Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0183570 | XP_013470289.1 | 100.000 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 6.01e-175 | 490 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0183570 | sp|Q9M4T8|PSA5_SOYBN | 98.312 | 237 | 4 | 0 | 1 | 237 | 1 | 237 | 1.96e-175 | 484 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0183570 | I3SSX1 | 100.000 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 2.87e-175 | 490 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0044190 | Msa0183570 | 0.968545 | 7.882206e-129 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0183570 | MtrunA17_Chr1g0210811 | 100.000 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 5.53e-179 | 490 |
Msa0183570 | MtrunA17_Chr6g0453891 | 62.150 | 214 | 64 | 5 | 31 | 237 | 133 | 336 | 4.60e-75 | 230 |
Msa0183570 | MtrunA17_Chr7g0243311 | 45.161 | 217 | 107 | 5 | 8 | 218 | 5 | 215 | 2.41e-58 | 185 |
Msa0183570 | MtrunA17_Chr5g0401801 | 44.550 | 211 | 109 | 4 | 8 | 213 | 5 | 212 | 7.15e-55 | 175 |
Msa0183570 | MtrunA17_Chr2g0283841 | 40.343 | 233 | 129 | 5 | 6 | 234 | 2 | 228 | 1.22e-50 | 165 |
Msa0183570 | MtrunA17_Chr8g0371571 | 41.593 | 226 | 124 | 4 | 8 | 231 | 4 | 223 | 1.36e-50 | 165 |
Msa0183570 | MtrunA17_Chr0c02g0489661 | 35.526 | 228 | 142 | 2 | 6 | 231 | 4 | 228 | 1.46e-47 | 157 |
Msa0183570 | MtrunA17_Chr1g0155371 | 46.154 | 182 | 93 | 2 | 3 | 184 | 1 | 177 | 2.95e-47 | 157 |
Msa0183570 | MtrunA17_Chr8g0360781 | 34.199 | 231 | 142 | 5 | 8 | 231 | 9 | 236 | 1.43e-40 | 139 |
Msa0183570 | MtrunA17_Chr2g0308541 | 32.900 | 231 | 145 | 5 | 8 | 231 | 9 | 236 | 7.38e-39 | 135 |
Msa0183570 | MtrunA17_Chr6g0459741 | 34.783 | 207 | 120 | 2 | 6 | 206 | 6 | 203 | 3.31e-38 | 133 |
Msa0183570 | MtrunA17_Chr4g0004521 | 37.143 | 175 | 91 | 4 | 22 | 185 | 7 | 173 | 3.55e-26 | 102 |
Msa0183570 | MtrunA17_Chr4g0027841 | 34.239 | 184 | 97 | 7 | 11 | 184 | 91 | 260 | 5.53e-18 | 81.3 |
Msa0183570 | MtrunA17_Chr3g0116161 | 28.313 | 166 | 107 | 3 | 34 | 196 | 54 | 210 | 8.94e-15 | 71.6 |
Msa0183570 | MtrunA17_Chr5g0394931 | 30.464 | 151 | 94 | 3 | 45 | 192 | 13 | 155 | 7.56e-13 | 65.5 |
Msa0183570 | MtrunA17_Chr5g0399161 | 28.249 | 177 | 114 | 4 | 42 | 213 | 10 | 178 | 9.02e-13 | 65.1 |
Msa0183570 | MtrunA17_Chr7g0228681 | 24.873 | 197 | 138 | 4 | 31 | 225 | 35 | 223 | 5.86e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0183570 | AT3G14290.1 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 1.15e-175 | 482 |
Msa0183570 | AT1G53850.1 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.52e-175 | 481 |
Msa0183570 | AT1G53850.2 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.52e-175 | 481 |
Msa0183570 | AT3G22110.1 | 41.494 | 241 | 123 | 7 | 8 | 236 | 5 | 239 | 1.13e-56 | 181 |
Msa0183570 | AT5G66140.1 | 43.000 | 200 | 108 | 3 | 8 | 205 | 4 | 199 | 6.01e-48 | 159 |
Msa0183570 | AT1G16470.1 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.54e-47 | 157 |
Msa0183570 | AT1G16470.2 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.54e-47 | 157 |
Msa0183570 | AT3G51260.2 | 41.038 | 212 | 117 | 4 | 7 | 216 | 3 | 208 | 1.62e-47 | 157 |
Msa0183570 | AT1G79210.1 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.66e-47 | 157 |
Msa0183570 | AT1G79210.2 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.66e-47 | 157 |
Msa0183570 | AT1G79210.3 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.66e-47 | 157 |
Msa0183570 | AT3G51260.1 | 42.500 | 200 | 109 | 3 | 8 | 205 | 4 | 199 | 2.64e-47 | 157 |
Msa0183570 | AT5G42790.1 | 39.506 | 243 | 125 | 4 | 3 | 234 | 1 | 232 | 1.98e-46 | 155 |
Msa0183570 | AT1G47250.1 | 45.856 | 181 | 93 | 2 | 3 | 183 | 1 | 176 | 3.04e-46 | 155 |
Msa0183570 | AT5G35590.1 | 35.498 | 231 | 139 | 5 | 8 | 231 | 9 | 236 | 2.85e-41 | 141 |
Msa0183570 | AT2G27020.1 | 33.333 | 207 | 123 | 2 | 6 | 206 | 6 | 203 | 5.72e-38 | 133 |
Msa0183570 | AT2G05840.2 | 34.434 | 212 | 132 | 4 | 8 | 215 | 9 | 217 | 2.10e-37 | 130 |
Msa0183570 | AT2G05840.1 | 34.419 | 215 | 134 | 4 | 8 | 218 | 9 | 220 | 2.79e-37 | 131 |
Msa0183570 | AT2G27020.2 | 33.333 | 207 | 123 | 2 | 6 | 206 | 108 | 305 | 8.48e-37 | 132 |
Msa0183570 | AT4G15165.1 | 31.535 | 241 | 105 | 6 | 8 | 236 | 5 | 197 | 3.82e-35 | 124 |
Msa0183570 | AT2G05840.3 | 35.263 | 190 | 118 | 3 | 8 | 195 | 9 | 195 | 6.10e-35 | 124 |
Msa0183570 | AT3G26340.1 | 26.500 | 200 | 132 | 5 | 27 | 220 | 48 | 238 | 7.75e-15 | 72.4 |
Msa0183570 | AT1G13060.1 | 25.654 | 191 | 129 | 4 | 34 | 220 | 57 | 238 | 1.07e-13 | 69.3 |
Msa0183570 | AT4G14800.1 | 28.652 | 178 | 115 | 4 | 45 | 218 | 13 | 182 | 2.99e-12 | 63.9 |
Msa0183570 | AT5G40580.1 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.91e-12 | 64.7 |
Msa0183570 | AT5G40580.2 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.91e-12 | 64.7 |
Msa0183570 | AT3G27430.2 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 7.44e-12 | 63.9 |
Msa0183570 | AT4G14800.2 | 28.495 | 186 | 121 | 4 | 45 | 218 | 13 | 198 | 7.59e-12 | 63.2 |
Msa0183570 | AT3G27430.1 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 9.28e-12 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCCTTCTGGCACATTT+TGG | 0.189061 | 1_4:+72533060 | Msa0183570:CDS |
TCCCGAAGGACGTTTGTTTC+AGG | 0.228080 | 1_4:+72530214 | Msa0183570:CDS |
GTGACCTAGCCTTGCGCTTT+GGG | 0.251856 | 1_4:+72531573 | Msa0183570:CDS |
ATATGCAATTGAAGCTATTA+AGG | 0.287746 | 1_4:+72530241 | Msa0183570:CDS |
CTTTGGCAGTCTCGACCATT+TGG | 0.312188 | 1_4:+72532033 | Msa0183570:intron |
TAAAATAGTATCACAGCGTT+TGG | 0.327818 | 1_4:+72534738 | Msa0183570:three_prime_UTR |
AGACTGAATATCAGAAAATA+TGG | 0.331191 | 1_4:-72534699 | None:intergenic |
GGAGTGTCTCTCCTTATTGC+TGG | 0.335194 | 1_4:+72532054 | Msa0183570:CDS |
TGTGACCTAGCCTTGCGCTT+TGG | 0.345737 | 1_4:+72531572 | Msa0183570:CDS |
CAGAATCACAGGTTCTCTTA+TGG | 0.347192 | 1_4:+72531512 | Msa0183570:intron |
CAATGCAATGCAAAGGCTAT+TGG | 0.347609 | 1_4:+72533083 | Msa0183570:CDS |
TCTCGTCATGGCCAGCAATA+AGG | 0.348529 | 1_4:-72532065 | None:intergenic |
AATCAAATCACGCAAATAGA+TGG | 0.363237 | 1_4:-72534594 | None:intergenic |
CAGCAGTGTGGAGAAAATTA+TGG | 0.366170 | 1_4:+72531308 | Msa0183570:CDS |
ATCAATTCTGAAGCAAGTTA+TGG | 0.388035 | 1_4:+72534375 | Msa0183570:CDS |
AACCTGAAACAAACGTCCTT+CGG | 0.394934 | 1_4:-72530216 | None:intergenic |
TTGGTTTGATTTGATTTGAA+TGG | 0.405827 | 1_4:-72530002 | None:intergenic |
CCAACAACGTTGACATTGCC+AGG | 0.408754 | 1_4:+72534505 | Msa0183570:CDS |
ACCTGAAACAAACGTCCTTC+GGG | 0.423347 | 1_4:-72530215 | None:intergenic |
CCTGGCAATGTCAACGTTGT+TGG | 0.426746 | 1_4:-72534505 | None:intergenic |
CAGCTTGGATCAACTGCGAT+TGG | 0.442542 | 1_4:+72530353 | Msa0183570:intron |
AAAATAGTATCACAGCGTTT+GGG | 0.453345 | 1_4:+72534739 | Msa0183570:three_prime_UTR |
CTGGCAATGTCAACGTTGTT+GGG | 0.454160 | 1_4:-72534504 | None:intergenic |
GCGTATTACTTCGCCTCTAC+TGG | 0.457074 | 1_4:+72530415 | Msa0183570:CDS |
AGATATTACACTGATCCTTC+TGG | 0.466365 | 1_4:+72533050 | Msa0183570:intron |
CGCAAATAGATGGAAATCAT+AGG | 0.479822 | 1_4:-72534584 | None:intergenic |
AATGCAAAGGCTATTGGTTC+AGG | 0.500036 | 1_4:+72533089 | Msa0183570:CDS |
CTAGCCTTGCGCTTTGGGGA+AGG | 0.509941 | 1_4:+72531578 | Msa0183570:CDS |
ATTGCTGGCCATGACGAGAA+TGG | 0.514622 | 1_4:+72532069 | Msa0183570:CDS |
TATATTATCGAGTGTGGAGA+TGG | 0.521151 | 1_4:+72534849 | Msa0183570:three_prime_UTR |
GGAATATATACTTACAGGCT+AGG | 0.527284 | 1_4:-72532093 | None:intergenic |
ATCACAGCTTCCACCTCAGA+CGG | 0.535599 | 1_4:-72534555 | None:intergenic |
TCACAGCTTCCACCTCAGAC+GGG | 0.536535 | 1_4:-72534554 | None:intergenic |
TCTTTATACCCCGTCTGAGG+TGG | 0.544181 | 1_4:+72534545 | Msa0183570:CDS |
CTTGAAAACGAAAGAGGGTG+TGG | 0.545014 | 1_4:+72530376 | Msa0183570:CDS |
ATGATACGCTGGAGCAACCC+TGG | 0.548475 | 1_4:-72534523 | None:intergenic |
TGAATATCAGAAAATATGGT+AGG | 0.556483 | 1_4:-72534695 | None:intergenic |
CTTCCCCAAAGCGCAAGGCT+AGG | 0.558153 | 1_4:-72531577 | None:intergenic |
ATCTAGTATTGCATACAACT+TGG | 0.561296 | 1_4:-72534669 | None:intergenic |
TAACCTTGTGAGAAACATGT+TGG | 0.566164 | 1_4:-72530021 | None:intergenic |
GAAGCAAGTTATGGAAGAGA+AGG | 0.568369 | 1_4:+72534384 | Msa0183570:CDS |
GGCTAGGTCCATTCTCGTCA+TGG | 0.580425 | 1_4:-72532077 | None:intergenic |
ATAAGGAGAGACACTCCAAA+TGG | 0.589626 | 1_4:-72532048 | None:intergenic |
TGACCTAGCCTTGCGCTTTG+GGG | 0.590485 | 1_4:+72531574 | Msa0183570:CDS |
ATCACCTTCCCCAAAGCGCA+AGG | 0.591699 | 1_4:-72531582 | None:intergenic |
GCTATTGGTTCAGGATCAGA+AGG | 0.597231 | 1_4:+72533098 | Msa0183570:CDS |
GGAAGGTGATGAAGAATCCA+TGG | 0.599188 | 1_4:+72531595 | Msa0183570:CDS |
CTAGTATATATTATCGAGTG+TGG | 0.602194 | 1_4:+72534843 | Msa0183570:three_prime_UTR |
GTTGTAGACTCTACAGTCAT+CGG | 0.602200 | 1_4:-72531539 | None:intergenic |
CACATTGGCTGTGCAATGAG+TGG | 0.606594 | 1_4:+72531342 | Msa0183570:CDS |
GATTGGCTTGAAAACGAAAG+AGG | 0.610207 | 1_4:+72530370 | Msa0183570:CDS |
CATTGCCAAAATGTGCCAGA+AGG | 0.618837 | 1_4:-72533065 | None:intergenic |
AAACCAACATGTTTCTCACA+AGG | 0.620638 | 1_4:+72530018 | Msa0183570:exon |
ATGGAAATTGATGATCACAT+TGG | 0.621320 | 1_4:+72531327 | Msa0183570:CDS |
GAATAGGTACATACCAGTAG+AGG | 0.625077 | 1_4:-72530428 | None:intergenic |
ATTGGCTTGAAAACGAAAGA+GGG | 0.626167 | 1_4:+72530371 | Msa0183570:CDS |
TCATCTTTATACCCCGTCTG+AGG | 0.634475 | 1_4:+72534542 | Msa0183570:CDS |
CAACAACGTTGACATTGCCA+GGG | 0.635659 | 1_4:+72534506 | Msa0183570:CDS |
CACAGCTTCCACCTCAGACG+GGG | 0.645540 | 1_4:-72534553 | None:intergenic |
GGGGTATAAAGATGATACGC+TGG | 0.658506 | 1_4:-72534534 | None:intergenic |
GCATGCACGAGTTGAAACTC+AGG | 0.662565 | 1_4:+72531395 | Msa0183570:CDS |
CTTTCAGGAGCCCAGCAGTG+TGG | 0.675944 | 1_4:+72531296 | Msa0183570:intron |
ATTAGAACTGAGTATGACCG+TGG | 0.689159 | 1_4:+72530176 | Msa0183570:intron |
TCTGCAAGAACAATTCAACA+AGG | 0.713271 | 1_4:+72533133 | Msa0183570:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTAATTTTTTTTTTTTTGT+TGG | + | chr1_4:72530326-72530345 | Msa0183570:intron | 10.0% |
!! | CAAAAAAAAATTACATAAAA+GGG | - | chr1_4:72530453-72530472 | None:intergenic | 10.0% |
!! | ACAAAAAAAAATTACATAAA+AGG | - | chr1_4:72530454-72530473 | None:intergenic | 10.0% |
!!! | TTTAGAATAAATTGAATTAT+GGG | + | chr1_4:72530775-72530794 | Msa0183570:intron | 10.0% |
!!! | TTTATAATTTAAAATGTTGT+TGG | + | chr1_4:72534206-72534225 | Msa0183570:intron | 10.0% |
!! | AATTCAATCATAAAAAAATT+AGG | + | chr1_4:72534900-72534919 | Msa0183570:three_prime_UTR | 10.0% |
!! | ATTCAATCATAAAAAAATTA+GGG | + | chr1_4:72534901-72534920 | Msa0183570:three_prime_UTR | 10.0% |
!!! | GTTTAGAATAAATTGAATTA+TGG | + | chr1_4:72530774-72530793 | Msa0183570:intron | 15.0% |
!! | TTAGAATAAATTGAATTATG+GGG | + | chr1_4:72530776-72530795 | Msa0183570:intron | 15.0% |
!!! | ATATTGATATTGATCTATTT+TGG | + | chr1_4:72531478-72531497 | Msa0183570:intron | 15.0% |
!!! | TTTTTTTATTAGTGTACAAA+TGG | + | chr1_4:72531901-72531920 | Msa0183570:intron | 15.0% |
!!! | TTTTTTATTAGTGTACAAAT+GGG | + | chr1_4:72531902-72531921 | Msa0183570:intron | 15.0% |
!!! | CTTTCTTATTATTTCTTTAA+TGG | + | chr1_4:72532553-72532572 | Msa0183570:intron | 15.0% |
!! | ATATCATTAAAATTATTAGC+TGG | + | chr1_4:72533202-72533221 | Msa0183570:intron | 15.0% |
!! | TATCATTAAAATTATTAGCT+GGG | + | chr1_4:72533203-72533222 | Msa0183570:intron | 15.0% |
!! | TATTAATTACCTTAATTCTT+TGG | + | chr1_4:72534070-72534089 | Msa0183570:intron | 15.0% |
!! | ATTAATTACCTTAATTCTTT+GGG | + | chr1_4:72534071-72534090 | Msa0183570:intron | 15.0% |
!! | AGTAAAAATATATAATAGCA+CGG | - | chr1_4:72534808-72534827 | None:intergenic | 15.0% |
!! | ACAAAAATCCTAATACATTT+GGG | - | chr1_4:72530122-72530141 | None:intergenic | 20.0% |
!! | AACAAAAATCCTAATACATT+TGG | - | chr1_4:72530123-72530142 | None:intergenic | 20.0% |
!! | ACCCTAATAATAATAATAGA+GGG | - | chr1_4:72530274-72530293 | None:intergenic | 20.0% |
!! | AACCCTAATAATAATAATAG+AGG | - | chr1_4:72530275-72530294 | None:intergenic | 20.0% |
!! | AAAATTACATAAAAGGGAAT+AGG | - | chr1_4:72530447-72530466 | None:intergenic | 20.0% |
!! | AATAAATATGACTATAAGCA+CGG | - | chr1_4:72531219-72531238 | None:intergenic | 20.0% |
!! | AAATTGTAATGTATGTTTCA+TGG | - | chr1_4:72531261-72531280 | None:intergenic | 20.0% |
!!! | CAACAATAGATTTTAAGTTT+AGG | - | chr1_4:72531830-72531849 | None:intergenic | 20.0% |
!! | CTAAACTTAAAATCTATTGT+TGG | + | chr1_4:72531828-72531847 | Msa0183570:intron | 20.0% |
!! | ATATTAAACATTCCTATGAA+AGG | + | chr1_4:72531851-72531870 | Msa0183570:intron | 20.0% |
!! | ATAAAAAAACACCTTACAAA+AGG | - | chr1_4:72531890-72531909 | None:intergenic | 20.0% |
!!! | TACCATTTATTTTTTCTCTT+TGG | + | chr1_4:72532016-72532035 | Msa0183570:intron | 20.0% |
!! | ATTAGTTAAATTACAGAGAA+AGG | + | chr1_4:72532257-72532276 | Msa0183570:intron | 20.0% |
!! | ATGTTAAAACATTTCTAAAC+CGG | + | chr1_4:72532356-72532375 | Msa0183570:intron | 20.0% |
!! | AACAAAAATGAGAAAATTAC+AGG | - | chr1_4:72532405-72532424 | None:intergenic | 20.0% |
!! | ATAAAAAAGAAAGAAGTGAT+GGG | - | chr1_4:72532463-72532482 | None:intergenic | 20.0% |
!! | AATAAAAAAGAAAGAAGTGA+TGG | - | chr1_4:72532464-72532483 | None:intergenic | 20.0% |
!!! | ATTTATTTCCTTTTTCATTC+TGG | + | chr1_4:72532990-72533009 | Msa0183570:intron | 20.0% |
!! | TGTTAAATAGATACACAAAA+TGG | + | chr1_4:72533900-72533919 | Msa0183570:intron | 20.0% |
!! | TTAATTACCTTAATTCTTTG+GGG | + | chr1_4:72534072-72534091 | Msa0183570:intron | 20.0% |
!! | AAGAGTTGAATATGATTTAT+AGG | - | chr1_4:72534103-72534122 | None:intergenic | 20.0% |
!!! | AGAATATCAATATGATTTGT+AGG | - | chr1_4:72534127-72534146 | None:intergenic | 20.0% |
!! | TCATAAAAAAATTAGGGTAA+AGG | + | chr1_4:72534907-72534926 | Msa0183570:three_prime_UTR | 20.0% |
!! | CATAAAAAAATTAGGGTAAA+GGG | + | chr1_4:72534908-72534927 | Msa0183570:three_prime_UTR | 20.0% |
! | ATTGGAAAAAAGTTACCTAA+AGG | - | chr1_4:72529896-72529915 | None:intergenic | 25.0% |
!!! | TTGGTTTGATTTGATTTGAA+TGG | - | chr1_4:72530005-72530024 | None:intergenic | 25.0% |
!! | TAATTTTCCCCAAATGTATT+AGG | + | chr1_4:72530111-72530130 | Msa0183570:intron | 25.0% |
! | CAAAAATCCTAATACATTTG+GGG | - | chr1_4:72530121-72530140 | None:intergenic | 25.0% |
!!! | GTATTAGGATTTTTGTTTCT+AGG | + | chr1_4:72530126-72530145 | Msa0183570:intron | 25.0% |
! | ATATGCAATTGAAGCTATTA+AGG | + | chr1_4:72530241-72530260 | Msa0183570:CDS | 25.0% |
! | TGCCCTCTATTATTATTATT+AGG | + | chr1_4:72530269-72530288 | Msa0183570:intron | 25.0% |
! | GCCCTCTATTATTATTATTA+GGG | + | chr1_4:72530270-72530289 | Msa0183570:intron | 25.0% |
!!! | GGTTTTTAACTATCTGTATT+CGG | + | chr1_4:72530291-72530310 | Msa0183570:intron | 25.0% |
!!! | GTTTTTAACTATCTGTATTC+GGG | + | chr1_4:72530292-72530311 | Msa0183570:intron | 25.0% |
!! | TCAGAATTACATCTAAAACT+GGG | - | chr1_4:72531158-72531177 | None:intergenic | 25.0% |
!! | TTCAGAATTACATCTAAAAC+TGG | - | chr1_4:72531159-72531178 | None:intergenic | 25.0% |
! | AATAGAATGTTGTATGTAGT+TGG | + | chr1_4:72531435-72531454 | Msa0183570:intron | 25.0% |
!!! | TTTATTTTTCACAGAATCAC+AGG | + | chr1_4:72531501-72531520 | Msa0183570:intron | 25.0% |
! | TGCATATTCTGAATGTTTAA+TGG | + | chr1_4:72531757-72531776 | Msa0183570:intron | 25.0% |
! | TGCCAAAGAGAAAAAATAAA+TGG | - | chr1_4:72532021-72532040 | None:intergenic | 25.0% |
! | TAGATGGAATATATACTTAC+AGG | - | chr1_4:72532101-72532120 | None:intergenic | 25.0% |
!! | AAAAGAAAGTGTAACATACA+AGG | - | chr1_4:72532231-72532250 | None:intergenic | 25.0% |
!! | TATGTTACACTTTCTTTTCT+GGG | + | chr1_4:72532233-72532252 | Msa0183570:intron | 25.0% |
! | AAATTCTTGTCAAATATGTC+CGG | - | chr1_4:72532378-72532397 | None:intergenic | 25.0% |
!!! | TTTCTCATTTTTGTTTCACT+TGG | + | chr1_4:72532410-72532429 | Msa0183570:intron | 25.0% |
!!! | TTCACAAATACTTTTGAGAA+AGG | - | chr1_4:72532494-72532513 | None:intergenic | 25.0% |
! | GAAATAATAAGAAAGAGTGA+AGG | - | chr1_4:72532548-72532567 | None:intergenic | 25.0% |
!!! | TATTTTGATTTTGTAGGATC+AGG | + | chr1_4:72532913-72532932 | Msa0183570:intron | 25.0% |
! | ATTAAAATTATTAGCTGGGA+TGG | + | chr1_4:72533207-72533226 | Msa0183570:intron | 25.0% |
!! | TGTTATTTGCAACAGTATTA+AGG | - | chr1_4:72534045-72534064 | None:intergenic | 25.0% |
! | AGACAAAAATATACAAGAGA+TGG | - | chr1_4:72534161-72534180 | None:intergenic | 25.0% |
!!! | ATCTCTTGTATATTTTTGTC+TGG | + | chr1_4:72534160-72534179 | Msa0183570:intron | 25.0% |
! | TTGCTTAAAGATTATCTTTC+AGG | + | chr1_4:72534255-72534274 | Msa0183570:intron | 25.0% |
!! | ATTGATTTATTATGTTGTGC+AGG | + | chr1_4:72534318-72534337 | Msa0183570:intron | 25.0% |
! | TTAGAATATATTCTCAGTAG+GGG | - | chr1_4:72534451-72534470 | None:intergenic | 25.0% |
! | GTTAGAATATATTCTCAGTA+GGG | - | chr1_4:72534452-72534471 | None:intergenic | 25.0% |
! | AGTTAGAATATATTCTCAGT+AGG | - | chr1_4:72534453-72534472 | None:intergenic | 25.0% |
! | TGAATATCAGAAAATATGGT+AGG | - | chr1_4:72534698-72534717 | None:intergenic | 25.0% |
! | AGACTGAATATCAGAAAATA+TGG | - | chr1_4:72534702-72534721 | None:intergenic | 25.0% |
AGAAGAAGAAGAAGAGAAAA+GGG | - | chr1_4:72529925-72529944 | None:intergenic | 30.0% | |
AAGAAGAAGAAGAAGAGAAA+AGG | - | chr1_4:72529926-72529945 | None:intergenic | 30.0% | |
GATAGATCACTGCATAAAAA+TGG | - | chr1_4:72529978-72529997 | None:intergenic | 30.0% | |
TAAAAGAGTGAGAGAGAAAA+GGG | - | chr1_4:72530049-72530068 | None:intergenic | 30.0% | |
ATAAAAGAGTGAGAGAGAAA+AGG | - | chr1_4:72530050-72530069 | None:intergenic | 30.0% | |
! | TTTTCTCTCTCACTCTTTTA+TGG | + | chr1_4:72530049-72530068 | Msa0183570:intron | 30.0% |
!!! | TTTTTTGTTGGATTTCAGCT+TGG | + | chr1_4:72530338-72530357 | Msa0183570:intron | 30.0% |
ATGAAAATCTGCCCTAAAAA+GGG | - | chr1_4:72530686-72530705 | None:intergenic | 30.0% | |
! | CACGCATATTTTTCTTACTT+GGG | - | chr1_4:72530723-72530742 | None:intergenic | 30.0% |
AATTGAATTATGGGGATATC+TGG | + | chr1_4:72530784-72530803 | Msa0183570:intron | 30.0% | |
! | ACTGCTGTTTGATAATTTGT+TGG | - | chr1_4:72530936-72530955 | None:intergenic | 30.0% |
TGTGTTAAAATTCCACTTTC+AGG | + | chr1_4:72531281-72531300 | Msa0183570:intron | 30.0% | |
! | ATGGAAATTGATGATCACAT+TGG | + | chr1_4:72531327-72531346 | Msa0183570:CDS | 30.0% |
AGCTAAGAAGTTATATACCA+TGG | - | chr1_4:72531615-72531634 | None:intergenic | 30.0% | |
TCGTAAAAGATACTTACTAG+TGG | + | chr1_4:72531957-72531976 | Msa0183570:intron | 30.0% | |
TATATATTCCATCTAAGCCA+TGG | + | chr1_4:72532106-72532125 | Msa0183570:intron | 30.0% | |
AACACAGAAAATGAGTCAAA+AGG | - | chr1_4:72532160-72532179 | None:intergenic | 30.0% | |
! | GTATGTTACACTTTCTTTTC+TGG | + | chr1_4:72532232-72532251 | Msa0183570:intron | 30.0% |
! | ATGTTACACTTTCTTTTCTG+GGG | + | chr1_4:72532234-72532253 | Msa0183570:intron | 30.0% |
! | GAGAATGATGCTATAGTTTT+AGG | + | chr1_4:72532582-72532601 | Msa0183570:intron | 30.0% |
! | GTAAATACATCTTTTCTGTG+CGG | + | chr1_4:72532638-72532657 | Msa0183570:intron | 30.0% |
TTCTTGTTCAAACTAGTTCA+TGG | + | chr1_4:72532721-72532740 | Msa0183570:intron | 30.0% | |
TTGAGTCTCAAATCCTAATT+GGG | - | chr1_4:72532808-72532827 | None:intergenic | 30.0% | |
ATTGAGTCTCAAATCCTAAT+TGG | - | chr1_4:72532809-72532828 | None:intergenic | 30.0% | |
!! | TGCATTAATTTGTCTGTGAT+GGG | - | chr1_4:72532855-72532874 | None:intergenic | 30.0% |
AGAAAATAATTGCACAGCAT+GGG | + | chr1_4:72532890-72532909 | Msa0183570:intron | 30.0% | |
!!! | CATGGGTATTTTGATTTTGT+AGG | + | chr1_4:72532907-72532926 | Msa0183570:intron | 30.0% |
!! | GGTTTTTCAATAGAACATCA+TGG | - | chr1_4:72533455-72533474 | None:intergenic | 30.0% |
CTATAAGGAGACTATTAAGA+AGG | - | chr1_4:72533509-72533528 | None:intergenic | 30.0% | |
! | AGTCTCCTTATAGTTTTTCT+AGG | + | chr1_4:72533516-72533535 | Msa0183570:intron | 30.0% |
GAAGACCTAGAAAAACTATA+AGG | - | chr1_4:72533524-72533543 | None:intergenic | 30.0% | |
TTCTACCATCTTTCTACTAT+AGG | + | chr1_4:72533644-72533663 | Msa0183570:intron | 30.0% | |
TCATCTATAGTAGAAAGATG+GGG | - | chr1_4:72533675-72533694 | None:intergenic | 30.0% | |
GTCATCTATAGTAGAAAGAT+GGG | - | chr1_4:72533676-72533695 | None:intergenic | 30.0% | |
! | AAATTCTTTTAGACGCAGAA+AGG | - | chr1_4:72533728-72533747 | None:intergenic | 30.0% |
TTTCTGCGTCTAAAAGAATT+TGG | + | chr1_4:72533727-72533746 | Msa0183570:intron | 30.0% | |
TTCTGCGTCTAAAAGAATTT+GGG | + | chr1_4:72533728-72533747 | Msa0183570:intron | 30.0% | |
AAAAGAATTTGGGCTCTATT+TGG | + | chr1_4:72533738-72533757 | Msa0183570:intron | 30.0% | |
TCTCCATTTCTCAAAACAAA+TGG | - | chr1_4:72533869-72533888 | None:intergenic | 30.0% | |
AAGATTATCTTTCAGGATAG+AGG | + | chr1_4:72534262-72534281 | Msa0183570:intron | 30.0% | |
GACATGAAAACAAGTGAATT+TGG | + | chr1_4:72534294-72534313 | Msa0183570:intron | 30.0% | |
!! | ATCAATTCTGAAGCAAGTTA+TGG | + | chr1_4:72534375-72534394 | Msa0183570:CDS | 30.0% |
TAGAATATATTCTCAGTAGG+GGG | - | chr1_4:72534450-72534469 | None:intergenic | 30.0% | |
TTCTTCTGTACTTTCACATT+AGG | + | chr1_4:72534476-72534495 | Msa0183570:intron | 30.0% | |
AATCAAATCACGCAAATAGA+TGG | - | chr1_4:72534597-72534616 | None:intergenic | 30.0% | |
ATCTAGTATTGCATACAACT+TGG | - | chr1_4:72534672-72534691 | None:intergenic | 30.0% | |
TAAAATAGTATCACAGCGTT+TGG | + | chr1_4:72534738-72534757 | Msa0183570:three_prime_UTR | 30.0% | |
AAAATAGTATCACAGCGTTT+GGG | + | chr1_4:72534739-72534758 | Msa0183570:three_prime_UTR | 30.0% | |
CTAGTATATATTATCGAGTG+TGG | + | chr1_4:72534843-72534862 | Msa0183570:three_prime_UTR | 30.0% | |
AGATCACTGCATAAAAATGG+CGG | - | chr1_4:72529975-72529994 | None:intergenic | 35.0% | |
AAACCAACATGTTTCTCACA+AGG | + | chr1_4:72530018-72530037 | Msa0183570:exon | 35.0% | |
TAACCTTGTGAGAAACATGT+TGG | - | chr1_4:72530024-72530043 | None:intergenic | 35.0% | |
TTAACTATCTGTATTCGGGT+TGG | + | chr1_4:72530296-72530315 | Msa0183570:intron | 35.0% | |
!! | ATTGGCTTGAAAACGAAAGA+GGG | + | chr1_4:72530371-72530390 | Msa0183570:CDS | 35.0% |
!!! | TTACCCTGTTTTTACACAAG+AGG | - | chr1_4:72530575-72530594 | None:intergenic | 35.0% |
TCTTGTGTAAAAACAGGGTA+AGG | + | chr1_4:72530574-72530593 | Msa0183570:intron | 35.0% | |
GATGAAAATCTGCCCTAAAA+AGG | - | chr1_4:72530687-72530706 | None:intergenic | 35.0% | |
! | GCACGCATATTTTTCTTACT+TGG | - | chr1_4:72530724-72530743 | None:intergenic | 35.0% |
CATTATTAACCTCACCATAG+CGG | - | chr1_4:72530850-72530869 | None:intergenic | 35.0% | |
AAGTTTGTGGACATTTCACA+TGG | - | chr1_4:72531095-72531114 | None:intergenic | 35.0% | |
AAAACTGGGTATAACACGTT+TGG | - | chr1_4:72531144-72531163 | None:intergenic | 35.0% | |
! | ATAATTTTCTCCACACTGCT+GGG | - | chr1_4:72531309-72531328 | None:intergenic | 35.0% |
TGCTTACAGTGCTTTCTTTA+AGG | + | chr1_4:72531663-72531682 | Msa0183570:intron | 35.0% | |
TTCAGAATATGCAACACACA+AGG | - | chr1_4:72531750-72531769 | None:intergenic | 35.0% | |
!! | ATACTTACTAGTGGTGTTGT+TGG | + | chr1_4:72531966-72531985 | Msa0183570:intron | 35.0% |
GGAATATATACTTACAGGCT+AGG | - | chr1_4:72532096-72532115 | None:intergenic | 35.0% | |
GTGTAACATACAAGGAACAA+CGG | - | chr1_4:72532223-72532242 | None:intergenic | 35.0% | |
AATTACAGAGAAAGGACATG+TGG | + | chr1_4:72532265-72532284 | Msa0183570:intron | 35.0% | |
! | AAGAACAGTCGCAATTTTTC+TGG | + | chr1_4:72532301-72532320 | Msa0183570:intron | 35.0% |
GGATATACATATGCAAAGAG+TGG | + | chr1_4:72532322-72532341 | Msa0183570:intron | 35.0% | |
!! | TTTTGTTTCACTTGGTTCCT+TGG | + | chr1_4:72532418-72532437 | Msa0183570:intron | 35.0% |
TGTATTTACGCACACATCAA+TGG | - | chr1_4:72532627-72532646 | None:intergenic | 35.0% | |
GTTTCCTGTTATGGTTCAAA+AGG | - | chr1_4:72532760-72532779 | None:intergenic | 35.0% | |
CCACTAAATGTTTCCTGTTA+TGG | - | chr1_4:72532769-72532788 | None:intergenic | 35.0% | |
CCATAACAGGAAACATTTAG+TGG | + | chr1_4:72532766-72532785 | Msa0183570:intron | 35.0% | |
AGGAAACATTTAGTGGTAGT+TGG | + | chr1_4:72532773-72532792 | Msa0183570:intron | 35.0% | |
TGAGTCTCAAATCCTAATTG+GGG | - | chr1_4:72532807-72532826 | None:intergenic | 35.0% | |
! | TAATTTGTCTGTGATGGGAA+TGG | - | chr1_4:72532850-72532869 | None:intergenic | 35.0% |
!! | CTGCATTAATTTGTCTGTGA+TGG | - | chr1_4:72532856-72532875 | None:intergenic | 35.0% |
CAGAAAATAATTGCACAGCA+TGG | + | chr1_4:72532889-72532908 | Msa0183570:intron | 35.0% | |
CCAATAGTCCAGAATGAAAA+AGG | - | chr1_4:72533001-72533020 | None:intergenic | 35.0% | |
!! | CCTTTTTCATTCTGGACTAT+TGG | + | chr1_4:72532998-72533017 | Msa0183570:intron | 35.0% |
AGATATTACACTGATCCTTC+TGG | + | chr1_4:72533050-72533069 | Msa0183570:intron | 35.0% | |
!! | ATTTTGGCAATGCAATGCAA+AGG | + | chr1_4:72533076-72533095 | Msa0183570:CDS | 35.0% |
TCTGCAAGAACAATTCAACA+AGG | + | chr1_4:72533133-72533152 | Msa0183570:CDS | 35.0% | |
TAATAAGCTGGAGAAAGACA+TGG | - | chr1_4:72533476-72533495 | None:intergenic | 35.0% | |
TCTCCAGCTTATTAATCTCT+AGG | + | chr1_4:72533482-72533501 | Msa0183570:intron | 35.0% | |
CTCCTTACTACAAAATCCAT+AGG | + | chr1_4:72533585-72533604 | Msa0183570:intron | 35.0% | |
! | GACCTATGGATTTTGTAGTA+AGG | - | chr1_4:72533590-72533609 | None:intergenic | 35.0% |
AAATTAGACTCAGGTGGTTT+GGG | - | chr1_4:72533626-72533645 | None:intergenic | 35.0% | |
AGATGGTAGAAATTAGACTC+AGG | - | chr1_4:72533635-72533654 | None:intergenic | 35.0% | |
TAGCACCTATAGTAGAAAGA+TGG | - | chr1_4:72533652-72533671 | None:intergenic | 35.0% | |
CGTCATCTATAGTAGAAAGA+TGG | - | chr1_4:72533677-72533696 | None:intergenic | 35.0% | |
!!! | GCTCCATTTGTTTTGAGAAA+TGG | + | chr1_4:72533863-72533882 | Msa0183570:intron | 35.0% |
TAACAACTCTCCTCATTATG+GGG | - | chr1_4:72533963-72533982 | None:intergenic | 35.0% | |
GTAACAACTCTCCTCATTAT+GGG | - | chr1_4:72533964-72533983 | None:intergenic | 35.0% | |
AACTGGAAGTAACATGCATT+TGG | - | chr1_4:72534421-72534440 | None:intergenic | 35.0% | |
CGCAAATAGATGGAAATCAT+AGG | - | chr1_4:72534587-72534606 | None:intergenic | 35.0% | |
TATATTATCGAGTGTGGAGA+TGG | + | chr1_4:72534849-72534868 | Msa0183570:three_prime_UTR | 35.0% | |
! | AGTGTGATGTGGGCTTTTTA+TGG | - | chr1_4:72529803-72529822 | None:intergenic | 40.0% |
! | TCGATTTTTCGCAGTGTGAT+GGG | - | chr1_4:72529832-72529851 | None:intergenic | 40.0% |
! | TTCGATTTTTCGCAGTGTGA+TGG | - | chr1_4:72529833-72529852 | None:intergenic | 40.0% |
! | AAGAGAAAAGGGTGTGAGAT+TGG | - | chr1_4:72529914-72529933 | None:intergenic | 40.0% |
ATTAGAACTGAGTATGACCG+TGG | + | chr1_4:72530176-72530195 | Msa0183570:intron | 40.0% | |
!! | GAGAAAAAGTGTTGACTCCA+CGG | - | chr1_4:72530196-72530215 | None:intergenic | 40.0% |
AACCTGAAACAAACGTCCTT+CGG | - | chr1_4:72530219-72530238 | None:intergenic | 40.0% | |
!! | GATTGGCTTGAAAACGAAAG+AGG | + | chr1_4:72530370-72530389 | Msa0183570:CDS | 40.0% |
GAATAGGTACATACCAGTAG+AGG | - | chr1_4:72530431-72530450 | None:intergenic | 40.0% | |
!! | TTTAGGGCAGATTTTCATCG+AGG | + | chr1_4:72530477-72530496 | Msa0183570:intron | 40.0% |
! | TTAGGGCAGATTTTCATCGA+GGG | + | chr1_4:72530478-72530497 | Msa0183570:intron | 40.0% |
GTTGTTGTCATGTGACTGTA+AGG | + | chr1_4:72530524-72530543 | Msa0183570:intron | 40.0% | |
ACAGCCTCTTGTGTAAAAAC+AGG | + | chr1_4:72530568-72530587 | Msa0183570:intron | 40.0% | |
CAGCCTCTTGTGTAAAAACA+GGG | + | chr1_4:72530569-72530588 | Msa0183570:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | + | chr1_4:72530600-72530619 | Msa0183570:intron | 40.0% | |
!!! | TGCCCTTTTTTGCCCTTTTT+AGG | + | chr1_4:72530671-72530690 | Msa0183570:intron | 40.0% |
!!! | GCCCTTTTTTGCCCTTTTTA+GGG | + | chr1_4:72530672-72530691 | Msa0183570:intron | 40.0% |
GCCCTAAAAAGGGCAAAAAA+GGG | - | chr1_4:72530676-72530695 | None:intergenic | 40.0% | |
TGCCCTAAAAAGGGCAAAAA+AGG | - | chr1_4:72530677-72530696 | None:intergenic | 40.0% | |
CGCTATGGTGAGGTTAATAA+TGG | + | chr1_4:72530848-72530867 | Msa0183570:intron | 40.0% | |
TAACAGTCAGTTTAGCAGTG+CGG | + | chr1_4:72530883-72530902 | Msa0183570:intron | 40.0% | |
GTGAAATGTCCACAAACTTG+CGG | + | chr1_4:72531096-72531115 | Msa0183570:intron | 40.0% | |
! | CATAATTTTCTCCACACTGC+TGG | - | chr1_4:72531310-72531329 | None:intergenic | 40.0% |
CAGCAGTGTGGAGAAAATTA+TGG | + | chr1_4:72531308-72531327 | Msa0183570:CDS | 40.0% | |
CAGAATCACAGGTTCTCTTA+TGG | + | chr1_4:72531512-72531531 | Msa0183570:intron | 40.0% | |
GTTGTAGACTCTACAGTCAT+CGG | - | chr1_4:72531542-72531561 | None:intergenic | 40.0% | |
! | CATGCAAGTTCACAGGTTTT+GGG | - | chr1_4:72531689-72531708 | None:intergenic | 40.0% |
! | TCATGCAAGTTCACAGGTTT+TGG | - | chr1_4:72531690-72531709 | None:intergenic | 40.0% |
CAGTGGCTTAATCCTTTCAT+AGG | - | chr1_4:72531866-72531885 | None:intergenic | 40.0% | |
! | TAAGCCACTGTCCTTTTGTA+AGG | + | chr1_4:72531876-72531895 | Msa0183570:intron | 40.0% |
AACACCTTACAAAAGGACAG+TGG | - | chr1_4:72531883-72531902 | None:intergenic | 40.0% | |
ATAAGGAGAGACACTCCAAA+TGG | - | chr1_4:72532051-72532070 | None:intergenic | 40.0% | |
AGAAGTAACCATGGCTTAGA+TGG | - | chr1_4:72532117-72532136 | None:intergenic | 40.0% | |
ACATGACTCAGAAGTAACCA+TGG | - | chr1_4:72532126-72532145 | None:intergenic | 40.0% | |
TGCAAAGAGTGGTTAATGAG+TGG | + | chr1_4:72532333-72532352 | Msa0183570:intron | 40.0% | |
! | AAGATGGCATGTTACTTCCA+AGG | - | chr1_4:72532438-72532457 | None:intergenic | 40.0% |
CACACATCAATGGTAAGAGT+AGG | - | chr1_4:72532617-72532636 | None:intergenic | 40.0% | |
ACACTGCATTGTTCAACTCT+CGG | + | chr1_4:72532672-72532691 | Msa0183570:intron | 40.0% | |
ACTAGTTCATGGTAGCAACT+TGG | + | chr1_4:72532732-72532751 | Msa0183570:intron | 40.0% | |
GAGTCTCAAATCCTAATTGG+GGG | - | chr1_4:72532806-72532825 | None:intergenic | 40.0% | |
TCAGCAGTCACTAGATGATA+CGG | + | chr1_4:72532946-72532965 | Msa0183570:intron | 40.0% | |
CAATGCAATGCAAAGGCTAT+TGG | + | chr1_4:72533083-72533102 | Msa0183570:CDS | 40.0% | |
!! | AATGCAAAGGCTATTGGTTC+AGG | + | chr1_4:72533089-72533108 | Msa0183570:CDS | 40.0% |
AGGTATCCATGTTCTTACAG+TGG | + | chr1_4:72533153-72533172 | Msa0183570:intron | 40.0% | |
GGTATCCATGTTCTTACAGT+GGG | + | chr1_4:72533154-72533173 | Msa0183570:intron | 40.0% | |
AACAACCCACTGTAAGAACA+TGG | - | chr1_4:72533162-72533181 | None:intergenic | 40.0% | |
TATTAGCTGGGATGGTAAAG+TGG | + | chr1_4:72533215-72533234 | Msa0183570:intron | 40.0% | |
! | ATCTCCATTTTCTCCACAGT+TGG | - | chr1_4:72533282-72533301 | None:intergenic | 40.0% |
! | GCATGCACTAAATTTGAGAC+TGG | - | chr1_4:72533307-72533326 | None:intergenic | 40.0% |
GTGCATGCAGATTCAAAACA+TGG | + | chr1_4:72533319-72533338 | Msa0183570:intron | 40.0% | |
CTTATCTCACTAAGTGGAGT+CGG | + | chr1_4:72533410-72533429 | Msa0183570:intron | 40.0% | |
GGACCTAGAGATTAATAAGC+TGG | - | chr1_4:72533488-72533507 | None:intergenic | 40.0% | |
AGTCAAATCACTAGAGGTAG+GGG | - | chr1_4:72533546-72533565 | None:intergenic | 40.0% | |
GAGTCAAATCACTAGAGGTA+GGG | - | chr1_4:72533547-72533566 | None:intergenic | 40.0% | |
AGTAAGGAGAGTAGATCAGA+TGG | - | chr1_4:72533574-72533593 | None:intergenic | 40.0% | |
GAAATTAGACTCAGGTGGTT+TGG | - | chr1_4:72533627-72533646 | None:intergenic | 40.0% | |
TGGTAGAAATTAGACTCAGG+TGG | - | chr1_4:72533632-72533651 | None:intergenic | 40.0% | |
ACGCAGAAAGGATCTTAAGA+GGG | - | chr1_4:72533716-72533735 | None:intergenic | 40.0% | |
GGTAACAACTCTCCTCATTA+TGG | - | chr1_4:72533965-72533984 | None:intergenic | 40.0% | |
TAATGAGGAGAGTTGTTACC+TGG | + | chr1_4:72533965-72533984 | Msa0183570:intron | 40.0% | |
GAGTTGTTACCTGGAATTCT+TGG | + | chr1_4:72533974-72533993 | Msa0183570:intron | 40.0% | |
AGCAAAGATCCAAGAATTCC+AGG | - | chr1_4:72533986-72534005 | None:intergenic | 40.0% | |
GAAGCAAGTTATGGAAGAGA+AGG | + | chr1_4:72534384-72534403 | Msa0183570:CDS | 40.0% | |
! | CGCGTTTGCAAAGCTTTTTA+TGG | + | chr1_4:72534875-72534894 | Msa0183570:three_prime_UTR | 40.0% |
TGGGTTTCAGAGTGTGATGT+GGG | - | chr1_4:72529813-72529832 | None:intergenic | 45.0% | |
ATGGGTTTCAGAGTGTGATG+TGG | - | chr1_4:72529814-72529833 | None:intergenic | 45.0% | |
AGAGAGAGAGAGAGTCCTTT+AGG | + | chr1_4:72529878-72529897 | Msa0183570:intron | 45.0% | |
! | ACTGCATAAAAATGGCGGAG+CGG | - | chr1_4:72529970-72529989 | None:intergenic | 45.0% |
!!! | GTCAACACTTTTTCTCCCGA+AGG | + | chr1_4:72530200-72530219 | Msa0183570:CDS | 45.0% |
ACCTGAAACAAACGTCCTTC+GGG | - | chr1_4:72530218-72530237 | None:intergenic | 45.0% | |
CTTGAAAACGAAAGAGGGTG+TGG | + | chr1_4:72530376-72530395 | Msa0183570:CDS | 45.0% | |
! | TAGGGCAGATTTTCATCGAG+GGG | + | chr1_4:72530479-72530498 | Msa0183570:intron | 45.0% |
! | TTTTCATCGAGGGGTAACCT+TGG | + | chr1_4:72530488-72530507 | Msa0183570:intron | 45.0% |
TCATGTGACTGTAAGGTCAC+AGG | + | chr1_4:72530531-72530550 | Msa0183570:intron | 45.0% | |
! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_4:72530564-72530583 | None:intergenic | 45.0% |
GCTGCGTACAATACACCAAA+TGG | + | chr1_4:72530596-72530615 | Msa0183570:intron | 45.0% | |
GCGTACAATACACCAAATGG+TGG | + | chr1_4:72530599-72530618 | Msa0183570:intron | 45.0% | |
! | TCATCCCTCTATCCCACTTT+TGG | + | chr1_4:72530955-72530974 | Msa0183570:intron | 45.0% |
!! | CATCCCTCTATCCCACTTTT+GGG | + | chr1_4:72530956-72530975 | Msa0183570:intron | 45.0% |
!! | ATCCCTCTATCCCACTTTTG+GGG | + | chr1_4:72530957-72530976 | Msa0183570:intron | 45.0% |
AACCCCAAAAGTGGGATAGA+GGG | - | chr1_4:72530962-72530981 | None:intergenic | 45.0% | |
GACTACGCACATGTTTGTCT+TGG | + | chr1_4:72531009-72531028 | Msa0183570:intron | 45.0% | |
TACGCACATGTTTGTCTTGG+TGG | + | chr1_4:72531012-72531031 | Msa0183570:intron | 45.0% | |
AAATGTCCACAAACTTGCGG+TGG | + | chr1_4:72531099-72531118 | Msa0183570:intron | 45.0% | |
AATGTCCACAAACTTGCGGT+GGG | + | chr1_4:72531100-72531119 | Msa0183570:intron | 45.0% | |
! | ACACGTTTGGATGTGCGTTT+TGG | - | chr1_4:72531131-72531150 | None:intergenic | 45.0% |
GGAAGGTGATGAAGAATCCA+TGG | + | chr1_4:72531595-72531614 | Msa0183570:CDS | 45.0% | |
AAGCGATCATGCAAGTTCAC+AGG | - | chr1_4:72531696-72531715 | None:intergenic | 45.0% | |
!! | AAAGAAGTGATGGGCGAAGA+TGG | - | chr1_4:72532454-72532473 | None:intergenic | 45.0% |
! | GGCACCTTTTGAACCATAAC+AGG | + | chr1_4:72532753-72532772 | Msa0183570:intron | 45.0% |
TTGGCATCTTACCCCCAATT+AGG | + | chr1_4:72532792-72532811 | Msa0183570:intron | 45.0% | |
! | CTGATCCTTCTGGCACATTT+TGG | + | chr1_4:72533060-72533079 | Msa0183570:CDS | 45.0% |
CATTGCCAAAATGTGCCAGA+AGG | - | chr1_4:72533068-72533087 | None:intergenic | 45.0% | |
!! | GCTATTGGTTCAGGATCAGA+AGG | + | chr1_4:72533098-72533117 | Msa0183570:CDS | 45.0% |
! | CATTTTCTCCACAGTTGGAG+AGG | - | chr1_4:72533277-72533296 | None:intergenic | 45.0% |
CTCTCCAACTGTGGAGAAAA+TGG | + | chr1_4:72533275-72533294 | Msa0183570:intron | 45.0% | |
CCACTTAGTGAGATAAGGCT+TGG | - | chr1_4:72533407-72533426 | None:intergenic | 45.0% | |
! | CCAAGCCTTATCTCACTAAG+TGG | + | chr1_4:72533404-72533423 | Msa0183570:intron | 45.0% |
CGACTCCACTTAGTGAGATA+AGG | - | chr1_4:72533412-72533431 | None:intergenic | 45.0% | |
GGAGTCAAATCACTAGAGGT+AGG | - | chr1_4:72533548-72533567 | None:intergenic | 45.0% | |
AGGAGAGTAGATCAGATGGA+GGG | - | chr1_4:72533570-72533589 | None:intergenic | 45.0% | |
AAGGAGAGTAGATCAGATGG+AGG | - | chr1_4:72533571-72533590 | None:intergenic | 45.0% | |
GCATGTAGAGAGAAGACCTA+TGG | - | chr1_4:72533604-72533623 | None:intergenic | 45.0% | |
CGCAGAAAGGATCTTAAGAG+GGG | - | chr1_4:72533715-72533734 | None:intergenic | 45.0% | |
GACGCAGAAAGGATCTTAAG+AGG | - | chr1_4:72533717-72533736 | None:intergenic | 45.0% | |
TTCTCCATTCTCTCCTCGAA+TGG | + | chr1_4:72533925-72533944 | Msa0183570:intron | 45.0% | |
GGCGAAACCCCAAAGAATTA+AGG | - | chr1_4:72534082-72534101 | None:intergenic | 45.0% | |
CTGGCAATGTCAACGTTGTT+GGG | - | chr1_4:72534507-72534526 | None:intergenic | 45.0% | |
CAACAACGTTGACATTGCCA+GGG | + | chr1_4:72534506-72534525 | Msa0183570:CDS | 45.0% | |
GGGGTATAAAGATGATACGC+TGG | - | chr1_4:72534537-72534556 | None:intergenic | 45.0% | |
TCATCTTTATACCCCGTCTG+AGG | + | chr1_4:72534542-72534561 | Msa0183570:CDS | 45.0% | |
!!! | TAATTTTTTTTTGTTAATTT+AGG | + | chr1_4:72530460-72530479 | Msa0183570:intron | 5.0% |
!!! | AATTTTTTTTTGTTAATTTA+GGG | + | chr1_4:72530461-72530480 | Msa0183570:intron | 5.0% |
! | TCTCTCTCTCGCTGGGTTTT+TGG | - | chr1_4:72529861-72529880 | None:intergenic | 50.0% |
! | CATAAAAATGGCGGAGCGGA+GGG | - | chr1_4:72529966-72529985 | None:intergenic | 50.0% |
TCCCGAAGGACGTTTGTTTC+AGG | + | chr1_4:72530214-72530233 | Msa0183570:CDS | 50.0% | |
CAGCTTGGATCAACTGCGAT+TGG | + | chr1_4:72530353-72530372 | Msa0183570:intron | 50.0% | |
GCGTATTACTTCGCCTCTAC+TGG | + | chr1_4:72530415-72530434 | Msa0183570:CDS | 50.0% | |
CAACTTTACCAGTTGCGCCA+AGG | - | chr1_4:72530508-72530527 | None:intergenic | 50.0% | |
AAGGTCACAGGTTCAAGTCC+TGG | + | chr1_4:72530543-72530562 | Msa0183570:intron | 50.0% | |
AAGGGCAAAAAAGGGCAACC+CGG | - | chr1_4:72530668-72530687 | None:intergenic | 50.0% | |
AAAATAGCGCCGCTATGGTG+AGG | + | chr1_4:72530838-72530857 | Msa0183570:intron | 50.0% | |
TCAGTTTAGCAGTGCGGAGT+GGG | + | chr1_4:72530889-72530908 | Msa0183570:intron | 50.0% | |
CAACCCCAAAAGTGGGATAG+AGG | - | chr1_4:72530963-72530982 | None:intergenic | 50.0% | |
GTCAATCCTGCATTGTGGTG+CGG | - | chr1_4:72530992-72531011 | None:intergenic | 50.0% | |
GCGTAGTCAATCCTGCATTG+TGG | - | chr1_4:72530997-72531016 | None:intergenic | 50.0% | |
GCACATGTTTGTCTTGGTGG+TGG | + | chr1_4:72531015-72531034 | Msa0183570:intron | 50.0% | |
ATGTCCACAAACTTGCGGTG+GGG | + | chr1_4:72531101-72531120 | Msa0183570:intron | 50.0% | |
! | CACATTGGCTGTGCAATGAG+TGG | + | chr1_4:72531342-72531361 | Msa0183570:CDS | 50.0% |
! | GCATGCACGAGTTGAAACTC+AGG | + | chr1_4:72531395-72531414 | Msa0183570:CDS | 50.0% |
CTTTGGCAGTCTCGACCATT+TGG | + | chr1_4:72532033-72532052 | Msa0183570:intron | 50.0% | |
! | GGAGTGTCTCTCCTTATTGC+TGG | + | chr1_4:72532054-72532073 | Msa0183570:CDS | 50.0% |
TCTCGTCATGGCCAGCAATA+AGG | - | chr1_4:72532068-72532087 | None:intergenic | 50.0% | |
ATTGCTGGCCATGACGAGAA+TGG | + | chr1_4:72532069-72532088 | Msa0183570:CDS | 50.0% | |
!! | CTGGACTATTGGTCTTGCTG+AGG | + | chr1_4:72533009-72533028 | Msa0183570:intron | 50.0% |
GAGGGGAGTCAAATCACTAG+AGG | - | chr1_4:72533552-72533571 | None:intergenic | 50.0% | |
GGAGAGTAGATCAGATGGAG+GGG | - | chr1_4:72533569-72533588 | None:intergenic | 50.0% | |
TATAGATGACGAACCCTCGC+TGG | + | chr1_4:72533686-72533705 | Msa0183570:intron | 50.0% | |
CTCTCCATTCGAGGAGAGAA+TGG | - | chr1_4:72533932-72533951 | None:intergenic | 50.0% | |
CATTCTCTCCTCGAATGGAG+AGG | + | chr1_4:72533930-72533949 | Msa0183570:intron | 50.0% | |
AGGATGCAGACCCCATAATG+AGG | + | chr1_4:72533950-72533969 | Msa0183570:intron | 50.0% | |
TCAGTAGGGGGACAAACAAC+TGG | - | chr1_4:72534438-72534457 | None:intergenic | 50.0% | |
CCTGGCAATGTCAACGTTGT+TGG | - | chr1_4:72534508-72534527 | None:intergenic | 50.0% | |
CCAACAACGTTGACATTGCC+AGG | + | chr1_4:72534505-72534524 | Msa0183570:CDS | 50.0% | |
TCTTTATACCCCGTCTGAGG+TGG | + | chr1_4:72534545-72534564 | Msa0183570:CDS | 50.0% | |
ATCACAGCTTCCACCTCAGA+CGG | - | chr1_4:72534558-72534577 | None:intergenic | 50.0% | |
CTCTCTCTCTCTCTCTCGCT+GGG | - | chr1_4:72529868-72529887 | None:intergenic | 55.0% | |
TCTCTCTCTCTCTCTCTCGC+TGG | - | chr1_4:72529869-72529888 | None:intergenic | 55.0% | |
GAGCGGAGGGTTGAGAAATC+GGG | - | chr1_4:72529953-72529972 | None:intergenic | 55.0% | |
GGAGCGGAGGGTTGAGAAAT+CGG | - | chr1_4:72529954-72529973 | None:intergenic | 55.0% | |
! | GCATAAAAATGGCGGAGCGG+AGG | - | chr1_4:72529967-72529986 | None:intergenic | 55.0% |
CTAAAGCTCCCGCATACGCA+GGG | - | chr1_4:72530641-72530660 | None:intergenic | 55.0% | |
ACTAAAGCTCCCGCATACGC+AGG | - | chr1_4:72530642-72530661 | None:intergenic | 55.0% | |
! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr1_4:72530646-72530665 | Msa0183570:intron | 55.0% |
AGCGCAAAATAGCGCCGCTA+TGG | + | chr1_4:72530833-72530852 | Msa0183570:intron | 55.0% | |
GTCAGTTTAGCAGTGCGGAG+TGG | + | chr1_4:72530888-72530907 | Msa0183570:intron | 55.0% | |
CAGTTTAGCAGTGCGGAGTG+GGG | + | chr1_4:72530890-72530909 | Msa0183570:intron | 55.0% | |
AGTTTAGCAGTGCGGAGTGG+GGG | + | chr1_4:72530891-72530910 | Msa0183570:intron | 55.0% | |
GAGCGGTCAACCCCAAAAGT+GGG | - | chr1_4:72530970-72530989 | None:intergenic | 55.0% | |
TGTCCACAAACTTGCGGTGG+GGG | + | chr1_4:72531102-72531121 | Msa0183570:intron | 55.0% | |
!! | TGTGACCTAGCCTTGCGCTT+TGG | + | chr1_4:72531572-72531591 | Msa0183570:CDS | 55.0% |
!! | GTGACCTAGCCTTGCGCTTT+GGG | + | chr1_4:72531573-72531592 | Msa0183570:CDS | 55.0% |
!! | TGACCTAGCCTTGCGCTTTG+GGG | + | chr1_4:72531574-72531593 | Msa0183570:CDS | 55.0% |
ATCACCTTCCCCAAAGCGCA+AGG | - | chr1_4:72531585-72531604 | None:intergenic | 55.0% | |
GGCTAGGTCCATTCTCGTCA+TGG | - | chr1_4:72532080-72532099 | None:intergenic | 55.0% | |
TTAAGAGGGGTGACCAGCGA+GGG | - | chr1_4:72533702-72533721 | None:intergenic | 55.0% | |
GTCTGCATCCTCTCCATTCG+AGG | - | chr1_4:72533941-72533960 | None:intergenic | 55.0% | |
ATGATACGCTGGAGCAACCC+TGG | - | chr1_4:72534526-72534545 | None:intergenic | 55.0% | |
TCACAGCTTCCACCTCAGAC+GGG | - | chr1_4:72534557-72534576 | None:intergenic | 55.0% | |
AGGGGTAACCTTGGCGCAAC+TGG | + | chr1_4:72530497-72530516 | Msa0183570:intron | 60.0% | |
ATACGCAGGGTCCAGGAAGG+GGG | - | chr1_4:72530628-72530647 | None:intergenic | 60.0% | |
CATACGCAGGGTCCAGGAAG+GGG | - | chr1_4:72530629-72530648 | None:intergenic | 60.0% | |
GCATACGCAGGGTCCAGGAA+GGG | - | chr1_4:72530630-72530649 | None:intergenic | 60.0% | |
CTTCCTGGACCCTGCGTATG+CGG | + | chr1_4:72530629-72530648 | Msa0183570:intron | 60.0% | |
TTCCTGGACCCTGCGTATGC+GGG | + | chr1_4:72530630-72530649 | Msa0183570:intron | 60.0% | |
! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr1_4:72530647-72530666 | Msa0183570:intron | 60.0% |
GGAGCGGTCAACCCCAAAAG+TGG | - | chr1_4:72530971-72530990 | None:intergenic | 60.0% | |
TCCTGCATTGTGGTGCGGAG+CGG | - | chr1_4:72530987-72531006 | None:intergenic | 60.0% | |
TCACCCCCACCGCAAGTTTG+TGG | - | chr1_4:72531108-72531127 | None:intergenic | 60.0% | |
CACTGCTGGGCTCCTGAAAG+TGG | - | chr1_4:72531296-72531315 | None:intergenic | 60.0% | |
CTTTCAGGAGCCCAGCAGTG+TGG | + | chr1_4:72531296-72531315 | Msa0183570:intron | 60.0% | |
CTTCCCCAAAGCGCAAGGCT+AGG | - | chr1_4:72531580-72531599 | None:intergenic | 60.0% | |
!! | CTAGCCTTGCGCTTTGGGGA+AGG | + | chr1_4:72531578-72531597 | Msa0183570:CDS | 60.0% |
GTCCAGCTCCTCTCCAACTG+TGG | + | chr1_4:72533266-72533285 | Msa0183570:intron | 60.0% | |
CTCCACAGTTGGAGAGGAGC+TGG | - | chr1_4:72533271-72533290 | None:intergenic | 60.0% | |
CTTAAGAGGGGTGACCAGCG+AGG | - | chr1_4:72533703-72533722 | None:intergenic | 60.0% | |
CACAGCTTCCACCTCAGACG+GGG | - | chr1_4:72534556-72534575 | None:intergenic | 60.0% | |
GGAAGGGGGGTCCCACCATT+TGG | - | chr1_4:72530614-72530633 | None:intergenic | 65.0% | |
! | AATGGTGGGACCCCCCTTCC+TGG | + | chr1_4:72530614-72530633 | Msa0183570:intron | 65.0% |
TACGCAGGGTCCAGGAAGGG+GGG | - | chr1_4:72530627-72530646 | None:intergenic | 65.0% | |
CGCATACGCAGGGTCCAGGA+AGG | - | chr1_4:72530631-72530650 | None:intergenic | 65.0% | |
ACCGCTCCGCACCACAATGC+AGG | + | chr1_4:72530983-72531002 | Msa0183570:intron | 65.0% | |
CTCCCGCATACGCAGGGTCC+AGG | - | chr1_4:72530635-72530654 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 72529782 | 72534984 | 72529782 | ID=Msa0183570;Name=Msa0183570 |
chr1_4 | mRNA | 72529782 | 72534984 | 72529782 | ID=Msa0183570-mRNA-1;Parent=Msa0183570;Name=Msa0183570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=122|1|1|1|0.8|0.72|11|394|237 |
chr1_4 | exon | 72529782 | 72529805 | 72529782 | ID=Msa0183570-mRNA-1:exon:24489;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72529826 | 72529876 | 72529826 | ID=Msa0183570-mRNA-1:exon:24490;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72529979 | 72530039 | 72529979 | ID=Msa0183570-mRNA-1:exon:24491;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72530181 | 72530262 | 72530181 | ID=Msa0183570-mRNA-1:exon:24492;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72530356 | 72530436 | 72530356 | ID=Msa0183570-mRNA-1:exon:24493;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72531303 | 72531416 | 72531303 | ID=Msa0183570-mRNA-1:exon:24494;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72531515 | 72531616 | 72531515 | ID=Msa0183570-mRNA-1:exon:24495;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72532042 | 72532100 | 72532042 | ID=Msa0183570-mRNA-1:exon:24496;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72533052 | 72533154 | 72533052 | ID=Msa0183570-mRNA-1:exon:24497;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72534340 | 72534405 | 72534340 | ID=Msa0183570-mRNA-1:exon:24498;Parent=Msa0183570-mRNA-1 |
chr1_4 | exon | 72534498 | 72534984 | 72534498 | ID=Msa0183570-mRNA-1:exon:24499;Parent=Msa0183570-mRNA-1 |
chr1_4 | five_prime_UTR | 72529782 | 72529805 | 72529782 | ID=Msa0183570-mRNA-1:five_prime_utr;Parent=Msa0183570-mRNA-1 |
chr1_4 | five_prime_UTR | 72529826 | 72529876 | 72529826 | ID=Msa0183570-mRNA-1:five_prime_utr;Parent=Msa0183570-mRNA-1 |
chr1_4 | five_prime_UTR | 72529979 | 72530025 | 72529979 | ID=Msa0183570-mRNA-1:five_prime_utr;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72530026 | 72530039 | 72530026 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72530181 | 72530262 | 72530181 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72530356 | 72530436 | 72530356 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72531303 | 72531416 | 72531303 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72531515 | 72531616 | 72531515 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72532042 | 72532100 | 72532042 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72533052 | 72533154 | 72533052 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72534340 | 72534405 | 72534340 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | CDS | 72534498 | 72534590 | 72534498 | ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1 |
chr1_4 | three_prime_UTR | 72534591 | 72534984 | 72534591 | ID=Msa0183570-mRNA-1:three_prime_utr;Parent=Msa0183570-mRNA-1 |
Gene Sequence |
Protein sequence |