Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046470 | Msa0090230 | 0.838251 | 3.212967e-57 | -8.615850e-47 |
| Msa0046470 | Msa0182800 | 0.970341 | 1.803881e-131 | -8.615850e-47 |
| Msa0046470 | Msa0240900 | 0.802408 | 5.689824e-49 | -8.615850e-47 |
| Msa0046470 | Msa0707250 | 0.808964 | 2.391126e-50 | -8.615850e-47 |
| Msa0046470 | Msa1368360 | 0.804676 | 1.926448e-49 | -8.615850e-47 |
| Msa0046470 | Msa1393570 | 0.815109 | 1.094182e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046470 | MtrunA17_Chr1g0210031 | 92.857 | 126 | 4 | 3 | 56 | 180 | 2 | 123 | 8.92e-66 | 197 |
| Msa0046470 | MtrunA17_Chr5g0422991 | 65.041 | 123 | 38 | 3 | 56 | 178 | 2 | 119 | 9.84e-44 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046470 | AT1G68585.1 | 49.451 | 91 | 38 | 3 | 82 | 166 | 24 | 112 | 2.85e-18 | 76.6 |
Find 35 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGACTAGTCTTGCATCTT+TGG | 0.189720 | 1_1:-78625257 | Msa0046470:CDS |
| AAGATTGTTATTATGATAAA+AGG | 0.195948 | 1_1:-78625330 | Msa0046470:CDS |
| CGTTTGATAATGGCAACTTT+AGG | 0.228347 | 1_1:+78624336 | None:intergenic |
| GGGGAAGGAGTCTTGTTTAA+TGG | 0.240314 | 1_1:+78624357 | None:intergenic |
| AGAAGGTGATACTTACATTT+AGG | 0.262994 | 1_1:-78624425 | Msa0046470:CDS |
| GTTTGATAATGGCAACTTTA+GGG | 0.304764 | 1_1:+78624337 | None:intergenic |
| TAATGTCAGCAACTCTCTTC+TGG | 0.333777 | 1_1:+78625072 | None:intergenic |
| GATAGAACAATTTCATCTCT+TGG | 0.366031 | 1_1:+78625427 | None:intergenic |
| ATAGAACAATTTCATCTCTT+GGG | 0.377484 | 1_1:+78625428 | None:intergenic |
| GCGGAATATCCGTTTGATAA+TGG | 0.404318 | 1_1:+78624326 | None:intergenic |
| GGAGTCTTTGTCACTGCCAC+TGG | 0.407535 | 1_1:-78625236 | Msa0046470:intron |
| ATGCTTATGACTTGAGTTGT+TGG | 0.430989 | 1_1:+78625451 | None:intergenic |
| ACTTGAGTTGTTGGTGGGGT+TGG | 0.461160 | 1_1:+78625460 | None:intergenic |
| AATAAACACTCAGTTTCTGT+TGG | 0.469610 | 1_1:-78625392 | Msa0046470:CDS |
| CCCAGAAAGAGGAAAACTCT+TGG | 0.478273 | 1_1:+78625276 | None:intergenic |
| CTTATGACTTGAGTTGTTGG+TGG | 0.494044 | 1_1:+78625454 | None:intergenic |
| GTCAGCAACTCTCTTCTGGC+AGG | 0.495054 | 1_1:+78625076 | None:intergenic |
| GTCAATTGTGGTGAATGTAT+TGG | 0.498672 | 1_1:-78624451 | Msa0046470:CDS |
| TAAGAAGTTAAATAAAACTA+AGG | 0.508098 | 1_1:-78625359 | Msa0046470:CDS |
| TCACAAATAGTAGAGATGTA+AGG | 0.514214 | 1_1:-78624148 | Msa0046470:three_prime_UTR |
| TTATGACTTGAGTTGTTGGT+GGG | 0.515275 | 1_1:+78625455 | None:intergenic |
| TTGTTATTGCTTTCTCAACA+TGG | 0.518334 | 1_1:-78624175 | Msa0046470:three_prime_UTR |
| AGGAATCTTCAGAAATCAGC+TGG | 0.529337 | 1_1:-78625310 | Msa0046470:CDS |
| CTAAAGTTGCCATTATCAAA+CGG | 0.531333 | 1_1:-78624335 | Msa0046470:CDS |
| TATAATTACTAATTAACCAC+TGG | 0.531693 | 1_1:+78624299 | None:intergenic |
| GCAAGACTAGTCCCAGAAAG+AGG | 0.539833 | 1_1:+78625265 | None:intergenic |
| ATAATGGCAACTTTAGGGGA+AGG | 0.548777 | 1_1:+78624342 | None:intergenic |
| GGTGAATGTATTGGAAAAGA+AGG | 0.579398 | 1_1:-78624442 | Msa0046470:CDS |
| CGGATATTCCGCTCATCCAG+TGG | 0.579718 | 1_1:-78624315 | Msa0046470:CDS |
| ACACTCAGTTTCTGTTGGAG+AGG | 0.587433 | 1_1:-78625387 | Msa0046470:CDS |
| AACAGAATCTTATGCACATG+TGG | 0.606171 | 1_1:+78624259 | None:intergenic |
| TATGACTTGAGTTGTTGGTG+GGG | 0.608328 | 1_1:+78625456 | None:intergenic |
| CTAATTAACCACTGGATGAG+CGG | 0.609688 | 1_1:+78624307 | None:intergenic |
| TTTGATAATGGCAACTTTAG+GGG | 0.615844 | 1_1:+78624338 | None:intergenic |
| AGCAGAGACAGAGTCAATTG+TGG | 0.625282 | 1_1:-78624463 | Msa0046470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGTTAAATAAAACTA+AGG | - | chr1_1:78624275-78624294 | Msa0046470:three_prime_UTR | 15.0% |
| !!! | AAGATTGTTATTATGATAAA+AGG | - | chr1_1:78624304-78624323 | Msa0046470:exon | 15.0% |
| !! | TCTATATATATAGTGTTTAA+TGG | - | chr1_1:78624474-78624493 | Msa0046470:intron | 15.0% |
| !! | TAACAGTAAATAACAATAAT+TGG | + | chr1_1:78624931-78624950 | None:intergenic | 15.0% |
| !! | TAAGAAGTTAAATAAAACTA+AGG | - | chr1_1:78624275-78624294 | Msa0046470:three_prime_UTR | 15.0% |
| !!! | AAGATTGTTATTATGATAAA+AGG | - | chr1_1:78624304-78624323 | Msa0046470:exon | 15.0% |
| !! | TCTATATATATAGTGTTTAA+TGG | - | chr1_1:78624474-78624493 | Msa0046470:intron | 15.0% |
| !! | TAACAGTAAATAACAATAAT+TGG | + | chr1_1:78624931-78624950 | None:intergenic | 15.0% |
| !! | AAAACTCAAAATACAGTAAA+AGG | + | chr1_1:78624438-78624457 | None:intergenic | 20.0% |
| !! | GACATTATTACAAAAATGAA+TGG | - | chr1_1:78624578-78624597 | Msa0046470:intron | 20.0% |
| !!! | ATTTTTGTTCTGTTGAAATA+AGG | - | chr1_1:78624619-78624638 | Msa0046470:intron | 20.0% |
| !! | AGTAAATAACAATAATTGGA+AGG | + | chr1_1:78624927-78624946 | None:intergenic | 20.0% |
| !! | TATAATTACTAATTAACCAC+TGG | + | chr1_1:78625338-78625357 | None:intergenic | 20.0% |
| !! | AAAACTCAAAATACAGTAAA+AGG | + | chr1_1:78624438-78624457 | None:intergenic | 20.0% |
| !! | GACATTATTACAAAAATGAA+TGG | - | chr1_1:78624578-78624597 | Msa0046470:intron | 20.0% |
| !!! | ATTTTTGTTCTGTTGAAATA+AGG | - | chr1_1:78624619-78624638 | Msa0046470:intron | 20.0% |
| !! | AGTAAATAACAATAATTGGA+AGG | + | chr1_1:78624927-78624946 | None:intergenic | 20.0% |
| !! | TATAATTACTAATTAACCAC+TGG | + | chr1_1:78625338-78625357 | None:intergenic | 20.0% |
| !!! | AAAAGCCATTTTCACTTTTT+TGG | - | chr1_1:78624134-78624153 | Msa0046470:three_prime_UTR | 25.0% |
| ! | AATAGCCAAAAAAGTGAAAA+TGG | + | chr1_1:78624142-78624161 | None:intergenic | 25.0% |
| ! | ATAGAACAATTTCATCTCTT+GGG | + | chr1_1:78624209-78624228 | None:intergenic | 25.0% |
| ! | AAATAAGGAGATATCATGTA+TGG | - | chr1_1:78624634-78624653 | Msa0046470:intron | 25.0% |
| ! | TGCTGAAAAATTATAGATAC+GGG | + | chr1_1:78625155-78625174 | None:intergenic | 25.0% |
| ! | CTGCTGAAAAATTATAGATA+CGG | + | chr1_1:78625156-78625175 | None:intergenic | 25.0% |
| !!! | AAAAGCCATTTTCACTTTTT+TGG | - | chr1_1:78624134-78624153 | Msa0046470:three_prime_UTR | 25.0% |
| ! | AATAGCCAAAAAAGTGAAAA+TGG | + | chr1_1:78624142-78624161 | None:intergenic | 25.0% |
| ! | ATAGAACAATTTCATCTCTT+GGG | + | chr1_1:78624209-78624228 | None:intergenic | 25.0% |
| ! | AAATAAGGAGATATCATGTA+TGG | - | chr1_1:78624634-78624653 | Msa0046470:intron | 25.0% |
| ! | TGCTGAAAAATTATAGATAC+GGG | + | chr1_1:78625155-78625174 | None:intergenic | 25.0% |
| ! | CTGCTGAAAAATTATAGATA+CGG | + | chr1_1:78625156-78625175 | None:intergenic | 25.0% |
| GATAGAACAATTTCATCTCT+TGG | + | chr1_1:78624210-78624229 | None:intergenic | 30.0% | |
| AATAAACACTCAGTTTCTGT+TGG | - | chr1_1:78624242-78624261 | Msa0046470:three_prime_UTR | 30.0% | |
| AGGGCTTATAAATTATACAG+TGG | + | chr1_1:78624821-78624840 | None:intergenic | 30.0% | |
| ! | TCTTTCACTGATTATATGCA+TGG | - | chr1_1:78624984-78625003 | Msa0046470:intron | 30.0% |
| CTGAAAAATTATAGATACGG+GGG | + | chr1_1:78625153-78625172 | None:intergenic | 30.0% | |
| GCTGAAAAATTATAGATACG+GGG | + | chr1_1:78625154-78625173 | None:intergenic | 30.0% | |
| AGAAGGTGATACTTACATTT+AGG | - | chr1_1:78625209-78625228 | Msa0046470:intron | 30.0% | |
| AGGATATCAAAAACAACTGT+TGG | - | chr1_1:78625229-78625248 | Msa0046470:intron | 30.0% | |
| !! | TTTGATAATGGCAACTTTAG+GGG | + | chr1_1:78625299-78625318 | None:intergenic | 30.0% |
| !! | GTTTGATAATGGCAACTTTA+GGG | + | chr1_1:78625300-78625319 | None:intergenic | 30.0% |
| CTAAAGTTGCCATTATCAAA+CGG | - | chr1_1:78625299-78625318 | Msa0046470:CDS | 30.0% | |
| ! | TTGTTATTGCTTTCTCAACA+TGG | - | chr1_1:78625459-78625478 | Msa0046470:CDS | 30.0% |
| TCACAAATAGTAGAGATGTA+AGG | - | chr1_1:78625486-78625505 | Msa0046470:CDS | 30.0% | |
| GATAGAACAATTTCATCTCT+TGG | + | chr1_1:78624210-78624229 | None:intergenic | 30.0% | |
| AATAAACACTCAGTTTCTGT+TGG | - | chr1_1:78624242-78624261 | Msa0046470:three_prime_UTR | 30.0% | |
| AGGGCTTATAAATTATACAG+TGG | + | chr1_1:78624821-78624840 | None:intergenic | 30.0% | |
| ! | TCTTTCACTGATTATATGCA+TGG | - | chr1_1:78624984-78625003 | Msa0046470:intron | 30.0% |
| CTGAAAAATTATAGATACGG+GGG | + | chr1_1:78625153-78625172 | None:intergenic | 30.0% | |
| GCTGAAAAATTATAGATACG+GGG | + | chr1_1:78625154-78625173 | None:intergenic | 30.0% | |
| AGAAGGTGATACTTACATTT+AGG | - | chr1_1:78625209-78625228 | Msa0046470:intron | 30.0% | |
| AGGATATCAAAAACAACTGT+TGG | - | chr1_1:78625229-78625248 | Msa0046470:intron | 30.0% | |
| !! | TTTGATAATGGCAACTTTAG+GGG | + | chr1_1:78625299-78625318 | None:intergenic | 30.0% |
| !! | GTTTGATAATGGCAACTTTA+GGG | + | chr1_1:78625300-78625319 | None:intergenic | 30.0% |
| CTAAAGTTGCCATTATCAAA+CGG | - | chr1_1:78625299-78625318 | Msa0046470:CDS | 30.0% | |
| ! | TTGTTATTGCTTTCTCAACA+TGG | - | chr1_1:78625459-78625478 | Msa0046470:CDS | 30.0% |
| TCACAAATAGTAGAGATGTA+AGG | - | chr1_1:78625486-78625505 | Msa0046470:CDS | 30.0% | |
| ! | TTATGACTTGAGTTGTTGGT+GGG | + | chr1_1:78624182-78624201 | None:intergenic | 35.0% |
| ! | ATGCTTATGACTTGAGTTGT+TGG | + | chr1_1:78624186-78624205 | None:intergenic | 35.0% |
| !! | GTGATTGTTTTGTTGAGAAC+AGG | - | chr1_1:78624496-78624515 | Msa0046470:intron | 35.0% |
| TCTTCTTGCAAAGCAAATAG+AGG | + | chr1_1:78624747-78624766 | None:intergenic | 35.0% | |
| TCTATTTGCTTTGCAAGAAG+AGG | - | chr1_1:78624746-78624765 | Msa0046470:intron | 35.0% | |
| CAAGCTAGAGGAATGTTATA+GGG | - | chr1_1:78624858-78624877 | Msa0046470:intron | 35.0% | |
| AGTCATAGATATCAGCACTA+TGG | + | chr1_1:78624884-78624903 | None:intergenic | 35.0% | |
| GTCAATTGTGGTGAATGTAT+TGG | - | chr1_1:78625183-78625202 | Msa0046470:intron | 35.0% | |
| GGTGAATGTATTGGAAAAGA+AGG | - | chr1_1:78625192-78625211 | Msa0046470:intron | 35.0% | |
| !! | CGTTTGATAATGGCAACTTT+AGG | + | chr1_1:78625301-78625320 | None:intergenic | 35.0% |
| AACAGAATCTTATGCACATG+TGG | + | chr1_1:78625378-78625397 | None:intergenic | 35.0% | |
| ! | TTATGACTTGAGTTGTTGGT+GGG | + | chr1_1:78624182-78624201 | None:intergenic | 35.0% |
| ! | ATGCTTATGACTTGAGTTGT+TGG | + | chr1_1:78624186-78624205 | None:intergenic | 35.0% |
| !! | GTGATTGTTTTGTTGAGAAC+AGG | - | chr1_1:78624496-78624515 | Msa0046470:intron | 35.0% |
| TCTTCTTGCAAAGCAAATAG+AGG | + | chr1_1:78624747-78624766 | None:intergenic | 35.0% | |
| TCTATTTGCTTTGCAAGAAG+AGG | - | chr1_1:78624746-78624765 | Msa0046470:intron | 35.0% | |
| CAAGCTAGAGGAATGTTATA+GGG | - | chr1_1:78624858-78624877 | Msa0046470:intron | 35.0% | |
| AGTCATAGATATCAGCACTA+TGG | + | chr1_1:78624884-78624903 | None:intergenic | 35.0% | |
| GTCAATTGTGGTGAATGTAT+TGG | - | chr1_1:78625183-78625202 | Msa0046470:intron | 35.0% | |
| GGTGAATGTATTGGAAAAGA+AGG | - | chr1_1:78625192-78625211 | Msa0046470:intron | 35.0% | |
| !! | CGTTTGATAATGGCAACTTT+AGG | + | chr1_1:78625301-78625320 | None:intergenic | 35.0% |
| AACAGAATCTTATGCACATG+TGG | + | chr1_1:78625378-78625397 | None:intergenic | 35.0% | |
| ! | TATGACTTGAGTTGTTGGTG+GGG | + | chr1_1:78624181-78624200 | None:intergenic | 40.0% |
| ! | CTTATGACTTGAGTTGTTGG+TGG | + | chr1_1:78624183-78624202 | None:intergenic | 40.0% |
| AGGAATCTTCAGAAATCAGC+TGG | - | chr1_1:78624324-78624343 | Msa0046470:CDS | 40.0% | |
| ! | TCCAAGAGTTTTCCTCTTTC+TGG | - | chr1_1:78624357-78624376 | Msa0046470:CDS | 40.0% |
| ! | CCAAGAGTTTTCCTCTTTCT+GGG | - | chr1_1:78624358-78624377 | Msa0046470:CDS | 40.0% |
| GGTTCAAAACTACATACCAG+TGG | + | chr1_1:78624417-78624436 | None:intergenic | 40.0% | |
| TAATGTCAGCAACTCTCTTC+TGG | + | chr1_1:78624565-78624584 | None:intergenic | 40.0% | |
| AAGGAGATATCATGTATGGC+TGG | - | chr1_1:78624638-78624657 | Msa0046470:intron | 40.0% | |
| AGAGGTTAAAGAAGACACAG+AGG | - | chr1_1:78624764-78624783 | Msa0046470:intron | 40.0% | |
| CAGTGGCAACATAAACAGTA+AGG | + | chr1_1:78624804-78624823 | None:intergenic | 40.0% | |
| TGCAGACAAAAACACATGCA+GGG | + | chr1_1:78624840-78624859 | None:intergenic | 40.0% | |
| TTGCAGACAAAAACACATGC+AGG | + | chr1_1:78624841-78624860 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTCTGCAAGCTAG+AGG | - | chr1_1:78624846-78624865 | Msa0046470:intron | 40.0% |
| GCAAGCTAGAGGAATGTTAT+AGG | - | chr1_1:78624857-78624876 | Msa0046470:intron | 40.0% | |
| ! | ATAATGGCAACTTTAGGGGA+AGG | + | chr1_1:78625295-78625314 | None:intergenic | 40.0% |
| GCGGAATATCCGTTTGATAA+TGG | + | chr1_1:78625311-78625330 | None:intergenic | 40.0% | |
| CTAATTAACCACTGGATGAG+CGG | + | chr1_1:78625330-78625349 | None:intergenic | 40.0% | |
| ! | TATGACTTGAGTTGTTGGTG+GGG | + | chr1_1:78624181-78624200 | None:intergenic | 40.0% |
| ! | CTTATGACTTGAGTTGTTGG+TGG | + | chr1_1:78624183-78624202 | None:intergenic | 40.0% |
| AGGAATCTTCAGAAATCAGC+TGG | - | chr1_1:78624324-78624343 | Msa0046470:CDS | 40.0% | |
| ! | TCCAAGAGTTTTCCTCTTTC+TGG | - | chr1_1:78624357-78624376 | Msa0046470:CDS | 40.0% |
| ! | CCAAGAGTTTTCCTCTTTCT+GGG | - | chr1_1:78624358-78624377 | Msa0046470:CDS | 40.0% |
| GGTTCAAAACTACATACCAG+TGG | + | chr1_1:78624417-78624436 | None:intergenic | 40.0% | |
| TAATGTCAGCAACTCTCTTC+TGG | + | chr1_1:78624565-78624584 | None:intergenic | 40.0% | |
| AAGGAGATATCATGTATGGC+TGG | - | chr1_1:78624638-78624657 | Msa0046470:intron | 40.0% | |
| AGAGGTTAAAGAAGACACAG+AGG | - | chr1_1:78624764-78624783 | Msa0046470:intron | 40.0% | |
| CAGTGGCAACATAAACAGTA+AGG | + | chr1_1:78624804-78624823 | None:intergenic | 40.0% | |
| TGCAGACAAAAACACATGCA+GGG | + | chr1_1:78624840-78624859 | None:intergenic | 40.0% | |
| TTGCAGACAAAAACACATGC+AGG | + | chr1_1:78624841-78624860 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTCTGCAAGCTAG+AGG | - | chr1_1:78624846-78624865 | Msa0046470:intron | 40.0% |
| GCAAGCTAGAGGAATGTTAT+AGG | - | chr1_1:78624857-78624876 | Msa0046470:intron | 40.0% | |
| ! | ATAATGGCAACTTTAGGGGA+AGG | + | chr1_1:78625295-78625314 | None:intergenic | 40.0% |
| GCGGAATATCCGTTTGATAA+TGG | + | chr1_1:78625311-78625330 | None:intergenic | 40.0% | |
| CTAATTAACCACTGGATGAG+CGG | + | chr1_1:78625330-78625349 | None:intergenic | 40.0% | |
| ACACTCAGTTTCTGTTGGAG+AGG | - | chr1_1:78624247-78624266 | Msa0046470:three_prime_UTR | 45.0% | |
| CCCAGAAAGAGGAAAACTCT+TGG | + | chr1_1:78624361-78624380 | None:intergenic | 45.0% | |
| !! | TGGGACTAGTCTTGCATCTT+TGG | - | chr1_1:78624377-78624396 | Msa0046470:CDS | 45.0% |
| !! | GTTTTGTTGAGAACAGGTGC+AGG | - | chr1_1:78624502-78624521 | Msa0046470:intron | 45.0% |
| AGCAGAGACAGAGTCAATTG+TGG | - | chr1_1:78625171-78625190 | Msa0046470:intron | 45.0% | |
| !! | GGGGAAGGAGTCTTGTTTAA+TGG | + | chr1_1:78625280-78625299 | None:intergenic | 45.0% |
| ACACTCAGTTTCTGTTGGAG+AGG | - | chr1_1:78624247-78624266 | Msa0046470:three_prime_UTR | 45.0% | |
| CCCAGAAAGAGGAAAACTCT+TGG | + | chr1_1:78624361-78624380 | None:intergenic | 45.0% | |
| !! | TGGGACTAGTCTTGCATCTT+TGG | - | chr1_1:78624377-78624396 | Msa0046470:CDS | 45.0% |
| !! | GTTTTGTTGAGAACAGGTGC+AGG | - | chr1_1:78624502-78624521 | Msa0046470:intron | 45.0% |
| AGCAGAGACAGAGTCAATTG+TGG | - | chr1_1:78625171-78625190 | Msa0046470:intron | 45.0% | |
| !! | GGGGAAGGAGTCTTGTTTAA+TGG | + | chr1_1:78625280-78625299 | None:intergenic | 45.0% |
| ! | ACTTGAGTTGTTGGTGGGGT+TGG | + | chr1_1:78624177-78624196 | None:intergenic | 50.0% |
| ! | GCAAGACTAGTCCCAGAAAG+AGG | + | chr1_1:78624372-78624391 | None:intergenic | 50.0% |
| GACACAGAGGAAAAGAGCTG+TGG | - | chr1_1:78624777-78624796 | Msa0046470:intron | 50.0% | |
| ! | ACTTGAGTTGTTGGTGGGGT+TGG | + | chr1_1:78624177-78624196 | None:intergenic | 50.0% |
| ! | GCAAGACTAGTCCCAGAAAG+AGG | + | chr1_1:78624372-78624391 | None:intergenic | 50.0% |
| GACACAGAGGAAAAGAGCTG+TGG | - | chr1_1:78624777-78624796 | Msa0046470:intron | 50.0% | |
| GGAGTCTTTGTCACTGCCAC+TGG | - | chr1_1:78624398-78624417 | Msa0046470:CDS | 55.0% | |
| GTCAGCAACTCTCTTCTGGC+AGG | + | chr1_1:78624561-78624580 | None:intergenic | 55.0% | |
| CGGATATTCCGCTCATCCAG+TGG | - | chr1_1:78625319-78625338 | Msa0046470:CDS | 55.0% | |
| GGAGTCTTTGTCACTGCCAC+TGG | - | chr1_1:78624398-78624417 | Msa0046470:CDS | 55.0% | |
| GTCAGCAACTCTCTTCTGGC+AGG | + | chr1_1:78624561-78624580 | None:intergenic | 55.0% | |
| CGGATATTCCGCTCATCCAG+TGG | - | chr1_1:78625319-78625338 | Msa0046470:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78624132 | 78625524 | 78624132 | ID=Msa0046470;Name=Msa0046470 |
| chr1_1 | mRNA | 78624132 | 78625524 | 78624132 | ID=Msa0046470-mRNA-1;Parent=Msa0046470;Name=Msa0046470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|1|1|1|1|3|179|180 |
| chr1_1 | exon | 78624132 | 78624483 | 78624132 | ID=Msa0046470-mRNA-1:exon:27072;Parent=Msa0046470-mRNA-1 |
| chr1_1 | exon | 78625057 | 78625138 | 78625057 | ID=Msa0046470-mRNA-1:exon:27071;Parent=Msa0046470-mRNA-1 |
| chr1_1 | exon | 78625237 | 78625524 | 78625237 | ID=Msa0046470-mRNA-1:exon:27070;Parent=Msa0046470-mRNA-1 |
| chr1_1 | CDS | 78625237 | 78625524 | 78625237 | ID=Msa0046470-mRNA-1:cds;Parent=Msa0046470-mRNA-1 |
| chr1_1 | CDS | 78625057 | 78625138 | 78625057 | ID=Msa0046470-mRNA-1:cds;Parent=Msa0046470-mRNA-1 |
| chr1_1 | CDS | 78624311 | 78624483 | 78624311 | ID=Msa0046470-mRNA-1:cds;Parent=Msa0046470-mRNA-1 |
| chr1_1 | three_prime_UTR | 78624132 | 78624310 | 78624132 | ID=Msa0046470-mRNA-1:three_prime_utr;Parent=Msa0046470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
