AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044190 MtrunA17_Chr1g0210811 100.000 237 0 0 1 237 1 237 5.53e-179 490
Msa0044190 MtrunA17_Chr6g0453891 62.150 214 64 5 31 237 133 336 4.60e-75 230
Msa0044190 MtrunA17_Chr7g0243311 45.161 217 107 5 8 218 5 215 2.41e-58 185
Msa0044190 MtrunA17_Chr5g0401801 44.550 211 109 4 8 213 5 212 7.15e-55 175
Msa0044190 MtrunA17_Chr2g0283841 40.343 233 129 5 6 234 2 228 1.22e-50 165
Msa0044190 MtrunA17_Chr8g0371571 41.593 226 124 4 8 231 4 223 1.36e-50 165
Msa0044190 MtrunA17_Chr0c02g0489661 35.526 228 142 2 6 231 4 228 1.46e-47 157
Msa0044190 MtrunA17_Chr1g0155371 46.154 182 93 2 3 184 1 177 2.95e-47 157
Msa0044190 MtrunA17_Chr8g0360781 34.199 231 142 5 8 231 9 236 1.43e-40 139
Msa0044190 MtrunA17_Chr2g0308541 32.900 231 145 5 8 231 9 236 7.38e-39 135
Msa0044190 MtrunA17_Chr6g0459741 34.783 207 120 2 6 206 6 203 3.31e-38 133
Msa0044190 MtrunA17_Chr4g0004521 37.143 175 91 4 22 185 7 173 3.55e-26 102
Msa0044190 MtrunA17_Chr4g0027841 34.239 184 97 7 11 184 91 260 5.53e-18 81.3
Msa0044190 MtrunA17_Chr3g0116161 28.313 166 107 3 34 196 54 210 8.94e-15 71.6
Msa0044190 MtrunA17_Chr5g0394931 30.464 151 94 3 45 192 13 155 7.56e-13 65.5
Msa0044190 MtrunA17_Chr5g0399161 28.249 177 114 4 42 213 10 178 9.02e-13 65.1
Msa0044190 MtrunA17_Chr7g0228681 24.873 197 138 4 31 225 35 223 5.86e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044190 AT3G14290.1 97.468 237 6 0 1 237 1 237 1.15e-175 482
Msa0044190 AT1G53850.1 97.046 237 7 0 1 237 1 237 3.52e-175 481
Msa0044190 AT1G53850.2 97.046 237 7 0 1 237 1 237 3.52e-175 481
Msa0044190 AT3G22110.1 41.494 241 123 7 8 236 5 239 1.13e-56 181
Msa0044190 AT5G66140.1 43.000 200 108 3 8 205 4 199 6.01e-48 159
Msa0044190 AT1G16470.1 35.088 228 143 2 6 231 4 228 1.54e-47 157
Msa0044190 AT1G16470.2 35.088 228 143 2 6 231 4 228 1.54e-47 157
Msa0044190 AT3G51260.2 41.038 212 117 4 7 216 3 208 1.62e-47 157
Msa0044190 AT1G79210.1 34.188 234 149 2 6 237 4 234 1.66e-47 157
Msa0044190 AT1G79210.2 34.188 234 149 2 6 237 4 234 1.66e-47 157
Msa0044190 AT1G79210.3 34.188 234 149 2 6 237 4 234 1.66e-47 157
Msa0044190 AT3G51260.1 42.500 200 109 3 8 205 4 199 2.64e-47 157
Msa0044190 AT5G42790.1 39.506 243 125 4 3 234 1 232 1.98e-46 155
Msa0044190 AT1G47250.1 45.856 181 93 2 3 183 1 176 3.04e-46 155
Msa0044190 AT5G35590.1 35.498 231 139 5 8 231 9 236 2.85e-41 141
Msa0044190 AT2G27020.1 33.333 207 123 2 6 206 6 203 5.72e-38 133
Msa0044190 AT2G05840.2 34.434 212 132 4 8 215 9 217 2.10e-37 130
Msa0044190 AT2G05840.1 34.419 215 134 4 8 218 9 220 2.79e-37 131
Msa0044190 AT2G27020.2 33.333 207 123 2 6 206 108 305 8.48e-37 132
Msa0044190 AT4G15165.1 31.535 241 105 6 8 236 5 197 3.82e-35 124
Msa0044190 AT2G05840.3 35.263 190 118 3 8 195 9 195 6.10e-35 124
Msa0044190 AT3G26340.1 26.500 200 132 5 27 220 48 238 7.75e-15 72.4
Msa0044190 AT1G13060.1 25.654 191 129 4 34 220 57 238 1.07e-13 69.3
Msa0044190 AT4G14800.1 28.652 178 115 4 45 218 13 182 2.99e-12 63.9
Msa0044190 AT5G40580.1 25.616 203 141 3 31 231 36 230 3.91e-12 64.7
Msa0044190 AT5G40580.2 25.616 203 141 3 31 231 36 230 3.91e-12 64.7
Msa0044190 AT3G27430.2 26.108 203 140 3 31 231 36 230 7.44e-12 63.9
Msa0044190 AT4G14800.2 28.495 186 121 4 45 218 13 198 7.59e-12 63.2
Msa0044190 AT3G27430.1 26.108 203 140 3 31 231 36 230 9.28e-12 63.5

Find 64 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTTCTGGCACATTT+TGG 0.189061 1_1:+75687647 Msa0044190:CDS
TCCCGAAGGACGTTTGTTTC+AGG 0.228080 1_1:+75684804 Msa0044190:CDS
GTGACCTAGCCTTGCGCTTT+GGG 0.251856 1_1:+75686160 Msa0044190:CDS
ATATGCAATTGAAGCTATTA+AGG 0.287746 1_1:+75684831 Msa0044190:CDS
CTTTGGCAGTCTCGACCATT+TGG 0.312188 1_1:+75686620 Msa0044190:intron
TAAAATAGTATCACAGCGTT+TGG 0.327818 1_1:+75689332 Msa0044190:three_prime_UTR
AGACTGAATATCAGAAAATA+TGG 0.331191 1_1:-75689293 None:intergenic
GGAGTGTCTCTCCTTATTGC+TGG 0.335194 1_1:+75686641 Msa0044190:CDS
TGTGACCTAGCCTTGCGCTT+TGG 0.345737 1_1:+75686159 Msa0044190:CDS
CAGAATCACAGGTTCTCTTA+TGG 0.347192 1_1:+75686099 Msa0044190:intron
CAATGCAATGCAAAGGCTAT+TGG 0.347609 1_1:+75687670 Msa0044190:CDS
TCTCGTCATGGCCAGCAATA+AGG 0.348529 1_1:-75686652 None:intergenic
AATCAAATCACGCAAATAGA+TGG 0.363237 1_1:-75689188 None:intergenic
CAGCAGTGTGGAGAAAATTA+TGG 0.366170 1_1:+75685895 Msa0044190:CDS
ATCAATTCTGAAGCAAGTTA+TGG 0.388035 1_1:+75688969 Msa0044190:CDS
AACCTGAAACAAACGTCCTT+CGG 0.394934 1_1:-75684806 None:intergenic
TTGGTTTGATTTGATTTGAA+TGG 0.405827 1_1:-75684592 None:intergenic
CCAACAACGTTGACATTGCC+AGG 0.408754 1_1:+75689099 Msa0044190:CDS
ACCTGAAACAAACGTCCTTC+GGG 0.423347 1_1:-75684805 None:intergenic
CCTGGCAATGTCAACGTTGT+TGG 0.426746 1_1:-75689099 None:intergenic
CAGCTTGGATCAACTGCGAT+TGG 0.442542 1_1:+75684942 Msa0044190:intron
AAAATAGTATCACAGCGTTT+GGG 0.453345 1_1:+75689333 Msa0044190:three_prime_UTR
CTGGCAATGTCAACGTTGTT+GGG 0.454160 1_1:-75689098 None:intergenic
GCGTATTACTTCGCCTCTAC+TGG 0.457074 1_1:+75685004 Msa0044190:CDS
AGATATTACACTGATCCTTC+TGG 0.466365 1_1:+75687637 Msa0044190:intron
CGCAAATAGATGGAAATCAT+AGG 0.479822 1_1:-75689178 None:intergenic
AATGCAAAGGCTATTGGTTC+AGG 0.500036 1_1:+75687676 Msa0044190:CDS
CTAGCCTTGCGCTTTGGGGA+AGG 0.509941 1_1:+75686165 Msa0044190:CDS
ATTGCTGGCCATGACGAGAA+TGG 0.514622 1_1:+75686656 Msa0044190:CDS
TATATTATCGAGTGTGGAGA+TGG 0.521151 1_1:+75689443 Msa0044190:three_prime_UTR
GGAATATATACTTACAGGCT+AGG 0.527284 1_1:-75686680 None:intergenic
ATCACAGCTTCCACCTCAGA+CGG 0.535599 1_1:-75689149 None:intergenic
TCACAGCTTCCACCTCAGAC+GGG 0.536535 1_1:-75689148 None:intergenic
TCTTTATACCCCGTCTGAGG+TGG 0.544181 1_1:+75689139 Msa0044190:CDS
CTTGAAAACGAAAGAGGGTG+TGG 0.545014 1_1:+75684965 Msa0044190:CDS
ATGATACGCTGGAGCAACCC+TGG 0.548475 1_1:-75689117 None:intergenic
TGAATATCAGAAAATATGGT+AGG 0.556483 1_1:-75689289 None:intergenic
CTTCCCCAAAGCGCAAGGCT+AGG 0.558153 1_1:-75686164 None:intergenic
ATCTAGTATTGCATACAACT+TGG 0.561296 1_1:-75689263 None:intergenic
TAACCTTGTGAGAAACATGT+TGG 0.566164 1_1:-75684611 None:intergenic
GAAGCAAGTTATGGAAGAGA+AGG 0.568369 1_1:+75688978 Msa0044190:CDS
GGCTAGGTCCATTCTCGTCA+TGG 0.580425 1_1:-75686664 None:intergenic
ATAAGGAGAGACACTCCAAA+TGG 0.589626 1_1:-75686635 None:intergenic
TGACCTAGCCTTGCGCTTTG+GGG 0.590485 1_1:+75686161 Msa0044190:CDS
ATCACCTTCCCCAAAGCGCA+AGG 0.591699 1_1:-75686169 None:intergenic
GCTATTGGTTCAGGATCAGA+AGG 0.597231 1_1:+75687685 Msa0044190:CDS
GGAAGGTGATGAAGAATCCA+TGG 0.599188 1_1:+75686182 Msa0044190:CDS
CTAGTATATATTATCGAGTG+TGG 0.602194 1_1:+75689437 Msa0044190:three_prime_UTR
GTTGTAGACTCTACAGTCAT+CGG 0.602200 1_1:-75686126 None:intergenic
CACATTGGCTGTGCAATGAG+TGG 0.606594 1_1:+75685929 Msa0044190:CDS
GATTGGCTTGAAAACGAAAG+AGG 0.610207 1_1:+75684959 Msa0044190:CDS
CATTGCCAAAATGTGCCAGA+AGG 0.618837 1_1:-75687652 None:intergenic
AAACCAACATGTTTCTCACA+AGG 0.620638 1_1:+75684608 Msa0044190:exon
ATGGAAATTGATGATCACAT+TGG 0.621320 1_1:+75685914 Msa0044190:CDS
GAATAGGTACATACCAGTAG+AGG 0.625077 1_1:-75685017 None:intergenic
ATTGGCTTGAAAACGAAAGA+GGG 0.626167 1_1:+75684960 Msa0044190:CDS
TCATCTTTATACCCCGTCTG+AGG 0.634475 1_1:+75689136 Msa0044190:CDS
CAACAACGTTGACATTGCCA+GGG 0.635659 1_1:+75689100 Msa0044190:CDS
CACAGCTTCCACCTCAGACG+GGG 0.645540 1_1:-75689147 None:intergenic
GGGGTATAAAGATGATACGC+TGG 0.658506 1_1:-75689128 None:intergenic
GCATGCACGAGTTGAAACTC+AGG 0.662565 1_1:+75685982 Msa0044190:CDS
CTTTCAGGAGCCCAGCAGTG+TGG 0.675944 1_1:+75685883 Msa0044190:intron
ATTAGAACTGAGTATGACCG+TGG 0.689159 1_1:+75684766 Msa0044190:intron
TCTGCAAGAACAATTCAACA+AGG 0.713271 1_1:+75687720 Msa0044190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTAATTTTTTTTTTTTGT+TGG + chr1_1:75684915-75684934 Msa0044190:intron 10.0%
!! CAAAAAAAAATTACATAAAA+GGG - chr1_1:75685042-75685061 None:intergenic 10.0%
!! ACAAAAAAAAATTACATAAA+AGG - chr1_1:75685043-75685062 None:intergenic 10.0%
!!! TTTAGAATAAATTGAATTAT+GGG + chr1_1:75685362-75685381 Msa0044190:intron 10.0%
!!! TTTATAATTTAAAATGTTGT+TGG + chr1_1:75688800-75688819 Msa0044190:intron 10.0%
!! AATTCAATCATAAAAAAATT+AGG + chr1_1:75689494-75689513 Msa0044190:three_prime_UTR 10.0%
!! ATTCAATCATAAAAAAATTA+GGG + chr1_1:75689495-75689514 Msa0044190:three_prime_UTR 10.0%
!!! GTTTAGAATAAATTGAATTA+TGG + chr1_1:75685361-75685380 Msa0044190:intron 15.0%
!! TTAGAATAAATTGAATTATG+GGG + chr1_1:75685363-75685382 Msa0044190:intron 15.0%
!!! ATATTGATATTGATCTATTT+TGG + chr1_1:75686065-75686084 Msa0044190:intron 15.0%
!!! TTTTTTTATTAGTGTACAAA+TGG + chr1_1:75686488-75686507 Msa0044190:intron 15.0%
!!! TTTTTTATTAGTGTACAAAT+GGG + chr1_1:75686489-75686508 Msa0044190:intron 15.0%
!!! CTTTCTTATTATTTCTTTAA+TGG + chr1_1:75687140-75687159 Msa0044190:intron 15.0%
!! ATATCATTAAAATTATTAGC+TGG + chr1_1:75687796-75687815 Msa0044190:intron 15.0%
!! TATCATTAAAATTATTAGCT+GGG + chr1_1:75687797-75687816 Msa0044190:intron 15.0%
!! TATTAATTACCTTAATTCTT+TGG + chr1_1:75688664-75688683 Msa0044190:intron 15.0%
!! ATTAATTACCTTAATTCTTT+GGG + chr1_1:75688665-75688684 Msa0044190:intron 15.0%
!! AGTAAAAATATATAATAGCA+CGG - chr1_1:75689402-75689421 None:intergenic 15.0%
!! ACAAAAATCCTAATACATTT+GGG - chr1_1:75684712-75684731 None:intergenic 20.0%
!! AACAAAAATCCTAATACATT+TGG - chr1_1:75684713-75684732 None:intergenic 20.0%
!! ACCCTAATAATAATAATAGA+GGG - chr1_1:75684864-75684883 None:intergenic 20.0%
!! AACCCTAATAATAATAATAG+AGG - chr1_1:75684865-75684884 None:intergenic 20.0%
!! AAAATTACATAAAAGGGAAT+AGG - chr1_1:75685036-75685055 None:intergenic 20.0%
!! AATAAATATGACTATAAGCA+CGG - chr1_1:75685806-75685825 None:intergenic 20.0%
!! AAATTGTAATGTATGTTTCA+TGG - chr1_1:75685848-75685867 None:intergenic 20.0%
!!! CAACAATAGATTTTAAGTTT+AGG - chr1_1:75686417-75686436 None:intergenic 20.0%
!! CTAAACTTAAAATCTATTGT+TGG + chr1_1:75686415-75686434 Msa0044190:intron 20.0%
!! ATATTAAACATTCCTATGAA+AGG + chr1_1:75686438-75686457 Msa0044190:intron 20.0%
!! ATAAAAAAACACCTTACAAA+AGG - chr1_1:75686477-75686496 None:intergenic 20.0%
!!! TACCATTTATTTTTTCTCTT+TGG + chr1_1:75686603-75686622 Msa0044190:intron 20.0%
!! ATTAGTTAAATTACAGAGAA+AGG + chr1_1:75686844-75686863 Msa0044190:intron 20.0%
!! ATGTTAAAACATTTCTAAAC+CGG + chr1_1:75686943-75686962 Msa0044190:intron 20.0%
!! AACAAAAATGAGAAAATTAC+AGG - chr1_1:75686992-75687011 None:intergenic 20.0%
!! ATAAAAAAGAAAGAAGTGAT+GGG - chr1_1:75687050-75687069 None:intergenic 20.0%
!! AATAAAAAAGAAAGAAGTGA+TGG - chr1_1:75687051-75687070 None:intergenic 20.0%
!!! ATTTATTTCCTTTTTCATTC+TGG + chr1_1:75687577-75687596 Msa0044190:intron 20.0%
!! TGTTAAATAGATACACAAAA+TGG + chr1_1:75688494-75688513 Msa0044190:intron 20.0%
!! TTAATTACCTTAATTCTTTG+GGG + chr1_1:75688666-75688685 Msa0044190:intron 20.0%
!! AAGAGTTGAATATGATTTAT+AGG - chr1_1:75688697-75688716 None:intergenic 20.0%
!!! AGAATATCAATATGATTTGT+AGG - chr1_1:75688721-75688740 None:intergenic 20.0%
!! TCATAAAAAAATTAGGGTAA+AGG + chr1_1:75689501-75689520 Msa0044190:three_prime_UTR 20.0%
!! CATAAAAAAATTAGGGTAAA+GGG + chr1_1:75689502-75689521 Msa0044190:three_prime_UTR 20.0%
! ATTGGAAAAAAGTTACCTAA+AGG - chr1_1:75684486-75684505 None:intergenic 25.0%
!!! TTGGTTTGATTTGATTTGAA+TGG - chr1_1:75684595-75684614 None:intergenic 25.0%
!! TAATTTTCCCCAAATGTATT+AGG + chr1_1:75684701-75684720 Msa0044190:intron 25.0%
! CAAAAATCCTAATACATTTG+GGG - chr1_1:75684711-75684730 None:intergenic 25.0%
!!! GTATTAGGATTTTTGTTTCT+AGG + chr1_1:75684716-75684735 Msa0044190:intron 25.0%
! ATATGCAATTGAAGCTATTA+AGG + chr1_1:75684831-75684850 Msa0044190:CDS 25.0%
! TGCCCTCTATTATTATTATT+AGG + chr1_1:75684859-75684878 Msa0044190:intron 25.0%
! GCCCTCTATTATTATTATTA+GGG + chr1_1:75684860-75684879 Msa0044190:intron 25.0%
!!! GGTTTTTAACTATCTGTATT+CGG + chr1_1:75684881-75684900 Msa0044190:intron 25.0%
!!! GTTTTTAACTATCTGTATTC+GGG + chr1_1:75684882-75684901 Msa0044190:intron 25.0%
!! TCAGAATTACATCTAAAACT+GGG - chr1_1:75685745-75685764 None:intergenic 25.0%
!! TTCAGAATTACATCTAAAAC+TGG - chr1_1:75685746-75685765 None:intergenic 25.0%
! AATAGAATGTTGTATGTAGT+TGG + chr1_1:75686022-75686041 Msa0044190:intron 25.0%
!!! TTTATTTTTCACAGAATCAC+AGG + chr1_1:75686088-75686107 Msa0044190:intron 25.0%
! TGCATATTCTGAATGTTTAA+TGG + chr1_1:75686344-75686363 Msa0044190:intron 25.0%
! TTGTAAAAGATACTTACTAG+TGG + chr1_1:75686544-75686563 Msa0044190:intron 25.0%
! TGCCAAAGAGAAAAAATAAA+TGG - chr1_1:75686608-75686627 None:intergenic 25.0%
! TAGATGGAATATATACTTAC+AGG - chr1_1:75686688-75686707 None:intergenic 25.0%
!! AAAAGAAAGTGTAACATACA+AGG - chr1_1:75686818-75686837 None:intergenic 25.0%
!! TATGTTACACTTTCTTTTCT+GGG + chr1_1:75686820-75686839 Msa0044190:intron 25.0%
! AAATTCTTGTCAAATATGTC+CGG - chr1_1:75686965-75686984 None:intergenic 25.0%
!!! TTTCTCATTTTTGTTTCACT+TGG + chr1_1:75686997-75687016 Msa0044190:intron 25.0%
!!! TTCACAAATACTTTTGAGAA+AGG - chr1_1:75687081-75687100 None:intergenic 25.0%
!!! TATTTTGATTTTGTAGGATC+AGG + chr1_1:75687500-75687519 Msa0044190:intron 25.0%
! ATTAAAATTATTAGCTGGGA+TGG + chr1_1:75687801-75687820 Msa0044190:intron 25.0%
!! TGTTATTTGCAACAGTATTA+AGG - chr1_1:75688639-75688658 None:intergenic 25.0%
! AGACAAAAATATACAAGAGA+TGG - chr1_1:75688755-75688774 None:intergenic 25.0%
!!! ATCTCTTGTATATTTTTGTC+TGG + chr1_1:75688754-75688773 Msa0044190:intron 25.0%
! TTGCTTAAAGATTATCTTTC+AGG + chr1_1:75688849-75688868 Msa0044190:intron 25.0%
!! ATTGATTTATTATGTTGTGC+AGG + chr1_1:75688912-75688931 Msa0044190:intron 25.0%
! TTAGAATATATTCTCAGTAG+GGG - chr1_1:75689045-75689064 None:intergenic 25.0%
! GTTAGAATATATTCTCAGTA+GGG - chr1_1:75689046-75689065 None:intergenic 25.0%
! AGTTAGAATATATTCTCAGT+AGG - chr1_1:75689047-75689066 None:intergenic 25.0%
! TGAATATCAGAAAATATGGT+AGG - chr1_1:75689292-75689311 None:intergenic 25.0%
! AGACTGAATATCAGAAAATA+TGG - chr1_1:75689296-75689315 None:intergenic 25.0%
AGAAGAAGAAGAAGAGAAAA+GGG - chr1_1:75684515-75684534 None:intergenic 30.0%
AAGAAGAAGAAGAAGAGAAA+AGG - chr1_1:75684516-75684535 None:intergenic 30.0%
GATAGATCACTGCATAAAAA+TGG - chr1_1:75684568-75684587 None:intergenic 30.0%
TAAAAGAGTGAGAGAGAAAA+GGG - chr1_1:75684639-75684658 None:intergenic 30.0%
ATAAAAGAGTGAGAGAGAAA+AGG - chr1_1:75684640-75684659 None:intergenic 30.0%
! TTTTCTCTCTCACTCTTTTA+TGG + chr1_1:75684639-75684658 Msa0044190:intron 30.0%
!!! TTTTTTGTTGGATTTCAGCT+TGG + chr1_1:75684927-75684946 Msa0044190:intron 30.0%
ATGAAAATCTGCCCTAAAAA+GGG - chr1_1:75685273-75685292 None:intergenic 30.0%
! CACGCATATTTTTCTTACTT+GGG - chr1_1:75685310-75685329 None:intergenic 30.0%
AATTGAATTATGGGGATATC+TGG + chr1_1:75685371-75685390 Msa0044190:intron 30.0%
! ACTGCTGTTTGATAATTTGT+TGG - chr1_1:75685523-75685542 None:intergenic 30.0%
TGTGTTAAAATTCCACTTTC+AGG + chr1_1:75685868-75685887 Msa0044190:intron 30.0%
! ATGGAAATTGATGATCACAT+TGG + chr1_1:75685914-75685933 Msa0044190:CDS 30.0%
AGCTAAGAAGTTATATACCA+TGG - chr1_1:75686202-75686221 None:intergenic 30.0%
TATATATTCCATCTAAGCCA+TGG + chr1_1:75686693-75686712 Msa0044190:intron 30.0%
AACACAGAAAATGAGTCAAA+AGG - chr1_1:75686747-75686766 None:intergenic 30.0%
! GTATGTTACACTTTCTTTTC+TGG + chr1_1:75686819-75686838 Msa0044190:intron 30.0%
! ATGTTACACTTTCTTTTCTG+GGG + chr1_1:75686821-75686840 Msa0044190:intron 30.0%
! GAAATAATAAGAAAGAGTGC+AGG - chr1_1:75687135-75687154 None:intergenic 30.0%
! GAGAATGATGCTATAGTTTT+AGG + chr1_1:75687169-75687188 Msa0044190:intron 30.0%
! GTAAATACATCTTTTCTGTG+CGG + chr1_1:75687225-75687244 Msa0044190:intron 30.0%
TTCTTGTTCAAACTAGTTCA+TGG + chr1_1:75687308-75687327 Msa0044190:intron 30.0%
TTGAGTCTCAAATCCTAATT+GGG - chr1_1:75687395-75687414 None:intergenic 30.0%
ATTGAGTCTCAAATCCTAAT+TGG - chr1_1:75687396-75687415 None:intergenic 30.0%
!! TGCATTAATTTGTCTGTGAT+GGG - chr1_1:75687442-75687461 None:intergenic 30.0%
AGAAAATAATTGCACAGCAT+GGG + chr1_1:75687477-75687496 Msa0044190:intron 30.0%
!!! CATGGGTATTTTGATTTTGT+AGG + chr1_1:75687494-75687513 Msa0044190:intron 30.0%
!! GGTTTTTCAATAGAACATCA+TGG - chr1_1:75688049-75688068 None:intergenic 30.0%
CTATAAGGAGACTATTAAGA+AGG - chr1_1:75688103-75688122 None:intergenic 30.0%
! AGTCTCCTTATAGTTTTTCT+AGG + chr1_1:75688110-75688129 Msa0044190:intron 30.0%
GAAGACCTAGAAAAACTATA+AGG - chr1_1:75688118-75688137 None:intergenic 30.0%
TTCTACCATCTTTCTACTAT+AGG + chr1_1:75688238-75688257 Msa0044190:intron 30.0%
TCATCTATAGTAGAAAGATG+GGG - chr1_1:75688269-75688288 None:intergenic 30.0%
GTCATCTATAGTAGAAAGAT+GGG - chr1_1:75688270-75688289 None:intergenic 30.0%
! AAATTCTTTTAGACGCAGAA+AGG - chr1_1:75688322-75688341 None:intergenic 30.0%
TTTCTGCGTCTAAAAGAATT+TGG + chr1_1:75688321-75688340 Msa0044190:intron 30.0%
TTCTGCGTCTAAAAGAATTT+GGG + chr1_1:75688322-75688341 Msa0044190:intron 30.0%
AAAAGAATTTGGGCTCTATT+TGG + chr1_1:75688332-75688351 Msa0044190:intron 30.0%
TCTCCATTTCTCAAAACAAA+TGG - chr1_1:75688463-75688482 None:intergenic 30.0%
AAGATTATCTTTCAGGATAG+AGG + chr1_1:75688856-75688875 Msa0044190:intron 30.0%
GACATGAAAACAAGTGAATT+TGG + chr1_1:75688888-75688907 Msa0044190:intron 30.0%
!! ATCAATTCTGAAGCAAGTTA+TGG + chr1_1:75688969-75688988 Msa0044190:CDS 30.0%
TAGAATATATTCTCAGTAGG+GGG - chr1_1:75689044-75689063 None:intergenic 30.0%
TTCTTCTGTACTTTCACATT+AGG + chr1_1:75689070-75689089 Msa0044190:intron 30.0%
AATCAAATCACGCAAATAGA+TGG - chr1_1:75689191-75689210 None:intergenic 30.0%
ATCTAGTATTGCATACAACT+TGG - chr1_1:75689266-75689285 None:intergenic 30.0%
TAAAATAGTATCACAGCGTT+TGG + chr1_1:75689332-75689351 Msa0044190:three_prime_UTR 30.0%
AAAATAGTATCACAGCGTTT+GGG + chr1_1:75689333-75689352 Msa0044190:three_prime_UTR 30.0%
CTAGTATATATTATCGAGTG+TGG + chr1_1:75689437-75689456 Msa0044190:three_prime_UTR 30.0%
AGATCACTGCATAAAAATGG+CGG - chr1_1:75684565-75684584 None:intergenic 35.0%
AAACCAACATGTTTCTCACA+AGG + chr1_1:75684608-75684627 Msa0044190:exon 35.0%
TAACCTTGTGAGAAACATGT+TGG - chr1_1:75684614-75684633 None:intergenic 35.0%
TTAACTATCTGTATTCGGGT+TGG + chr1_1:75684886-75684905 Msa0044190:intron 35.0%
!! ATTGGCTTGAAAACGAAAGA+GGG + chr1_1:75684960-75684979 Msa0044190:CDS 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr1_1:75685164-75685183 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr1_1:75685163-75685182 Msa0044190:intron 35.0%
GATGAAAATCTGCCCTAAAA+AGG - chr1_1:75685274-75685293 None:intergenic 35.0%
! GCACGCATATTTTTCTTACT+TGG - chr1_1:75685311-75685330 None:intergenic 35.0%
CATTATTAACCTCACCATAG+CGG - chr1_1:75685437-75685456 None:intergenic 35.0%
AAGTTTGTGGACATTTCACA+TGG - chr1_1:75685682-75685701 None:intergenic 35.0%
AAAACTGGGTATAACACGTT+TGG - chr1_1:75685731-75685750 None:intergenic 35.0%
! ATAATTTTCTCCACACTGCT+GGG - chr1_1:75685896-75685915 None:intergenic 35.0%
TGCTTACAGTGCTTTCTTTA+AGG + chr1_1:75686250-75686269 Msa0044190:intron 35.0%
TTCAGAATATGCAACACACA+AGG - chr1_1:75686337-75686356 None:intergenic 35.0%
!! ATACTTACTAGTGGTGTTGT+TGG + chr1_1:75686553-75686572 Msa0044190:intron 35.0%
GGAATATATACTTACAGGCT+AGG - chr1_1:75686683-75686702 None:intergenic 35.0%
GTGTAACATACAAGGAACAA+CGG - chr1_1:75686810-75686829 None:intergenic 35.0%
AATTACAGAGAAAGGACATG+TGG + chr1_1:75686852-75686871 Msa0044190:intron 35.0%
! AAGAACAGTCGCAATTTTTC+TGG + chr1_1:75686888-75686907 Msa0044190:intron 35.0%
GGATATTCATATGCAAAGAG+TGG + chr1_1:75686909-75686928 Msa0044190:intron 35.0%
!! TTTTGTTTCACTTGGTTCCT+TGG + chr1_1:75687005-75687024 Msa0044190:intron 35.0%
TGTATTTACGCACACATCAA+TGG - chr1_1:75687214-75687233 None:intergenic 35.0%
GTTTCCTGTTATGGTTCAAA+AGG - chr1_1:75687347-75687366 None:intergenic 35.0%
CCACTAAATGTTTCCTGTTA+TGG - chr1_1:75687356-75687375 None:intergenic 35.0%
CCATAACAGGAAACATTTAG+TGG + chr1_1:75687353-75687372 Msa0044190:intron 35.0%
AGGAAACATTTAGTGGTAGT+TGG + chr1_1:75687360-75687379 Msa0044190:intron 35.0%
TGAGTCTCAAATCCTAATTG+GGG - chr1_1:75687394-75687413 None:intergenic 35.0%
! TAATTTGTCTGTGATGGGAA+TGG - chr1_1:75687437-75687456 None:intergenic 35.0%
!! CTGCATTAATTTGTCTGTGA+TGG - chr1_1:75687443-75687462 None:intergenic 35.0%
CAGAAAATAATTGCACAGCA+TGG + chr1_1:75687476-75687495 Msa0044190:intron 35.0%
CCAATAGTCCAGAATGAAAA+AGG - chr1_1:75687588-75687607 None:intergenic 35.0%
!! CCTTTTTCATTCTGGACTAT+TGG + chr1_1:75687585-75687604 Msa0044190:intron 35.0%
AGATATTACACTGATCCTTC+TGG + chr1_1:75687637-75687656 Msa0044190:intron 35.0%
!! ATTTTGGCAATGCAATGCAA+AGG + chr1_1:75687663-75687682 Msa0044190:CDS 35.0%
TCTGCAAGAACAATTCAACA+AGG + chr1_1:75687720-75687739 Msa0044190:CDS 35.0%
TAATAAGCTGGAGAAAGACA+TGG - chr1_1:75688070-75688089 None:intergenic 35.0%
TCTCCAGCTTATTAATCTCT+AGG + chr1_1:75688076-75688095 Msa0044190:intron 35.0%
CTCCTTACTACAAAATCCAT+AGG + chr1_1:75688179-75688198 Msa0044190:intron 35.0%
! GACCTATGGATTTTGTAGTA+AGG - chr1_1:75688184-75688203 None:intergenic 35.0%
AAATTAGACTCAGGTGGTTT+GGG - chr1_1:75688220-75688239 None:intergenic 35.0%
AGATGGTAGAAATTAGACTC+AGG - chr1_1:75688229-75688248 None:intergenic 35.0%
TAGCACCTATAGTAGAAAGA+TGG - chr1_1:75688246-75688265 None:intergenic 35.0%
CGTCATCTATAGTAGAAAGA+TGG - chr1_1:75688271-75688290 None:intergenic 35.0%
!!! GCTCCATTTGTTTTGAGAAA+TGG + chr1_1:75688457-75688476 Msa0044190:intron 35.0%
TAACAACTCTCCTCATTATG+GGG - chr1_1:75688557-75688576 None:intergenic 35.0%
GTAACAACTCTCCTCATTAT+GGG - chr1_1:75688558-75688577 None:intergenic 35.0%
AACTGGAAGTAACATGCATT+TGG - chr1_1:75689015-75689034 None:intergenic 35.0%
CGCAAATAGATGGAAATCAT+AGG - chr1_1:75689181-75689200 None:intergenic 35.0%
TATATTATCGAGTGTGGAGA+TGG + chr1_1:75689443-75689462 Msa0044190:three_prime_UTR 35.0%
! AGTGTGATGTGGGCTTTTTA+TGG - chr1_1:75684395-75684414 None:intergenic 40.0%
! TCGATTTTTCGCAGTGTGAT+GGG - chr1_1:75684424-75684443 None:intergenic 40.0%
! TTCGATTTTTCGCAGTGTGA+TGG - chr1_1:75684425-75684444 None:intergenic 40.0%
! AAGAGAAAAGGGTGTGAGAT+TGG - chr1_1:75684504-75684523 None:intergenic 40.0%
ATTAGAACTGAGTATGACCG+TGG + chr1_1:75684766-75684785 Msa0044190:intron 40.0%
!! GAGAAAAAGTGTTGACTCCA+CGG - chr1_1:75684786-75684805 None:intergenic 40.0%
AACCTGAAACAAACGTCCTT+CGG - chr1_1:75684809-75684828 None:intergenic 40.0%
!! GATTGGCTTGAAAACGAAAG+AGG + chr1_1:75684959-75684978 Msa0044190:CDS 40.0%
GAATAGGTACATACCAGTAG+AGG - chr1_1:75685020-75685039 None:intergenic 40.0%
!! TTTAGGGCAGATTTTCATCG+AGG + chr1_1:75685066-75685085 Msa0044190:intron 40.0%
! TTAGGGCAGATTTTCATCGA+GGG + chr1_1:75685067-75685086 Msa0044190:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr1_1:75685113-75685132 Msa0044190:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr1_1:75685157-75685176 Msa0044190:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr1_1:75685158-75685177 Msa0044190:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_1:75685189-75685208 Msa0044190:intron 40.0%
!!! TGCCCTTTTTTGCCCTTTTT+AGG + chr1_1:75685258-75685277 Msa0044190:intron 40.0%
!!! GCCCTTTTTTGCCCTTTTTA+GGG + chr1_1:75685259-75685278 Msa0044190:intron 40.0%
GCCCTAAAAAGGGCAAAAAA+GGG - chr1_1:75685263-75685282 None:intergenic 40.0%
TGCCCTAAAAAGGGCAAAAA+AGG - chr1_1:75685264-75685283 None:intergenic 40.0%
CGCTATGGTGAGGTTAATAA+TGG + chr1_1:75685435-75685454 Msa0044190:intron 40.0%
TAACAGTCAGTTTAGCAGTG+CGG + chr1_1:75685470-75685489 Msa0044190:intron 40.0%
GTGAAATGTCCACAAACTTG+CGG + chr1_1:75685683-75685702 Msa0044190:intron 40.0%
! CATAATTTTCTCCACACTGC+TGG - chr1_1:75685897-75685916 None:intergenic 40.0%
CAGCAGTGTGGAGAAAATTA+TGG + chr1_1:75685895-75685914 Msa0044190:CDS 40.0%
CAGAATCACAGGTTCTCTTA+TGG + chr1_1:75686099-75686118 Msa0044190:intron 40.0%
GTTGTAGACTCTACAGTCAT+CGG - chr1_1:75686129-75686148 None:intergenic 40.0%
! CATGCAAGTTCACAGGTTTT+GGG - chr1_1:75686276-75686295 None:intergenic 40.0%
! TCATGCAAGTTCACAGGTTT+TGG - chr1_1:75686277-75686296 None:intergenic 40.0%
CAGTGGCTTAATCCTTTCAT+AGG - chr1_1:75686453-75686472 None:intergenic 40.0%
! TAAGCCACTGTCCTTTTGTA+AGG + chr1_1:75686463-75686482 Msa0044190:intron 40.0%
AACACCTTACAAAAGGACAG+TGG - chr1_1:75686470-75686489 None:intergenic 40.0%
ATAAGGAGAGACACTCCAAA+TGG - chr1_1:75686638-75686657 None:intergenic 40.0%
AGAAGTAACCATGGCTTAGA+TGG - chr1_1:75686704-75686723 None:intergenic 40.0%
ACATGACTCAGAAGTAACCA+TGG - chr1_1:75686713-75686732 None:intergenic 40.0%
TGCAAAGAGTGGTTAATGAG+TGG + chr1_1:75686920-75686939 Msa0044190:intron 40.0%
! AAGATGGCATGTTACTTCCA+AGG - chr1_1:75687025-75687044 None:intergenic 40.0%
CACACATCAATGGTAAGAGT+AGG - chr1_1:75687204-75687223 None:intergenic 40.0%
ACACTGCATTGTTCAACTCT+CGG + chr1_1:75687259-75687278 Msa0044190:intron 40.0%
ACTAGTTCATGGTAGCAACT+TGG + chr1_1:75687319-75687338 Msa0044190:intron 40.0%
GAGTCTCAAATCCTAATTGG+GGG - chr1_1:75687393-75687412 None:intergenic 40.0%
TCAGCAGTCACTAGATGATA+CGG + chr1_1:75687533-75687552 Msa0044190:intron 40.0%
CAATGCAATGCAAAGGCTAT+TGG + chr1_1:75687670-75687689 Msa0044190:CDS 40.0%
!! AATGCAAAGGCTATTGGTTC+AGG + chr1_1:75687676-75687695 Msa0044190:CDS 40.0%
AGGTATCCATGTTCTTACAG+TGG + chr1_1:75687740-75687759 Msa0044190:intron 40.0%
GGTATCCATGTTCTTACAGT+GGG + chr1_1:75687741-75687760 Msa0044190:intron 40.0%
AACAACCCACTGTAAGAACA+TGG - chr1_1:75687749-75687768 None:intergenic 40.0%
TATTAGCTGGGATGGTAAAG+TGG + chr1_1:75687809-75687828 Msa0044190:intron 40.0%
! ATCTCCATTTTCTCCACAGT+TGG - chr1_1:75687876-75687895 None:intergenic 40.0%
! GCATGCACTAAATTTGAGAC+TGG - chr1_1:75687901-75687920 None:intergenic 40.0%
GTGCATGCAGATTCAAAACA+TGG + chr1_1:75687913-75687932 Msa0044190:intron 40.0%
CTTATCTCACTAAGTGGAGT+CGG + chr1_1:75688004-75688023 Msa0044190:intron 40.0%
GGACCTAGAGATTAATAAGC+TGG - chr1_1:75688082-75688101 None:intergenic 40.0%
AGTCAAATCACTAGAGGTAG+GGG - chr1_1:75688140-75688159 None:intergenic 40.0%
GAGTCAAATCACTAGAGGTA+GGG - chr1_1:75688141-75688160 None:intergenic 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr1_1:75688168-75688187 None:intergenic 40.0%
GAAATTAGACTCAGGTGGTT+TGG - chr1_1:75688221-75688240 None:intergenic 40.0%
TGGTAGAAATTAGACTCAGG+TGG - chr1_1:75688226-75688245 None:intergenic 40.0%
ACGCAGAAAGGATCTTAAGA+GGG - chr1_1:75688310-75688329 None:intergenic 40.0%
GGTAACAACTCTCCTCATTA+TGG - chr1_1:75688559-75688578 None:intergenic 40.0%
TAATGAGGAGAGTTGTTACC+TGG + chr1_1:75688559-75688578 Msa0044190:intron 40.0%
GAGTTGTTACCTGGAATTCT+TGG + chr1_1:75688568-75688587 Msa0044190:intron 40.0%
AGCAAAGATCCAAGAATTCC+AGG - chr1_1:75688580-75688599 None:intergenic 40.0%
GAAGCAAGTTATGGAAGAGA+AGG + chr1_1:75688978-75688997 Msa0044190:CDS 40.0%
! CGCGTTTGCAAAGCTTTTTA+TGG + chr1_1:75689469-75689488 Msa0044190:three_prime_UTR 40.0%
TGGGTTTCAGAGTGTGATGT+GGG - chr1_1:75684405-75684424 None:intergenic 45.0%
ATGGGTTTCAGAGTGTGATG+TGG - chr1_1:75684406-75684425 None:intergenic 45.0%
AGAGAGAGAGAGAGTCCTTT+AGG + chr1_1:75684468-75684487 Msa0044190:intron 45.0%
! ACTGCATAAAAATGGCGGAG+CGG - chr1_1:75684560-75684579 None:intergenic 45.0%
!!! GTCAACACTTTTTCTCCCGA+AGG + chr1_1:75684790-75684809 Msa0044190:CDS 45.0%
ACCTGAAACAAACGTCCTTC+GGG - chr1_1:75684808-75684827 None:intergenic 45.0%
CTTGAAAACGAAAGAGGGTG+TGG + chr1_1:75684965-75684984 Msa0044190:CDS 45.0%
! TAGGGCAGATTTTCATCGAG+GGG + chr1_1:75685068-75685087 Msa0044190:intron 45.0%
! TTTTCATCGAGGGGTAACCT+TGG + chr1_1:75685077-75685096 Msa0044190:intron 45.0%
TCATGTGACTGTAAGGTCAC+AGG + chr1_1:75685120-75685139 Msa0044190:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr1_1:75685153-75685172 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_1:75685185-75685204 Msa0044190:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_1:75685188-75685207 Msa0044190:intron 45.0%
! TCATCCCTCTATCCCACTTT+TGG + chr1_1:75685542-75685561 Msa0044190:intron 45.0%
!! CATCCCTCTATCCCACTTTT+GGG + chr1_1:75685543-75685562 Msa0044190:intron 45.0%
!! ATCCCTCTATCCCACTTTTG+GGG + chr1_1:75685544-75685563 Msa0044190:intron 45.0%
AACCCCAAAAGTGGGATAGA+GGG - chr1_1:75685549-75685568 None:intergenic 45.0%
GACTACGCACATGTTTGTCT+TGG + chr1_1:75685596-75685615 Msa0044190:intron 45.0%
TACGCACATGTTTGTCTTGG+TGG + chr1_1:75685599-75685618 Msa0044190:intron 45.0%
AAATGTCCACAAACTTGCGG+TGG + chr1_1:75685686-75685705 Msa0044190:intron 45.0%
AATGTCCACAAACTTGCGGT+GGG + chr1_1:75685687-75685706 Msa0044190:intron 45.0%
! ACACGTTTGGATGTGCGTTT+TGG - chr1_1:75685718-75685737 None:intergenic 45.0%
GGAAGGTGATGAAGAATCCA+TGG + chr1_1:75686182-75686201 Msa0044190:CDS 45.0%
AAGCGATCATGCAAGTTCAC+AGG - chr1_1:75686283-75686302 None:intergenic 45.0%
!! AAAGAAGTGATGGGCGAAGA+TGG - chr1_1:75687041-75687060 None:intergenic 45.0%
! GGCACCTTTTGAACCATAAC+AGG + chr1_1:75687340-75687359 Msa0044190:intron 45.0%
TTGGCATCTTACCCCCAATT+AGG + chr1_1:75687379-75687398 Msa0044190:intron 45.0%
! CTGATCCTTCTGGCACATTT+TGG + chr1_1:75687647-75687666 Msa0044190:CDS 45.0%
CATTGCCAAAATGTGCCAGA+AGG - chr1_1:75687655-75687674 None:intergenic 45.0%
!! GCTATTGGTTCAGGATCAGA+AGG + chr1_1:75687685-75687704 Msa0044190:CDS 45.0%
! CATTTTCTCCACAGTTGGAG+AGG - chr1_1:75687871-75687890 None:intergenic 45.0%
CTCTCCAACTGTGGAGAAAA+TGG + chr1_1:75687869-75687888 Msa0044190:intron 45.0%
CCACTTAGTGAGATAAGGCT+TGG - chr1_1:75688001-75688020 None:intergenic 45.0%
! CCAAGCCTTATCTCACTAAG+TGG + chr1_1:75687998-75688017 Msa0044190:intron 45.0%
CGACTCCACTTAGTGAGATA+AGG - chr1_1:75688006-75688025 None:intergenic 45.0%
GGAGTCAAATCACTAGAGGT+AGG - chr1_1:75688142-75688161 None:intergenic 45.0%
AGGAGAGTAGATCAGATGGA+GGG - chr1_1:75688164-75688183 None:intergenic 45.0%
AAGGAGAGTAGATCAGATGG+AGG - chr1_1:75688165-75688184 None:intergenic 45.0%
GCATGTAGAGAGAAGACCTA+TGG - chr1_1:75688198-75688217 None:intergenic 45.0%
CGCAGAAAGGATCTTAAGAG+GGG - chr1_1:75688309-75688328 None:intergenic 45.0%
GACGCAGAAAGGATCTTAAG+AGG - chr1_1:75688311-75688330 None:intergenic 45.0%
TTCTCCATTCTCTCCTCGAA+TGG + chr1_1:75688519-75688538 Msa0044190:intron 45.0%
GGCGAAACCCCAAAGAATTA+AGG - chr1_1:75688676-75688695 None:intergenic 45.0%
CTGGCAATGTCAACGTTGTT+GGG - chr1_1:75689101-75689120 None:intergenic 45.0%
CAACAACGTTGACATTGCCA+GGG + chr1_1:75689100-75689119 Msa0044190:CDS 45.0%
GGGGTATAAAGATGATACGC+TGG - chr1_1:75689131-75689150 None:intergenic 45.0%
TCATCTTTATACCCCGTCTG+AGG + chr1_1:75689136-75689155 Msa0044190:CDS 45.0%
!!! TAATTTTTTTTTGTTAATTT+AGG + chr1_1:75685049-75685068 Msa0044190:intron 5.0%
!!! AATTTTTTTTTGTTAATTTA+GGG + chr1_1:75685050-75685069 Msa0044190:intron 5.0%
! TCTCTCTCTCGCTGGGTTTT+TGG - chr1_1:75684453-75684472 None:intergenic 50.0%
! CATAAAAATGGCGGAGCGGA+GGG - chr1_1:75684556-75684575 None:intergenic 50.0%
TCCCGAAGGACGTTTGTTTC+AGG + chr1_1:75684804-75684823 Msa0044190:CDS 50.0%
CAGCTTGGATCAACTGCGAT+TGG + chr1_1:75684942-75684961 Msa0044190:intron 50.0%
GCGTATTACTTCGCCTCTAC+TGG + chr1_1:75685004-75685023 Msa0044190:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_1:75685097-75685116 None:intergenic 50.0%
AAGGTCACAGGTTCAAGTCC+TGG + chr1_1:75685132-75685151 Msa0044190:intron 50.0%
AAGGGCAAAAAAGGGCAACC+CGG - chr1_1:75685255-75685274 None:intergenic 50.0%
AAAATAGCGCCGCTATGGTG+AGG + chr1_1:75685425-75685444 Msa0044190:intron 50.0%
TCAGTTTAGCAGTGCGGAGT+GGG + chr1_1:75685476-75685495 Msa0044190:intron 50.0%
CAACCCCAAAAGTGGGATAG+AGG - chr1_1:75685550-75685569 None:intergenic 50.0%
GTCAATCCTGCATTGTGGTG+CGG - chr1_1:75685579-75685598 None:intergenic 50.0%
GCGTAGTCAATCCTGCATTG+TGG - chr1_1:75685584-75685603 None:intergenic 50.0%
GCACATGTTTGTCTTGGTGG+TGG + chr1_1:75685602-75685621 Msa0044190:intron 50.0%
ATGTCCACAAACTTGCGGTG+GGG + chr1_1:75685688-75685707 Msa0044190:intron 50.0%
! CACATTGGCTGTGCAATGAG+TGG + chr1_1:75685929-75685948 Msa0044190:CDS 50.0%
! GCATGCACGAGTTGAAACTC+AGG + chr1_1:75685982-75686001 Msa0044190:CDS 50.0%
CTTTGGCAGTCTCGACCATT+TGG + chr1_1:75686620-75686639 Msa0044190:intron 50.0%
! GGAGTGTCTCTCCTTATTGC+TGG + chr1_1:75686641-75686660 Msa0044190:CDS 50.0%
TCTCGTCATGGCCAGCAATA+AGG - chr1_1:75686655-75686674 None:intergenic 50.0%
ATTGCTGGCCATGACGAGAA+TGG + chr1_1:75686656-75686675 Msa0044190:CDS 50.0%
!! CTGGACTATTGGTCTTGCTG+AGG + chr1_1:75687596-75687615 Msa0044190:intron 50.0%
GAGGGGAGTCAAATCACTAG+AGG - chr1_1:75688146-75688165 None:intergenic 50.0%
GGAGAGTAGATCAGATGGAG+GGG - chr1_1:75688163-75688182 None:intergenic 50.0%
TATAGATGACGAACCCTCGC+TGG + chr1_1:75688280-75688299 Msa0044190:intron 50.0%
CTCTCCATTCGAGGAGAGAA+TGG - chr1_1:75688526-75688545 None:intergenic 50.0%
CATTCTCTCCTCGAATGGAG+AGG + chr1_1:75688524-75688543 Msa0044190:intron 50.0%
AGGATGCAGACCCCATAATG+AGG + chr1_1:75688544-75688563 Msa0044190:intron 50.0%
TCAGTAGGGGGACAAACAAC+TGG - chr1_1:75689032-75689051 None:intergenic 50.0%
CCTGGCAATGTCAACGTTGT+TGG - chr1_1:75689102-75689121 None:intergenic 50.0%
CCAACAACGTTGACATTGCC+AGG + chr1_1:75689099-75689118 Msa0044190:CDS 50.0%
TCTTTATACCCCGTCTGAGG+TGG + chr1_1:75689139-75689158 Msa0044190:CDS 50.0%
ATCACAGCTTCCACCTCAGA+CGG - chr1_1:75689152-75689171 None:intergenic 50.0%
CTCTCTCTCTCTCTCTCGCT+GGG - chr1_1:75684460-75684479 None:intergenic 55.0%
TCTCTCTCTCTCTCTCTCGC+TGG - chr1_1:75684461-75684480 None:intergenic 55.0%
GAGCGGAGGGTTGAGAAATC+GGG - chr1_1:75684543-75684562 None:intergenic 55.0%
GGAGCGGAGGGTTGAGAAAT+CGG - chr1_1:75684544-75684563 None:intergenic 55.0%
! GCATAAAAATGGCGGAGCGG+AGG - chr1_1:75684557-75684576 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1_1:75685228-75685247 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1_1:75685229-75685248 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr1_1:75685233-75685252 Msa0044190:intron 55.0%
AGCGCAAAATAGCGCCGCTA+TGG + chr1_1:75685420-75685439 Msa0044190:intron 55.0%
GTCAGTTTAGCAGTGCGGAG+TGG + chr1_1:75685475-75685494 Msa0044190:intron 55.0%
CAGTTTAGCAGTGCGGAGTG+GGG + chr1_1:75685477-75685496 Msa0044190:intron 55.0%
AGTTTAGCAGTGCGGAGTGG+GGG + chr1_1:75685478-75685497 Msa0044190:intron 55.0%
GAGCGGTCAACCCCAAAAGT+GGG - chr1_1:75685557-75685576 None:intergenic 55.0%
TGTCCACAAACTTGCGGTGG+GGG + chr1_1:75685689-75685708 Msa0044190:intron 55.0%
!! TGTGACCTAGCCTTGCGCTT+TGG + chr1_1:75686159-75686178 Msa0044190:CDS 55.0%
!! GTGACCTAGCCTTGCGCTTT+GGG + chr1_1:75686160-75686179 Msa0044190:CDS 55.0%
!! TGACCTAGCCTTGCGCTTTG+GGG + chr1_1:75686161-75686180 Msa0044190:CDS 55.0%
ATCACCTTCCCCAAAGCGCA+AGG - chr1_1:75686172-75686191 None:intergenic 55.0%
GGCTAGGTCCATTCTCGTCA+TGG - chr1_1:75686667-75686686 None:intergenic 55.0%
TTAAGAGGGGTGACCAGCGA+GGG - chr1_1:75688296-75688315 None:intergenic 55.0%
GTCTGCATCCTCTCCATTCG+AGG - chr1_1:75688535-75688554 None:intergenic 55.0%
ATGATACGCTGGAGCAACCC+TGG - chr1_1:75689120-75689139 None:intergenic 55.0%
TCACAGCTTCCACCTCAGAC+GGG - chr1_1:75689151-75689170 None:intergenic 55.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1_1:75685086-75685105 Msa0044190:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1_1:75685201-75685220 Msa0044190:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr1_1:75685234-75685253 Msa0044190:intron 60.0%
GGAGCGGTCAACCCCAAAAG+TGG - chr1_1:75685558-75685577 None:intergenic 60.0%
TCCTGCATTGTGGTGCGGAG+CGG - chr1_1:75685574-75685593 None:intergenic 60.0%
TCACCCCCACCGCAAGTTTG+TGG - chr1_1:75685695-75685714 None:intergenic 60.0%
CACTGCTGGGCTCCTGAAAG+TGG - chr1_1:75685883-75685902 None:intergenic 60.0%
CTTTCAGGAGCCCAGCAGTG+TGG + chr1_1:75685883-75685902 Msa0044190:intron 60.0%
CTTCCCCAAAGCGCAAGGCT+AGG - chr1_1:75686167-75686186 None:intergenic 60.0%
!! CTAGCCTTGCGCTTTGGGGA+AGG + chr1_1:75686165-75686184 Msa0044190:CDS 60.0%
GTCCAGCTCCTCTCCAACTG+TGG + chr1_1:75687860-75687879 Msa0044190:intron 60.0%
CTCCACAGTTGGAGAGGAGC+TGG - chr1_1:75687865-75687884 None:intergenic 60.0%
CTTAAGAGGGGTGACCAGCG+AGG - chr1_1:75688297-75688316 None:intergenic 60.0%
CACAGCTTCCACCTCAGACG+GGG - chr1_1:75689150-75689169 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1_1:75685203-75685222 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr1_1:75685216-75685235 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr1_1:75685217-75685236 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr1_1:75685216-75685235 Msa0044190:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr1_1:75685217-75685236 Msa0044190:intron 65.0%
ACCGCTCCGCACCACAATGC+AGG + chr1_1:75685570-75685589 Msa0044190:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr1_1:75685218-75685237 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr1_1:75685222-75685241 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_1:75685223-75685242 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75684374 75689578 75684374 ID=Msa0044190;Name=Msa0044190
chr1_1 mRNA 75684374 75689578 75684374 ID=Msa0044190-mRNA-1;Parent=Msa0044190;Name=Msa0044190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|1|1|1|0.8|0.72|11|394|237
chr1_1 exon 75684374 75684397 75684374 ID=Msa0044190-mRNA-1:exon:25503;Parent=Msa0044190-mRNA-1
chr1_1 exon 75684418 75684468 75684418 ID=Msa0044190-mRNA-1:exon:25504;Parent=Msa0044190-mRNA-1
chr1_1 exon 75684569 75684629 75684569 ID=Msa0044190-mRNA-1:exon:25505;Parent=Msa0044190-mRNA-1
chr1_1 exon 75684771 75684852 75684771 ID=Msa0044190-mRNA-1:exon:25506;Parent=Msa0044190-mRNA-1
chr1_1 exon 75684945 75685025 75684945 ID=Msa0044190-mRNA-1:exon:25507;Parent=Msa0044190-mRNA-1
chr1_1 exon 75685890 75686003 75685890 ID=Msa0044190-mRNA-1:exon:25508;Parent=Msa0044190-mRNA-1
chr1_1 exon 75686102 75686203 75686102 ID=Msa0044190-mRNA-1:exon:25509;Parent=Msa0044190-mRNA-1
chr1_1 exon 75686629 75686687 75686629 ID=Msa0044190-mRNA-1:exon:25510;Parent=Msa0044190-mRNA-1
chr1_1 exon 75687639 75687741 75687639 ID=Msa0044190-mRNA-1:exon:25511;Parent=Msa0044190-mRNA-1
chr1_1 exon 75688934 75688999 75688934 ID=Msa0044190-mRNA-1:exon:25512;Parent=Msa0044190-mRNA-1
chr1_1 exon 75689092 75689578 75689092 ID=Msa0044190-mRNA-1:exon:25513;Parent=Msa0044190-mRNA-1
chr1_1 five_prime_UTR 75684374 75684397 75684374 ID=Msa0044190-mRNA-1:five_prime_utr;Parent=Msa0044190-mRNA-1
chr1_1 five_prime_UTR 75684418 75684468 75684418 ID=Msa0044190-mRNA-1:five_prime_utr;Parent=Msa0044190-mRNA-1
chr1_1 five_prime_UTR 75684569 75684615 75684569 ID=Msa0044190-mRNA-1:five_prime_utr;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75684616 75684629 75684616 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75684771 75684852 75684771 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75684945 75685025 75684945 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75685890 75686003 75685890 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75686102 75686203 75686102 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75686629 75686687 75686629 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75687639 75687741 75687639 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75688934 75688999 75688934 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 CDS 75689092 75689184 75689092 ID=Msa0044190-mRNA-1:cds;Parent=Msa0044190-mRNA-1
chr1_1 three_prime_UTR 75689185 75689578 75689185 ID=Msa0044190-mRNA-1:three_prime_utr;Parent=Msa0044190-mRNA-1
Gene Sequence

>Msa0044190

ATGTTTCTCACAAGAACTGAGTATGACCGTGGAGTCAACACTTTTTCTCCCGAAGGACGTTTGTTTCAGGTTGAATATGCAATTGAAGCTATTAAGCTTGGATCAACTGCGATTGGCTTGAAAACGAAAGAGGGTGTGGTTCTTGCTGTTGAAAAGCGTATTACTTCGCCTCTACTGGAGCCCAGCAGTGTGGAGAAAATTATGGAAATTGATGATCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCACAGGTTCTCTTATGGTGAACCGATGACTGTAGAGTCTACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGGGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTTATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGCACATTTTGGCAATGCAATGCAAAGGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCAATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCGTATCATCTTTATACCCCGTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA

Protein sequence

>Msa0044190

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVISRL*