AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183570 MtrunA17_Chr1g0210811 100.000 237 0 0 1 237 1 237 5.53e-179 490
Msa0183570 MtrunA17_Chr6g0453891 62.150 214 64 5 31 237 133 336 4.60e-75 230
Msa0183570 MtrunA17_Chr7g0243311 45.161 217 107 5 8 218 5 215 2.41e-58 185
Msa0183570 MtrunA17_Chr5g0401801 44.550 211 109 4 8 213 5 212 7.15e-55 175
Msa0183570 MtrunA17_Chr2g0283841 40.343 233 129 5 6 234 2 228 1.22e-50 165
Msa0183570 MtrunA17_Chr8g0371571 41.593 226 124 4 8 231 4 223 1.36e-50 165
Msa0183570 MtrunA17_Chr0c02g0489661 35.526 228 142 2 6 231 4 228 1.46e-47 157
Msa0183570 MtrunA17_Chr1g0155371 46.154 182 93 2 3 184 1 177 2.95e-47 157
Msa0183570 MtrunA17_Chr8g0360781 34.199 231 142 5 8 231 9 236 1.43e-40 139
Msa0183570 MtrunA17_Chr2g0308541 32.900 231 145 5 8 231 9 236 7.38e-39 135
Msa0183570 MtrunA17_Chr6g0459741 34.783 207 120 2 6 206 6 203 3.31e-38 133
Msa0183570 MtrunA17_Chr4g0004521 37.143 175 91 4 22 185 7 173 3.55e-26 102
Msa0183570 MtrunA17_Chr4g0027841 34.239 184 97 7 11 184 91 260 5.53e-18 81.3
Msa0183570 MtrunA17_Chr3g0116161 28.313 166 107 3 34 196 54 210 8.94e-15 71.6
Msa0183570 MtrunA17_Chr5g0394931 30.464 151 94 3 45 192 13 155 7.56e-13 65.5
Msa0183570 MtrunA17_Chr5g0399161 28.249 177 114 4 42 213 10 178 9.02e-13 65.1
Msa0183570 MtrunA17_Chr7g0228681 24.873 197 138 4 31 225 35 223 5.86e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183570 AT3G14290.1 97.468 237 6 0 1 237 1 237 1.15e-175 482
Msa0183570 AT1G53850.1 97.046 237 7 0 1 237 1 237 3.52e-175 481
Msa0183570 AT1G53850.2 97.046 237 7 0 1 237 1 237 3.52e-175 481
Msa0183570 AT3G22110.1 41.494 241 123 7 8 236 5 239 1.13e-56 181
Msa0183570 AT5G66140.1 43.000 200 108 3 8 205 4 199 6.01e-48 159
Msa0183570 AT1G16470.1 35.088 228 143 2 6 231 4 228 1.54e-47 157
Msa0183570 AT1G16470.2 35.088 228 143 2 6 231 4 228 1.54e-47 157
Msa0183570 AT3G51260.2 41.038 212 117 4 7 216 3 208 1.62e-47 157
Msa0183570 AT1G79210.1 34.188 234 149 2 6 237 4 234 1.66e-47 157
Msa0183570 AT1G79210.2 34.188 234 149 2 6 237 4 234 1.66e-47 157
Msa0183570 AT1G79210.3 34.188 234 149 2 6 237 4 234 1.66e-47 157
Msa0183570 AT3G51260.1 42.500 200 109 3 8 205 4 199 2.64e-47 157
Msa0183570 AT5G42790.1 39.506 243 125 4 3 234 1 232 1.98e-46 155
Msa0183570 AT1G47250.1 45.856 181 93 2 3 183 1 176 3.04e-46 155
Msa0183570 AT5G35590.1 35.498 231 139 5 8 231 9 236 2.85e-41 141
Msa0183570 AT2G27020.1 33.333 207 123 2 6 206 6 203 5.72e-38 133
Msa0183570 AT2G05840.2 34.434 212 132 4 8 215 9 217 2.10e-37 130
Msa0183570 AT2G05840.1 34.419 215 134 4 8 218 9 220 2.79e-37 131
Msa0183570 AT2G27020.2 33.333 207 123 2 6 206 108 305 8.48e-37 132
Msa0183570 AT4G15165.1 31.535 241 105 6 8 236 5 197 3.82e-35 124
Msa0183570 AT2G05840.3 35.263 190 118 3 8 195 9 195 6.10e-35 124
Msa0183570 AT3G26340.1 26.500 200 132 5 27 220 48 238 7.75e-15 72.4
Msa0183570 AT1G13060.1 25.654 191 129 4 34 220 57 238 1.07e-13 69.3
Msa0183570 AT4G14800.1 28.652 178 115 4 45 218 13 182 2.99e-12 63.9
Msa0183570 AT5G40580.1 25.616 203 141 3 31 231 36 230 3.91e-12 64.7
Msa0183570 AT5G40580.2 25.616 203 141 3 31 231 36 230 3.91e-12 64.7
Msa0183570 AT3G27430.2 26.108 203 140 3 31 231 36 230 7.44e-12 63.9
Msa0183570 AT4G14800.2 28.495 186 121 4 45 218 13 198 7.59e-12 63.2
Msa0183570 AT3G27430.1 26.108 203 140 3 31 231 36 230 9.28e-12 63.5

Find 64 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTTCTGGCACATTT+TGG 0.189061 1_4:+72533060 Msa0183570:CDS
TCCCGAAGGACGTTTGTTTC+AGG 0.228080 1_4:+72530214 Msa0183570:CDS
GTGACCTAGCCTTGCGCTTT+GGG 0.251856 1_4:+72531573 Msa0183570:CDS
ATATGCAATTGAAGCTATTA+AGG 0.287746 1_4:+72530241 Msa0183570:CDS
CTTTGGCAGTCTCGACCATT+TGG 0.312188 1_4:+72532033 Msa0183570:intron
TAAAATAGTATCACAGCGTT+TGG 0.327818 1_4:+72534738 Msa0183570:three_prime_UTR
AGACTGAATATCAGAAAATA+TGG 0.331191 1_4:-72534699 None:intergenic
GGAGTGTCTCTCCTTATTGC+TGG 0.335194 1_4:+72532054 Msa0183570:CDS
TGTGACCTAGCCTTGCGCTT+TGG 0.345737 1_4:+72531572 Msa0183570:CDS
CAGAATCACAGGTTCTCTTA+TGG 0.347192 1_4:+72531512 Msa0183570:intron
CAATGCAATGCAAAGGCTAT+TGG 0.347609 1_4:+72533083 Msa0183570:CDS
TCTCGTCATGGCCAGCAATA+AGG 0.348529 1_4:-72532065 None:intergenic
AATCAAATCACGCAAATAGA+TGG 0.363237 1_4:-72534594 None:intergenic
CAGCAGTGTGGAGAAAATTA+TGG 0.366170 1_4:+72531308 Msa0183570:CDS
ATCAATTCTGAAGCAAGTTA+TGG 0.388035 1_4:+72534375 Msa0183570:CDS
AACCTGAAACAAACGTCCTT+CGG 0.394934 1_4:-72530216 None:intergenic
TTGGTTTGATTTGATTTGAA+TGG 0.405827 1_4:-72530002 None:intergenic
CCAACAACGTTGACATTGCC+AGG 0.408754 1_4:+72534505 Msa0183570:CDS
ACCTGAAACAAACGTCCTTC+GGG 0.423347 1_4:-72530215 None:intergenic
CCTGGCAATGTCAACGTTGT+TGG 0.426746 1_4:-72534505 None:intergenic
CAGCTTGGATCAACTGCGAT+TGG 0.442542 1_4:+72530353 Msa0183570:intron
AAAATAGTATCACAGCGTTT+GGG 0.453345 1_4:+72534739 Msa0183570:three_prime_UTR
CTGGCAATGTCAACGTTGTT+GGG 0.454160 1_4:-72534504 None:intergenic
GCGTATTACTTCGCCTCTAC+TGG 0.457074 1_4:+72530415 Msa0183570:CDS
AGATATTACACTGATCCTTC+TGG 0.466365 1_4:+72533050 Msa0183570:intron
CGCAAATAGATGGAAATCAT+AGG 0.479822 1_4:-72534584 None:intergenic
AATGCAAAGGCTATTGGTTC+AGG 0.500036 1_4:+72533089 Msa0183570:CDS
CTAGCCTTGCGCTTTGGGGA+AGG 0.509941 1_4:+72531578 Msa0183570:CDS
ATTGCTGGCCATGACGAGAA+TGG 0.514622 1_4:+72532069 Msa0183570:CDS
TATATTATCGAGTGTGGAGA+TGG 0.521151 1_4:+72534849 Msa0183570:three_prime_UTR
GGAATATATACTTACAGGCT+AGG 0.527284 1_4:-72532093 None:intergenic
ATCACAGCTTCCACCTCAGA+CGG 0.535599 1_4:-72534555 None:intergenic
TCACAGCTTCCACCTCAGAC+GGG 0.536535 1_4:-72534554 None:intergenic
TCTTTATACCCCGTCTGAGG+TGG 0.544181 1_4:+72534545 Msa0183570:CDS
CTTGAAAACGAAAGAGGGTG+TGG 0.545014 1_4:+72530376 Msa0183570:CDS
ATGATACGCTGGAGCAACCC+TGG 0.548475 1_4:-72534523 None:intergenic
TGAATATCAGAAAATATGGT+AGG 0.556483 1_4:-72534695 None:intergenic
CTTCCCCAAAGCGCAAGGCT+AGG 0.558153 1_4:-72531577 None:intergenic
ATCTAGTATTGCATACAACT+TGG 0.561296 1_4:-72534669 None:intergenic
TAACCTTGTGAGAAACATGT+TGG 0.566164 1_4:-72530021 None:intergenic
GAAGCAAGTTATGGAAGAGA+AGG 0.568369 1_4:+72534384 Msa0183570:CDS
GGCTAGGTCCATTCTCGTCA+TGG 0.580425 1_4:-72532077 None:intergenic
ATAAGGAGAGACACTCCAAA+TGG 0.589626 1_4:-72532048 None:intergenic
TGACCTAGCCTTGCGCTTTG+GGG 0.590485 1_4:+72531574 Msa0183570:CDS
ATCACCTTCCCCAAAGCGCA+AGG 0.591699 1_4:-72531582 None:intergenic
GCTATTGGTTCAGGATCAGA+AGG 0.597231 1_4:+72533098 Msa0183570:CDS
GGAAGGTGATGAAGAATCCA+TGG 0.599188 1_4:+72531595 Msa0183570:CDS
CTAGTATATATTATCGAGTG+TGG 0.602194 1_4:+72534843 Msa0183570:three_prime_UTR
GTTGTAGACTCTACAGTCAT+CGG 0.602200 1_4:-72531539 None:intergenic
CACATTGGCTGTGCAATGAG+TGG 0.606594 1_4:+72531342 Msa0183570:CDS
GATTGGCTTGAAAACGAAAG+AGG 0.610207 1_4:+72530370 Msa0183570:CDS
CATTGCCAAAATGTGCCAGA+AGG 0.618837 1_4:-72533065 None:intergenic
AAACCAACATGTTTCTCACA+AGG 0.620638 1_4:+72530018 Msa0183570:exon
ATGGAAATTGATGATCACAT+TGG 0.621320 1_4:+72531327 Msa0183570:CDS
GAATAGGTACATACCAGTAG+AGG 0.625077 1_4:-72530428 None:intergenic
ATTGGCTTGAAAACGAAAGA+GGG 0.626167 1_4:+72530371 Msa0183570:CDS
TCATCTTTATACCCCGTCTG+AGG 0.634475 1_4:+72534542 Msa0183570:CDS
CAACAACGTTGACATTGCCA+GGG 0.635659 1_4:+72534506 Msa0183570:CDS
CACAGCTTCCACCTCAGACG+GGG 0.645540 1_4:-72534553 None:intergenic
GGGGTATAAAGATGATACGC+TGG 0.658506 1_4:-72534534 None:intergenic
GCATGCACGAGTTGAAACTC+AGG 0.662565 1_4:+72531395 Msa0183570:CDS
CTTTCAGGAGCCCAGCAGTG+TGG 0.675944 1_4:+72531296 Msa0183570:intron
ATTAGAACTGAGTATGACCG+TGG 0.689159 1_4:+72530176 Msa0183570:intron
TCTGCAAGAACAATTCAACA+AGG 0.713271 1_4:+72533133 Msa0183570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAATTTTTTTTTTTTTGT+TGG + chr1_4:72530326-72530345 Msa0183570:intron 10.0%
!! CAAAAAAAAATTACATAAAA+GGG - chr1_4:72530453-72530472 None:intergenic 10.0%
!! ACAAAAAAAAATTACATAAA+AGG - chr1_4:72530454-72530473 None:intergenic 10.0%
!!! TTTAGAATAAATTGAATTAT+GGG + chr1_4:72530775-72530794 Msa0183570:intron 10.0%
!!! TTTATAATTTAAAATGTTGT+TGG + chr1_4:72534206-72534225 Msa0183570:intron 10.0%
!! AATTCAATCATAAAAAAATT+AGG + chr1_4:72534900-72534919 Msa0183570:three_prime_UTR 10.0%
!! ATTCAATCATAAAAAAATTA+GGG + chr1_4:72534901-72534920 Msa0183570:three_prime_UTR 10.0%
!!! GTTTAGAATAAATTGAATTA+TGG + chr1_4:72530774-72530793 Msa0183570:intron 15.0%
!! TTAGAATAAATTGAATTATG+GGG + chr1_4:72530776-72530795 Msa0183570:intron 15.0%
!!! ATATTGATATTGATCTATTT+TGG + chr1_4:72531478-72531497 Msa0183570:intron 15.0%
!!! TTTTTTTATTAGTGTACAAA+TGG + chr1_4:72531901-72531920 Msa0183570:intron 15.0%
!!! TTTTTTATTAGTGTACAAAT+GGG + chr1_4:72531902-72531921 Msa0183570:intron 15.0%
!!! CTTTCTTATTATTTCTTTAA+TGG + chr1_4:72532553-72532572 Msa0183570:intron 15.0%
!! ATATCATTAAAATTATTAGC+TGG + chr1_4:72533202-72533221 Msa0183570:intron 15.0%
!! TATCATTAAAATTATTAGCT+GGG + chr1_4:72533203-72533222 Msa0183570:intron 15.0%
!! TATTAATTACCTTAATTCTT+TGG + chr1_4:72534070-72534089 Msa0183570:intron 15.0%
!! ATTAATTACCTTAATTCTTT+GGG + chr1_4:72534071-72534090 Msa0183570:intron 15.0%
!! AGTAAAAATATATAATAGCA+CGG - chr1_4:72534808-72534827 None:intergenic 15.0%
!! ACAAAAATCCTAATACATTT+GGG - chr1_4:72530122-72530141 None:intergenic 20.0%
!! AACAAAAATCCTAATACATT+TGG - chr1_4:72530123-72530142 None:intergenic 20.0%
!! ACCCTAATAATAATAATAGA+GGG - chr1_4:72530274-72530293 None:intergenic 20.0%
!! AACCCTAATAATAATAATAG+AGG - chr1_4:72530275-72530294 None:intergenic 20.0%
!! AAAATTACATAAAAGGGAAT+AGG - chr1_4:72530447-72530466 None:intergenic 20.0%
!! AATAAATATGACTATAAGCA+CGG - chr1_4:72531219-72531238 None:intergenic 20.0%
!! AAATTGTAATGTATGTTTCA+TGG - chr1_4:72531261-72531280 None:intergenic 20.0%
!!! CAACAATAGATTTTAAGTTT+AGG - chr1_4:72531830-72531849 None:intergenic 20.0%
!! CTAAACTTAAAATCTATTGT+TGG + chr1_4:72531828-72531847 Msa0183570:intron 20.0%
!! ATATTAAACATTCCTATGAA+AGG + chr1_4:72531851-72531870 Msa0183570:intron 20.0%
!! ATAAAAAAACACCTTACAAA+AGG - chr1_4:72531890-72531909 None:intergenic 20.0%
!!! TACCATTTATTTTTTCTCTT+TGG + chr1_4:72532016-72532035 Msa0183570:intron 20.0%
!! ATTAGTTAAATTACAGAGAA+AGG + chr1_4:72532257-72532276 Msa0183570:intron 20.0%
!! ATGTTAAAACATTTCTAAAC+CGG + chr1_4:72532356-72532375 Msa0183570:intron 20.0%
!! AACAAAAATGAGAAAATTAC+AGG - chr1_4:72532405-72532424 None:intergenic 20.0%
!! ATAAAAAAGAAAGAAGTGAT+GGG - chr1_4:72532463-72532482 None:intergenic 20.0%
!! AATAAAAAAGAAAGAAGTGA+TGG - chr1_4:72532464-72532483 None:intergenic 20.0%
!!! ATTTATTTCCTTTTTCATTC+TGG + chr1_4:72532990-72533009 Msa0183570:intron 20.0%
!! TGTTAAATAGATACACAAAA+TGG + chr1_4:72533900-72533919 Msa0183570:intron 20.0%
!! TTAATTACCTTAATTCTTTG+GGG + chr1_4:72534072-72534091 Msa0183570:intron 20.0%
!! AAGAGTTGAATATGATTTAT+AGG - chr1_4:72534103-72534122 None:intergenic 20.0%
!!! AGAATATCAATATGATTTGT+AGG - chr1_4:72534127-72534146 None:intergenic 20.0%
!! TCATAAAAAAATTAGGGTAA+AGG + chr1_4:72534907-72534926 Msa0183570:three_prime_UTR 20.0%
!! CATAAAAAAATTAGGGTAAA+GGG + chr1_4:72534908-72534927 Msa0183570:three_prime_UTR 20.0%
! ATTGGAAAAAAGTTACCTAA+AGG - chr1_4:72529896-72529915 None:intergenic 25.0%
!!! TTGGTTTGATTTGATTTGAA+TGG - chr1_4:72530005-72530024 None:intergenic 25.0%
!! TAATTTTCCCCAAATGTATT+AGG + chr1_4:72530111-72530130 Msa0183570:intron 25.0%
! CAAAAATCCTAATACATTTG+GGG - chr1_4:72530121-72530140 None:intergenic 25.0%
!!! GTATTAGGATTTTTGTTTCT+AGG + chr1_4:72530126-72530145 Msa0183570:intron 25.0%
! ATATGCAATTGAAGCTATTA+AGG + chr1_4:72530241-72530260 Msa0183570:CDS 25.0%
! TGCCCTCTATTATTATTATT+AGG + chr1_4:72530269-72530288 Msa0183570:intron 25.0%
! GCCCTCTATTATTATTATTA+GGG + chr1_4:72530270-72530289 Msa0183570:intron 25.0%
!!! GGTTTTTAACTATCTGTATT+CGG + chr1_4:72530291-72530310 Msa0183570:intron 25.0%
!!! GTTTTTAACTATCTGTATTC+GGG + chr1_4:72530292-72530311 Msa0183570:intron 25.0%
!! TCAGAATTACATCTAAAACT+GGG - chr1_4:72531158-72531177 None:intergenic 25.0%
!! TTCAGAATTACATCTAAAAC+TGG - chr1_4:72531159-72531178 None:intergenic 25.0%
! AATAGAATGTTGTATGTAGT+TGG + chr1_4:72531435-72531454 Msa0183570:intron 25.0%
!!! TTTATTTTTCACAGAATCAC+AGG + chr1_4:72531501-72531520 Msa0183570:intron 25.0%
! TGCATATTCTGAATGTTTAA+TGG + chr1_4:72531757-72531776 Msa0183570:intron 25.0%
! TGCCAAAGAGAAAAAATAAA+TGG - chr1_4:72532021-72532040 None:intergenic 25.0%
! TAGATGGAATATATACTTAC+AGG - chr1_4:72532101-72532120 None:intergenic 25.0%
!! AAAAGAAAGTGTAACATACA+AGG - chr1_4:72532231-72532250 None:intergenic 25.0%
!! TATGTTACACTTTCTTTTCT+GGG + chr1_4:72532233-72532252 Msa0183570:intron 25.0%
! AAATTCTTGTCAAATATGTC+CGG - chr1_4:72532378-72532397 None:intergenic 25.0%
!!! TTTCTCATTTTTGTTTCACT+TGG + chr1_4:72532410-72532429 Msa0183570:intron 25.0%
!!! TTCACAAATACTTTTGAGAA+AGG - chr1_4:72532494-72532513 None:intergenic 25.0%
! GAAATAATAAGAAAGAGTGA+AGG - chr1_4:72532548-72532567 None:intergenic 25.0%
!!! TATTTTGATTTTGTAGGATC+AGG + chr1_4:72532913-72532932 Msa0183570:intron 25.0%
! ATTAAAATTATTAGCTGGGA+TGG + chr1_4:72533207-72533226 Msa0183570:intron 25.0%
!! TGTTATTTGCAACAGTATTA+AGG - chr1_4:72534045-72534064 None:intergenic 25.0%
! AGACAAAAATATACAAGAGA+TGG - chr1_4:72534161-72534180 None:intergenic 25.0%
!!! ATCTCTTGTATATTTTTGTC+TGG + chr1_4:72534160-72534179 Msa0183570:intron 25.0%
! TTGCTTAAAGATTATCTTTC+AGG + chr1_4:72534255-72534274 Msa0183570:intron 25.0%
!! ATTGATTTATTATGTTGTGC+AGG + chr1_4:72534318-72534337 Msa0183570:intron 25.0%
! TTAGAATATATTCTCAGTAG+GGG - chr1_4:72534451-72534470 None:intergenic 25.0%
! GTTAGAATATATTCTCAGTA+GGG - chr1_4:72534452-72534471 None:intergenic 25.0%
! AGTTAGAATATATTCTCAGT+AGG - chr1_4:72534453-72534472 None:intergenic 25.0%
! TGAATATCAGAAAATATGGT+AGG - chr1_4:72534698-72534717 None:intergenic 25.0%
! AGACTGAATATCAGAAAATA+TGG - chr1_4:72534702-72534721 None:intergenic 25.0%
AGAAGAAGAAGAAGAGAAAA+GGG - chr1_4:72529925-72529944 None:intergenic 30.0%
AAGAAGAAGAAGAAGAGAAA+AGG - chr1_4:72529926-72529945 None:intergenic 30.0%
GATAGATCACTGCATAAAAA+TGG - chr1_4:72529978-72529997 None:intergenic 30.0%
TAAAAGAGTGAGAGAGAAAA+GGG - chr1_4:72530049-72530068 None:intergenic 30.0%
ATAAAAGAGTGAGAGAGAAA+AGG - chr1_4:72530050-72530069 None:intergenic 30.0%
! TTTTCTCTCTCACTCTTTTA+TGG + chr1_4:72530049-72530068 Msa0183570:intron 30.0%
!!! TTTTTTGTTGGATTTCAGCT+TGG + chr1_4:72530338-72530357 Msa0183570:intron 30.0%
ATGAAAATCTGCCCTAAAAA+GGG - chr1_4:72530686-72530705 None:intergenic 30.0%
! CACGCATATTTTTCTTACTT+GGG - chr1_4:72530723-72530742 None:intergenic 30.0%
AATTGAATTATGGGGATATC+TGG + chr1_4:72530784-72530803 Msa0183570:intron 30.0%
! ACTGCTGTTTGATAATTTGT+TGG - chr1_4:72530936-72530955 None:intergenic 30.0%
TGTGTTAAAATTCCACTTTC+AGG + chr1_4:72531281-72531300 Msa0183570:intron 30.0%
! ATGGAAATTGATGATCACAT+TGG + chr1_4:72531327-72531346 Msa0183570:CDS 30.0%
AGCTAAGAAGTTATATACCA+TGG - chr1_4:72531615-72531634 None:intergenic 30.0%
TCGTAAAAGATACTTACTAG+TGG + chr1_4:72531957-72531976 Msa0183570:intron 30.0%
TATATATTCCATCTAAGCCA+TGG + chr1_4:72532106-72532125 Msa0183570:intron 30.0%
AACACAGAAAATGAGTCAAA+AGG - chr1_4:72532160-72532179 None:intergenic 30.0%
! GTATGTTACACTTTCTTTTC+TGG + chr1_4:72532232-72532251 Msa0183570:intron 30.0%
! ATGTTACACTTTCTTTTCTG+GGG + chr1_4:72532234-72532253 Msa0183570:intron 30.0%
! GAGAATGATGCTATAGTTTT+AGG + chr1_4:72532582-72532601 Msa0183570:intron 30.0%
! GTAAATACATCTTTTCTGTG+CGG + chr1_4:72532638-72532657 Msa0183570:intron 30.0%
TTCTTGTTCAAACTAGTTCA+TGG + chr1_4:72532721-72532740 Msa0183570:intron 30.0%
TTGAGTCTCAAATCCTAATT+GGG - chr1_4:72532808-72532827 None:intergenic 30.0%
ATTGAGTCTCAAATCCTAAT+TGG - chr1_4:72532809-72532828 None:intergenic 30.0%
!! TGCATTAATTTGTCTGTGAT+GGG - chr1_4:72532855-72532874 None:intergenic 30.0%
AGAAAATAATTGCACAGCAT+GGG + chr1_4:72532890-72532909 Msa0183570:intron 30.0%
!!! CATGGGTATTTTGATTTTGT+AGG + chr1_4:72532907-72532926 Msa0183570:intron 30.0%
!! GGTTTTTCAATAGAACATCA+TGG - chr1_4:72533455-72533474 None:intergenic 30.0%
CTATAAGGAGACTATTAAGA+AGG - chr1_4:72533509-72533528 None:intergenic 30.0%
! AGTCTCCTTATAGTTTTTCT+AGG + chr1_4:72533516-72533535 Msa0183570:intron 30.0%
GAAGACCTAGAAAAACTATA+AGG - chr1_4:72533524-72533543 None:intergenic 30.0%
TTCTACCATCTTTCTACTAT+AGG + chr1_4:72533644-72533663 Msa0183570:intron 30.0%
TCATCTATAGTAGAAAGATG+GGG - chr1_4:72533675-72533694 None:intergenic 30.0%
GTCATCTATAGTAGAAAGAT+GGG - chr1_4:72533676-72533695 None:intergenic 30.0%
! AAATTCTTTTAGACGCAGAA+AGG - chr1_4:72533728-72533747 None:intergenic 30.0%
TTTCTGCGTCTAAAAGAATT+TGG + chr1_4:72533727-72533746 Msa0183570:intron 30.0%
TTCTGCGTCTAAAAGAATTT+GGG + chr1_4:72533728-72533747 Msa0183570:intron 30.0%
AAAAGAATTTGGGCTCTATT+TGG + chr1_4:72533738-72533757 Msa0183570:intron 30.0%
TCTCCATTTCTCAAAACAAA+TGG - chr1_4:72533869-72533888 None:intergenic 30.0%
AAGATTATCTTTCAGGATAG+AGG + chr1_4:72534262-72534281 Msa0183570:intron 30.0%
GACATGAAAACAAGTGAATT+TGG + chr1_4:72534294-72534313 Msa0183570:intron 30.0%
!! ATCAATTCTGAAGCAAGTTA+TGG + chr1_4:72534375-72534394 Msa0183570:CDS 30.0%
TAGAATATATTCTCAGTAGG+GGG - chr1_4:72534450-72534469 None:intergenic 30.0%
TTCTTCTGTACTTTCACATT+AGG + chr1_4:72534476-72534495 Msa0183570:intron 30.0%
AATCAAATCACGCAAATAGA+TGG - chr1_4:72534597-72534616 None:intergenic 30.0%
ATCTAGTATTGCATACAACT+TGG - chr1_4:72534672-72534691 None:intergenic 30.0%
TAAAATAGTATCACAGCGTT+TGG + chr1_4:72534738-72534757 Msa0183570:three_prime_UTR 30.0%
AAAATAGTATCACAGCGTTT+GGG + chr1_4:72534739-72534758 Msa0183570:three_prime_UTR 30.0%
CTAGTATATATTATCGAGTG+TGG + chr1_4:72534843-72534862 Msa0183570:three_prime_UTR 30.0%
AGATCACTGCATAAAAATGG+CGG - chr1_4:72529975-72529994 None:intergenic 35.0%
AAACCAACATGTTTCTCACA+AGG + chr1_4:72530018-72530037 Msa0183570:exon 35.0%
TAACCTTGTGAGAAACATGT+TGG - chr1_4:72530024-72530043 None:intergenic 35.0%
TTAACTATCTGTATTCGGGT+TGG + chr1_4:72530296-72530315 Msa0183570:intron 35.0%
!! ATTGGCTTGAAAACGAAAGA+GGG + chr1_4:72530371-72530390 Msa0183570:CDS 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr1_4:72530575-72530594 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr1_4:72530574-72530593 Msa0183570:intron 35.0%
GATGAAAATCTGCCCTAAAA+AGG - chr1_4:72530687-72530706 None:intergenic 35.0%
! GCACGCATATTTTTCTTACT+TGG - chr1_4:72530724-72530743 None:intergenic 35.0%
CATTATTAACCTCACCATAG+CGG - chr1_4:72530850-72530869 None:intergenic 35.0%
AAGTTTGTGGACATTTCACA+TGG - chr1_4:72531095-72531114 None:intergenic 35.0%
AAAACTGGGTATAACACGTT+TGG - chr1_4:72531144-72531163 None:intergenic 35.0%
! ATAATTTTCTCCACACTGCT+GGG - chr1_4:72531309-72531328 None:intergenic 35.0%
TGCTTACAGTGCTTTCTTTA+AGG + chr1_4:72531663-72531682 Msa0183570:intron 35.0%
TTCAGAATATGCAACACACA+AGG - chr1_4:72531750-72531769 None:intergenic 35.0%
!! ATACTTACTAGTGGTGTTGT+TGG + chr1_4:72531966-72531985 Msa0183570:intron 35.0%
GGAATATATACTTACAGGCT+AGG - chr1_4:72532096-72532115 None:intergenic 35.0%
GTGTAACATACAAGGAACAA+CGG - chr1_4:72532223-72532242 None:intergenic 35.0%
AATTACAGAGAAAGGACATG+TGG + chr1_4:72532265-72532284 Msa0183570:intron 35.0%
! AAGAACAGTCGCAATTTTTC+TGG + chr1_4:72532301-72532320 Msa0183570:intron 35.0%
GGATATACATATGCAAAGAG+TGG + chr1_4:72532322-72532341 Msa0183570:intron 35.0%
!! TTTTGTTTCACTTGGTTCCT+TGG + chr1_4:72532418-72532437 Msa0183570:intron 35.0%
TGTATTTACGCACACATCAA+TGG - chr1_4:72532627-72532646 None:intergenic 35.0%
GTTTCCTGTTATGGTTCAAA+AGG - chr1_4:72532760-72532779 None:intergenic 35.0%
CCACTAAATGTTTCCTGTTA+TGG - chr1_4:72532769-72532788 None:intergenic 35.0%
CCATAACAGGAAACATTTAG+TGG + chr1_4:72532766-72532785 Msa0183570:intron 35.0%
AGGAAACATTTAGTGGTAGT+TGG + chr1_4:72532773-72532792 Msa0183570:intron 35.0%
TGAGTCTCAAATCCTAATTG+GGG - chr1_4:72532807-72532826 None:intergenic 35.0%
! TAATTTGTCTGTGATGGGAA+TGG - chr1_4:72532850-72532869 None:intergenic 35.0%
!! CTGCATTAATTTGTCTGTGA+TGG - chr1_4:72532856-72532875 None:intergenic 35.0%
CAGAAAATAATTGCACAGCA+TGG + chr1_4:72532889-72532908 Msa0183570:intron 35.0%
CCAATAGTCCAGAATGAAAA+AGG - chr1_4:72533001-72533020 None:intergenic 35.0%
!! CCTTTTTCATTCTGGACTAT+TGG + chr1_4:72532998-72533017 Msa0183570:intron 35.0%
AGATATTACACTGATCCTTC+TGG + chr1_4:72533050-72533069 Msa0183570:intron 35.0%
!! ATTTTGGCAATGCAATGCAA+AGG + chr1_4:72533076-72533095 Msa0183570:CDS 35.0%
TCTGCAAGAACAATTCAACA+AGG + chr1_4:72533133-72533152 Msa0183570:CDS 35.0%
TAATAAGCTGGAGAAAGACA+TGG - chr1_4:72533476-72533495 None:intergenic 35.0%
TCTCCAGCTTATTAATCTCT+AGG + chr1_4:72533482-72533501 Msa0183570:intron 35.0%
CTCCTTACTACAAAATCCAT+AGG + chr1_4:72533585-72533604 Msa0183570:intron 35.0%
! GACCTATGGATTTTGTAGTA+AGG - chr1_4:72533590-72533609 None:intergenic 35.0%
AAATTAGACTCAGGTGGTTT+GGG - chr1_4:72533626-72533645 None:intergenic 35.0%
AGATGGTAGAAATTAGACTC+AGG - chr1_4:72533635-72533654 None:intergenic 35.0%
TAGCACCTATAGTAGAAAGA+TGG - chr1_4:72533652-72533671 None:intergenic 35.0%
CGTCATCTATAGTAGAAAGA+TGG - chr1_4:72533677-72533696 None:intergenic 35.0%
!!! GCTCCATTTGTTTTGAGAAA+TGG + chr1_4:72533863-72533882 Msa0183570:intron 35.0%
TAACAACTCTCCTCATTATG+GGG - chr1_4:72533963-72533982 None:intergenic 35.0%
GTAACAACTCTCCTCATTAT+GGG - chr1_4:72533964-72533983 None:intergenic 35.0%
AACTGGAAGTAACATGCATT+TGG - chr1_4:72534421-72534440 None:intergenic 35.0%
CGCAAATAGATGGAAATCAT+AGG - chr1_4:72534587-72534606 None:intergenic 35.0%
TATATTATCGAGTGTGGAGA+TGG + chr1_4:72534849-72534868 Msa0183570:three_prime_UTR 35.0%
! AGTGTGATGTGGGCTTTTTA+TGG - chr1_4:72529803-72529822 None:intergenic 40.0%
! TCGATTTTTCGCAGTGTGAT+GGG - chr1_4:72529832-72529851 None:intergenic 40.0%
! TTCGATTTTTCGCAGTGTGA+TGG - chr1_4:72529833-72529852 None:intergenic 40.0%
! AAGAGAAAAGGGTGTGAGAT+TGG - chr1_4:72529914-72529933 None:intergenic 40.0%
ATTAGAACTGAGTATGACCG+TGG + chr1_4:72530176-72530195 Msa0183570:intron 40.0%
!! GAGAAAAAGTGTTGACTCCA+CGG - chr1_4:72530196-72530215 None:intergenic 40.0%
AACCTGAAACAAACGTCCTT+CGG - chr1_4:72530219-72530238 None:intergenic 40.0%
!! GATTGGCTTGAAAACGAAAG+AGG + chr1_4:72530370-72530389 Msa0183570:CDS 40.0%
GAATAGGTACATACCAGTAG+AGG - chr1_4:72530431-72530450 None:intergenic 40.0%
!! TTTAGGGCAGATTTTCATCG+AGG + chr1_4:72530477-72530496 Msa0183570:intron 40.0%
! TTAGGGCAGATTTTCATCGA+GGG + chr1_4:72530478-72530497 Msa0183570:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr1_4:72530524-72530543 Msa0183570:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr1_4:72530568-72530587 Msa0183570:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr1_4:72530569-72530588 Msa0183570:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_4:72530600-72530619 Msa0183570:intron 40.0%
!!! TGCCCTTTTTTGCCCTTTTT+AGG + chr1_4:72530671-72530690 Msa0183570:intron 40.0%
!!! GCCCTTTTTTGCCCTTTTTA+GGG + chr1_4:72530672-72530691 Msa0183570:intron 40.0%
GCCCTAAAAAGGGCAAAAAA+GGG - chr1_4:72530676-72530695 None:intergenic 40.0%
TGCCCTAAAAAGGGCAAAAA+AGG - chr1_4:72530677-72530696 None:intergenic 40.0%
CGCTATGGTGAGGTTAATAA+TGG + chr1_4:72530848-72530867 Msa0183570:intron 40.0%
TAACAGTCAGTTTAGCAGTG+CGG + chr1_4:72530883-72530902 Msa0183570:intron 40.0%
GTGAAATGTCCACAAACTTG+CGG + chr1_4:72531096-72531115 Msa0183570:intron 40.0%
! CATAATTTTCTCCACACTGC+TGG - chr1_4:72531310-72531329 None:intergenic 40.0%
CAGCAGTGTGGAGAAAATTA+TGG + chr1_4:72531308-72531327 Msa0183570:CDS 40.0%
CAGAATCACAGGTTCTCTTA+TGG + chr1_4:72531512-72531531 Msa0183570:intron 40.0%
GTTGTAGACTCTACAGTCAT+CGG - chr1_4:72531542-72531561 None:intergenic 40.0%
! CATGCAAGTTCACAGGTTTT+GGG - chr1_4:72531689-72531708 None:intergenic 40.0%
! TCATGCAAGTTCACAGGTTT+TGG - chr1_4:72531690-72531709 None:intergenic 40.0%
CAGTGGCTTAATCCTTTCAT+AGG - chr1_4:72531866-72531885 None:intergenic 40.0%
! TAAGCCACTGTCCTTTTGTA+AGG + chr1_4:72531876-72531895 Msa0183570:intron 40.0%
AACACCTTACAAAAGGACAG+TGG - chr1_4:72531883-72531902 None:intergenic 40.0%
ATAAGGAGAGACACTCCAAA+TGG - chr1_4:72532051-72532070 None:intergenic 40.0%
AGAAGTAACCATGGCTTAGA+TGG - chr1_4:72532117-72532136 None:intergenic 40.0%
ACATGACTCAGAAGTAACCA+TGG - chr1_4:72532126-72532145 None:intergenic 40.0%
TGCAAAGAGTGGTTAATGAG+TGG + chr1_4:72532333-72532352 Msa0183570:intron 40.0%
! AAGATGGCATGTTACTTCCA+AGG - chr1_4:72532438-72532457 None:intergenic 40.0%
CACACATCAATGGTAAGAGT+AGG - chr1_4:72532617-72532636 None:intergenic 40.0%
ACACTGCATTGTTCAACTCT+CGG + chr1_4:72532672-72532691 Msa0183570:intron 40.0%
ACTAGTTCATGGTAGCAACT+TGG + chr1_4:72532732-72532751 Msa0183570:intron 40.0%
GAGTCTCAAATCCTAATTGG+GGG - chr1_4:72532806-72532825 None:intergenic 40.0%
TCAGCAGTCACTAGATGATA+CGG + chr1_4:72532946-72532965 Msa0183570:intron 40.0%
CAATGCAATGCAAAGGCTAT+TGG + chr1_4:72533083-72533102 Msa0183570:CDS 40.0%
!! AATGCAAAGGCTATTGGTTC+AGG + chr1_4:72533089-72533108 Msa0183570:CDS 40.0%
AGGTATCCATGTTCTTACAG+TGG + chr1_4:72533153-72533172 Msa0183570:intron 40.0%
GGTATCCATGTTCTTACAGT+GGG + chr1_4:72533154-72533173 Msa0183570:intron 40.0%
AACAACCCACTGTAAGAACA+TGG - chr1_4:72533162-72533181 None:intergenic 40.0%
TATTAGCTGGGATGGTAAAG+TGG + chr1_4:72533215-72533234 Msa0183570:intron 40.0%
! ATCTCCATTTTCTCCACAGT+TGG - chr1_4:72533282-72533301 None:intergenic 40.0%
! GCATGCACTAAATTTGAGAC+TGG - chr1_4:72533307-72533326 None:intergenic 40.0%
GTGCATGCAGATTCAAAACA+TGG + chr1_4:72533319-72533338 Msa0183570:intron 40.0%
CTTATCTCACTAAGTGGAGT+CGG + chr1_4:72533410-72533429 Msa0183570:intron 40.0%
GGACCTAGAGATTAATAAGC+TGG - chr1_4:72533488-72533507 None:intergenic 40.0%
AGTCAAATCACTAGAGGTAG+GGG - chr1_4:72533546-72533565 None:intergenic 40.0%
GAGTCAAATCACTAGAGGTA+GGG - chr1_4:72533547-72533566 None:intergenic 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr1_4:72533574-72533593 None:intergenic 40.0%
GAAATTAGACTCAGGTGGTT+TGG - chr1_4:72533627-72533646 None:intergenic 40.0%
TGGTAGAAATTAGACTCAGG+TGG - chr1_4:72533632-72533651 None:intergenic 40.0%
ACGCAGAAAGGATCTTAAGA+GGG - chr1_4:72533716-72533735 None:intergenic 40.0%
GGTAACAACTCTCCTCATTA+TGG - chr1_4:72533965-72533984 None:intergenic 40.0%
TAATGAGGAGAGTTGTTACC+TGG + chr1_4:72533965-72533984 Msa0183570:intron 40.0%
GAGTTGTTACCTGGAATTCT+TGG + chr1_4:72533974-72533993 Msa0183570:intron 40.0%
AGCAAAGATCCAAGAATTCC+AGG - chr1_4:72533986-72534005 None:intergenic 40.0%
GAAGCAAGTTATGGAAGAGA+AGG + chr1_4:72534384-72534403 Msa0183570:CDS 40.0%
! CGCGTTTGCAAAGCTTTTTA+TGG + chr1_4:72534875-72534894 Msa0183570:three_prime_UTR 40.0%
TGGGTTTCAGAGTGTGATGT+GGG - chr1_4:72529813-72529832 None:intergenic 45.0%
ATGGGTTTCAGAGTGTGATG+TGG - chr1_4:72529814-72529833 None:intergenic 45.0%
AGAGAGAGAGAGAGTCCTTT+AGG + chr1_4:72529878-72529897 Msa0183570:intron 45.0%
! ACTGCATAAAAATGGCGGAG+CGG - chr1_4:72529970-72529989 None:intergenic 45.0%
!!! GTCAACACTTTTTCTCCCGA+AGG + chr1_4:72530200-72530219 Msa0183570:CDS 45.0%
ACCTGAAACAAACGTCCTTC+GGG - chr1_4:72530218-72530237 None:intergenic 45.0%
CTTGAAAACGAAAGAGGGTG+TGG + chr1_4:72530376-72530395 Msa0183570:CDS 45.0%
! TAGGGCAGATTTTCATCGAG+GGG + chr1_4:72530479-72530498 Msa0183570:intron 45.0%
! TTTTCATCGAGGGGTAACCT+TGG + chr1_4:72530488-72530507 Msa0183570:intron 45.0%
TCATGTGACTGTAAGGTCAC+AGG + chr1_4:72530531-72530550 Msa0183570:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr1_4:72530564-72530583 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_4:72530596-72530615 Msa0183570:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_4:72530599-72530618 Msa0183570:intron 45.0%
! TCATCCCTCTATCCCACTTT+TGG + chr1_4:72530955-72530974 Msa0183570:intron 45.0%
!! CATCCCTCTATCCCACTTTT+GGG + chr1_4:72530956-72530975 Msa0183570:intron 45.0%
!! ATCCCTCTATCCCACTTTTG+GGG + chr1_4:72530957-72530976 Msa0183570:intron 45.0%
AACCCCAAAAGTGGGATAGA+GGG - chr1_4:72530962-72530981 None:intergenic 45.0%
GACTACGCACATGTTTGTCT+TGG + chr1_4:72531009-72531028 Msa0183570:intron 45.0%
TACGCACATGTTTGTCTTGG+TGG + chr1_4:72531012-72531031 Msa0183570:intron 45.0%
AAATGTCCACAAACTTGCGG+TGG + chr1_4:72531099-72531118 Msa0183570:intron 45.0%
AATGTCCACAAACTTGCGGT+GGG + chr1_4:72531100-72531119 Msa0183570:intron 45.0%
! ACACGTTTGGATGTGCGTTT+TGG - chr1_4:72531131-72531150 None:intergenic 45.0%
GGAAGGTGATGAAGAATCCA+TGG + chr1_4:72531595-72531614 Msa0183570:CDS 45.0%
AAGCGATCATGCAAGTTCAC+AGG - chr1_4:72531696-72531715 None:intergenic 45.0%
!! AAAGAAGTGATGGGCGAAGA+TGG - chr1_4:72532454-72532473 None:intergenic 45.0%
! GGCACCTTTTGAACCATAAC+AGG + chr1_4:72532753-72532772 Msa0183570:intron 45.0%
TTGGCATCTTACCCCCAATT+AGG + chr1_4:72532792-72532811 Msa0183570:intron 45.0%
! CTGATCCTTCTGGCACATTT+TGG + chr1_4:72533060-72533079 Msa0183570:CDS 45.0%
CATTGCCAAAATGTGCCAGA+AGG - chr1_4:72533068-72533087 None:intergenic 45.0%
!! GCTATTGGTTCAGGATCAGA+AGG + chr1_4:72533098-72533117 Msa0183570:CDS 45.0%
! CATTTTCTCCACAGTTGGAG+AGG - chr1_4:72533277-72533296 None:intergenic 45.0%
CTCTCCAACTGTGGAGAAAA+TGG + chr1_4:72533275-72533294 Msa0183570:intron 45.0%
CCACTTAGTGAGATAAGGCT+TGG - chr1_4:72533407-72533426 None:intergenic 45.0%
! CCAAGCCTTATCTCACTAAG+TGG + chr1_4:72533404-72533423 Msa0183570:intron 45.0%
CGACTCCACTTAGTGAGATA+AGG - chr1_4:72533412-72533431 None:intergenic 45.0%
GGAGTCAAATCACTAGAGGT+AGG - chr1_4:72533548-72533567 None:intergenic 45.0%
AGGAGAGTAGATCAGATGGA+GGG - chr1_4:72533570-72533589 None:intergenic 45.0%
AAGGAGAGTAGATCAGATGG+AGG - chr1_4:72533571-72533590 None:intergenic 45.0%
GCATGTAGAGAGAAGACCTA+TGG - chr1_4:72533604-72533623 None:intergenic 45.0%
CGCAGAAAGGATCTTAAGAG+GGG - chr1_4:72533715-72533734 None:intergenic 45.0%
GACGCAGAAAGGATCTTAAG+AGG - chr1_4:72533717-72533736 None:intergenic 45.0%
TTCTCCATTCTCTCCTCGAA+TGG + chr1_4:72533925-72533944 Msa0183570:intron 45.0%
GGCGAAACCCCAAAGAATTA+AGG - chr1_4:72534082-72534101 None:intergenic 45.0%
CTGGCAATGTCAACGTTGTT+GGG - chr1_4:72534507-72534526 None:intergenic 45.0%
CAACAACGTTGACATTGCCA+GGG + chr1_4:72534506-72534525 Msa0183570:CDS 45.0%
GGGGTATAAAGATGATACGC+TGG - chr1_4:72534537-72534556 None:intergenic 45.0%
TCATCTTTATACCCCGTCTG+AGG + chr1_4:72534542-72534561 Msa0183570:CDS 45.0%
!!! TAATTTTTTTTTGTTAATTT+AGG + chr1_4:72530460-72530479 Msa0183570:intron 5.0%
!!! AATTTTTTTTTGTTAATTTA+GGG + chr1_4:72530461-72530480 Msa0183570:intron 5.0%
! TCTCTCTCTCGCTGGGTTTT+TGG - chr1_4:72529861-72529880 None:intergenic 50.0%
! CATAAAAATGGCGGAGCGGA+GGG - chr1_4:72529966-72529985 None:intergenic 50.0%
TCCCGAAGGACGTTTGTTTC+AGG + chr1_4:72530214-72530233 Msa0183570:CDS 50.0%
CAGCTTGGATCAACTGCGAT+TGG + chr1_4:72530353-72530372 Msa0183570:intron 50.0%
GCGTATTACTTCGCCTCTAC+TGG + chr1_4:72530415-72530434 Msa0183570:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_4:72530508-72530527 None:intergenic 50.0%
AAGGTCACAGGTTCAAGTCC+TGG + chr1_4:72530543-72530562 Msa0183570:intron 50.0%
AAGGGCAAAAAAGGGCAACC+CGG - chr1_4:72530668-72530687 None:intergenic 50.0%
AAAATAGCGCCGCTATGGTG+AGG + chr1_4:72530838-72530857 Msa0183570:intron 50.0%
TCAGTTTAGCAGTGCGGAGT+GGG + chr1_4:72530889-72530908 Msa0183570:intron 50.0%
CAACCCCAAAAGTGGGATAG+AGG - chr1_4:72530963-72530982 None:intergenic 50.0%
GTCAATCCTGCATTGTGGTG+CGG - chr1_4:72530992-72531011 None:intergenic 50.0%
GCGTAGTCAATCCTGCATTG+TGG - chr1_4:72530997-72531016 None:intergenic 50.0%
GCACATGTTTGTCTTGGTGG+TGG + chr1_4:72531015-72531034 Msa0183570:intron 50.0%
ATGTCCACAAACTTGCGGTG+GGG + chr1_4:72531101-72531120 Msa0183570:intron 50.0%
! CACATTGGCTGTGCAATGAG+TGG + chr1_4:72531342-72531361 Msa0183570:CDS 50.0%
! GCATGCACGAGTTGAAACTC+AGG + chr1_4:72531395-72531414 Msa0183570:CDS 50.0%
CTTTGGCAGTCTCGACCATT+TGG + chr1_4:72532033-72532052 Msa0183570:intron 50.0%
! GGAGTGTCTCTCCTTATTGC+TGG + chr1_4:72532054-72532073 Msa0183570:CDS 50.0%
TCTCGTCATGGCCAGCAATA+AGG - chr1_4:72532068-72532087 None:intergenic 50.0%
ATTGCTGGCCATGACGAGAA+TGG + chr1_4:72532069-72532088 Msa0183570:CDS 50.0%
!! CTGGACTATTGGTCTTGCTG+AGG + chr1_4:72533009-72533028 Msa0183570:intron 50.0%
GAGGGGAGTCAAATCACTAG+AGG - chr1_4:72533552-72533571 None:intergenic 50.0%
GGAGAGTAGATCAGATGGAG+GGG - chr1_4:72533569-72533588 None:intergenic 50.0%
TATAGATGACGAACCCTCGC+TGG + chr1_4:72533686-72533705 Msa0183570:intron 50.0%
CTCTCCATTCGAGGAGAGAA+TGG - chr1_4:72533932-72533951 None:intergenic 50.0%
CATTCTCTCCTCGAATGGAG+AGG + chr1_4:72533930-72533949 Msa0183570:intron 50.0%
AGGATGCAGACCCCATAATG+AGG + chr1_4:72533950-72533969 Msa0183570:intron 50.0%
TCAGTAGGGGGACAAACAAC+TGG - chr1_4:72534438-72534457 None:intergenic 50.0%
CCTGGCAATGTCAACGTTGT+TGG - chr1_4:72534508-72534527 None:intergenic 50.0%
CCAACAACGTTGACATTGCC+AGG + chr1_4:72534505-72534524 Msa0183570:CDS 50.0%
TCTTTATACCCCGTCTGAGG+TGG + chr1_4:72534545-72534564 Msa0183570:CDS 50.0%
ATCACAGCTTCCACCTCAGA+CGG - chr1_4:72534558-72534577 None:intergenic 50.0%
CTCTCTCTCTCTCTCTCGCT+GGG - chr1_4:72529868-72529887 None:intergenic 55.0%
TCTCTCTCTCTCTCTCTCGC+TGG - chr1_4:72529869-72529888 None:intergenic 55.0%
GAGCGGAGGGTTGAGAAATC+GGG - chr1_4:72529953-72529972 None:intergenic 55.0%
GGAGCGGAGGGTTGAGAAAT+CGG - chr1_4:72529954-72529973 None:intergenic 55.0%
! GCATAAAAATGGCGGAGCGG+AGG - chr1_4:72529967-72529986 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1_4:72530641-72530660 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1_4:72530642-72530661 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr1_4:72530646-72530665 Msa0183570:intron 55.0%
AGCGCAAAATAGCGCCGCTA+TGG + chr1_4:72530833-72530852 Msa0183570:intron 55.0%
GTCAGTTTAGCAGTGCGGAG+TGG + chr1_4:72530888-72530907 Msa0183570:intron 55.0%
CAGTTTAGCAGTGCGGAGTG+GGG + chr1_4:72530890-72530909 Msa0183570:intron 55.0%
AGTTTAGCAGTGCGGAGTGG+GGG + chr1_4:72530891-72530910 Msa0183570:intron 55.0%
GAGCGGTCAACCCCAAAAGT+GGG - chr1_4:72530970-72530989 None:intergenic 55.0%
TGTCCACAAACTTGCGGTGG+GGG + chr1_4:72531102-72531121 Msa0183570:intron 55.0%
!! TGTGACCTAGCCTTGCGCTT+TGG + chr1_4:72531572-72531591 Msa0183570:CDS 55.0%
!! GTGACCTAGCCTTGCGCTTT+GGG + chr1_4:72531573-72531592 Msa0183570:CDS 55.0%
!! TGACCTAGCCTTGCGCTTTG+GGG + chr1_4:72531574-72531593 Msa0183570:CDS 55.0%
ATCACCTTCCCCAAAGCGCA+AGG - chr1_4:72531585-72531604 None:intergenic 55.0%
GGCTAGGTCCATTCTCGTCA+TGG - chr1_4:72532080-72532099 None:intergenic 55.0%
TTAAGAGGGGTGACCAGCGA+GGG - chr1_4:72533702-72533721 None:intergenic 55.0%
GTCTGCATCCTCTCCATTCG+AGG - chr1_4:72533941-72533960 None:intergenic 55.0%
ATGATACGCTGGAGCAACCC+TGG - chr1_4:72534526-72534545 None:intergenic 55.0%
TCACAGCTTCCACCTCAGAC+GGG - chr1_4:72534557-72534576 None:intergenic 55.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1_4:72530497-72530516 Msa0183570:intron 60.0%
ATACGCAGGGTCCAGGAAGG+GGG - chr1_4:72530628-72530647 None:intergenic 60.0%
CATACGCAGGGTCCAGGAAG+GGG - chr1_4:72530629-72530648 None:intergenic 60.0%
GCATACGCAGGGTCCAGGAA+GGG - chr1_4:72530630-72530649 None:intergenic 60.0%
CTTCCTGGACCCTGCGTATG+CGG + chr1_4:72530629-72530648 Msa0183570:intron 60.0%
TTCCTGGACCCTGCGTATGC+GGG + chr1_4:72530630-72530649 Msa0183570:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr1_4:72530647-72530666 Msa0183570:intron 60.0%
GGAGCGGTCAACCCCAAAAG+TGG - chr1_4:72530971-72530990 None:intergenic 60.0%
TCCTGCATTGTGGTGCGGAG+CGG - chr1_4:72530987-72531006 None:intergenic 60.0%
TCACCCCCACCGCAAGTTTG+TGG - chr1_4:72531108-72531127 None:intergenic 60.0%
CACTGCTGGGCTCCTGAAAG+TGG - chr1_4:72531296-72531315 None:intergenic 60.0%
CTTTCAGGAGCCCAGCAGTG+TGG + chr1_4:72531296-72531315 Msa0183570:intron 60.0%
CTTCCCCAAAGCGCAAGGCT+AGG - chr1_4:72531580-72531599 None:intergenic 60.0%
!! CTAGCCTTGCGCTTTGGGGA+AGG + chr1_4:72531578-72531597 Msa0183570:CDS 60.0%
GTCCAGCTCCTCTCCAACTG+TGG + chr1_4:72533266-72533285 Msa0183570:intron 60.0%
CTCCACAGTTGGAGAGGAGC+TGG - chr1_4:72533271-72533290 None:intergenic 60.0%
CTTAAGAGGGGTGACCAGCG+AGG - chr1_4:72533703-72533722 None:intergenic 60.0%
CACAGCTTCCACCTCAGACG+GGG - chr1_4:72534556-72534575 None:intergenic 60.0%
GGAAGGGGGGTCCCACCATT+TGG - chr1_4:72530614-72530633 None:intergenic 65.0%
! AATGGTGGGACCCCCCTTCC+TGG + chr1_4:72530614-72530633 Msa0183570:intron 65.0%
TACGCAGGGTCCAGGAAGGG+GGG - chr1_4:72530627-72530646 None:intergenic 65.0%
CGCATACGCAGGGTCCAGGA+AGG - chr1_4:72530631-72530650 None:intergenic 65.0%
ACCGCTCCGCACCACAATGC+AGG + chr1_4:72530983-72531002 Msa0183570:intron 65.0%
CTCCCGCATACGCAGGGTCC+AGG - chr1_4:72530635-72530654 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72529782 72534984 72529782 ID=Msa0183570;Name=Msa0183570
chr1_4 mRNA 72529782 72534984 72529782 ID=Msa0183570-mRNA-1;Parent=Msa0183570;Name=Msa0183570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=122|1|1|1|0.8|0.72|11|394|237
chr1_4 exon 72529782 72529805 72529782 ID=Msa0183570-mRNA-1:exon:24489;Parent=Msa0183570-mRNA-1
chr1_4 exon 72529826 72529876 72529826 ID=Msa0183570-mRNA-1:exon:24490;Parent=Msa0183570-mRNA-1
chr1_4 exon 72529979 72530039 72529979 ID=Msa0183570-mRNA-1:exon:24491;Parent=Msa0183570-mRNA-1
chr1_4 exon 72530181 72530262 72530181 ID=Msa0183570-mRNA-1:exon:24492;Parent=Msa0183570-mRNA-1
chr1_4 exon 72530356 72530436 72530356 ID=Msa0183570-mRNA-1:exon:24493;Parent=Msa0183570-mRNA-1
chr1_4 exon 72531303 72531416 72531303 ID=Msa0183570-mRNA-1:exon:24494;Parent=Msa0183570-mRNA-1
chr1_4 exon 72531515 72531616 72531515 ID=Msa0183570-mRNA-1:exon:24495;Parent=Msa0183570-mRNA-1
chr1_4 exon 72532042 72532100 72532042 ID=Msa0183570-mRNA-1:exon:24496;Parent=Msa0183570-mRNA-1
chr1_4 exon 72533052 72533154 72533052 ID=Msa0183570-mRNA-1:exon:24497;Parent=Msa0183570-mRNA-1
chr1_4 exon 72534340 72534405 72534340 ID=Msa0183570-mRNA-1:exon:24498;Parent=Msa0183570-mRNA-1
chr1_4 exon 72534498 72534984 72534498 ID=Msa0183570-mRNA-1:exon:24499;Parent=Msa0183570-mRNA-1
chr1_4 five_prime_UTR 72529782 72529805 72529782 ID=Msa0183570-mRNA-1:five_prime_utr;Parent=Msa0183570-mRNA-1
chr1_4 five_prime_UTR 72529826 72529876 72529826 ID=Msa0183570-mRNA-1:five_prime_utr;Parent=Msa0183570-mRNA-1
chr1_4 five_prime_UTR 72529979 72530025 72529979 ID=Msa0183570-mRNA-1:five_prime_utr;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72530026 72530039 72530026 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72530181 72530262 72530181 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72530356 72530436 72530356 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72531303 72531416 72531303 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72531515 72531616 72531515 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72532042 72532100 72532042 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72533052 72533154 72533052 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72534340 72534405 72534340 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 CDS 72534498 72534590 72534498 ID=Msa0183570-mRNA-1:cds;Parent=Msa0183570-mRNA-1
chr1_4 three_prime_UTR 72534591 72534984 72534591 ID=Msa0183570-mRNA-1:three_prime_utr;Parent=Msa0183570-mRNA-1
Gene Sequence

>Msa0183570

ATGTTTCTCACAAGAACTGAGTATGACCGTGGAGTCAACACTTTTTCTCCCGAAGGACGTTTGTTTCAGGTTGAATATGCAATTGAAGCTATTAAGCTTGGATCAACTGCGATTGGCTTGAAAACGAAAGAGGGTGTGGTTCTTGCTGTTGAAAAGCGTATTACTTCGCCTCTACTGGAGCCCAGCAGTGTGGAGAAAATTATGGAAATTGATGATCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCACAGGTTCTCTTATGGTGAACCGATGACTGTAGAGTCTACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGGGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTTATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGCACATTTTGGCAATGCAATGCAAAGGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCAATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCGTATCATCTTTATACCCCGTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA

Protein sequence

>Msa0183570

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVISRL*