGG 0.444036 1_4:-70460550 Msa0182040:CDS
ATTATAATAATGACCGTTCA+AGG 0.444162 1_4:-70462824 Msa0182040:intron
AGATGGTTTCCAAGCTGAAC+TGG 0.446354 1_4:-70461613 Msa0182040:CDS
AGGTAGCATGCTTGCATACA+AGG 0.447408 1_4:+70460565 None:intergenic
TCAGTTTGAGACTGAGGATC+AGG 0.451143 1_4:-70460598 Msa0182040:CDS
GTGTTCAGGGTTCTGGACCC+AGG 0.453204 1_4:-70462485 Msa0182040:CDS
GGATTGAGAATACAACATAA+TGG 0.463057 1_4:+70460114 None:intergenic
TTATGATGGTTGCTGTCAGC+TGG 0.464841 1_4:-70463046 Msa0182040:CDS
CCGTTACTTCGGTTGTCCAC+GGG 0.466121 1_4:+70460470 None:intergenic
GGCCTGCCTTTCTGTTCTGT+AGG 0.467800 1_4:+70462694 None:intergenic
CGAACATGAATGACCTTGGA+AGG 0.468919 1_4:+70465785 None:intergenic
TATATTCTGCAATTGAGAAT+AGG 0.470609 1_4:+70460515 None:intergenic
GACAAATGAATCATCTTCGT+TGG 0.470970 1_4:+70460732 None:intergenic
TACAGTACATCCACTGTTAT+GGG 0.471701 1_4:+70464085 None:intergenic
TAGGGTCGCAATATTTATGA+TGG 0.475560 1_4:-70463060 Msa0182040:CDS
CAGCTTGGATATGGTGATGC+AGG 0.477074 1_4:-70462519 Msa0182040:CDS
ACCGTTACTTCGGTTGTCCA+CGG 0.477723 1_4:+70460469 None:intergenic
AATTCACTTGTAATTCATCA+AGG 0.483108 1_4:+70462844 None:intergenic
TCTGTGAAACAGCTTGGATA+TGG 0.488413 1_4:-70462528 Msa0182040:intron
GTAACTAAGAGAATTCGGTT+TGG 0.488756 1_4:+70464127 None:intergenic
GTTAAATTTAGCACCTGCCC+TGG 0.490169 1_4:+70462467 None:intergenic
TCTTCATTATCTTGTAATGG+TGG 0.490760 1_4:-70460377 Msa0182040:three_prime_UTR
TACTAACATAATGTAGAGTA+GGG 0.492586 1_4:-70460256 Msa0182040:three_prime_UTR
TTACTAACATAATGTAGAGT+AGG 0.492786 1_4:-70460257 Msa0182040:three_prime_UTR
GCCTGCCTTTCTGTTCTGTA+GGG 0.494453 1_4:+70462695 None:intergenic
GTTGAGTCTTAGGAATAGAA+AGG 0.494469 1_4:-70460209 Msa0182040:three_prime_UTR
AAATAAAGGTGGTGAAAAGA+AGG 0.495349 1_4:+70460172 None:intergenic
ATCTGGATAAGTGCATGATC+TGG 0.502751 1_4:+70461639 None:intergenic
AGTCTTAGGAATAGAAAGGA+GGG 0.504282 1_4:-70460205 Msa0182040:three_prime_UTR
GAGTCTTAGGAATAGAAAGG+AGG 0.506714 1_4:-70460206 Msa0182040:three_prime_UTR
GGAAGCATGTATGGTGTTCA+GGG 0.508233 1_4:-70462498 Msa0182040:CDS
AGCTTTGTGATGACTCCAAA+AGG 0.509921 1_4:+70464898 None:intergenic
AGCTAAGAGTACCTTATGCT+TGG 0.512139 1_4:+70464655 None:intergenic
GTGACATTTCAGAAGTCAGC+TGG 0.518294 1_4:-70464025 Msa0182040:intron
CCTCAGTCTCAAACTGAACC+AGG 0.518672 1_4:+70460604 None:intergenic
GGTGATGCAGGAAGCATGTA+TGG 0.523701 1_4:-70462507 Msa0182040:CDS
TCATCTTCAGTGATGTCTTG+TGG 0.524428 1_4:+70460702 None:intergenic
ACAAGGATTCTGAATTTGGA+AGG 0.525674 1_4:-70460429 Msa0182040:three_prime_UTR
GCACTTATCCAGATGGGAGA+TGG 0.531925 1_4:-70461630 Msa0182040:CDS
TATCATGGCTGAACCTTCCA+AGG 0.532831 1_4:-70465798 Msa0182040:exon
CCCGTGGACAACCGAAGTAA+CGG 0.532904 1_4:-70460470 Msa0182040:three_prime_UTR
AGAGTACCTTATGCTTGGCT+GGG 0.540483 1_4:+70464660 None:intergenic
ATTTCGAACATGAATGACCT+TGG 0.541812 1_4:+70465781 None:intergenic
TAGCAGCGTTACGATTAAAA+CGG 0.543089 1_4:+70460778 None:intergenic
GAAACACCCAGCCAAGCATA+AGG 0.545572 1_4:-70464666 Msa0182040:intron
TGTTCAGGGTTCTGGACCCA+GGG 0.546711 1_4:-70462484 Msa0182040:CDS
TCCCTACAGAACAGAAAGGC+AGG 0.547542 1_4:-70462696 Msa0182040:CDS
AAATACTTTGCTATTGACAA+TGG 0.551736 1_4:+70460650 None:intergenic
GGTCATTCATGTTCGAAATG+TGG 0.557701 1_4:-70465777 Msa0182040:CDS
TTAAATTTAGCACCTGCCCT+GGG 0.559061 1_4:+70462468 None:intergenic
GAGCATAACAACCGTTACTT+CGG 0.568668 1_4:+70460459 None:intergenic
AGTGTACAGCCAGTTCAGCT+TGG 0.569092 1_4:+70461604 None:intergenic
AAGATGAGAAAAGAAATGAT+GGG 0.570192 1_4:+70460303 None:intergenic
AGTGATGTCTTGTGGGAGTG+TGG 0.570311 1_4:+70460710 None:intergenic
TGTAAAGCACTAACTGCAGA+AGG 0.572096 1_4:+70464697 None:intergenic
AGATCATGCACTTATCCAGA+TGG 0.574543 1_4:-70461637 Msa0182040:CDS
CCTTTCAGTCGGATATCCAC+AGG 0.574783 1_4:-70462369 Msa0182040:intron
GAATGGGAAGAAACAAGGCC+TGG 0.576914 1_4:-70460622 Msa0182040:CDS
GGTTCCATGCTCCTCTAGAA+GGG 0.591822 1_4:+70460671 None:intergenic
GAGATGAATGGGAAGAAACA+AGG 0.597286 1_4:-70460627 Msa0182040:CDS
CCTGGTTCAGTTTGAGACTG+AGG 0.597497 1_4:-70460604 Msa0182040:CDS
GATCATGCACTTATCCAGAT+GGG 0.599793 1_4:-70461636 Msa0182040:CDS
AGAGACTGAATCACCTTGAA+CGG 0.607191 1_4:+70462811 None:intergenic
AATTACCGAGCCAGAAAGCG+AGG 0.607510 1_4:+70460545 None:intergenic
ACTGGCTGTACACTTTCTGA+AGG 0.611721 1_4:-70461595 Msa0182040:intron
TGAGATTGTGACCCTTCTAG+AGG 0.616426 1_4:-70460682 Msa0182040:CDS
AAGTCAAGGACGAGGAGATG+AGG 0.618331 1_4:-70464442 Msa0182040:intron
GTCTTAGGAATAGAAAGGAG+GGG 0.621041 1_4:-70460204 Msa0182040:three_prime_UTR
GTGACCCTTCTAGAGGAGCA+TGG 0.626740 1_4:-70460675 Msa0182040:CDS
AATCTCCCTACAGAACAGAA+AGG 0.630603 1_4:-70462700 Msa0182040:CDS
AGATGAGAAAAGAAATGATG+GGG 0.635644 1_4:+70460304 None:intergenic
GTTTACCTCCTGGAATAACT+GGG 0.639926 1_4:-70461861 Msa0182040:CDS
GTTGTTTGATAAGCGACTAG+AGG 0.641453 1_4:-70460871 Msa0182040:CDS
ACAACAATAGATCAAAGTCA+AGG 0.643404 1_4:-70464456 Msa0182040:CDS
ATTGAAGACTGAATCTAAGG+AGG 0.644719 1_4:+70466222 None:intergenic
GGTAGCATGCTTGCATACAA+GGG 0.647100 1_4:+70460566 None:intergenic
TGTTATGCTCAGTAGAGACA+AGG 0.655812 1_4:-70460446 Msa0182040:three_prime_UTR
CAAACGAAACATACTTGTGG+AGG 0.658477 1_4:+70462673 None:intergenic
TTTGTCCCAGTTATTCCAGG+AGG 0.658977 1_4:+70461856 None:intergenic
CAAATGAATCATCTTCGTTG+GGG 0.661543 1_4:+70460734 None:intergenic
TCGTTGGGGAGCAGCAATAG+CGG 0.661679 1_4:+70460748 None:intergenic
TCATTCATGTTCGAAATGTG+GGG 0.666929 1_4:-70465775 Msa0182040:CDS
TTAACAATGTTAAGAACCCG+TGG 0.679719 1_4:-70460486 Msa0182040:three_prime_UTR
ATAGATCAAAGTCAAGGACG+AGG 0.680422 1_4:-70464450 Msa0182040:CDS
AAGCATCCAAACATAACACA+AGG 0.689131 1_4:-70460837 Msa0182040:CDS
ACTGTAGATGCCCAATGCTG+CGG 0.690338 1_4:-70461908 Msa0182040:intron
CGTGCTCTATCCCATAACAG+TGG 0.694871 1_4:-70464095 Msa0182040:CDS
ACTAACATAATGTAGAGTAG+GGG 0.698565 1_4:-70460255 Msa0182040:three_prime_UTR
TGTGGGGCACGAAATATCCG+AGG 0.714184 1_4:-70465759 Msa0182040:intron
TAGTCGCTTATCAAACAACA+TGG 0.721208 1_4:+70460875 None:intergenic
ATCTTCTCCACAGATCCATG+AGG 0.742999 1_4:+70464049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAAAAAATAAAAAT+TGG + chr1_4:70460084-70460103 None:intergenic 0.0%
!!! TATTTTATAGCTTTTTTTTT+TGG - chr1_4:70460284-70460303 Msa0182040:three_prime_UTR 10.0%
!!! ATTTTATAGCTTTTTTTTTT+GGG - chr1_4:70460285-70460304 Msa0182040:three_prime_UTR 10.0%
!!! TCTAATTATCTTTTTATTTT+AGG - chr1_4:70461832-70461851 Msa0182040:CDS 10.0%
!!! CTAATTATCTTTTTATTTTA+GGG - chr1_4:70461833-70461852 Msa0182040:CDS 10.0%
!!! TAATTATCTTTTTATTTTAG+GGG - chr1_4:70461834-70461853 Msa0182040:CDS 10.0%
!!! TTTTTTTTTTTTATGTTTAG+CGG - chr1_4:70462885-70462904 Msa0182040:intron 10.0%
!!! TTTTTTTTTTAAATGTTTAG+TGG - chr1_4:70462955-70462974 Msa0182040:intron 10.0%
!!! TTTGTAATTACATTTTTATA+TGG - chr1_4:70463015-70463034 Msa0182040:intron 10.0%
!!! ATTTACTTTAATTTCTTATA+TGG - chr1_4:70463466-70463485 Msa0182040:intron 10.0%
!!! TTTTATAGCTTTTTTTTTTG+GGG - chr1_4:70460286-70460305 Msa0182040:three_prime_UTR 15.0%
!!! AATTGTTGTGTTTTTTTTTT+GGG - chr1_4:70460710-70460729 Msa0182040:CDS 15.0%
!! TTATGTTCATTTACAATTAT+AGG - chr1_4:70461317-70461336 Msa0182040:intron 15.0%
!!! AATTATCTTTTTATTTTAGG+GGG - chr1_4:70461835-70461854 Msa0182040:CDS 15.0%
!! ATTCAGAAAAAAACTTAAAA+GGG + chr1_4:70462393-70462412 None:intergenic 15.0%
!! AATTCAGAAAAAAACTTAAA+AGG + chr1_4:70462394-70462413 None:intergenic 15.0%
!!! TTTTTTTTTTTATGTTTAGC+GGG - chr1_4:70462886-70462905 Msa0182040:intron 15.0%
!! AATTAAAGTAAATAAGAGAA+AGG + chr1_4:70463459-70463478 None:intergenic 15.0%
!! AAAAAATTTCACAAATTGAT+TGG + chr1_4:70464171-70464190 None:intergenic 15.0%
!! AAAAAAATAAGAGAATAGAA+CGG + chr1_4:70464399-70464418 None:intergenic 15.0%
!! TTATAATTAAATATTCAGCA+AGG + chr1_4:70464799-70464818 None:intergenic 15.0%
!! GAATATTTAATTATAATACC+AGG - chr1_4:70464803-70464822 Msa0182040:intron 15.0%
!!! ATTATTTTCTTAATTTTGGT+CGG - chr1_4:70464908-70464927 Msa0182040:CDS 15.0%
!! ATTTAAGTAAATGATTTACA+TGG + chr1_4:70465075-70465094 None:intergenic 15.0%
!! ACTTTGTTAAAAAAAAAATC+AGG + chr1_4:70465225-70465244 None:intergenic 15.0%
!!! ATGTGTTAAATAATATGTTT+TGG - chr1_4:70465267-70465286 Msa0182040:intron 15.0%
!! AATCTTATAAATAGAAAAGA+GGG + chr1_4:70465424-70465443 None:intergenic 15.0%
!! GATTTAAAAATAAATAAAGG+TGG + chr1_4:70466195-70466214 None:intergenic 15.0%
!!! TTTAAATCATTGTTGTATTT+TGG - chr1_4:70466207-70466226 Msa0182040:five_prime_UTR 15.0%
!!! AATTCAACTAGAAAATTTTA+TGG + chr1_4:70466263-70466282 None:intergenic 15.0%
!!! ATTTTGTTTGAAAACAGAAT+TGG + chr1_4:70460247-70460266 None:intergenic 20.0%
!!! TGATAATGATAGTCATAAAT+TGG - chr1_4:70460415-70460434 Msa0182040:three_prime_UTR 20.0%
!! GTTTACAGATTAATTTATCA+TGG - chr1_4:70460540-70460559 Msa0182040:CDS 20.0%
!!! CAATTGTTGTGTTTTTTTTT+TGG - chr1_4:70460709-70460728 Msa0182040:CDS 20.0%
!!! TTTTAGATATTGATTGTGAT+TGG - chr1_4:70460838-70460857 Msa0182040:CDS 20.0%
!! AAACAAACAATTTCATTTGA+AGG + chr1_4:70461521-70461540 None:intergenic 20.0%
!! CCAATTAATATTAAAATCTC+CGG - chr1_4:70461804-70461823 Msa0182040:intron 20.0%
!! AAAAGATAATTAGATTGTTC+CGG + chr1_4:70461826-70461845 None:intergenic 20.0%
!! AAGTATATGATAAAGAGAAA+AGG + chr1_4:70462128-70462147 None:intergenic 20.0%
!!! ACTTTTTTCTAAGTTGTTAA+TGG + chr1_4:70462538-70462557 None:intergenic 20.0%
!! TGTATTTGTAATAGTATGTT+TGG + chr1_4:70462681-70462700 None:intergenic 20.0%
!! ACTTCTAAATGAATTTCTAA+AGG - chr1_4:70462848-70462867 Msa0182040:intron 20.0%
!! AAAATGTAATTACAAAGCAA+GGG + chr1_4:70463011-70463030 None:intergenic 20.0%
!! AAAAATGTAATTACAAAGCA+AGG + chr1_4:70463012-70463031 None:intergenic 20.0%
!!! ATTTTATTTGATGCATGTAT+AGG - chr1_4:70463065-70463084 Msa0182040:intron 20.0%
!!! TAACATTTTCTTTCTGTTTT+TGG - chr1_4:70463208-70463227 Msa0182040:CDS 20.0%
!!! CTAAATATTGATTGAAACTT+TGG - chr1_4:70463263-70463282 Msa0182040:intron 20.0%
!! TCTAAATAATTTCTGTGTAT+TGG - chr1_4:70463360-70463379 Msa0182040:intron 20.0%
!!! CTTTATTTATCTGTTATGAA+TGG - chr1_4:70463736-70463755 Msa0182040:intron 20.0%
!!! TTTATTTTGCTTTTCAAATC+TGG - chr1_4:70464233-70464252 Msa0182040:intron 20.0%
!!! TTATTTTGCTTTTCAAATCT+GGG - chr1_4:70464234-70464253 Msa0182040:intron 20.0%
!!! AGTATGATTTTTTAGAAATC+TGG - chr1_4:70464350-70464369 Msa0182040:intron 20.0%
!!! TTTAGTTTATTCAGATTTGA+TGG + chr1_4:70465376-70465395 None:intergenic 20.0%
!! CAATCTTATAAATAGAAAAG+AGG + chr1_4:70465425-70465444 None:intergenic 20.0%
!!! ATTTTCAATTTTGAGATGTA+GGG - chr1_4:70465453-70465472 Msa0182040:intron 20.0%
!!! CTTCAACTTTTTCTTTTAAC+TGG + chr1_4:70460442-70460461 None:intergenic 25.0%
!!! ATGTTTTTATGACTATGCTA+TGG - chr1_4:70460684-70460703 Msa0182040:CDS 25.0%
! TCACTTTCTCTAATTATTAC+CGG - chr1_4:70460986-70461005 Msa0182040:intron 25.0%
! GCAAAAGTTATAAATCTTTC+AGG + chr1_4:70461397-70461416 None:intergenic 25.0%
!! GAAAGAAAAAACCTGATTTT+TGG + chr1_4:70461495-70461514 None:intergenic 25.0%
! TGATATCAAAACAATAGTTG+TGG + chr1_4:70461740-70461759 None:intergenic 25.0%
!!! CCGGAGATTTTAATATTAAT+TGG + chr1_4:70461807-70461826 None:intergenic 25.0%
! ATAACAATACAAAGATCTAG+GGG + chr1_4:70462049-70462068 None:intergenic 25.0%
! GATAACAATACAAAGATCTA+GGG + chr1_4:70462050-70462069 None:intergenic 25.0%
! AGATAACAATACAAAGATCT+AGG + chr1_4:70462051-70462070 None:intergenic 25.0%
! GATCTTTGTATTGTTATCTT+AGG - chr1_4:70462052-70462071 Msa0182040:intron 25.0%
! GAATTGTAACTAAGAGAATT+CGG + chr1_4:70462234-70462253 None:intergenic 25.0%
!!! AATTTTAACAGAGTGAATTG+AGG - chr1_4:70462410-70462429 Msa0182040:intron 25.0%
!! GTATGTTTGGAATATATGAA+GGG + chr1_4:70462668-70462687 None:intergenic 25.0%
!! AGTATGTTTGGAATATATGA+AGG + chr1_4:70462669-70462688 None:intergenic 25.0%
! TTGAATAAGTATAAGCATAG+TGG - chr1_4:70462735-70462754 Msa0182040:intron 25.0%
!! TGATGTTGTTTGTATGTAAT+AGG - chr1_4:70462802-70462821 Msa0182040:intron 25.0%
!! TTGAAACTTTGGAAATTTCT+AGG - chr1_4:70463274-70463293 Msa0182040:intron 25.0%
!! TGAAACTTTGGAAATTTCTA+GGG - chr1_4:70463275-70463294 Msa0182040:intron 25.0%
! AGTAAATAAGAGAAAGGAAA+AGG + chr1_4:70463453-70463472 None:intergenic 25.0%
! AATTCACTTGTAATTCATCA+AGG + chr1_4:70463512-70463531 None:intergenic 25.0%
! ATTATAATAATGACCGTTCA+AGG - chr1_4:70463529-70463548 Msa0182040:intron 25.0%
!!! CTAAATTTAACTGATTTGGT+TGG - chr1_4:70463898-70463917 Msa0182040:intron 25.0%
! AAAAATGTGTAATGGTTGTA+AGG - chr1_4:70464109-70464128 Msa0182040:CDS 25.0%
! AAACAAATTTCGAGCTAAAT+AGG + chr1_4:70464609-70464628 None:intergenic 25.0%
! TTTATACAACGATAAATCTC+TGG + chr1_4:70464889-70464908 None:intergenic 25.0%
! TATTCCACACAATATACAAA+GGG + chr1_4:70465147-70465166 None:intergenic 25.0%
! TTATTCCACACAATATACAA+AGG + chr1_4:70465148-70465167 None:intergenic 25.0%
!! AGGATCTATTTTATAAGTAG+AGG - chr1_4:70465180-70465199 Msa0182040:intron 25.0%
!!! GATTTTCAATTTTGAGATGT+AGG - chr1_4:70465452-70465471 Msa0182040:intron 25.0%
!!! AAATACTTTGCTATTGACAA+TGG + chr1_4:70465706-70465725 None:intergenic 25.0%
! TATATTCTGCAATTGAGAAT+AGG + chr1_4:70465841-70465860 None:intergenic 25.0%
! TCTTCTTCATTATCTTGTAA+TGG - chr1_4:70465973-70465992 Msa0182040:intron 25.0%
! AAGATGAGAAAAGAAATGAT+GGG + chr1_4:70466053-70466072 None:intergenic 25.0%
! TTACTAACATAATGTAGAGT+AGG - chr1_4:70466096-70466115 Msa0182040:intron 25.0%
! TACTAACATAATGTAGAGTA+GGG - chr1_4:70466097-70466116 Msa0182040:intron 25.0%
! ATACAACATAATGGCATATT+TGG + chr1_4:70466233-70466252 None:intergenic 25.0%
CTTAGATTCAGTCTTCAATT+GGG - chr1_4:70460135-70460154 Msa0182040:three_prime_UTR 30.0%
! TGAAAACAGAATTGGTGATT+TGG + chr1_4:70460239-70460258 None:intergenic 30.0%
!! TTTTAGAAATTTCTTCGCAG+TGG - chr1_4:70460801-70460820 Msa0182040:CDS 30.0%
CGCACATTCAAAACAAAAAA+TGG + chr1_4:70460867-70460886 None:intergenic 30.0%
!! ACTTTTTCTTAGACCATGAT+CGG - chr1_4:70461192-70461211 Msa0182040:intron 30.0%
!! CTTCAGTTATTTCAACCTTT+TGG - chr1_4:70461440-70461459 Msa0182040:intron 30.0%
!! TGGAGCACTTTTAAATTCTA+AGG + chr1_4:70461545-70461564 None:intergenic 30.0%
! GTTAGTGCTTTACAGTTTTA+TGG - chr1_4:70461665-70461684 Msa0182040:CDS 30.0%
ATGATCTTTGTCATCACATA+CGG - chr1_4:70461759-70461778 Msa0182040:intron 30.0%
!!! TATCTTTTTATTTTAGGGGG+AGG - chr1_4:70461838-70461857 Msa0182040:CDS 30.0%
ACAACAATAGATCAAAGTCA+AGG - chr1_4:70461897-70461916 Msa0182040:CDS 30.0%
!!! TATCAAGTTTTTTCTCCTCA+TGG - chr1_4:70462289-70462308 Msa0182040:intron 30.0%
TTTGTATGTAATAGGCACAT+AGG - chr1_4:70462810-70462829 Msa0182040:intron 30.0%
ACGCATTATGCATGAATTAA+TGG - chr1_4:70462926-70462945 Msa0182040:intron 30.0%
AAAACAAGAACTAACAAGTC+CGG + chr1_4:70463239-70463258 None:intergenic 30.0%
GGATATTCAATTCTCAAAGT+AGG - chr1_4:70463328-70463347 Msa0182040:intron 30.0%
!! ATAATTTCTGTGTATTGGCT+TGG - chr1_4:70463365-70463384 Msa0182040:intron 30.0%
GGTGCTAAATTTAACTGATT+TGG - chr1_4:70463894-70463913 Msa0182040:intron 30.0%
ATATGAAAAATACTCACCTG+TGG + chr1_4:70464003-70464022 None:intergenic 30.0%
GTCACAGTTTGATATTATTC+TGG - chr1_4:70464032-70464051 Msa0182040:CDS 30.0%
GCAACACTAAAAATGTGTAA+TGG - chr1_4:70464101-70464120 Msa0182040:CDS 30.0%
GTAATGGTTGTAAGGTATAA+CGG - chr1_4:70464117-70464136 Msa0182040:CDS 30.0%
! TTTTCAAATCTGGGTTTGAT+AGG - chr1_4:70464243-70464262 Msa0182040:intron 30.0%
TTTCAAATCTGGGTTTGATA+GGG - chr1_4:70464244-70464263 Msa0182040:intron 30.0%
!!! TGTTTTGAGTTTCTGTTTCT+TGG - chr1_4:70464281-70464300 Msa0182040:intron 30.0%
TCTCACAATGTTTCCATAAA+GGG + chr1_4:70464673-70464692 None:intergenic 30.0%
TTCTCACAATGTTTCCATAA+AGG + chr1_4:70464674-70464693 None:intergenic 30.0%
GTAAATTCATCAAGTAAACC+TGG + chr1_4:70464824-70464843 None:intergenic 30.0%
CAGCAAACAACAATTACTTA+TGG + chr1_4:70464848-70464867 None:intergenic 30.0%
TTCATCACAAGTTTCTTTGA+TGG - chr1_4:70464956-70464975 Msa0182040:intron 30.0%
AAATCACATTTCTCTTTCTC+TGG - chr1_4:70465036-70465055 Msa0182040:intron 30.0%
TGGAATAAGATTGCAATTGA+AGG - chr1_4:70465160-70465179 Msa0182040:intron 30.0%
TCAGTTGTAATATTCTGACA+TGG - chr1_4:70465334-70465353 Msa0182040:intron 30.0%
ACAAATGAATCATCTTCGTT+GGG + chr1_4:70465623-70465642 None:intergenic 30.0%
! AGCAAAGTATTTGAGATGAA+TGG - chr1_4:70465714-70465733 Msa0182040:intron 30.0%
! GCAAAGTATTTGAGATGAAT+GGG - chr1_4:70465715-70465734 Msa0182040:intron 30.0%
TCTTCATTATCTTGTAATGG+TGG - chr1_4:70465976-70465995 Msa0182040:intron 30.0%
AGATGAGAAAAGAAATGATG+GGG + chr1_4:70466052-70466071 None:intergenic 30.0%
GAAGATGAGAAAAGAAATGA+TGG + chr1_4:70466054-70466073 None:intergenic 30.0%
ACTAACATAATGTAGAGTAG+GGG - chr1_4:70466098-70466117 Msa0182040:intron 30.0%
AAATAAAGGTGGTGAAAAGA+AGG + chr1_4:70466184-70466203 None:intergenic 30.0%
GGATTGAGAATACAACATAA+TGG + chr1_4:70466242-70466261 None:intergenic 30.0%
ATTGAAGACTGAATCTAAGG+AGG + chr1_4:70460134-70460153 None:intergenic 35.0%
CCAATTGAAGACTGAATCTA+AGG + chr1_4:70460137-70460156 None:intergenic 35.0%
CCTTAGATTCAGTCTTCAAT+TGG - chr1_4:70460134-70460153 Msa0182040:three_prime_UTR 35.0%
ATTTCGAACATGAATGACCT+TGG + chr1_4:70460575-70460594 None:intergenic 35.0%
GTCATTCATGTTCGAAATGT+GGG - chr1_4:70460577-70460596 Msa0182040:CDS 35.0%
TCATTCATGTTCGAAATGTG+GGG - chr1_4:70460578-70460597 Msa0182040:CDS 35.0%
GAGAAAGAAAGTGAGAATCA+GGG + chr1_4:70460625-70460644 None:intergenic 35.0%
AGAGAAAGAAAGTGAGAATC+AGG + chr1_4:70460626-70460645 None:intergenic 35.0%
TTTCCTGATAAAAAGAGTCC+AGG + chr1_4:70460775-70460794 None:intergenic 35.0%
TGTGAAATAAATGCCGATCA+TGG + chr1_4:70461208-70461227 None:intergenic 35.0%
TCGACATGATTGGATAAGAA+TGG - chr1_4:70461244-70461263 Msa0182040:intron 35.0%
TGATTGGATAAGAATGGAGT+TGG - chr1_4:70461250-70461269 Msa0182040:intron 35.0%
AAATCATTCTGCAATCACAG+TGG + chr1_4:70461419-70461438 None:intergenic 35.0%
TGGATAAGTGCCTGTAAATA+CGG + chr1_4:70461623-70461642 None:intergenic 35.0%
TTAGGCTGTTACATTTCAGT+GGG - chr1_4:70462070-70462089 Msa0182040:intron 35.0%
AAGAGAAGAGATAGAGAGAA+AGG + chr1_4:70462164-70462183 None:intergenic 35.0%
GTAACTAAGAGAATTCGGTT+TGG + chr1_4:70462229-70462248 None:intergenic 35.0%
TACAGTACATCCACTGTTAT+GGG + chr1_4:70462271-70462290 None:intergenic 35.0%
ATACAGTACATCCACTGTTA+TGG + chr1_4:70462272-70462291 None:intergenic 35.0%
AGGGAAAGAAAGAAGAGAAA+GGG + chr1_4:70462374-70462393 None:intergenic 35.0%
AAGGGAAAGAAAGAAGAGAA+AGG + chr1_4:70462375-70462394 None:intergenic 35.0%
TAACAGTGTCCAAGTACTAA+TGG + chr1_4:70462513-70462532 None:intergenic 35.0%
! ATAAGCATAGTGGTGTCAAT+TGG - chr1_4:70462745-70462764 Msa0182040:intron 35.0%
TGTTATGCTACTATGAGAGT+TGG + chr1_4:70462780-70462799 None:intergenic 35.0%
AATAGGCACATAGGAGAAAA+AGG - chr1_4:70462819-70462838 Msa0182040:intron 35.0%
ATAGGCACATAGGAGAAAAA+GGG - chr1_4:70462820-70462839 Msa0182040:intron 35.0%
TACTTGCTTACGAACTTTGT+AGG - chr1_4:70463115-70463134 Msa0182040:intron 35.0%
AACTCTGTTGTGATTGATAC+TGG + chr1_4:70463156-70463175 None:intergenic 35.0%
!!! CTTTCTGTTTTTGGCTTTAC+CGG - chr1_4:70463217-70463236 Msa0182040:CDS 35.0%
TAGGGTCGCAATATTTATGA+TGG - chr1_4:70463293-70463312 Msa0182040:intron 35.0%
AAGAGAAAGGAAAAGGTAGA+AGG + chr1_4:70463446-70463465 None:intergenic 35.0%
TTGGCTACAATCGTAAAACT+TGG + chr1_4:70464152-70464171 None:intergenic 35.0%
! AGTTTCTGTTTCTTGGACAA+TGG - chr1_4:70464288-70464307 Msa0182040:intron 35.0%
GAATAACTGGGACAAATGAT+AGG - chr1_4:70464504-70464523 Msa0182040:intron 35.0%
!! AAAGAGAAAGCACTTACATC+AGG + chr1_4:70464557-70464576 None:intergenic 35.0%
! TTCAACTTGTTCTCCCTTTA+TGG - chr1_4:70464657-70464676 Msa0182040:intron 35.0%
ACATTTCTCTTTCTCTGGTT+CGG - chr1_4:70465041-70465060 Msa0182040:intron 35.0%
TGATCCCTTTGTATATTGTG+TGG - chr1_4:70465140-70465159 Msa0182040:intron 35.0%
GTAGTACTAGTTGTTGTGTT+TGG - chr1_4:70465243-70465262 Msa0182040:intron 35.0%
! TTGATGGCACTAAACAATGT+TGG + chr1_4:70465360-70465379 None:intergenic 35.0%
TAGTCGCTTATCAAACAACA+TGG + chr1_4:70465481-70465500 None:intergenic 35.0%
AAGCATCCAAACATAACACA+AGG - chr1_4:70465516-70465535 Msa0182040:intron 35.0%
TAGCAGCGTTACGATTAAAA+CGG + chr1_4:70465578-70465597 None:intergenic 35.0%
CAAATGAATCATCTTCGTTG+GGG + chr1_4:70465622-70465641 None:intergenic 35.0%
GACAAATGAATCATCTTCGT+TGG + chr1_4:70465624-70465643 None:intergenic 35.0%
ACGGGTTCTTAACATTGTTA+AGG + chr1_4:70465868-70465887 None:intergenic 35.0%
TTAACAATGTTAAGAACCCG+TGG - chr1_4:70465867-70465886 Msa0182040:intron 35.0%
AGAGACAAGGATTCTGAATT+TGG - chr1_4:70465920-70465939 Msa0182040:intron 35.0%
ACAAGGATTCTGAATTTGGA+AGG - chr1_4:70465924-70465943 Msa0182040:intron 35.0%
ATTGGTGAAAGTTGAGTCTT+AGG - chr1_4:70466134-70466153 Msa0182040:intron 35.0%
GTTGAGTCTTAGGAATAGAA+AGG - chr1_4:70466144-70466163 Msa0182040:intron 35.0%
AGTCTTAGGAATAGAAAGGA+GGG - chr1_4:70466148-70466167 Msa0182040:intron 35.0%
GGTCATTCATGTTCGAAATG+TGG - chr1_4:70460576-70460595 Msa0182040:CDS 40.0%
GAACTTGACATTGACCAAGA+GGG - chr1_4:70460732-70460751 Msa0182040:CDS 40.0%
ACCAAGAGGGTGAATGAAAA+GGG - chr1_4:70460745-70460764 Msa0182040:CDS 40.0%
! AGACCTGGACTCTTTTTATC+AGG - chr1_4:70460769-70460788 Msa0182040:CDS 40.0%
TCGAATGTAATCACGTGTGT+CGG + chr1_4:70460961-70460980 None:intergenic 40.0%
CAATGTGTCAATGTCGTGTT+CGG - chr1_4:70461012-70461031 Msa0182040:intron 40.0%
! AGCTTTGTGATGACTCCAAA+AGG + chr1_4:70461458-70461477 None:intergenic 40.0%
GATGTTACGTGCCAAAAATC+AGG - chr1_4:70461481-70461500 Msa0182040:intron 40.0%
AATGTGTGAGCCGTATTTAC+AGG - chr1_4:70461610-70461629 Msa0182040:CDS 40.0%
! TGTAAAGCACTAACTGCAGA+AGG + chr1_4:70461659-70461678 None:intergenic 40.0%
!! AGCTAAGAGTACCTTATGCT+TGG + chr1_4:70461701-70461720 None:intergenic 40.0%
GCTCTTGATGAGATGAAAAC+TGG + chr1_4:70461875-70461894 None:intergenic 40.0%
ATAGATCAAAGTCAAGGACG+AGG - chr1_4:70461903-70461922 Msa0182040:CDS 40.0%
! TGTCGATTGCTTACAAAAGC+AGG - chr1_4:70461983-70462002 Msa0182040:intron 40.0%
CTTACAAAAGCAGGCAGAAT+TGG - chr1_4:70461992-70462011 Msa0182040:intron 40.0%
CTTAGGCTGTTACATTTCAG+TGG - chr1_4:70462069-70462088 Msa0182040:intron 40.0%
! TTTTTCTCCTCATGGATCTG+TGG - chr1_4:70462297-70462316 Msa0182040:intron 40.0%
AGTGTCCAAGTACTAATGGT+GGG + chr1_4:70462509-70462528 None:intergenic 40.0%
TACGAACTTTGTAGGCTTTC+AGG - chr1_4:70463123-70463142 Msa0182040:intron 40.0%
AAGGAAAAGGTAGAAGGTTG+AGG + chr1_4:70463440-70463459 None:intergenic 40.0%
AGAGACTGAATCACCTTGAA+CGG + chr1_4:70463545-70463564 None:intergenic 40.0%
TCTGTTCTGTAGGGAGATTT+GGG + chr1_4:70463652-70463671 None:intergenic 40.0%
TTCTGTTCTGTAGGGAGATT+TGG + chr1_4:70463653-70463672 None:intergenic 40.0%
AATCTCCCTACAGAACAGAA+AGG - chr1_4:70463653-70463672 Msa0182040:intron 40.0%
CAAACGAAACATACTTGTGG+AGG + chr1_4:70463683-70463702 None:intergenic 40.0%
CTCCACAAGTATGTTTCGTT+TGG - chr1_4:70463681-70463700 Msa0182040:intron 40.0%
AGCCAAACGAAACATACTTG+TGG + chr1_4:70463686-70463705 None:intergenic 40.0%
ACTTCGCAAAGATCAATGAG+AGG + chr1_4:70463765-70463784 None:intergenic 40.0%
TCATCTTCTGTGAAACAGCT+TGG - chr1_4:70463819-70463838 Msa0182040:intron 40.0%
TCTGTGAAACAGCTTGGATA+TGG - chr1_4:70463825-70463844 Msa0182040:intron 40.0%
TTAAATTTAGCACCTGCCCT+GGG + chr1_4:70463888-70463907 None:intergenic 40.0%
AATCTGGGTTTGATAGGGAA+AGG - chr1_4:70464249-70464268 Msa0182040:intron 40.0%
ATCTGGGTTTGATAGGGAAA+GGG - chr1_4:70464250-70464269 Msa0182040:intron 40.0%
GTTTACCTCCTGGAATAACT+GGG - chr1_4:70464492-70464511 Msa0182040:CDS 40.0%
TCATTTGTCCCAGTTATTCC+AGG + chr1_4:70464503-70464522 None:intergenic 40.0%
ATCTGGATAAGTGCATGATC+TGG + chr1_4:70464717-70464736 None:intergenic 40.0%
AGATCATGCACTTATCCAGA+TGG - chr1_4:70464716-70464735 Msa0182040:CDS 40.0%
GATCATGCACTTATCCAGAT+GGG - chr1_4:70464717-70464736 Msa0182040:CDS 40.0%
GTTGTTTGATAAGCGACTAG+AGG - chr1_4:70465482-70465501 Msa0182040:intron 40.0%
TCAGCACCTTGTGTTATGTT+TGG + chr1_4:70465525-70465544 None:intergenic 40.0%
CATCTTCAGTGATGTCTTGT+GGG + chr1_4:70465653-70465672 None:intergenic 40.0%
TCATCTTCAGTGATGTCTTG+TGG + chr1_4:70465654-70465673 None:intergenic 40.0%
GAGATGAATGGGAAGAAACA+AGG - chr1_4:70465726-70465745 Msa0182040:intron 40.0%
GAGCATAACAACCGTTACTT+CGG + chr1_4:70465897-70465916 None:intergenic 40.0%
TGTTATGCTCAGTAGAGACA+AGG - chr1_4:70465907-70465926 Msa0182040:intron 40.0%
!! AGGGGTGTAGATTTTGTGAT+TGG - chr1_4:70466116-70466135 Msa0182040:intron 40.0%
GAGTCTTAGGAATAGAAAGG+AGG - chr1_4:70466147-70466166 Msa0182040:intron 40.0%
GTCTTAGGAATAGAAAGGAG+GGG - chr1_4:70466149-70466168 Msa0182040:intron 40.0%
TATCATGGCTGAACCTTCCA+AGG - chr1_4:70460555-70460574 Msa0182040:CDS 45.0%
CGAACATGAATGACCTTGGA+AGG + chr1_4:70460571-70460590 None:intergenic 45.0%
!! TGAGAATCAGGGAAGTACCT+CGG + chr1_4:70460614-70460633 None:intergenic 45.0%
GGAACTTGACATTGACCAAG+AGG - chr1_4:70460731-70460750 Msa0182040:CDS 45.0%
GACCAAGAGGGTGAATGAAA+AGG - chr1_4:70460744-70460763 Msa0182040:CDS 45.0%
! ACCCTTTTCATTCACCCTCT+TGG + chr1_4:70460749-70460768 None:intergenic 45.0%
GTGAATGAAAAGGGTAGACC+TGG - chr1_4:70460754-70460773 Msa0182040:CDS 45.0%
CTTCTAATCAAAGCCGTGTC+TGG - chr1_4:70460926-70460945 Msa0182040:intron 45.0%
CGACATTGACACATTGACAC+CGG + chr1_4:70461008-70461027 None:intergenic 45.0%
TCTTCATGTCAGTGCTTCGT+TGG - chr1_4:70461079-70461098 Msa0182040:intron 45.0%
AGTGAAAGGACAGCACATCT+AGG + chr1_4:70461123-70461142 None:intergenic 45.0%
TGTGCTGTCCTTTCACTGAA+TGG - chr1_4:70461126-70461145 Msa0182040:intron 45.0%
TACTCGAGCCATTCAGTGAA+AGG + chr1_4:70461137-70461156 None:intergenic 45.0%
CAGCTTTCTGTCGACATGAT+TGG - chr1_4:70461234-70461253 Msa0182040:intron 45.0%
CAGAAGGAACGTCTTGCATT+TGG + chr1_4:70461643-70461662 None:intergenic 45.0%
! AGAGTACCTTATGCTTGGCT+GGG + chr1_4:70461696-70461715 None:intergenic 45.0%
!! AAGAGTACCTTATGCTTGGC+TGG + chr1_4:70461697-70461716 None:intergenic 45.0%
ATCTTCTCCACAGATCCATG+AGG + chr1_4:70462307-70462326 None:intergenic 45.0%
GTGACATTTCAGAAGTCAGC+TGG - chr1_4:70462328-70462347 Msa0182040:intron 45.0%
!! CAAGTACTAATGGTGGGTGT+GGG + chr1_4:70462503-70462522 None:intergenic 45.0%
CAGTGTCCAAGTACTAATGG+TGG + chr1_4:70462510-70462529 None:intergenic 45.0%
! GTGGTGTCAATTGGTTCATG+TGG - chr1_4:70462754-70462773 Msa0182040:intron 45.0%
TACTGCAAGAACTGCACTTC+AGG - chr1_4:70463180-70463199 Msa0182040:CDS 45.0%
TTATGATGGTTGCTGTCAGC+TGG - chr1_4:70463307-70463326 Msa0182040:intron 45.0%
TGAAGTCTCTGTGAAAGACG+AGG + chr1_4:70463625-70463644 None:intergenic 45.0%
! AGGAAGCATGTATGGTGTTC+AGG - chr1_4:70463854-70463873 Msa0182040:intron 45.0%
! GGAAGCATGTATGGTGTTCA+GGG - chr1_4:70463855-70463874 Msa0182040:intron 45.0%
ATGTATGGTGTTCAGGGTTC+TGG - chr1_4:70463861-70463880 Msa0182040:intron 45.0%
GTTAAATTTAGCACCTGCCC+TGG + chr1_4:70463889-70463908 None:intergenic 45.0%
CTGAAAGGAGGGGGAAAAAA+CGG + chr1_4:70463972-70463991 None:intergenic 45.0%
! TTTTTCCCCCTCCTTTCAGT+CGG - chr1_4:70463973-70463992 Msa0182040:intron 45.0%
TGGATATCCGACTGAAAGGA+GGG + chr1_4:70463983-70464002 None:intergenic 45.0%
TCTGGGTTTGATAGGGAAAG+GGG - chr1_4:70464251-70464270 Msa0182040:intron 45.0%
GGTTTACCTCCTGGAATAAC+TGG - chr1_4:70464491-70464510 Msa0182040:CDS 45.0%
TTTGTCCCAGTTATTCCAGG+AGG + chr1_4:70464500-70464519 None:intergenic 45.0%
AGATGGTTTCCAAGCTGAAC+TGG - chr1_4:70464740-70464759 Msa0182040:intron 45.0%
ACTGGCTGTACACTTTCTGA+AGG - chr1_4:70464758-70464777 Msa0182040:intron 45.0%
TGAGATTGTGACCCTTCTAG+AGG - chr1_4:70465671-70465690 Msa0182040:intron 45.0%
! TCAGTTTGAGACTGAGGATC+AGG - chr1_4:70465755-70465774 Msa0182040:intron 45.0%
GGTAGCATGCTTGCATACAA+GGG + chr1_4:70465790-70465809 None:intergenic 45.0%
AGGTAGCATGCTTGCATACA+AGG + chr1_4:70465791-70465810 None:intergenic 45.0%
!! AATAAATAAATAAAATGAAA+TGG + chr1_4:70461565-70461584 None:intergenic 5.0%
!!! ATAAATTATTTTCTTAATTT+TGG - chr1_4:70464904-70464923 Msa0182040:CDS 5.0%
!!! AATTTCTTAATTTATTTTAT+TGG - chr1_4:70465104-70465123 Msa0182040:intron 5.0%
!! AATGATTTAAAAATAAATAA+AGG + chr1_4:70466198-70466217 None:intergenic 5.0%
ATCAAAGCCGTGTCTGGTGT+CGG - chr1_4:70460932-70460951 Msa0182040:intron 50.0%
TGTCCATGCCAGTGCTTTGT+AGG - chr1_4:70461035-70461054 Msa0182040:intron 50.0%
GTCCATGCCAGTGCTTTGTA+GGG - chr1_4:70461036-70461055 Msa0182040:intron 50.0%
TCCATGCCAGTGCTTTGTAG+GGG - chr1_4:70461037-70461056 Msa0182040:intron 50.0%
GAAACACCCAGCCAAGCATA+AGG - chr1_4:70461687-70461706 Msa0182040:CDS 50.0%
AAGTCAAGGACGAGGAGATG+AGG - chr1_4:70461911-70461930 Msa0182040:intron 50.0%
CTCAATGCTGTCCTGCTGTT+TGG - chr1_4:70462185-70462204 Msa0182040:intron 50.0%
CGTGCTCTATCCCATAACAG+TGG - chr1_4:70462258-70462277 Msa0182040:intron 50.0%
!! CCAAGTACTAATGGTGGGTG+TGG + chr1_4:70462504-70462523 None:intergenic 50.0%
CCACACCCACCATTAGTACT+TGG - chr1_4:70462501-70462520 Msa0182040:CDS 50.0%
!! CTGTGTATTGGCTTGGCTTG+TGG - chr1_4:70463372-70463391 Msa0182040:intron 50.0%
TCCCTACAGAACAGAAAGGC+AGG - chr1_4:70463657-70463676 Msa0182040:intron 50.0%
GCCTGCCTTTCTGTTCTGTA+GGG + chr1_4:70463661-70463680 None:intergenic 50.0%
! CAGCTTGGATATGGTGATGC+AGG - chr1_4:70463834-70463853 Msa0182040:intron 50.0%
! GGTGATGCAGGAAGCATGTA+TGG - chr1_4:70463846-70463865 Msa0182040:intron 50.0%
GATATCCGACTGAAAGGAGG+GGG + chr1_4:70463981-70464000 None:intergenic 50.0%
GGATATCCGACTGAAAGGAG+GGG + chr1_4:70463982-70464001 None:intergenic 50.0%
GTGGATATCCGACTGAAAGG+AGG + chr1_4:70463984-70464003 None:intergenic 50.0%
CCTGTGGATATCCGACTGAA+AGG + chr1_4:70463987-70464006 None:intergenic 50.0%
CCTTTCAGTCGGATATCCAC+AGG - chr1_4:70463984-70464003 Msa0182040:intron 50.0%
ACTGTAGATGCCCAATGCTG+CGG - chr1_4:70464445-70464464 Msa0182040:CDS 50.0%
GCACTTATCCAGATGGGAGA+TGG - chr1_4:70464723-70464742 Msa0182040:CDS 50.0%
CTTGGAAACCATCTCCCATC+TGG + chr1_4:70464734-70464753 None:intergenic 50.0%
AGTGTACAGCCAGTTCAGCT+TGG + chr1_4:70464752-70464771 None:intergenic 50.0%
AGTGATGTCTTGTGGGAGTG+TGG + chr1_4:70465646-70465665 None:intergenic 50.0%
! GGTTCCATGCTCCTCTAGAA+GGG + chr1_4:70465685-70465704 None:intergenic 50.0%
TGGTTCCATGCTCCTCTAGA+AGG + chr1_4:70465686-70465705 None:intergenic 50.0%
GAATGGGAAGAAACAAGGCC+TGG - chr1_4:70465731-70465750 Msa0182040:intron 50.0%
CCTCAGTCTCAAACTGAACC+AGG + chr1_4:70465752-70465771 None:intergenic 50.0%
! CCTGGTTCAGTTTGAGACTG+AGG - chr1_4:70465749-70465768 Msa0182040:intron 50.0%
AAGCATGCTACCTCGCTTTC+TGG - chr1_4:70465798-70465817 Msa0182040:exon 50.0%
AATTACCGAGCCAGAAAGCG+AGG + chr1_4:70465811-70465830 None:intergenic 50.0%
!! CGCTTTCTGGCTCGGTAATT+CGG - chr1_4:70465811-70465830 Msa0182040:intron 50.0%
ACCGTTACTTCGGTTGTCCA+CGG + chr1_4:70465887-70465906 None:intergenic 50.0%
TGTGGGGCACGAAATATCCG+AGG - chr1_4:70460594-70460613 Msa0182040:CDS 55.0%
!! ACCCCTACAAAGCACTGGCA+TGG + chr1_4:70461041-70461060 None:intergenic 55.0%
CACACACCCCTACAAAGCAC+TGG + chr1_4:70461046-70461065 None:intergenic 55.0%
CAAGGACGAGGAGATGAGGT+TGG - chr1_4:70461915-70461934 Msa0182040:intron 55.0%
! TCCTGCTGTTTGGAACCCTC+TGG - chr1_4:70462195-70462214 Msa0182040:intron 55.0%
TCCAGAGGGTTCCAAACAGC+AGG + chr1_4:70462199-70462218 None:intergenic 55.0%
GGTTTGGCTGTGCATCCAGA+GGG + chr1_4:70462213-70462232 None:intergenic 55.0%
GGCCTGCCTTTCTGTTCTGT+AGG + chr1_4:70463662-70463681 None:intergenic 55.0%
!! TGTTCAGGGTTCTGGACCCA+GGG - chr1_4:70463869-70463888 Msa0182040:intron 55.0%
!!! CGGCCATTGCAGCTGCTTTT+GGG - chr1_4:70464465-70464484 Msa0182040:CDS 55.0%
!!! GGCCATTGCAGCTGCTTTTG+GGG - chr1_4:70464466-70464485 Msa0182040:CDS 55.0%
!!! GCCATTGCAGCTGCTTTTGG+GGG - chr1_4:70464467-70464486 Msa0182040:CDS 55.0%
TCCCCCAAAAGCAGCTGCAA+TGG + chr1_4:70464471-70464490 None:intergenic 55.0%
!!! ATTGCAGCTGCTTTTGGGGG+AGG - chr1_4:70464470-70464489 Msa0182040:CDS 55.0%
TTTGGGGGAGGTTTACCTCC+TGG - chr1_4:70464482-70464501 Msa0182040:CDS 55.0%
TCGTTGGGGAGCAGCAATAG+CGG + chr1_4:70465608-70465627 None:intergenic 55.0%
! GTGACCCTTCTAGAGGAGCA+TGG - chr1_4:70465678-70465697 Msa0182040:intron 55.0%
!! TGCTACCTCGCTTTCTGGCT+CGG - chr1_4:70465803-70465822 Msa0182040:exon 55.0%
CCGTTACTTCGGTTGTCCAC+GGG + chr1_4:70465886-70465905 None:intergenic 55.0%
CCCGTGGACAACCGAAGTAA+CGG - chr1_4:70465883-70465902 Msa0182040:intron 55.0%
! TCGGTGTCCGACACCAGACA+CGG + chr1_4:70460942-70460961 None:intergenic 60.0%
! CGGTTTGGCTGTGCATCCAG+AGG + chr1_4:70462214-70462233 None:intergenic 60.0%
GAGTGCACGAGCATGGGTGT+GGG + chr1_4:70462481-70462500 None:intergenic 60.0%
! GTGTGGGAGTGCACGAGCAT+GGG + chr1_4:70462487-70462506 None:intergenic 60.0%
!! GTGTTCAGGGTTCTGGACCC+AGG - chr1_4:70463868-70463887 Msa0182040:intron 60.0%
GCTGCAATGGCCGCAGCATT+GGG + chr1_4:70464458-70464477 None:intergenic 60.0%
AGCTGCAATGGCCGCAGCAT+TGG + chr1_4:70464459-70464478 None:intergenic 60.0%
!! GCGGCCATTGCAGCTGCTTT+TGG - chr1_4:70464464-70464483 Msa0182040:CDS 60.0%
GGAGTGCACGAGCATGGGTG+TGG + chr1_4:70462482-70462501 None:intergenic 65.0%
! GGTGTGGGAGTGCACGAGCA+TGG + chr1_4:70462488-70462507 None:intergenic 65.0%
!! CAGGGTTCTGGACCCAGGGC+AGG - chr1_4:70463873-70463892 Msa0182040:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70460080 70466295 70460080 ID=Msa0182040;Name=Msa0182040
chr1_4 mRNA 70460080 70466295 70460080 ID=Msa0182040-mRNA-1;Parent=Msa0182040;Name=Msa0182040-mRNA-1;_AED=0.17;_eAED=0.17;_QI=157|1|1|1|0.92|0.86|15|432|443
chr1_4 exon 70460080 70460901 70460080 ID=Msa0182040-mRNA-1:exon:23525;Parent=Msa0182040-mRNA-1
chr1_4 exon 70461596 70461739 70461596 ID=Msa0182040-mRNA-1:exon:23524;Parent=Msa0182040-mRNA-1
chr1_4 exon 70461816 70461923 70461816 ID=Msa0182040-mRNA-1:exon:23523;Parent=Msa0182040-mRNA-1
chr1_4 exon 70462370 70462383 70462370 ID=Msa0182040-mRNA-1:exon:23522;Parent=Msa0182040-mRNA-1
chr1_4 exon 70462481 70462538 70462481 ID=Msa0182040-mRNA-1:exon:23521;Parent=Msa0182040-mRNA-1
chr1_4 exon 70462687 70462738 70462687 ID=Msa0182040-mRNA-1:exon:23520;Parent=Msa0182040-mRNA-1
chr1_4 exon 70462825 70462866 70462825 ID=Msa0182040-mRNA-1:exon:23519;Parent=Msa0182040-mRNA-1
chr1_4 exon 70463030 70463079 70463030 ID=Msa0182040-mRNA-1:exon:23518;Parent=Msa0182040-mRNA-1
chr1_4 exon 70463174 70463238 70463174 ID=Msa0182040-mRNA-1:exon:23517;Parent=Msa0182040-mRNA-1
chr1_4 exon 70464026 70464149 70464026 ID=Msa0182040-mRNA-1:exon:23516;Parent=Msa0182040-mRNA-1
chr1_4 exon 70464443 70464521 70464443 ID=Msa0182040-mRNA-1:exon:23515;Parent=Msa0182040-mRNA-1
chr1_4 exon 70464667 70464743 70464667 ID=Msa0182040-mRNA-1:exon:23514;Parent=Msa0182040-mRNA-1
chr1_4 exon 70464873 70464944 70464873 ID=Msa0182040-mRNA-1:exon:23513;Parent=Msa0182040-mRNA-1
chr1_4 exon 70465760 70465827 70465760 ID=Msa0182040-mRNA-1:exon:23512;Parent=Msa0182040-mRNA-1
chr1_4 exon 70466150 70466295 70466150 ID=Msa0182040-mRNA-1:exon:23511;Parent=Msa0182040-mRNA-1
chr1_4 five_prime_UTR 70466150 70466295 70466150 ID=Msa0182040-mRNA-1:five_prime_utr;Parent=Msa0182040-mRNA-1
chr1_4 five_prime_UTR 70465817 70465827 70465817 ID=Msa0182040-mRNA-1:five_prime_utr;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70465760 70465816 70465760 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70464873 70464944 70464873 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70464667 70464743 70464667 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70464443 70464521 70464443 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70464026 70464149 70464026 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70463174 70463238 70463174 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70463030 70463079 70463030 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70462825 70462866 70462825 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70462687 70462738 70462687 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70462481 70462538 70462481 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70462370 70462383 70462370 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70461816 70461923 70461816 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70461596 70461739 70461596 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 CDS 70460512 70460901 70460512 ID=Msa0182040-mRNA-1:cds;Parent=Msa0182040-mRNA-1
chr1_4 three_prime_UTR 70460080 70460511 70460080 ID=Msa0182040-mRNA-1:three_prime_utr;Parent=Msa0182040-mRNA-1
Gene Sequence

>Msa0182040

ATGGCTGAACCTTCCAAGGTCATTCATGTTCGAAATGTGGGGCACGAAATATCCGAGAATGATTTACTTCAGTTATTTCAACCTTTTGGAGTCATCACAAAGCTTGTGATGTTACGTGCCAAAAATCAGGCACTTATCCAAATGCAAGACGTTCCTTCTGCAGTTAGTGCTTTACAGTTTTATGGAAACACCCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCATCTCATCAAGAGCTAACAACAATAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTCTATCCCATAACAGTGGATGTACTGTATCAAGTTTTTTCTCCTCATGGATCTGTGGAGAAGATTGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACAACAGAGTTCTATTACTGCAAGAACTGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGATATTCAATTCTCAAACCTTGATGAATTACAAGTGAATTATAATAATGACCGTTCAAGAGACTTCACAAACCCAAATCTCCCTACAGAACAGAAAGGCAGGCCTCCACAACTTGGATATGGTGATGCAGGAAGCATGTATGGTGTTCAGGGTTCTGGACCCAGGGCAGTCGGATATCCACAGATGCCCAATGCTGCGGCCATTGCAGCTGCTTTTGGGGGAGGTTTACCTCCTGGAATAACTGGGACAAATGATAGGTGTACACTTCTTGTCTCAAATCTTAATCCTGATAGAATTGATGAAGACAAACTGTTCAACTTGTTCTCCCTTTATGGAAACATTGTGAGAATTAAACTTCTACGCAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCTGTACACTTTCTGAAGGGAGCCATGTTGTTTGATAAGCGACTAGAGGTCAACTTCTCGAAGCATCCAAACATAACACAAGGTGCTGACACACACGACTACAGCAACTCAAATCTCAACCGTTTTAATCGTAACGCTGCTAAAAACTACCGCTATTGCTGCTCCCCAACGAAGATGATTCATTTGTCCACACTCCCACAAGACATCACTGAAGATGAGATTGTGACCCTTCTAGAGGAGCATGGAACCATTGTCAATAGCAAAGTATTTGAGATGAATGGGAAGAAACAAGGCCTGGTTCAGTTTGAGACTGAGGATCAGGCTACTGAAGCCCTTGTATGCAAGCATGCTACCTCGCTTTCTGGCTCGGTAATTCGGATCTCCTATTCTCAATTGCAGAATATATGA

Protein sequence

>Msa0182040

MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALQFYGNTQPSIRGRNVYVQFSSHQELTTIDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGSMYGVQGSGPRAVGYPQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQATEALVCKHATSLSGSVIRISYSQLQNI*