Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182800 | XP_013470200.1 | 93.651 | 126 | 4 | 2 | 56 | 180 | 2 | 124 | 2.40e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182800 | A0A072VS20 | 93.651 | 126 | 4 | 2 | 56 | 180 | 2 | 124 | 1.15e-64 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046470 | Msa0182800 | 0.970341 | 1.803881e-131 | -8.615850e-47 |
| Msa0090230 | Msa0182800 | 0.818760 | 1.656848e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182800 | MtrunA17_Chr1g0210031 | 92.857 | 126 | 4 | 3 | 56 | 180 | 2 | 123 | 8.92e-66 | 197 |
| Msa0182800 | MtrunA17_Chr5g0422991 | 65.041 | 123 | 38 | 3 | 56 | 178 | 2 | 119 | 9.84e-44 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182800 | AT1G68585.1 | 49.451 | 91 | 38 | 3 | 82 | 166 | 24 | 112 | 2.85e-18 | 76.6 |
Find 35 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGACTAGTCTTGCATCTT+TGG | 0.189720 | 1_4:+71621339 | Msa0182800:CDS |
| AAGATTGTTATTATGATAAA+AGG | 0.195948 | 1_4:+71621266 | Msa0182800:CDS |
| CGTTTGATAATGGCAACTTT+AGG | 0.228347 | 1_4:-71622260 | None:intergenic |
| GGGGAAGGAGTCTTGTTTAA+TGG | 0.240314 | 1_4:-71622239 | None:intergenic |
| AGAAGGTGATACTTACATTT+AGG | 0.262994 | 1_4:+71622171 | Msa0182800:CDS |
| GTTTGATAATGGCAACTTTA+GGG | 0.304764 | 1_4:-71622259 | None:intergenic |
| TAATGTCAGCAACTCTCTTC+TGG | 0.333777 | 1_4:-71621524 | None:intergenic |
| GATAGAACAATTTCATCTCT+TGG | 0.366031 | 1_4:-71621169 | None:intergenic |
| ATAGAACAATTTCATCTCTT+GGG | 0.377484 | 1_4:-71621168 | None:intergenic |
| GCGGAATATCCGTTTGATAA+TGG | 0.404318 | 1_4:-71622270 | None:intergenic |
| GGAGTCTTTGTCACTGCCAC+TGG | 0.407535 | 1_4:+71621360 | Msa0182800:CDS |
| ATGCTTATGACTTGAGTTGT+TGG | 0.430989 | 1_4:-71621145 | None:intergenic |
| ACTTGAGTTGTTGGTGGGGT+TGG | 0.461160 | 1_4:-71621136 | None:intergenic |
| AATAAACACTCAGTTTCTGT+TGG | 0.469610 | 1_4:+71621204 | Msa0182800:CDS |
| CCCAGAAAGAGGAAAACTCT+TGG | 0.478273 | 1_4:-71621320 | None:intergenic |
| CTTATGACTTGAGTTGTTGG+TGG | 0.494044 | 1_4:-71621142 | None:intergenic |
| GTCAGCAACTCTCTTCTGGC+AGG | 0.495054 | 1_4:-71621520 | None:intergenic |
| GTCAATTGTGGTGAATGTAT+TGG | 0.498672 | 1_4:+71622145 | Msa0182800:CDS |
| TAAGAAGTTAAATAAAACTA+AGG | 0.508098 | 1_4:+71621237 | Msa0182800:CDS |
| TCACAAATAGTAGAGATGTA+AGG | 0.514214 | 1_4:+71622448 | Msa0182800:three_prime_UTR |
| TTATGACTTGAGTTGTTGGT+GGG | 0.515275 | 1_4:-71621141 | None:intergenic |
| TTGTTATTGCTTTCTCAACA+TGG | 0.518334 | 1_4:+71622421 | Msa0182800:three_prime_UTR |
| AGGAATCTTCAGAAATCAGC+TGG | 0.529337 | 1_4:+71621286 | Msa0182800:CDS |
| CTAAAGTTGCCATTATCAAA+CGG | 0.531333 | 1_4:+71622261 | Msa0182800:CDS |
| TATAATTACTAATTAACCAC+TGG | 0.531693 | 1_4:-71622297 | None:intergenic |
| GCAAGACTAGTCCCAGAAAG+AGG | 0.539833 | 1_4:-71621331 | None:intergenic |
| ATAATGGCAACTTTAGGGGA+AGG | 0.548777 | 1_4:-71622254 | None:intergenic |
| GGTGAATGTATTGGAAAAGA+AGG | 0.579398 | 1_4:+71622154 | Msa0182800:CDS |
| CGGATATTCCGCTCATCCAG+TGG | 0.579718 | 1_4:+71622281 | Msa0182800:CDS |
| ACACTCAGTTTCTGTTGGAG+AGG | 0.587433 | 1_4:+71621209 | Msa0182800:CDS |
| AACAGAATCTTATGCACATG+TGG | 0.606171 | 1_4:-71622337 | None:intergenic |
| TATGACTTGAGTTGTTGGTG+GGG | 0.608328 | 1_4:-71621140 | None:intergenic |
| CTAATTAACCACTGGATGAG+CGG | 0.609688 | 1_4:-71622289 | None:intergenic |
| TTTGATAATGGCAACTTTAG+GGG | 0.615844 | 1_4:-71622258 | None:intergenic |
| AGCAGAGACAGAGTCAATTG+TGG | 0.625282 | 1_4:+71622133 | Msa0182800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGTTAAATAAAACTA+AGG | + | chr1_4:71621237-71621256 | Msa0182800:CDS | 15.0% |
| !!! | AAGATTGTTATTATGATAAA+AGG | + | chr1_4:71621266-71621285 | Msa0182800:CDS | 15.0% |
| !! | TCTATATATATAGTGTTTAA+TGG | + | chr1_4:71621436-71621455 | Msa0182800:intron | 15.0% |
| !! | TAACAGTAAATAACAATAAT+TGG | - | chr1_4:71621893-71621912 | None:intergenic | 15.0% |
| !! | TAAGAAGTTAAATAAAACTA+AGG | + | chr1_4:71621237-71621256 | Msa0182800:CDS | 15.0% |
| !!! | AAGATTGTTATTATGATAAA+AGG | + | chr1_4:71621266-71621285 | Msa0182800:CDS | 15.0% |
| !! | TCTATATATATAGTGTTTAA+TGG | + | chr1_4:71621436-71621455 | Msa0182800:intron | 15.0% |
| !! | TAACAGTAAATAACAATAAT+TGG | - | chr1_4:71621893-71621912 | None:intergenic | 15.0% |
| !! | AAAACTCAAAATACAGTAAA+AGG | - | chr1_4:71621400-71621419 | None:intergenic | 20.0% |
| !! | GACATTATTACAAAAATGAA+TGG | + | chr1_4:71621540-71621559 | Msa0182800:CDS | 20.0% |
| !!! | ATTTTTGTTCTGTTGAAATA+AGG | + | chr1_4:71621581-71621600 | Msa0182800:intron | 20.0% |
| !! | AGTAAATAACAATAATTGGA+AGG | - | chr1_4:71621889-71621908 | None:intergenic | 20.0% |
| !! | TATAATTACTAATTAACCAC+TGG | - | chr1_4:71622300-71622319 | None:intergenic | 20.0% |
| !! | AAAACTCAAAATACAGTAAA+AGG | - | chr1_4:71621400-71621419 | None:intergenic | 20.0% |
| !! | GACATTATTACAAAAATGAA+TGG | + | chr1_4:71621540-71621559 | Msa0182800:CDS | 20.0% |
| !!! | ATTTTTGTTCTGTTGAAATA+AGG | + | chr1_4:71621581-71621600 | Msa0182800:intron | 20.0% |
| !! | AGTAAATAACAATAATTGGA+AGG | - | chr1_4:71621889-71621908 | None:intergenic | 20.0% |
| !! | TATAATTACTAATTAACCAC+TGG | - | chr1_4:71622300-71622319 | None:intergenic | 20.0% |
| !!! | AAAAGCCATTTTCACTTTTT+TGG | + | chr1_4:71621096-71621115 | Msa0182800:CDS | 25.0% |
| ! | AATAGCCAAAAAAGTGAAAA+TGG | - | chr1_4:71621104-71621123 | None:intergenic | 25.0% |
| ! | ATAGAACAATTTCATCTCTT+GGG | - | chr1_4:71621171-71621190 | None:intergenic | 25.0% |
| ! | AAATAAGGAGATATCATGTA+TGG | + | chr1_4:71621596-71621615 | Msa0182800:intron | 25.0% |
| ! | TGCTGAAAAATTATAGATAC+GGG | - | chr1_4:71622117-71622136 | None:intergenic | 25.0% |
| ! | CTGCTGAAAAATTATAGATA+CGG | - | chr1_4:71622118-71622137 | None:intergenic | 25.0% |
| !!! | AAAAGCCATTTTCACTTTTT+TGG | + | chr1_4:71621096-71621115 | Msa0182800:CDS | 25.0% |
| ! | AATAGCCAAAAAAGTGAAAA+TGG | - | chr1_4:71621104-71621123 | None:intergenic | 25.0% |
| ! | ATAGAACAATTTCATCTCTT+GGG | - | chr1_4:71621171-71621190 | None:intergenic | 25.0% |
| ! | AAATAAGGAGATATCATGTA+TGG | + | chr1_4:71621596-71621615 | Msa0182800:intron | 25.0% |
| ! | TGCTGAAAAATTATAGATAC+GGG | - | chr1_4:71622117-71622136 | None:intergenic | 25.0% |
| ! | CTGCTGAAAAATTATAGATA+CGG | - | chr1_4:71622118-71622137 | None:intergenic | 25.0% |
| GATAGAACAATTTCATCTCT+TGG | - | chr1_4:71621172-71621191 | None:intergenic | 30.0% | |
| AATAAACACTCAGTTTCTGT+TGG | + | chr1_4:71621204-71621223 | Msa0182800:CDS | 30.0% | |
| AGGGCTTATAAATTATACAG+TGG | - | chr1_4:71621783-71621802 | None:intergenic | 30.0% | |
| ! | TCTTTCACTGATTATATGCA+TGG | + | chr1_4:71621946-71621965 | Msa0182800:intron | 30.0% |
| CTGAAAAATTATAGATACGG+GGG | - | chr1_4:71622115-71622134 | None:intergenic | 30.0% | |
| GCTGAAAAATTATAGATACG+GGG | - | chr1_4:71622116-71622135 | None:intergenic | 30.0% | |
| AGAAGGTGATACTTACATTT+AGG | + | chr1_4:71622171-71622190 | Msa0182800:CDS | 30.0% | |
| AGGATATCAAAAACAACTGT+TGG | + | chr1_4:71622191-71622210 | Msa0182800:CDS | 30.0% | |
| !! | TTTGATAATGGCAACTTTAG+GGG | - | chr1_4:71622261-71622280 | None:intergenic | 30.0% |
| !! | GTTTGATAATGGCAACTTTA+GGG | - | chr1_4:71622262-71622281 | None:intergenic | 30.0% |
| CTAAAGTTGCCATTATCAAA+CGG | + | chr1_4:71622261-71622280 | Msa0182800:CDS | 30.0% | |
| ! | TTGTTATTGCTTTCTCAACA+TGG | + | chr1_4:71622421-71622440 | Msa0182800:three_prime_UTR | 30.0% |
| TCACAAATAGTAGAGATGTA+AGG | + | chr1_4:71622448-71622467 | Msa0182800:three_prime_UTR | 30.0% | |
| GATAGAACAATTTCATCTCT+TGG | - | chr1_4:71621172-71621191 | None:intergenic | 30.0% | |
| AATAAACACTCAGTTTCTGT+TGG | + | chr1_4:71621204-71621223 | Msa0182800:CDS | 30.0% | |
| AGGGCTTATAAATTATACAG+TGG | - | chr1_4:71621783-71621802 | None:intergenic | 30.0% | |
| ! | TCTTTCACTGATTATATGCA+TGG | + | chr1_4:71621946-71621965 | Msa0182800:intron | 30.0% |
| CTGAAAAATTATAGATACGG+GGG | - | chr1_4:71622115-71622134 | None:intergenic | 30.0% | |
| GCTGAAAAATTATAGATACG+GGG | - | chr1_4:71622116-71622135 | None:intergenic | 30.0% | |
| AGAAGGTGATACTTACATTT+AGG | + | chr1_4:71622171-71622190 | Msa0182800:CDS | 30.0% | |
| AGGATATCAAAAACAACTGT+TGG | + | chr1_4:71622191-71622210 | Msa0182800:CDS | 30.0% | |
| !! | TTTGATAATGGCAACTTTAG+GGG | - | chr1_4:71622261-71622280 | None:intergenic | 30.0% |
| !! | GTTTGATAATGGCAACTTTA+GGG | - | chr1_4:71622262-71622281 | None:intergenic | 30.0% |
| CTAAAGTTGCCATTATCAAA+CGG | + | chr1_4:71622261-71622280 | Msa0182800:CDS | 30.0% | |
| ! | TTGTTATTGCTTTCTCAACA+TGG | + | chr1_4:71622421-71622440 | Msa0182800:three_prime_UTR | 30.0% |
| TCACAAATAGTAGAGATGTA+AGG | + | chr1_4:71622448-71622467 | Msa0182800:three_prime_UTR | 30.0% | |
| ! | TTATGACTTGAGTTGTTGGT+GGG | - | chr1_4:71621144-71621163 | None:intergenic | 35.0% |
| ! | ATGCTTATGACTTGAGTTGT+TGG | - | chr1_4:71621148-71621167 | None:intergenic | 35.0% |
| !! | GTGATTGTTTTGTTGAGAAC+AGG | + | chr1_4:71621458-71621477 | Msa0182800:intron | 35.0% |
| TCTTCTTGCAAAGCAAATAG+AGG | - | chr1_4:71621709-71621728 | None:intergenic | 35.0% | |
| TCTATTTGCTTTGCAAGAAG+AGG | + | chr1_4:71621708-71621727 | Msa0182800:intron | 35.0% | |
| CAAGCTAGAGGAATGTTATA+GGG | + | chr1_4:71621820-71621839 | Msa0182800:intron | 35.0% | |
| AGTCATAGATATCAGCACTA+TGG | - | chr1_4:71621846-71621865 | None:intergenic | 35.0% | |
| GTCAATTGTGGTGAATGTAT+TGG | + | chr1_4:71622145-71622164 | Msa0182800:CDS | 35.0% | |
| GGTGAATGTATTGGAAAAGA+AGG | + | chr1_4:71622154-71622173 | Msa0182800:CDS | 35.0% | |
| !! | CGTTTGATAATGGCAACTTT+AGG | - | chr1_4:71622263-71622282 | None:intergenic | 35.0% |
| AACAGAATCTTATGCACATG+TGG | - | chr1_4:71622340-71622359 | None:intergenic | 35.0% | |
| ! | TTATGACTTGAGTTGTTGGT+GGG | - | chr1_4:71621144-71621163 | None:intergenic | 35.0% |
| ! | ATGCTTATGACTTGAGTTGT+TGG | - | chr1_4:71621148-71621167 | None:intergenic | 35.0% |
| !! | GTGATTGTTTTGTTGAGAAC+AGG | + | chr1_4:71621458-71621477 | Msa0182800:intron | 35.0% |
| TCTTCTTGCAAAGCAAATAG+AGG | - | chr1_4:71621709-71621728 | None:intergenic | 35.0% | |
| TCTATTTGCTTTGCAAGAAG+AGG | + | chr1_4:71621708-71621727 | Msa0182800:intron | 35.0% | |
| CAAGCTAGAGGAATGTTATA+GGG | + | chr1_4:71621820-71621839 | Msa0182800:intron | 35.0% | |
| AGTCATAGATATCAGCACTA+TGG | - | chr1_4:71621846-71621865 | None:intergenic | 35.0% | |
| GTCAATTGTGGTGAATGTAT+TGG | + | chr1_4:71622145-71622164 | Msa0182800:CDS | 35.0% | |
| GGTGAATGTATTGGAAAAGA+AGG | + | chr1_4:71622154-71622173 | Msa0182800:CDS | 35.0% | |
| !! | CGTTTGATAATGGCAACTTT+AGG | - | chr1_4:71622263-71622282 | None:intergenic | 35.0% |
| AACAGAATCTTATGCACATG+TGG | - | chr1_4:71622340-71622359 | None:intergenic | 35.0% | |
| ! | TATGACTTGAGTTGTTGGTG+GGG | - | chr1_4:71621143-71621162 | None:intergenic | 40.0% |
| ! | CTTATGACTTGAGTTGTTGG+TGG | - | chr1_4:71621145-71621164 | None:intergenic | 40.0% |
| AGGAATCTTCAGAAATCAGC+TGG | + | chr1_4:71621286-71621305 | Msa0182800:CDS | 40.0% | |
| ! | TCCAAGAGTTTTCCTCTTTC+TGG | + | chr1_4:71621319-71621338 | Msa0182800:CDS | 40.0% |
| ! | CCAAGAGTTTTCCTCTTTCT+GGG | + | chr1_4:71621320-71621339 | Msa0182800:CDS | 40.0% |
| GGTTCAAAACTACATACCAG+TGG | - | chr1_4:71621379-71621398 | None:intergenic | 40.0% | |
| TAATGTCAGCAACTCTCTTC+TGG | - | chr1_4:71621527-71621546 | None:intergenic | 40.0% | |
| AAGGAGATATCATGTATGGC+TGG | + | chr1_4:71621600-71621619 | Msa0182800:intron | 40.0% | |
| AGAGGTTAAAGAAGACACAG+AGG | + | chr1_4:71621726-71621745 | Msa0182800:intron | 40.0% | |
| CAGTGGCAACATAAACAGTA+AGG | - | chr1_4:71621766-71621785 | None:intergenic | 40.0% | |
| TGCAGACAAAAACACATGCA+GGG | - | chr1_4:71621802-71621821 | None:intergenic | 40.0% | |
| TTGCAGACAAAAACACATGC+AGG | - | chr1_4:71621803-71621822 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTCTGCAAGCTAG+AGG | + | chr1_4:71621808-71621827 | Msa0182800:intron | 40.0% |
| GCAAGCTAGAGGAATGTTAT+AGG | + | chr1_4:71621819-71621838 | Msa0182800:intron | 40.0% | |
| ! | ATAATGGCAACTTTAGGGGA+AGG | - | chr1_4:71622257-71622276 | None:intergenic | 40.0% |
| GCGGAATATCCGTTTGATAA+TGG | - | chr1_4:71622273-71622292 | None:intergenic | 40.0% | |
| CTAATTAACCACTGGATGAG+CGG | - | chr1_4:71622292-71622311 | None:intergenic | 40.0% | |
| ! | TATGACTTGAGTTGTTGGTG+GGG | - | chr1_4:71621143-71621162 | None:intergenic | 40.0% |
| ! | CTTATGACTTGAGTTGTTGG+TGG | - | chr1_4:71621145-71621164 | None:intergenic | 40.0% |
| AGGAATCTTCAGAAATCAGC+TGG | + | chr1_4:71621286-71621305 | Msa0182800:CDS | 40.0% | |
| ! | TCCAAGAGTTTTCCTCTTTC+TGG | + | chr1_4:71621319-71621338 | Msa0182800:CDS | 40.0% |
| ! | CCAAGAGTTTTCCTCTTTCT+GGG | + | chr1_4:71621320-71621339 | Msa0182800:CDS | 40.0% |
| GGTTCAAAACTACATACCAG+TGG | - | chr1_4:71621379-71621398 | None:intergenic | 40.0% | |
| TAATGTCAGCAACTCTCTTC+TGG | - | chr1_4:71621527-71621546 | None:intergenic | 40.0% | |
| AAGGAGATATCATGTATGGC+TGG | + | chr1_4:71621600-71621619 | Msa0182800:intron | 40.0% | |
| AGAGGTTAAAGAAGACACAG+AGG | + | chr1_4:71621726-71621745 | Msa0182800:intron | 40.0% | |
| CAGTGGCAACATAAACAGTA+AGG | - | chr1_4:71621766-71621785 | None:intergenic | 40.0% | |
| TGCAGACAAAAACACATGCA+GGG | - | chr1_4:71621802-71621821 | None:intergenic | 40.0% | |
| TTGCAGACAAAAACACATGC+AGG | - | chr1_4:71621803-71621822 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTCTGCAAGCTAG+AGG | + | chr1_4:71621808-71621827 | Msa0182800:intron | 40.0% |
| GCAAGCTAGAGGAATGTTAT+AGG | + | chr1_4:71621819-71621838 | Msa0182800:intron | 40.0% | |
| ! | ATAATGGCAACTTTAGGGGA+AGG | - | chr1_4:71622257-71622276 | None:intergenic | 40.0% |
| GCGGAATATCCGTTTGATAA+TGG | - | chr1_4:71622273-71622292 | None:intergenic | 40.0% | |
| CTAATTAACCACTGGATGAG+CGG | - | chr1_4:71622292-71622311 | None:intergenic | 40.0% | |
| ACACTCAGTTTCTGTTGGAG+AGG | + | chr1_4:71621209-71621228 | Msa0182800:CDS | 45.0% | |
| CCCAGAAAGAGGAAAACTCT+TGG | - | chr1_4:71621323-71621342 | None:intergenic | 45.0% | |
| !! | TGGGACTAGTCTTGCATCTT+TGG | + | chr1_4:71621339-71621358 | Msa0182800:CDS | 45.0% |
| !! | GTTTTGTTGAGAACAGGTGC+AGG | + | chr1_4:71621464-71621483 | Msa0182800:intron | 45.0% |
| AGCAGAGACAGAGTCAATTG+TGG | + | chr1_4:71622133-71622152 | Msa0182800:intron | 45.0% | |
| !! | GGGGAAGGAGTCTTGTTTAA+TGG | - | chr1_4:71622242-71622261 | None:intergenic | 45.0% |
| ACACTCAGTTTCTGTTGGAG+AGG | + | chr1_4:71621209-71621228 | Msa0182800:CDS | 45.0% | |
| CCCAGAAAGAGGAAAACTCT+TGG | - | chr1_4:71621323-71621342 | None:intergenic | 45.0% | |
| !! | TGGGACTAGTCTTGCATCTT+TGG | + | chr1_4:71621339-71621358 | Msa0182800:CDS | 45.0% |
| !! | GTTTTGTTGAGAACAGGTGC+AGG | + | chr1_4:71621464-71621483 | Msa0182800:intron | 45.0% |
| AGCAGAGACAGAGTCAATTG+TGG | + | chr1_4:71622133-71622152 | Msa0182800:intron | 45.0% | |
| !! | GGGGAAGGAGTCTTGTTTAA+TGG | - | chr1_4:71622242-71622261 | None:intergenic | 45.0% |
| ! | ACTTGAGTTGTTGGTGGGGT+TGG | - | chr1_4:71621139-71621158 | None:intergenic | 50.0% |
| ! | GCAAGACTAGTCCCAGAAAG+AGG | - | chr1_4:71621334-71621353 | None:intergenic | 50.0% |
| GACACAGAGGAAAAGAGCTG+TGG | + | chr1_4:71621739-71621758 | Msa0182800:intron | 50.0% | |
| ! | ACTTGAGTTGTTGGTGGGGT+TGG | - | chr1_4:71621139-71621158 | None:intergenic | 50.0% |
| ! | GCAAGACTAGTCCCAGAAAG+AGG | - | chr1_4:71621334-71621353 | None:intergenic | 50.0% |
| GACACAGAGGAAAAGAGCTG+TGG | + | chr1_4:71621739-71621758 | Msa0182800:intron | 50.0% | |
| GGAGTCTTTGTCACTGCCAC+TGG | + | chr1_4:71621360-71621379 | Msa0182800:CDS | 55.0% | |
| GTCAGCAACTCTCTTCTGGC+AGG | - | chr1_4:71621523-71621542 | None:intergenic | 55.0% | |
| CGGATATTCCGCTCATCCAG+TGG | + | chr1_4:71622281-71622300 | Msa0182800:CDS | 55.0% | |
| GGAGTCTTTGTCACTGCCAC+TGG | + | chr1_4:71621360-71621379 | Msa0182800:CDS | 55.0% | |
| GTCAGCAACTCTCTTCTGGC+AGG | - | chr1_4:71621523-71621542 | None:intergenic | 55.0% | |
| CGGATATTCCGCTCATCCAG+TGG | + | chr1_4:71622281-71622300 | Msa0182800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 71621094 | 71622486 | 71621094 | ID=Msa0182800;Name=Msa0182800 |
| chr1_4 | mRNA | 71621094 | 71622486 | 71621094 | ID=Msa0182800-mRNA-1;Parent=Msa0182800;Name=Msa0182800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|1|1|1|1|3|179|180 |
| chr1_4 | exon | 71621094 | 71621381 | 71621094 | ID=Msa0182800-mRNA-1:exon:23973;Parent=Msa0182800-mRNA-1 |
| chr1_4 | exon | 71621480 | 71621561 | 71621480 | ID=Msa0182800-mRNA-1:exon:23974;Parent=Msa0182800-mRNA-1 |
| chr1_4 | exon | 71622135 | 71622486 | 71622135 | ID=Msa0182800-mRNA-1:exon:23975;Parent=Msa0182800-mRNA-1 |
| chr1_4 | CDS | 71621094 | 71621381 | 71621094 | ID=Msa0182800-mRNA-1:cds;Parent=Msa0182800-mRNA-1 |
| chr1_4 | CDS | 71621480 | 71621561 | 71621480 | ID=Msa0182800-mRNA-1:cds;Parent=Msa0182800-mRNA-1 |
| chr1_4 | CDS | 71622135 | 71622307 | 71622135 | ID=Msa0182800-mRNA-1:cds;Parent=Msa0182800-mRNA-1 |
| chr1_4 | three_prime_UTR | 71622308 | 71622486 | 71622308 | ID=Msa0182800-mRNA-1:three_prime_utr;Parent=Msa0182800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
