Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0044190 | sp|Q9M4T8|PSA5_SOYBN | 98.312 | 237 | 4 | 0 | 1 | 237 | 1 | 237 | 1.96e-175 | 484 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0044190 | Msa0177220 | 0.808418 | 3.128100e-50 | -8.615850e-47 |
Msa0044190 | Msa0183570 | 0.968545 | 7.882206e-129 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0044190 | MtrunA17_Chr1g0210811 | 100.000 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 5.53e-179 | 490 |
Msa0044190 | MtrunA17_Chr6g0453891 | 62.150 | 214 | 64 | 5 | 31 | 237 | 133 | 336 | 4.60e-75 | 230 |
Msa0044190 | MtrunA17_Chr7g0243311 | 45.161 | 217 | 107 | 5 | 8 | 218 | 5 | 215 | 2.41e-58 | 185 |
Msa0044190 | MtrunA17_Chr5g0401801 | 44.550 | 211 | 109 | 4 | 8 | 213 | 5 | 212 | 7.15e-55 | 175 |
Msa0044190 | MtrunA17_Chr2g0283841 | 40.343 | 233 | 129 | 5 | 6 | 234 | 2 | 228 | 1.22e-50 | 165 |
Msa0044190 | MtrunA17_Chr8g0371571 | 41.593 | 226 | 124 | 4 | 8 | 231 | 4 | 223 | 1.36e-50 | 165 |
Msa0044190 | MtrunA17_Chr0c02g0489661 | 35.526 | 228 | 142 | 2 | 6 | 231 | 4 | 228 | 1.46e-47 | 157 |
Msa0044190 | MtrunA17_Chr1g0155371 | 46.154 | 182 | 93 | 2 | 3 | 184 | 1 | 177 | 2.95e-47 | 157 |
Msa0044190 | MtrunA17_Chr8g0360781 | 34.199 | 231 | 142 | 5 | 8 | 231 | 9 | 236 | 1.43e-40 | 139 |
Msa0044190 | MtrunA17_Chr2g0308541 | 32.900 | 231 | 145 | 5 | 8 | 231 | 9 | 236 | 7.38e-39 | 135 |
Msa0044190 | MtrunA17_Chr6g0459741 | 34.783 | 207 | 120 | 2 | 6 | 206 | 6 | 203 | 3.31e-38 | 133 |
Msa0044190 | MtrunA17_Chr4g0004521 | 37.143 | 175 | 91 | 4 | 22 | 185 | 7 | 173 | 3.55e-26 | 102 |
Msa0044190 | MtrunA17_Chr4g0027841 | 34.239 | 184 | 97 | 7 | 11 | 184 | 91 | 260 | 5.53e-18 | 81.3 |
Msa0044190 | MtrunA17_Chr3g0116161 | 28.313 | 166 | 107 | 3 | 34 | 196 | 54 | 210 | 8.94e-15 | 71.6 |
Msa0044190 | MtrunA17_Chr5g0394931 | 30.464 | 151 | 94 | 3 | 45 | 192 | 13 | 155 | 7.56e-13 | 65.5 |
Msa0044190 | MtrunA17_Chr5g0399161 | 28.249 | 177 | 114 | 4 | 42 | 213 | 10 | 178 | 9.02e-13 | 65.1 |
Msa0044190 | MtrunA17_Chr7g0228681 | 24.873 | 197 | 138 | 4 | 31 | 225 | 35 | 223 | 5.86e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0044190 | AT3G14290.1 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 1.15e-175 | 482 |
Msa0044190 | AT1G53850.1 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.52e-175 | 481 |
Msa0044190 | AT1G53850.2 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.52e-175 | 481 |
Msa0044190 | AT3G22110.1 | 41.494 | 241 | 123 | 7 | 8 | 236 | 5 | 239 | 1.13e-56 | 181 |
Msa0044190 | AT5G66140.1 | 43.000 | 200 | 108 | 3 | 8 | 205 | 4 | 199 | 6.01e-48 | 159 |
Msa0044190 | AT1G16470.1 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.54e-47 | 157 |
Msa0044190 | AT1G16470.2 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.54e-47 | 157 |
Msa0044190 | AT3G51260.2 | 41.038 | 212 | 117 | 4 | 7 | 216 | 3 | 208 | 1.62e-47 | 157 |
Msa0044190 | AT1G79210.1 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.66e-47 | 157 |
Msa0044190 | AT1G79210.2 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.66e-47 | 157 |
Msa0044190 | AT1G79210.3 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.66e-47 | 157 |
Msa0044190 | AT3G51260.1 | 42.500 | 200 | 109 | 3 | 8 | 205 | 4 | 199 | 2.64e-47 | 157 |
Msa0044190 | AT5G42790.1 | 39.506 | 243 | 125 | 4 | 3 | 234 | 1 | 232 | 1.98e-46 | 155 |
Msa0044190 | AT1G47250.1 | 45.856 | 181 | 93 | 2 | 3 | 183 | 1 | 176 | 3.04e-46 | 155 |
Msa0044190 | AT5G35590.1 | 35.498 | 231 | 139 | 5 | 8 | 231 | 9 | 236 | 2.85e-41 | 141 |
Msa0044190 | AT2G27020.1 | 33.333 | 207 | 123 | 2 | 6 | 206 | 6 | 203 | 5.72e-38 | 133 |
Msa0044190 | AT2G05840.2 | 34.434 | 212 | 132 | 4 | 8 | 215 | 9 | 217 | 2.10e-37 | 130 |
Msa0044190 | AT2G05840.1 | 34.419 | 215 | 134 | 4 | 8 | 218 | 9 | 220 | 2.79e-37 | 131 |
Msa0044190 | AT2G27020.2 | 33.333 | 207 | 123 | 2 | 6 | 206 | 108 | 305 | 8.48e-37 | 132 |
Msa0044190 | AT4G15165.1 | 31.535 | 241 | 105 | 6 | 8 | 236 | 5 | 197 | 3.82e-35 | 124 |
Msa0044190 | AT2G05840.3 | 35.263 | 190 | 118 | 3 | 8 | 195 | 9 | 195 | 6.10e-35 | 124 |
Msa0044190 | AT3G26340.1 | 26.500 | 200 | 132 | 5 | 27 | 220 | 48 | 238 | 7.75e-15 | 72.4 |
Msa0044190 | AT1G13060.1 | 25.654 | 191 | 129 | 4 | 34 | 220 | 57 | 238 | 1.07e-13 | 69.3 |
Msa0044190 | AT4G14800.1 | 28.652 | 178 | 115 | 4 | 45 | 218 | 13 | 182 | 2.99e-12 | 63.9 |
Msa0044190 | AT5G40580.1 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.91e-12 | 64.7 |
Msa0044190 | AT5G40580.2 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.91e-12 | 64.7 |
Msa0044190 | AT3G27430.2 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 7.44e-12 | 63.9 |
Msa0044190 | AT4G14800.2 | 28.495 | 186 | 121 | 4 | 45 | 218 | 13 | 198 | 7.59e-12 | 63.2 |
Msa0044190 | AT3G27430.1 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 9.28e-12 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCCTTCTGGCACATTT+TGG | 0.189061 | 1_1:+75687647 | Msa0044190:CDS |
TCCCGAAGGACGTTTGTTTC+AGG | 0.228080 | 1_1:+75684804 | Msa0044190:CDS |
GTGACCTAGCCTTGCGCTTT+GGG | 0.251856 | 1_1:+75686160 | Msa0044190:CDS |
ATATGCAATTGAAGCTATTA+AGG | 0.287746 | 1_1:+75684831 | Msa0044190:CDS |
CTTTGGCAGTCTCGACCATT+TGG | 0.312188 | 1_1:+75686620 | Msa0044190:intron |
TAAAATAGTATCACAGCGTT+TGG | 0.327818 | 1_1:+75689332 | Msa0044190:three_prime_UTR |
AGACTGAATATCAGAAAATA+TGG | 0.331191 | 1_1:-75689293 | None:intergenic |
GGAGTGTCTCTCCTTATTGC+TGG | 0.335194 | 1_1:+75686641 | Msa0044190:CDS |
TGTGACCTAGCCTTGCGCTT+TGG | 0.345737 | 1_1:+75686159 | Msa0044190:CDS |
CAGAATCACAGGTTCTCTTA+TGG | 0.347192 | 1_1:+75686099 | Msa0044190:intron |
CAATGCAATGCAAAGGCTAT+TGG | 0.347609 | 1_1:+75687670 | Msa0044190:CDS |
TCTCGTCATGGCCAGCAATA+AGG | 0.348529 | 1_1:-75686652 | None:intergenic |
AATCAAATCACGCAAATAGA+TGG | 0.363237 | 1_1:-75689188 | None:intergenic |
CAGCAGTGTGGAGAAAATTA+TGG | 0.366170 | 1_1:+75685895 | Msa0044190:CDS |
ATCAATTCTGAAGCAAGTTA+TGG | 0.388035 | 1_1:+75688969 | Msa0044190:CDS |
AACCTGAAACAAACGTCCTT+CGG | 0.394934 | 1_1:-75684806 | None:intergenic |
TTGGTTTGATTTGATTTGAA+TGG | 0.405827 | 1_1:-75684592 | None:intergenic |
CCAACAACGTTGACATTGCC+AGG | 0.408754 | 1_1:+75689099 | Msa0044190:CDS |
ACCTGAAACAAACGTCCTTC+GGG | 0.423347 | 1_1:-75684805 | None:intergenic |
CCTGGCAATGTCAACGTTGT+TGG | 0.426746 | 1_1:-75689099 | None:intergenic |
CAGCTTGGATCAACTGCGAT+TGG | 0.442542 | 1_1:+75684942 | Msa0044190:intron |
AAAATAGTATCACAGCGTTT+GGG | 0.453345 | 1_1:+75689333 | Msa0044190:three_prime_UTR |
CTGGCAATGTCAACGTTGTT+GGG | 0.454160 | 1_1:-75689098 | None:intergenic |
GCGTATTACTTCGCCTCTAC+TGG | 0.457074 | 1_1:+75685004 | Msa0044190:CDS |
AGATATTACACTGATCCTTC+TGG | 0.466365 | 1_1:+75687637 | Msa0044190:intron |
CGCAAATAGATGGAAATCAT+AGG | 0.479822 | 1_1:-75689178 | None:intergenic |
AATGCAAAGGCTATTGGTTC+AGG | 0.500036 | 1_1:+75687676 | Msa0044190:CDS |
CTAGCCTTGCGCTTTGGGGA+AGG | 0.509941 | 1_1:+75686165 | Msa0044190:CDS |
ATTGCTGGCCATGACGAGAA+TGG | 0.514622 | 1_1:+75686656 | Msa0044190:CDS |
TATATTATCGAGTGTGGAGA+TGG | 0.521151 | 1_1:+75689443 | Msa0044190:three_prime_UTR |
GGAATATATACTTACAGGCT+AGG | 0.527284 | 1_1:-75686680 | None:intergenic |
ATCACAGCTTCCACCTCAGA+CGG | 0.535599 | 1_1:-75689149 | None:intergenic |
TCACAGCTTCCACCTCAGAC+GGG | 0.536535 | 1_1:-75689148 | None:intergenic |
TCTTTATACCCCGTCTGAGG+TGG | 0.544181 | 1_1:+75689139 | Msa0044190:CDS |
CTTGAAAACGAAAGAGGGTG+TGG | 0.545014 | 1_1:+75684965 | Msa0044190:CDS |
ATGATACGCTGGAGCAACCC+TGG | 0.548475 | 1_1:-75689117 | None:intergenic |
TGAATATCAGAAAATATGGT+AGG | 0.556483 | 1_1:-75689289 | None:intergenic |
CTTCCCCAAAGCGCAAGGCT+AGG | 0.558153 | 1_1:-75686164 | None:intergenic |
ATCTAGTATTGCATACAACT+TGG | 0.561296 | 1_1:-75689263 | None:intergenic |
TAACCTTGTGAGAAACATGT+TGG | 0.566164 | 1_1:-75684611 | None:intergenic |
GAAGCAAGTTATGGAAGAGA+AGG | 0.568369 | 1_1:+75688978 | Msa0044190:CDS |
GGCTAGGTCCATTCTCGTCA+TGG | 0.580425 | 1_1:-75686664 | None:intergenic |
ATAAGGAGAGACACTCCAAA+TGG | 0.589626 | 1_1:-75686635 | None:intergenic |
TGACCTAGCCTTGCGCTTTG+GGG | 0.590485 | 1_1:+75686161 | Msa0044190:CDS |
ATCACCTTCCCCAAAGCGCA+AGG | 0.591699 | 1_1:-75686169 | None:intergenic |
GCTATTGGTTCAGGATCAGA+AGG | 0.597231 | 1_1:+75687685 | Msa0044190:CDS |
GGAAGGTGATGAAGAATCCA+TGG | 0.599188 | 1_1:+75686182 | Msa0044190:CDS |
CTAGTATATATTATCGAGTG+TGG | 0.602194 | 1_1:+75689437 | Msa0044190:three_prime_UTR |
GTTGTAGACTCTACAGTCAT+CGG | 0.602200 | 1_1:-75686126 | None:intergenic |
CACATTGGCTGTGCAATGAG+TGG | 0.606594 | 1_1:+75685929 | Msa0044190:CDS |
GATTGGCTTGAAAACGAAAG+AGG | 0.610207 | 1_1:+75684959 | Msa0044190:CDS |
CATTGCCAAAATGTGCCAGA+AGG | 0.618837 | 1_1:-75687652 | None:intergenic |
AAACCAACATGTTTCTCACA+AGG | 0.620638 | 1_1:+75684608 | Msa0044190:exon |
ATGGAAATTGATGATCACAT+TGG | 0.621320 | 1_1:+75685914 | Msa0044190:CDS |
GAATAGGTACATACCAGTAG+AGG | 0.625077 | 1_1:-75685017 | None:intergenic |
ATTGGCTTGAAAACGAAAGA+GGG | 0.626167 | 1_1:+75684960 | Msa0044190:CDS |
TCATCTTTATACCCCGTCTG+AGG | 0.634475 | 1_1:+75689136 | Msa0044190:CDS |
CAACAACGTTGACATTGCCA+GGG | 0.635659 | 1_1:+75689100 | Msa0044190:CDS |
CACAGCTTCCACCTCAGACG+GGG | 0.645540 | 1_1:-75689147 | None:intergenic |
GGGGTATAAAGATGATACGC+TGG | 0.658506 | 1_1:-75689128 | None:intergenic |
GCATGCACGAGTTGAAACTC+AGG | 0.662565 | 1_1:+75685982 | Msa0044190:CDS |
CTTTCAGGAGCCCAGCAGTG+TGG | 0.675944 | 1_1:+75685883 | Msa0044190:intron |
ATTAGAACTGAGTATGACCG+TGG | 0.689159 | 1_1:+75684766 | Msa0044190:intron |
TCTGCAAGAACAATTCAACA+AGG | 0.713271 | 1_1:+75687720 | Msa0044190:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTAATTTTTTTTTTTTGT+TGG | + | chr1_1:75684915-75684934 | Msa0044190:intron | 10.0% |
!! | CAAAAAAAAATTACATAAAA+GGG | - | chr1_1:75685042-75685061 | None:intergenic | 10.0% |
!! | ACAAAAAAAAATTACATAAA+AGG | - | chr1_1:75685043-75685062 | None:intergenic | 10.0% |
!!! | TTTAGAATAAATTGAATTAT+GGG | + | chr1_1:75685362-75685381 | Msa0044190:intron | 10.0% |
!!! | TTTATAATTTAAAATGTTGT+TGG | + | chr1_1:75688800-75688819 | Msa0044190:intron | 10.0% |
!! | AATTCAATCATAAAAAAATT+AGG | + | chr1_1:75689494-75689513 | Msa0044190:three_prime_UTR | 10.0% |
!! | ATTCAATCATAAAAAAATTA+GGG | + | chr1_1:75689495-75689514 | Msa0044190:three_prime_UTR | 10.0% |
!!! | GTTTAGAATAAATTGAATTA+TGG | + | chr1_1:75685361-75685380 | Msa0044190:intron | 15.0% |
!! | TTAGAATAAATTGAATTATG+GGG | + | chr1_1:75685363-75685382 | Msa0044190:intron | 15.0% |
!!! | ATATTGATATTGATCTATTT+TGG | + | chr1_1:75686065-75686084 | Msa0044190:intron | 15.0% |
!!! | TTTTTTTATTAGTGTACAAA+TGG | + | chr1_1:75686488-75686507 | Msa0044190:intron | 15.0% |
!!! | TTTTTTATTAGTGTACAAAT+GGG | + | chr1_1:75686489-75686508 | Msa0044190:intron | 15.0% |
!!! | CTTTCTTATTATTTCTTTAA+TGG | + | chr1_1:75687140-75687159 | Msa0044190:intron | 15.0% |
!! | ATATCATTAAAATTATTAGC+TGG | + | chr1_1:75687796-75687815 | Msa0044190:intron | 15.0% |
!! | TATCATTAAAATTATTAGCT+GGG | + | chr1_1:75687797-75687816 | Msa0044190:intron | 15.0% |
!! | TATTAATTACCTTAATTCTT+TGG | + | chr1_1:75688664-75688683 | Msa0044190:intron | 15.0% |
!! | ATTAATTACCTTAATTCTTT+GGG | + | chr1_1:75688665-75688684 | Msa0044190:intron | 15.0% |
!! | AGTAAAAATATATAATAGCA+CGG | - | chr1_1:75689402-75689421 | None:intergenic | 15.0% |
!! | ACAAAAATCCTAATACATTT+GGG | - | chr1_1:75684712-75684731 | None:intergenic | 20.0% |
!! | AACAAAAATCCTAATACATT+TGG | - | chr1_1:75684713-75684732 | None:intergenic | 20.0% |
!! | ACCCTAATAATAATAATAGA+GGG | - | chr1_1:75684864-75684883 | None:intergenic | 20.0% |
!! | AACCCTAATAATAATAATAG+AGG | - | chr1_1:75684865-75684884 | None:intergenic | 20.0% |
!! | AAAATTACATAAAAGGGAAT+AGG | - | chr1_1:75685036-75685055 | None:intergenic | 20.0% |
!! | AATAAATATGACTATAAGCA+CGG | - | chr1_1:75685806-75685825 | None:intergenic | 20.0% |
!! | AAATTGTAATGTATGTTTCA+TGG | - | chr1_1:75685848-75685867 | None:intergenic | 20.0% |
!!! | CAACAATAGATTTTAAGTTT+AGG | - | chr1_1:75686417-75686436 | None:intergenic | 20.0% |
!! | CTAAACTTAAAATCTATTGT+TGG | + | chr1_1:75686415-75686434 | Msa0044190:intron | 20.0% |
!! | ATATTAAACATTCCTATGAA+AGG | + | chr1_1:75686438-75686457 | Msa0044190:intron | 20.0% |
!! | ATAAAAAAACACCTTACAAA+AGG | - | chr1_1:75686477-75686496 | None:intergenic | 20.0% |
!!! | TACCATTTATTTTTTCTCTT+TGG | + | chr1_1:75686603-75686622 | Msa0044190:intron | 20.0% |
!! | ATTAGTTAAATTACAGAGAA+AGG | + | chr1_1:75686844-75686863 | Msa0044190:intron | 20.0% |
!! | ATGTTAAAACATTTCTAAAC+CGG | + | chr1_1:75686943-75686962 | Msa0044190:intron | 20.0% |
!! | AACAAAAATGAGAAAATTAC+AGG | - | chr1_1:75686992-75687011 | None:intergenic | 20.0% |
!! | ATAAAAAAGAAAGAAGTGAT+GGG | - | chr1_1:75687050-75687069 | None:intergenic | 20.0% |
!! | AATAAAAAAGAAAGAAGTGA+TGG | - | chr1_1:75687051-75687070 | None:intergenic | 20.0% |
!!! | ATTTATTTCCTTTTTCATTC+TGG | + | chr1_1:75687577-75687596 | Msa0044190:intron | 20.0% |
!! | TGTTAAATAGATACACAAAA+TGG | + | chr1_1:75688494-75688513 | Msa0044190:intron | 20.0% |
!! | TTAATTACCTTAATTCTTTG+GGG | + | chr1_1:75688666-75688685 | Msa0044190:intron | 20.0% |
!! | AAGAGTTGAATATGATTTAT+AGG | - | chr1_1:75688697-75688716 | None:intergenic | 20.0% |
!!! | AGAATATCAATATGATTTGT+AGG | - | chr1_1:75688721-75688740 | None:intergenic | 20.0% |
!! | TCATAAAAAAATTAGGGTAA+AGG | + | chr1_1:75689501-75689520 | Msa0044190:three_prime_UTR | 20.0% |
!! | CATAAAAAAATTAGGGTAAA+GGG | + | chr1_1:75689502-75689521 | Msa0044190:three_prime_UTR | 20.0% |
! | ATTGGAAAAAAGTTACCTAA+AGG | - | chr1_1:75684486-75684505 | None:intergenic | 25.0% |
!!! | TTGGTTTGATTTGATTTGAA+TGG | - | chr1_1:75684595-75684614 | None:intergenic | 25.0% |
!! | TAATTTTCCCCAAATGTATT+AGG | + | chr1_1:75684701-75684720 | Msa0044190:intron | 25.0% |
! | CAAAAATCCTAATACATTTG+GGG | - | chr1_1:75684711-75684730 | None:intergenic | 25.0% |
!!! | GTATTAGGATTTTTGTTTCT+AGG | + | chr1_1:75684716-75684735 | Msa0044190:intron | 25.0% |
! | ATATGCAATTGAAGCTATTA+AGG | + | chr1_1:75684831-75684850 | Msa0044190:CDS | 25.0% |
! | TGCCCTCTATTATTATTATT+AGG | + | chr1_1:75684859-75684878 | Msa0044190:intron | 25.0% |
! | GCCCTCTATTATTATTATTA+GGG | + | chr1_1:75684860-75684879 | Msa0044190:intron | 25.0% |
!!! | GGTTTTTAACTATCTGTATT+CGG | + | chr1_1:75684881-75684900 | Msa0044190:intron | 25.0% |
!!! | GTTTTTAACTATCTGTATTC+GGG | + | chr1_1:75684882-75684901 | Msa0044190:intron | 25.0% |
!! | TCAGAATTACATCTAAAACT+GGG | - | chr1_1:75685745-75685764 | None:intergenic | 25.0% |
!! | TTCAGAATTACATCTAAAAC+TGG | - | chr1_1:75685746-75685765 | None:intergenic | 25.0% |
! | AATAGAATGTTGTATGTAGT+TGG | + | chr1_1:75686022-75686041 | Msa0044190:intron | 25.0% |
!!! | TTTATTTTTCACAGAATCAC+AGG | + | chr1_1:75686088-75686107 | Msa0044190:intron | 25.0% |
! | TGCATATTCTGAATGTTTAA+TGG | + | chr1_1:75686344-75686363 | Msa0044190:intron | 25.0% |
! | TTGTAAAAGATACTTACTAG+TGG | + | chr1_1:75686544-75686563 | Msa0044190:intron | 25.0% |
! | TGCCAAAGAGAAAAAATAAA+TGG | - | chr1_1:75686608-75686627 | None:intergenic | 25.0% |
! | TAGATGGAATATATACTTAC+AGG | - | chr1_1:75686688-75686707 | None:intergenic | 25.0% |
!! | AAAAGAAAGTGTAACATACA+AGG | - | chr1_1:75686818-75686837 | None:intergenic | 25.0% |
!! | TATGTTACACTTTCTTTTCT+GGG | + | chr1_1:75686820-75686839 | Msa0044190:intron | 25.0% |
! | AAATTCTTGTCAAATATGTC+CGG | - | chr1_1:75686965-75686984 | None:intergenic | 25.0% |
!!! | TTTCTCATTTTTGTTTCACT+TGG | + | chr1_1:75686997-75687016 | Msa0044190:intron | 25.0% |
!!! | TTCACAAATACTTTTGAGAA+AGG | - | chr1_1:75687081-75687100 | None:intergenic | 25.0% |
!!! | TATTTTGATTTTGTAGGATC+AGG | + | chr1_1:75687500-75687519 | Msa0044190:intron | 25.0% |
! | ATTAAAATTATTAGCTGGGA+TGG | + | chr1_1:75687801-75687820 | Msa0044190:intron | 25.0% |
!! | TGTTATTTGCAACAGTATTA+AGG | - | chr1_1:75688639-75688658 | None:intergenic | 25.0% |
! | AGACAAAAATATACAAGAGA+TGG | - | chr1_1:75688755-75688774 | None:intergenic | 25.0% |
!!! | ATCTCTTGTATATTTTTGTC+TGG | + | chr1_1:75688754-75688773 | Msa0044190:intron | 25.0% |
! | TTGCTTAAAGATTATCTTTC+AGG | + | chr1_1:75688849-75688868 | Msa0044190:intron | 25.0% |
!! | ATTGATTTATTATGTTGTGC+AGG | + | chr1_1:75688912-75688931 | Msa0044190:intron | 25.0% |
! | TTAGAATATATTCTCAGTAG+GGG | - | chr1_1:75689045-75689064 | None:intergenic | 25.0% |
! | GTTAGAATATATTCTCAGTA+GGG | - | chr1_1:75689046-75689065 | None:intergenic | 25.0% |
! | AGTTAGAATATATTCTCAGT+AGG | - | chr1_1:75689047-75689066 | None:intergenic | 25.0% |
! | TGAATATCAGAAAATATGGT+AGG | - | chr1_1:75689292-75689311 | None:intergenic | 25.0% |
! | AGACTGAATATCAGAAAATA+TGG | - | chr1_1:75689296-75689315 | None:intergenic | 25.0% |
AGAAGAAGAAGAAGAGAAAA+GGG | - | chr1_1:75684515-75684534 | None:intergenic | 30.0% | |
AAGAAGAAGAAGAAGAGAAA+AGG | - | chr1_1:75684516-75684535 | None:intergenic | 30.0% | |
GATAGATCACTGCATAAAAA+TGG | - | chr1_1:75684568-75684587 | None:intergenic | 30.0% | |
TAAAAGAGTGAGAGAGAAAA+GGG | - | chr1_1:75684639-75684658 | None:intergenic | 30.0% | |
ATAAAAGAGTGAGAGAGAAA+AGG | - | chr1_1:75684640-75684659 | None:intergenic | 30.0% | |
! | TTTTCTCTCTCACTCTTTTA+TGG | + | chr1_1:75684639-75684658 | Msa0044190:intron | 30.0% |
!!! | TTTTTTGTTGGATTTCAGCT+TGG | + | chr1_1:75684927-75684946 | Msa0044190:intron | 30.0% |
ATGAAAATCTGCCCTAAAAA+GGG | - | chr1_1:75685273-75685292 | None:intergenic | 30.0% | |
! | CACGCATATTTTTCTTACTT+GGG | - | chr1_1:75685310-75685329 | None:intergenic | 30.0% |
AATTGAATTATGGGGATATC+TGG | + | chr1_1:75685371-75685390 | Msa0044190:intron | 30.0% | |
! | ACTGCTGTTTGATAATTTGT+TGG | - | chr1_1:75685523-75685542 | None:intergenic | 30.0% |
TGTGTTAAAATTCCACTTTC+AGG | + | chr1_1:75685868-75685887 | Msa0044190:intron | 30.0% | |
! | ATGGAAATTGATGATCACAT+TGG | + | chr1_1:75685914-75685933 | Msa0044190:CDS | 30.0% |
AGCTAAGAAGTTATATACCA+TGG | - | chr1_1:75686202-75686221 | None:intergenic | 30.0% | |
TATATATTCCATCTAAGCCA+TGG | + | chr1_1:75686693-75686712 | Msa0044190:intron | 30.0% | |
AACACAGAAAATGAGTCAAA+AGG | - | chr1_1:75686747-75686766 | None:intergenic | 30.0% | |
! | GTATGTTACACTTTCTTTTC+TGG | + | chr1_1:75686819-75686838 | Msa0044190:intron | 30.0% |
! | ATGTTACACTTTCTTTTCTG+GGG | + | chr1_1:75686821-75686840 | Msa0044190:intron | 30.0% |
! | GAAATAATAAGAAAGAGTGC+AGG | - | chr1_1:75687135-75687154 | None:intergenic | 30.0% |
! | GAGAATGATGCTATAGTTTT+AGG | + | chr1_1:75687169-75687188 | Msa0044190:intron | 30.0% |
! | GTAAATACATCTTTTCTGTG+CGG | + | chr1_1:75687225-75687244 | Msa0044190:intron | 30.0% |
TTCTTGTTCAAACTAGTTCA+TGG | + | chr1_1:75687308-75687327 | Msa0044190:intron | 30.0% | |
TTGAGTCTCAAATCCTAATT+GGG | - | chr1_1:75687395-75687414 | None:intergenic | 30.0% | |
ATTGAGTCTCAAATCCTAAT+TGG | - | chr1_1:75687396-75687415 | None:intergenic | 30.0% | |
!! | TGCATTAATTTGTCTGTGAT+GGG | - | chr1_1:75687442-75687461 | None:intergenic | 30.0% |
AGAAAATAATTGCACAGCAT+GGG | + | chr1_1:75687477-75687496 | Msa0044190:intron | 30.0% | |
!!! | CATGGGTATTTTGATTTTGT+AGG | + | chr1_1:75687494-75687513 | Msa0044190:intron | 30.0% |
!! | GGTTTTTCAATAGAACATCA+TGG | - | chr1_1:75688049-75688068 | None:intergenic | 30.0% |
CTATAAGGAGACTATTAAGA+AGG | - | chr1_1:75688103-75688122 | None:intergenic | 30.0% | |
! | AGTCTCCTTATAGTTTTTCT+AGG | + | chr1_1:75688110-75688129 | Msa0044190:intron | 30.0% |
GAAGACCTAGAAAAACTATA+AGG | - | chr1_1:75688118-75688137 | None:intergenic | 30.0% | |
TTCTACCATCTTTCTACTAT+AGG | + | chr1_1:75688238-75688257 | Msa0044190:intron | 30.0% | |
TCATCTATAGTAGAAAGATG+GGG | - | chr1_1:75688269-75688288 | None:intergenic | 30.0% | |
GTCATCTATAGTAGAAAGAT+GGG | - | chr1_1:75688270-75688289 | None:intergenic | 30.0% | |
! | AAATTCTTTTAGACGCAGAA+AGG | - | chr1_1:75688322-75688341 | None:intergenic | 30.0% |
TTTCTGCGTCTAAAAGAATT+TGG | + | chr1_1:75688321-75688340 | Msa0044190:intron | 30.0% | |
TTCTGCGTCTAAAAGAATTT+GGG | + | chr1_1:75688322-75688341 | Msa0044190:intron | 30.0% | |
AAAAGAATTTGGGCTCTATT+TGG | + | chr1_1:75688332-75688351 | Msa0044190:intron | 30.0% | |
TCTCCATTTCTCAAAACAAA+TGG | - | chr1_1:75688463-75688482 | None:intergenic | 30.0% | |
AAGATTATCTTTCAGGATAG+AGG | + | chr1_1:75688856-75688875 | Msa0044190:intron | 30.0% | |
GACATGAAAACAAGTGAATT+TGG | + | chr1_1:75688888-75688907 | Msa0044190:intron | 30.0% | |
!! | ATCAATTCTGAAGCAAGTTA+TGG | + | chr1_1:75688969-75688988 | Msa0044190:CDS | 30.0% |
TAGAATATATTCTCAGTAGG+GGG | - | chr1_1:75689044-75689063 | None:intergenic | 30.0% | |
TTCTTCTGTACTTTCACATT+AGG | + | chr1_1:75689070-75689089 | Msa0044190:intron | 30.0% | |
AATCAAATCACGCAAATAGA+TGG | - | chr1_1:75689191-75689210 | None:intergenic | 30.0% | |
ATCTAGTATTGCATACAACT+TGG | - | chr1_1:75689266-75689285 | None:intergenic | 30.0% | |
TAAAATAGTATCACAGCGTT+TGG | + | chr1_1:75689332-75689351 | Msa0044190:three_prime_UTR | 30.0% | |
AAAATAGTATCACAGCGTTT+GGG | + | chr1_1:75689333-75689352 | Msa0044190:three_prime_UTR | 30.0% | |
CTAGTATATATTATCGAGTG+TGG | + | chr1_1:75689437-75689456 | Msa0044190:three_prime_UTR | 30.0% | |
AGATCACTGCATAAAAATGG+CGG | - | chr1_1:75684565-75684584 | None:intergenic | 35.0% | |
AAACCAACATGTTTCTCACA+AGG | + | chr1_1:75684608-75684627 | Msa0044190:exon | 35.0% | |
TAACCTTGTGAGAAACATGT+TGG | - | chr1_1:75684614-75684633 | None:intergenic | 35.0% | |
TTAACTATCTGTATTCGGGT+TGG | + | chr1_1:75684886-75684905 | Msa0044190:intron | 35.0% | |
!! | ATTGGCTTGAAAACGAAAGA+GGG | + | chr1_1:75684960-75684979 | Msa0044190:CDS | 35.0% |
!!! | TTACCCTGTTTTTACACAAG+AGG | - | chr1_1:75685164-75685183 | None:intergenic | 35.0% |
TCTTGTGTAAAAACAGGGTA+AGG | + | chr1_1:75685163-75685182 | Msa0044190:intron | 35.0% | |
GATGAAAATCTGCCCTAAAA+AGG | - | chr1_1:75685274-75685293 | None:intergenic | 35.0% | |
! | GCACGCATATTTTTCTTACT+TGG | - | chr1_1:75685311-75685330 | None:intergenic | 35.0% |
CATTATTAACCTCACCATAG+CGG | - | chr1_1:75685437-75685456 | None:intergenic | 35.0% | |
AAGTTTGTGGACATTTCACA+TGG | - | chr1_1:75685682-75685701 | None:intergenic | 35.0% | |
AAAACTGGGTATAACACGTT+TGG | - | chr1_1:75685731-75685750 | None:intergenic | 35.0% | |
! | ATAATTTTCTCCACACTGCT+GGG | - | chr1_1:75685896-75685915 | None:intergenic | 35.0% |
TGCTTACAGTGCTTTCTTTA+AGG | + | chr1_1:75686250-75686269 | Msa0044190:intron | 35.0% | |
TTCAGAATATGCAACACACA+AGG | - | chr1_1:75686337-75686356 | None:intergenic | 35.0% | |
!! | ATACTTACTAGTGGTGTTGT+TGG | + | chr1_1:75686553-75686572 | Msa0044190:intron | 35.0% |
GGAATATATACTTACAGGCT+AGG | - | chr1_1:75686683-75686702 | None:intergenic | 35.0% | |
GTGTAACATACAAGGAACAA+CGG | - | chr1_1:75686810-75686829 | None:intergenic | 35.0% | |
AATTACAGAGAAAGGACATG+TGG | + | chr1_1:75686852-75686871 | Msa0044190:intron | 35.0% | |
! | AAGAACAGTCGCAATTTTTC+TGG | + | chr1_1:75686888-75686907 | Msa0044190:intron | 35.0% |
GGATATTCATATGCAAAGAG+TGG | + | chr1_1:75686909-75686928 | Msa0044190:intron | 35.0% | |
!! | TTTTGTTTCACTTGGTTCCT+TGG | + | chr1_1:75687005-75687024 | Msa0044190:intron | 35.0% |
TGTATTTACGCACACATCAA+TGG | - | chr1_1:75687214-75687233 | None:intergenic | 35.0% | |
GTTTCCTGTTATGGTTCAAA+AGG | - | chr1_1:75687347-75687366 | None:intergenic | 35.0% | |
CCACTAAATGTTTCCTGTTA+TGG | - | chr1_1:75687356-75687375 | None:intergenic | 35.0% | |
CCATAACAGGAAACATTTAG+TGG | + | chr1_1:75687353-75687372 | Msa0044190:intron | 35.0% | |
AGGAAACATTTAGTGGTAGT+TGG | + | chr1_1:75687360-75687379 | Msa0044190:intron | 35.0% | |
TGAGTCTCAAATCCTAATTG+GGG | - | chr1_1:75687394-75687413 | None:intergenic | 35.0% | |
! | TAATTTGTCTGTGATGGGAA+TGG | - | chr1_1:75687437-75687456 | None:intergenic | 35.0% |
!! | CTGCATTAATTTGTCTGTGA+TGG | - | chr1_1:75687443-75687462 | None:intergenic | 35.0% |
CAGAAAATAATTGCACAGCA+TGG | + | chr1_1:75687476-75687495 | Msa0044190:intron | 35.0% | |
CCAATAGTCCAGAATGAAAA+AGG | - | chr1_1:75687588-75687607 | None:intergenic | 35.0% | |
!! | CCTTTTTCATTCTGGACTAT+TGG | + | chr1_1:75687585-75687604 | Msa0044190:intron | 35.0% |
AGATATTACACTGATCCTTC+TGG | + | chr1_1:75687637-75687656 | Msa0044190:intron | 35.0% | |
!! | ATTTTGGCAATGCAATGCAA+AGG | + | chr1_1:75687663-75687682 | Msa0044190:CDS | 35.0% |
TCTGCAAGAACAATTCAACA+AGG | + | chr1_1:75687720-75687739 | Msa0044190:CDS | 35.0% | |
TAATAAGCTGGAGAAAGACA+TGG | - | chr1_1:75688070-75688089 | None:intergenic | 35.0% | |
TCTCCAGCTTATTAATCTCT+AGG | + | chr1_1:75688076-75688095 | Msa0044190:intron | 35.0% | |
CTCCTTACTACAAAATCCAT+AGG | + | chr1_1:75688179-75688198 | Msa0044190:intron | 35.0% | |
! | GACCTATGGATTTTGTAGTA+AGG | - | chr1_1:75688184-75688203 | None:intergenic | 35.0% |
AAATTAGACTCAGGTGGTTT+GGG | - | chr1_1:75688220-75688239 | None:intergenic | 35.0% | |
AGATGGTAGAAATTAGACTC+AGG | - | chr1_1:75688229-75688248 | None:intergenic | 35.0% | |
TAGCACCTATAGTAGAAAGA+TGG | - | chr1_1:75688246-75688265 | None:intergenic | 35.0% | |
CGTCATCTATAGTAGAAAGA+TGG | - | chr1_1:75688271-75688290 | None:intergenic | 35.0% | |
!!! | GCTCCATTTGTTTTGAGAAA+TGG | + | chr1_1:75688457-75688476 | Msa0044190:intron | 35.0% |
TAACAACTCTCCTCATTATG+GGG | - | chr1_1:75688557-75688576 | None:intergenic | 35.0% | |
GTAACAACTCTCCTCATTAT+GGG | - | chr1_1:75688558-75688577 | None:intergenic | 35.0% | |
AACTGGAAGTAACATGCATT+TGG | - | chr1_1:75689015-75689034 | None:intergenic | 35.0% | |
CGCAAATAGATGGAAATCAT+AGG | - | chr1_1:75689181-75689200 | None:intergenic | 35.0% | |
TATATTATCGAGTGTGGAGA+TGG | + | chr1_1:75689443-75689462 | Msa0044190:three_prime_UTR | 35.0% | |
! | AGTGTGATGTGGGCTTTTTA+TGG | - | chr1_1:75684395-75684414 | None:intergenic | 40.0% |
! | TCGATTTTTCGCAGTGTGAT+GGG | - | chr1_1:75684424-75684443 | None:intergenic | 40.0% |
! | TTCGATTTTTCGCAGTGTGA+TGG | - | chr1_1:75684425-75684444 | None:intergenic | 40.0% |
! | AAGAGAAAAGGGTGTGAGAT+TGG | - | chr1_1:75684504-75684523 | None:intergenic | 40.0% |
ATTAGAACTGAGTATGACCG+TGG | + | chr1_1:75684766-75684785 | Msa0044190:intron | 40.0% | |
!! | GAGAAAAAGTGTTGACTCCA+CGG | - | chr1_1:75684786-75684805 | None:intergenic | 40.0% |
AACCTGAAACAAACGTCCTT+CGG | - | chr1_1:75684809-75684828 | None:intergenic | 40.0% | |
!! | GATTGGCTTGAAAACGAAAG+AGG | + | chr1_1:75684959-75684978 | Msa0044190:CDS | 40.0% |
GAATAGGTACATACCAGTAG+AGG | - | chr1_1:75685020-75685039 | None:intergenic | 40.0% | |
!! | TTTAGGGCAGATTTTCATCG+AGG | + | chr1_1:75685066-75685085 | Msa0044190:intron | 40.0% |
! | TTAGGGCAGATTTTCATCGA+GGG | + | chr1_1:75685067-75685086 | Msa0044190:intron | 40.0% |
GTTGTTGTCATGTGACTGTA+AGG | + | chr1_1:75685113-75685132 | Msa0044190:intron | 40.0% | |
ACAGCCTCTTGTGTAAAAAC+AGG | + | chr1_1:75685157-75685176 | Msa0044190:intron | 40.0% | |
CAGCCTCTTGTGTAAAAACA+GGG | + | chr1_1:75685158-75685177 | Msa0044190:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | + | chr1_1:75685189-75685208 | Msa0044190:intron | 40.0% | |
!!! | TGCCCTTTTTTGCCCTTTTT+AGG | + | chr1_1:75685258-75685277 | Msa0044190:intron | 40.0% |
!!! | GCCCTTTTTTGCCCTTTTTA+GGG | + | chr1_1:75685259-75685278 | Msa0044190:intron | 40.0% |
GCCCTAAAAAGGGCAAAAAA+GGG | - | chr1_1:75685263-75685282 | None:intergenic | 40.0% | |
TGCCCTAAAAAGGGCAAAAA+AGG | - | chr1_1:75685264-75685283 | None:intergenic | 40.0% | |
CGCTATGGTGAGGTTAATAA+TGG | + | chr1_1:75685435-75685454 | Msa0044190:intron | 40.0% | |
TAACAGTCAGTTTAGCAGTG+CGG | + | chr1_1:75685470-75685489 | Msa0044190:intron | 40.0% | |
GTGAAATGTCCACAAACTTG+CGG | + | chr1_1:75685683-75685702 | Msa0044190:intron | 40.0% | |
! | CATAATTTTCTCCACACTGC+TGG | - | chr1_1:75685897-75685916 | None:intergenic | 40.0% |
CAGCAGTGTGGAGAAAATTA+TGG | + | chr1_1:75685895-75685914 | Msa0044190:CDS | 40.0% | |
CAGAATCACAGGTTCTCTTA+TGG | + | chr1_1:75686099-75686118 | Msa0044190:intron | 40.0% | |
GTTGTAGACTCTACAGTCAT+CGG | - | chr1_1:75686129-75686148 | None:intergenic | 40.0% | |
! | CATGCAAGTTCACAGGTTTT+GGG | - | chr1_1:75686276-75686295 | None:intergenic | 40.0% |
! | TCATGCAAGTTCACAGGTTT+TGG | - | chr1_1:75686277-75686296 | None:intergenic | 40.0% |
CAGTGGCTTAATCCTTTCAT+AGG | - | chr1_1:75686453-75686472 | None:intergenic | 40.0% | |
! | TAAGCCACTGTCCTTTTGTA+AGG | + | chr1_1:75686463-75686482 | Msa0044190:intron | 40.0% |
AACACCTTACAAAAGGACAG+TGG | - | chr1_1:75686470-75686489 | None:intergenic | 40.0% | |
ATAAGGAGAGACACTCCAAA+TGG | - | chr1_1:75686638-75686657 | None:intergenic | 40.0% | |
AGAAGTAACCATGGCTTAGA+TGG | - | chr1_1:75686704-75686723 | None:intergenic | 40.0% | |
ACATGACTCAGAAGTAACCA+TGG | - | chr1_1:75686713-75686732 | None:intergenic | 40.0% | |
TGCAAAGAGTGGTTAATGAG+TGG | + | chr1_1:75686920-75686939 | Msa0044190:intron | 40.0% | |
! | AAGATGGCATGTTACTTCCA+AGG | - | chr1_1:75687025-75687044 | None:intergenic | 40.0% |
CACACATCAATGGTAAGAGT+AGG | - | chr1_1:75687204-75687223 | None:intergenic | 40.0% | |
ACACTGCATTGTTCAACTCT+CGG | + | chr1_1:75687259-75687278 | Msa0044190:intron | 40.0% | |
ACTAGTTCATGGTAGCAACT+TGG | + | chr1_1:75687319-75687338 | Msa0044190:intron | 40.0% | |
GAGTCTCAAATCCTAATTGG+GGG | - | chr1_1:75687393-75687412 | None:intergenic | 40.0% | |
TCAGCAGTCACTAGATGATA+CGG | + | chr1_1:75687533-75687552 | Msa0044190:intron | 40.0% | |
CAATGCAATGCAAAGGCTAT+TGG | + | chr1_1:75687670-75687689 | Msa0044190:CDS | 40.0% | |
!! | AATGCAAAGGCTATTGGTTC+AGG | + | chr1_1:75687676-75687695 | Msa0044190:CDS | 40.0% |
AGGTATCCATGTTCTTACAG+TGG | + | chr1_1:75687740-75687759 | Msa0044190:intron | 40.0% | |
GGTATCCATGTTCTTACAGT+GGG | + | chr1_1:75687741-75687760 | Msa0044190:intron | 40.0% | |
AACAACCCACTGTAAGAACA+TGG | - | chr1_1:75687749-75687768 | None:intergenic | 40.0% | |
TATTAGCTGGGATGGTAAAG+TGG | + | chr1_1:75687809-75687828 | Msa0044190:intron | 40.0% | |
! | ATCTCCATTTTCTCCACAGT+TGG | - | chr1_1:75687876-75687895 | None:intergenic | 40.0% |
! | GCATGCACTAAATTTGAGAC+TGG | - | chr1_1:75687901-75687920 | None:intergenic | 40.0% |
GTGCATGCAGATTCAAAACA+TGG | + | chr1_1:75687913-75687932 | Msa0044190:intron | 40.0% | |
CTTATCTCACTAAGTGGAGT+CGG | + | chr1_1:75688004-75688023 | Msa0044190:intron | 40.0% | |
GGACCTAGAGATTAATAAGC+TGG | - | chr1_1:75688082-75688101 | None:intergenic | 40.0% | |
AGTCAAATCACTAGAGGTAG+GGG | - | chr1_1:75688140-75688159 | None:intergenic | 40.0% | |
GAGTCAAATCACTAGAGGTA+GGG | - | chr1_1:75688141-75688160 | None:intergenic | 40.0% | |
AGTAAGGAGAGTAGATCAGA+TGG | - | chr1_1:75688168-75688187 | None:intergenic | 40.0% | |
GAAATTAGACTCAGGTGGTT+TGG | - | chr1_1:75688221-75688240 | None:intergenic | 40.0% | |
TGGTAGAAATTAGACTCAGG+TGG | - | chr1_1:75688226-75688245 | None:intergenic | 40.0% | |
ACGCAGAAAGGATCTTAAGA+GGG | - | chr1_1:75688310-75688329 | None:intergenic | 40.0% | |
GGTAACAACTCTCCTCATTA+TGG | - | chr1_1:75688559-75688578 | None:intergenic | 40.0% | |
TAATGAGGAGAGTTGTTACC+TGG | + | chr1_1:75688559-75688578 | Msa0044190:intron | 40.0% | |
GAGTTGTTACCTGGAATTCT+TGG | + | chr1_1:75688568-75688587 | Msa0044190:intron | 40.0% | |
AGCAAAGATCCAAGAATTCC+AGG | - | chr1_1:75688580-75688599 | None:intergenic | 40.0% | |
GAAGCAAGTTATGGAAGAGA+AGG | + | chr1_1:75688978-75688997 | Msa0044190:CDS | 40.0% | |
! | CGCGTTTGCAAAGCTTTTTA+TGG | + | chr1_1:75689469-75689488 | Msa0044190:three_prime_UTR | 40.0% |
TGGGTTTCAGAGTGTGATGT+GGG | - | chr1_1:75684405-75684424 | None:intergenic | 45.0% | |
ATGGGTTTCAGAGTGTGATG+TGG | - | chr1_1:75684406-75684425 | None:intergenic | 45.0% | |
AGAGAGAGAGAGAGTCCTTT+AGG | + | chr1_1:75684468-75684487 | Msa0044190:intron | 45.0% | |
! | ACTGCATAAAAATGGCGGAG+CGG | - | chr1_1:75684560-75684579 | None:intergenic | 45.0% |
!!! | GTCAACACTTTTTCTCCCGA+AGG | + | chr1_1:75684790-75684809 | Msa0044190:CDS | 45.0% |
ACCTGAAACAAACGTCCTTC+GGG | - | chr1_1:75684808-75684827 | None:intergenic | 45.0% | |
CTTGAAAACGAAAGAGGGTG+TGG | + | chr1_1:75684965-75684984 | Msa0044190:CDS | 45.0% | |
! | TAGGGCAGATTTTCATCGAG+GGG | + | chr1_1:75685068-75685087 | Msa0044190:intron | 45.0% |
! | TTTTCATCGAGGGGTAACCT+TGG | + | chr1_1:75685077-75685096 | Msa0044190:intron | 45.0% |
TCATGTGACTGTAAGGTCAC+AGG | + | chr1_1:75685120-75685139 | Msa0044190:intron | 45.0% | |
! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_1:75685153-75685172 | None:intergenic | 45.0% |
GCTGCGTACAATACACCAAA+TGG | + | chr1_1:75685185-75685204 | Msa0044190:intron | 45.0% | |
GCGTACAATACACCAAATGG+TGG | + | chr1_1:75685188-75685207 | Msa0044190:intron | 45.0% | |
! | TCATCCCTCTATCCCACTTT+TGG | + | chr1_1:75685542-75685561 | Msa0044190:intron | 45.0% |
!! | CATCCCTCTATCCCACTTTT+GGG | + | chr1_1:75685543-75685562 | Msa0044190:intron | 45.0% |
!! | ATCCCTCTATCCCACTTTTG+GGG | + | chr1_1:75685544-75685563 | Msa0044190:intron | 45.0% |
AACCCCAAAAGTGGGATAGA+GGG | - | chr1_1:75685549-75685568 | None:intergenic | 45.0% | |
GACTACGCACATGTTTGTCT+TGG | + | chr1_1:75685596-75685615 | Msa0044190:intron | 45.0% | |
TACGCACATGTTTGTCTTGG+TGG | + | chr1_1:75685599-75685618 | Msa0044190:intron | 45.0% | |
AAATGTCCACAAACTTGCGG+TGG | + | chr1_1:75685686-75685705 | Msa0044190:intron | 45.0% | |
AATGTCCACAAACTTGCGGT+GGG | + | chr1_1:75685687-75685706 | Msa0044190:intron | 45.0% | |
! | ACACGTTTGGATGTGCGTTT+TGG | - | chr1_1:75685718-75685737 | None:intergenic | 45.0% |
GGAAGGTGATGAAGAATCCA+TGG | + | chr1_1:75686182-75686201 | Msa0044190:CDS | 45.0% | |
AAGCGATCATGCAAGTTCAC+AGG | - | chr1_1:75686283-75686302 | None:intergenic | 45.0% | |
!! | AAAGAAGTGATGGGCGAAGA+TGG | - | chr1_1:75687041-75687060 | None:intergenic | 45.0% |
! | GGCACCTTTTGAACCATAAC+AGG | + | chr1_1:75687340-75687359 | Msa0044190:intron | 45.0% |
TTGGCATCTTACCCCCAATT+AGG | + | chr1_1:75687379-75687398 | Msa0044190:intron | 45.0% | |
! | CTGATCCTTCTGGCACATTT+TGG | + | chr1_1:75687647-75687666 | Msa0044190:CDS | 45.0% |
CATTGCCAAAATGTGCCAGA+AGG | - | chr1_1:75687655-75687674 | None:intergenic | 45.0% | |
!! | GCTATTGGTTCAGGATCAGA+AGG | + | chr1_1:75687685-75687704 | Msa0044190:CDS | 45.0% |
! | CATTTTCTCCACAGTTGGAG+AGG | - | chr1_1:75687871-75687890 | None:intergenic | 45.0% |
CTCTCCAACTGTGGAGAAAA+TGG | + | chr1_1:75687869-75687888 | Msa0044190:intron | 45.0% | |
CCACTTAGTGAGATAAGGCT+TGG | - | chr1_1:75688001-75688020 | None:intergenic | 45.0% | |
! | CCAAGCCTTATCTCACTAAG+TGG | + | chr1_1:75687998-75688017 | Msa0044190:intron | 45.0% |
CGACTCCACTTAGTGAGATA+AGG | - | chr1_1:75688006-75688025 | None:intergenic | 45.0% | |
GGAGTCAAATCACTAGAGGT+AGG | - | chr1_1:75688142-75688161 | None:intergenic | 45.0% | |
AGGAGAGTAGATCAGATGGA+GGG | - | chr1_1:75688164-75688183 | None:intergenic | 45.0% | |
AAGGAGAGTAGATCAGATGG+AGG | - | chr1_1:75688165-75688184 | None:intergenic | 45.0% | |
GCATGTAGAGAGAAGACCTA+TGG | - | chr1_1:75688198-75688217 | None:intergenic | 45.0% | |
CGCAGAAAGGATCTTAAGAG+GGG | - | chr1_1:75688309-75688328 | None:intergenic | 45.0% | |
GACGCAGAAAGGATCTTAAG+AGG | - | chr1_1:75688311-75688330 | None:intergenic | 45.0% | |
TTCTCCATTCTCTCCTCGAA+TGG | + | chr1_1:75688519-75688538 | Msa0044190:intron | 45.0% | |
GGCGAAACCCCAAAGAATTA+AGG | - | chr1_1:75688676-75688695 | None:intergenic | 45.0% | |
CTGGCAATGTCAACGTTGTT+GGG | - | chr1_1:75689101-75689120 | None:intergenic | 45.0% | |
CAACAACGTTGACATTGCCA+GGG | + | chr1_1:75689100-75689119 | Msa0044190:CDS | 45.0% | |
GGGGTATAAAGATGATACGC+TGG | - | chr1_1:75689131-75689150 | None:intergenic | 45.0% | |
TCATCTTTATACCCCGTCTG+AGG | + | chr1_1:75689136-75689155 | Msa0044190:CDS | 45.0% | |
!!! | TAATTTTTTTTTGTTAATTT+AGG | + | chr1_1:75685049-75685068 | Msa0044190:intron | 5.0% |
!!! | AATTTTTTTTTGTTAATTTA+GGG | + | chr1_1:75685050-75685069 | Msa0044190:intron | 5.0% |
! | TCTCTCTCTCGCTGGGTTTT+TGG | - | chr1_1:75684453-75684472 | None:intergenic | 50.0% |
! | CATAAAAATGGCGGAGCGGA+GGG | - | chr1_1:75684556-75684575 | None:intergenic | 50.0% |
TCCCGAAGGACGTTTGTTTC+AGG | + | chr1_1:75684804-75684823 | Msa0044190:CDS | 50.0% | |
CAGCTTGGATCAACTGCGAT+TGG | + | chr1_1:75684942-75684961 | Msa0044190:intron | 50.0% | |
GCGTATTACTTCGCCTCTAC+TGG | + | chr1_1:75685004-75685023 | Msa0044190:CDS | 50.0% | |
CAACTTTACCAGTTGCGCCA+AGG | - | chr1_1:75685097-75685116 | None:intergenic | 50.0% | |
AAGGTCACAGGTTCAAGTCC+TGG | + | chr1_1:75685132-75685151 | Msa0044190:intron | 50.0% | |
AAGGGCAAAAAAGGGCAACC+CGG | - | chr1_1:75685255-75685274 | None:intergenic | 50.0% | |
AAAATAGCGCCGCTATGGTG+AGG | + | chr1_1:75685425-75685444 | Msa0044190:intron | 50.0% | |
TCAGTTTAGCAGTGCGGAGT+GGG | + | chr1_1:75685476-75685495 | Msa0044190:intron | 50.0% | |
CAACCCCAAAAGTGGGATAG+AGG | - | chr1_1:75685550-75685569 | None:intergenic | 50.0% | |
GTCAATCCTGCATTGTGGTG+CGG | - | chr1_1:75685579-75685598 | None:intergenic | 50.0% | |
GCGTAGTCAATCCTGCATTG+TGG | - | chr1_1:75685584-75685603 | None:intergenic | 50.0% | |
GCACATGTTTGTCTTGGTGG+TGG | + | chr1_1:75685602-75685621 | Msa0044190:intron | 50.0% | |
ATGTCCACAAACTTGCGGTG+GGG | + | chr1_1:75685688-75685707 | Msa0044190:intron | 50.0% | |
! | CACATTGGCTGTGCAATGAG+TGG | + | chr1_1:75685929-75685948 | Msa0044190:CDS | 50.0% |
! | GCATGCACGAGTTGAAACTC+AGG | + | chr1_1:75685982-75686001 | Msa0044190:CDS | 50.0% |
CTTTGGCAGTCTCGACCATT+TGG | + | chr1_1:75686620-75686639 | Msa0044190:intron | 50.0% | |
! | GGAGTGTCTCTCCTTATTGC+TGG | + | chr1_1:75686641-75686660 | Msa0044190:CDS | 50.0% |
TCTCGTCATGGCCAGCAATA+AGG | - | chr1_1:75686655-75686674 | None:intergenic | 50.0% | |
ATTGCTGGCCATGACGAGAA+TGG | + | chr1_1:75686656-75686675 | Msa0044190:CDS | 50.0% | |
!! | CTGGACTATTGGTCTTGCTG+AGG | + | chr1_1:75687596-75687615 | Msa0044190:intron | 50.0% |
GAGGGGAGTCAAATCACTAG+AGG | - | chr1_1:75688146-75688165 | None:intergenic | 50.0% | |
GGAGAGTAGATCAGATGGAG+GGG | - | chr1_1:75688163-75688182 | None:intergenic | 50.0% | |
TATAGATGACGAACCCTCGC+TGG | + | chr1_1:75688280-75688299 | Msa0044190:intron | 50.0% | |
CTCTCCATTCGAGGAGAGAA+TGG | - | chr1_1:75688526-75688545 | None:intergenic | 50.0% | |
CATTCTCTCCTCGAATGGAG+AGG | + | chr1_1:75688524-75688543 | Msa0044190:intron | 50.0% | |
AGGATGCAGACCCCATAATG+AGG | + | chr1_1:75688544-75688563 | Msa0044190:intron | 50.0% | |
TCAGTAGGGGGACAAACAAC+TGG | - | chr1_1:75689032-75689051 | None:intergenic | 50.0% | |
CCTGGCAATGTCAACGTTGT+TGG | - | chr1_1:75689102-75689121 | None:intergenic | 50.0% | |
CCAACAACGTTGACATTGCC+AGG | + | chr1_1:75689099-75689118 | Msa0044190:CDS | 50.0% | |
TCTTTATACCCCGTCTGAGG+TGG | + | chr1_1:75689139-75689158 | Msa0044190:CDS | 50.0% | |
ATCACAGCTTCCACCTCAGA+CGG | - | chr1_1:75689152-75689171 | None:intergenic | 50.0% | |
CTCTCTCTCTCTCTCTCGCT+GGG | - | chr1_1:75684460-75684479 | None:intergenic | 55.0% | |
TCTCTCTCTCTCTCTCTCGC+TGG | - | chr1_1:75684461-75684480 | None:intergenic | 55.0% | |
GAGCGGAGGGTTGAGAAATC+GGG | - | chr1_1:75684543-75684562 | None:intergenic | 55.0% | |
GGAGCGGAGGGTTGAGAAAT+CGG | - | chr1_1:75684544-75684563 | None:intergenic | 55.0% | |
! | GCATAAAAATGGCGGAGCGG+AGG | - | chr1_1:75684557-75684576 | None:intergenic | 55.0% |
CTAAAGCTCCCGCATACGCA+GGG | - | chr1_1:75685228-75685247 | None:intergenic | 55.0% | |
ACTAAAGCTCCCGCATACGC+AGG | - | chr1_1:75685229-75685248 | None:intergenic | 55.0% | |
! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr1_1:75685233-75685252 | Msa0044190:intron | 55.0% |
AGCGCAAAATAGCGCCGCTA+TGG | + | chr1_1:75685420-75685439 | Msa0044190:intron | 55.0% | |
GTCAGTTTAGCAGTGCGGAG+TGG | + | chr1_1:75685475-75685494 | Msa0044190:intron | 55.0% | |
CAGTTTAGCAGTGCGGAGTG+GGG | + | chr1_1:75685477-75685496 | Msa0044190:intron | 55.0% | |
AGTTTAGCAGTGCGGAGTGG+GGG | + | chr1_1:75685478-75685497 | Msa0044190:intron | 55.0% | |
GAGCGGTCAACCCCAAAAGT+GGG | - | chr1_1:75685557-75685576 | None:intergenic | 55.0% | |
TGTCCACAAACTTGCGGTGG+GGG | + | chr1_1:75685689-75685708 | Msa0044190:intron | 55.0% | |
!! | TGTGACCTAGCCTTGCGCTT+TGG | + | chr1_1:75686159-75686178 | Msa0044190:CDS | 55.0% |
!! | GTGACCTAGCCTTGCGCTTT+GGG | + | chr1_1:75686160-75686179 | Msa0044190:CDS | 55.0% |
!! | TGACCTAGCCTTGCGCTTTG+GGG | + | chr1_1:75686161-75686180 | Msa0044190:CDS | 55.0% |
ATCACCTTCCCCAAAGCGCA+AGG | - | chr1_1:75686172-75686191 | None:intergenic | 55.0% | |
GGCTAGGTCCATTCTCGTCA+TGG | - | chr1_1:75686667-75686686 | None:intergenic | 55.0% | |
TTAAGAGGGGTGACCAGCGA+GGG | - | chr1_1:75688296-75688315 | None:intergenic | 55.0% | |
GTCTGCATCCTCTCCATTCG+AGG | - | chr1_1:75688535-75688554 | None:intergenic | 55.0% | |
ATGATACGCTGGAGCAACCC+TGG | - | chr1_1:75689120-75689139 | None:intergenic | 55.0% | |
TCACAGCTTCCACCTCAGAC+GGG | - | chr1_1:75689151-75689170 | None:intergenic | 55.0% | |
AGGGGTAACCTTGGCGCAAC+TGG | + | chr1_1:75685086-75685105 | Msa0044190:intron | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_1:75685201-75685220 | Msa0044190:intron | 60.0% |
! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr1_1:75685234-75685253 | Msa0044190:intron | 60.0% |
GGAGCGGTCAACCCCAAAAG+TGG | - | chr1_1:75685558-75685577 | None:intergenic | 60.0% | |
TCCTGCATTGTGGTGCGGAG+CGG | - | chr1_1:75685574-75685593 | None:intergenic | 60.0% | |
TCACCCCCACCGCAAGTTTG+TGG | - | chr1_1:75685695-75685714 | None:intergenic | 60.0% | |
CACTGCTGGGCTCCTGAAAG+TGG | - | chr1_1:75685883-75685902 | None:intergenic | 60.0% | |
CTTTCAGGAGCCCAGCAGTG+TGG | + | chr1_1:75685883-75685902 | Msa0044190:intron | 60.0% | |
CTTCCCCAAAGCGCAAGGCT+AGG | - | chr1_1:75686167-75686186 | None:intergenic | 60.0% | |
!! | CTAGCCTTGCGCTTTGGGGA+AGG | + | chr1_1:75686165-75686184 | Msa0044190:CDS | 60.0% |
GTCCAGCTCCTCTCCAACTG+TGG | + | chr1_1:75687860-75687879 | Msa0044190:intron | 60.0% | |
CTCCACAGTTGGAGAGGAGC+TGG | - | chr1_1:75687865-75687884 | None:intergenic | 60.0% | |
CTTAAGAGGGGTGACCAGCG+AGG | - | chr1_1:75688297-75688316 | None:intergenic | 60.0% | |
CACAGCTTCCACCTCAGACG+GGG | - | chr1_1:75689150-75689169 | None:intergenic | 60.0% | |
CGGGAAGGGGTCCCACCATT+TGG | - | chr1_1:75685203-75685222 | None:intergenic | 65.0% | |
CATACGCAGGGTCCGGGAAG+GGG | - | chr1_1:75685216-75685235 | None:intergenic | 65.0% | |
GCATACGCAGGGTCCGGGAA+GGG | - | chr1_1:75685217-75685236 | None:intergenic | 65.0% | |
CTTCCCGGACCCTGCGTATG+CGG | + | chr1_1:75685216-75685235 | Msa0044190:intron | 65.0% | |
TTCCCGGACCCTGCGTATGC+GGG | + | chr1_1:75685217-75685236 | Msa0044190:intron | 65.0% | |
ACCGCTCCGCACCACAATGC+AGG | + | chr1_1:75685570-75685589 | Msa0044190:intron | 65.0% | |
CGCATACGCAGGGTCCGGGA+AGG | - | chr1_1:75685218-75685237 | None:intergenic | 70.0% | |
CTCCCGCATACGCAGGGTCC+GGG | - | chr1_1:75685222-75685241 | None:intergenic | 70.0% | |
GCTCCCGCATACGCAGGGTC+CGG | - | chr1_1:75685223-75685242 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 75684374 | 75689578 | 75684374 | ID=Msa0044190;Name=Msa0044190 |
chr1_1 | mRNA | 75684374 | 75689578 | 75684374 | ID=Msa0044190-mRNA-1;Parent=Msa0044190;Name=Msa0044190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|1|1|1|0.8|0.72|11|394|237 |
chr1_1 | exon | 75684374 | 75684397 | 75684374 | ID=Msa0044190-mRNA-1:exon:25503;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75684418 | 75684468 | 75684418 | ID=Msa0044190-mRNA-1:exon:25504;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75684569 | 75684629 | 75684569 | ID=Msa0044190-mRNA-1:exon:25505;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75684771 | 75684852 | 75684771 | ID=Msa0044190-mRNA-1:exon:25506;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75684945 | 75685025 | 75684945 | ID=Msa0044190-mRNA-1:exon:25507;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75685890 | 75686003 | 75685890 | ID=Msa0044190-mRNA-1:exon:25508;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75686102 | 75686203 | 75686102 | ID=Msa0044190-mRNA-1:exon:25509;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75686629 | 75686687 | 75686629 | ID=Msa0044190-mRNA-1:exon:25510;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75687639 | 75687741 | 75687639 | ID=Msa0044190-mRNA-1:exon:25511;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75688934 | 75688999 | 75688934 | ID=Msa0044190-mRNA-1:exon:25512;Parent=Msa0044190-mRNA-1 |
chr1_1 | exon | 75689092 | 75689578 | 75689092 | ID=Msa0044190-mRNA-1:exon:25513;Parent=Msa0044190-mRNA-1 |
chr1_1 | five_prime_UTR | 75684374 | 75684397 | 75684374 | ID=Msa0044190-mRNA-1:five_prime_utr;Parent=Msa0044190-mRNA-1 |
chr1_1 | five_prime_UTR | 75684418 | 75684468 | 75684418 | ID=Msa0044190-mRNA-1:five_prime_utr;Parent=Msa0044190-mRNA-1 |
chr1_1 | five_prime_UTR | 75684569 | 75684615 | 75684569 | ID=Msa0044190-mRNA-1:five_prime_utr;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75684616 | 75684629 | 75684616 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75684771 | 75684852 | 75684771 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75684945 | 75685025 | 75684945 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75685890 | 75686003 | 75685890 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75686102 | 75686203 | 75686102 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75686629 | 75686687 | 75686629 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75687639 | 75687741 | 75687639 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75688934 | 75688999 | 75688934 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | CDS | 75689092 | 75689184 | 75689092 | ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1 |
chr1_1 | three_prime_UTR | 75689185 | 75689578 | 75689185 | ID=Msa0044190-mRNA-1:three_prime_utr;Parent=Msa0044190-mRNA-1 |
Gene Sequence |
Protein sequence |