AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0184360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184360 MtrunA17_Chr5g0406901 94.545 330 18 0 1 330 1 330 0.0 637
Msa0184360 MtrunA17_Chr3g0092141 36.296 135 78 2 181 314 38 165 8.46e-22 91.3
Msa0184360 MtrunA17_Chr4g0060761 36.090 133 81 1 191 323 145 273 1.45e-21 92.4
Msa0184360 MtrunA17_Chr3g0127001 37.600 125 60 2 190 314 148 254 3.31e-19 85.9
Msa0184360 MtrunA17_Chr1g0182631 37.594 133 63 3 182 314 115 227 5.09e-19 84.7
Msa0184360 MtrunA17_Chr3g0136081 48.276 87 40 2 199 283 414 497 1.14e-13 71.6
Msa0184360 MtrunA17_Chr3g0143921 45.122 82 41 2 177 256 570 649 1.05e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184360 AT4G35590.1 50.000 328 136 9 1 313 40 354 1.89e-90 275
Msa0184360 AT4G35590.2 50.318 314 128 9 15 313 4 304 2.98e-87 265
Msa0184360 AT1G74480.1 45.217 115 58 2 199 311 131 242 4.32e-22 94.7
Msa0184360 AT1G18790.1 43.802 121 62 3 194 312 120 236 5.27e-22 94.0
Msa0184360 AT5G66990.1 41.818 110 60 2 206 314 164 270 7.31e-20 88.2
Msa0184360 AT5G53040.1 41.739 115 54 1 200 314 147 248 1.27e-19 87.0
Msa0184360 AT5G16100.2 50.000 64 32 0 193 256 346 409 1.33e-13 71.6

Find 60 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATTACTTTATCAGATT+TGG 0.267461 1_4:+73743334 Msa0184360:CDS
AAAAGGAAGTGCAGAGAATT+TGG 0.277802 1_4:+73743422 Msa0184360:CDS
TGAAAGCTACTCCAATTCTT+AGG 0.296460 1_4:+73741407 Msa0184360:CDS
AGAAGACGAGGCTGAGTTAC+TGG 0.328138 1_4:+73742991 Msa0184360:CDS
CAGTCTCATTCATGATCTTC+AGG 0.329225 1_4:+73743484 Msa0184360:CDS
TTCTTTGACGCTTCTGCAAT+TGG 0.345585 1_4:-73743374 None:intergenic
TTTGGAATGGCCTGAAGCTT+TGG 0.353863 1_4:-73742800 None:intergenic
TTTCAGGAATCCAAAGCTTC+AGG 0.357774 1_4:+73742790 Msa0184360:intron
GAGCTCTGCAAGGGAAGAAT+TGG 0.370187 1_4:+73742889 Msa0184360:CDS
ATACCTTGTAACCAACAAAA+AGG 0.370413 1_4:-73741542 None:intergenic
GATTTCAACAACCTAAGAAT+TGG 0.374799 1_4:-73741418 None:intergenic
GTATTCCTCGCTGGCCTCAT+AGG 0.379146 1_4:+73743444 Msa0184360:CDS
AAGGGTATAAGAATGGAGTT+TGG 0.381031 1_4:+73741464 Msa0184360:CDS
AGATGCTAATTGCTAGGTTT+AGG 0.384292 1_4:-73744249 None:intergenic
AGTCTTGCCTGTGCTTAATC+AGG 0.387896 1_4:+73742946 Msa0184360:CDS
GAAAATGAAGAAGAAGAAGT+TGG 0.392727 1_4:-73741057 None:intergenic
TCTTCCCTTGCAGAGCTCTC+TGG 0.396713 1_4:-73742884 None:intergenic
TGGAGATCATTAAGCAGGTT+TGG 0.397862 1_4:-73742818 None:intergenic
CATAGAGAAGAGGCTCTTCA+TGG 0.402183 1_4:+73744131 Msa0184360:CDS
TTTCTCCTCCATCACATTCA+CGG 0.441238 1_4:-73741333 None:intergenic
CGTCAAAGAATCTAAATGTT+GGG 0.449206 1_4:+73743387 Msa0184360:CDS
TTGCCTTCTTATCACTGCCA+TGG 0.457172 1_4:-73744082 None:intergenic
AAAGATGTTGGAAAGTGAAA+AGG 0.459498 1_4:+73744104 Msa0184360:CDS
TTGGGCTTACTGTTCTCAAA+AGG 0.466425 1_4:+73743405 Msa0184360:CDS
TCAGCCTCGTCTTCTTCATA+AGG 0.476498 1_4:-73742983 None:intergenic
AACATCTTGTCTGAATCTCT+TGG 0.478887 1_4:-73744169 None:intergenic
GAGAATTTGGTATTCCTCGC+TGG 0.487057 1_4:+73743435 Msa0184360:CDS
CAGCCATGGCAGTGATAAGA+AGG 0.499451 1_4:+73744079 Msa0184360:CDS
GCAGGAAGAGGCAAAACATC+AGG 0.500010 1_4:+73744038 Msa0184360:intron
GATAAGAAGGCAAAAGATGT+TGG 0.505266 1_4:+73744092 Msa0184360:CDS
ATCATTAAGCAGGTTTGGAA+TGG 0.506660 1_4:-73742813 None:intergenic
AATTGGCATATCAAAGTACT+TGG 0.507062 1_4:-73743357 None:intergenic
AGAAGTTGGAGAAAGCATGA+AGG 0.512290 1_4:-73741043 None:intergenic
TGAATGTGATGGAGGAGAAA+AGG 0.512445 1_4:+73741336 Msa0184360:CDS
AATCTTTGCAACATGGTCAC+TGG 0.527182 1_4:-73743318 None:intergenic
TTGGAATGTGAGAAAATTGA+GGG 0.529395 1_4:-73741519 None:intergenic
ATACAAGTTGGAACCGAAGA+AGG 0.529415 1_4:+73742847 Msa0184360:CDS
TCACGTGGAGATCATTAAGC+AGG 0.532780 1_4:-73742823 None:intergenic
AGAGGCAAAACATCAGGAAA+GGG 0.535237 1_4:+73744044 Msa0184360:CDS
ATCAGAAGATGCTAATTGCT+AGG 0.535738 1_4:-73744255 None:intergenic
GCGTCAAAGAATCTAAATGT+TGG 0.551834 1_4:+73743386 Msa0184360:CDS
GTTGGAATGTGAGAAAATTG+AGG 0.552092 1_4:-73741520 None:intergenic
TCTCCACGTGATATACAAGT+TGG 0.555482 1_4:+73742835 Msa0184360:CDS
AAGAGGCAAAACATCAGGAA+AGG 0.561722 1_4:+73744043 Msa0184360:CDS
AAAAGGAAAACATAGAGAAG+AGG 0.578123 1_4:+73744121 Msa0184360:CDS
TTGAGATCCTGATTAAGCAC+AGG 0.580889 1_4:-73742953 None:intergenic
GAGAAGAAGAGTAATGAGCG+AGG 0.586084 1_4:-73741099 None:intergenic
GGAGGATAAAGATGCAGCCA+TGG 0.600209 1_4:+73744065 Msa0184360:CDS
AGTGATTTGATCTTCCTATG+AGG 0.604696 1_4:-73743458 None:intergenic
GGCAAAACATCAGGAAAGGG+AGG 0.624378 1_4:+73744047 Msa0184360:CDS
TACACCAGAGAGCTCTGCAA+GGG 0.628005 1_4:+73742880 Msa0184360:CDS
CATGTGTACCGTGAATGTGA+TGG 0.635852 1_4:+73741325 Msa0184360:CDS
ATACACCAGAGAGCTCTGCA+AGG 0.645197 1_4:+73742879 Msa0184360:CDS
TCTTCCTTATGAAGAAGACG+AGG 0.662936 1_4:+73742979 Msa0184360:CDS
ATAAAGTAATCTTTGCAACA+TGG 0.664575 1_4:-73743325 None:intergenic
TTCAACAACACTATTCAACC+AGG 0.665257 1_4:+73741122 Msa0184360:CDS
ATCTTCCTATGAGGCCAGCG+AGG 0.669880 1_4:-73743449 None:intergenic
GTTCCAACTTGTATATCACG+TGG 0.670645 1_4:-73742838 None:intergenic
TCTGCAAGGGAAGAATTGGA+AGG 0.677605 1_4:+73742893 Msa0184360:CDS
GTGTACCGTGAATGTGATGG+AGG 0.689782 1_4:+73741328 Msa0184360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATACACTTATTTTATTAAT+AGG + chr1_4:73743142-73743161 Msa0184360:intron 10.0%
!! CATAATAATAAATAAAAAAG+TGG - chr1_4:73743517-73743536 None:intergenic 10.0%
!! ACAATTCAAATTCAATAAAA+GGG - chr1_4:73741581-73741600 None:intergenic 15.0%
!! AACAATTCAAATTCAATAAA+AGG - chr1_4:73741582-73741601 None:intergenic 15.0%
!! ATTATATGATTATGTATTCT+GGG + chr1_4:73741609-73741628 Msa0184360:intron 15.0%
!!! TATTTTATTAATAGGAATCA+TGG + chr1_4:73743150-73743169 Msa0184360:intron 15.0%
!!! TTTTTTTGTTGTTTTGTTTG+TGG + chr1_4:73741244-73741263 Msa0184360:intron 20.0%
!!! TTTTTTGTTGTTTTGTTTGT+GGG + chr1_4:73741245-73741264 Msa0184360:intron 20.0%
!! GATTATATGATTATGTATTC+TGG + chr1_4:73741608-73741627 Msa0184360:intron 20.0%
!! AATACAAATTGATTAAAGCA+GGG - chr1_4:73742090-73742109 None:intergenic 20.0%
!! ACATTTATATATCATTCACA+GGG - chr1_4:73742164-73742183 None:intergenic 20.0%
!! TACATTTATATATCATTCAC+AGG - chr1_4:73742165-73742184 None:intergenic 20.0%
!!! TATTGATTTCTTTATGTATG+TGG + chr1_4:73742349-73742368 Msa0184360:intron 20.0%
!!! GAATATGTTTTTTGATTTCT+TGG + chr1_4:73742732-73742751 Msa0184360:intron 20.0%
!! TAAAATAAGTGTATAAAGCT+AGG - chr1_4:73743137-73743156 None:intergenic 20.0%
!!! TTTTTTAGGAAAGAAAAAGA+GGG + chr1_4:73743292-73743311 Msa0184360:CDS 20.0%
!! AAAGATTACTTTATCAGATT+TGG + chr1_4:73743334-73743353 Msa0184360:CDS 20.0%
!! TATTTCAACCAAATACTATA+AGG - chr1_4:73743677-73743696 None:intergenic 20.0%
!! ATGAAAATTTATAGTATCTG+AGG + chr1_4:73743702-73743721 Msa0184360:intron 20.0%
!! TTGTAACTTAAACAAAATCA+CGG - chr1_4:73743828-73743847 None:intergenic 20.0%
!! TTATAGACCAAATACTTTAT+AGG - chr1_4:73743930-73743949 None:intergenic 20.0%
!!! TTTTTGTTGTTTTGTTTGTG+GGG + chr1_4:73741246-73741265 Msa0184360:intron 25.0%
!!! TTTCTGAAGAGATTTTTGAA+GGG + chr1_4:73741446-73741465 Msa0184360:CDS 25.0%
!!! ATTTTTGAAGGGTATAAGAA+TGG + chr1_4:73741457-73741476 Msa0184360:CDS 25.0%
!!! GTACCAATGTTTTTAAATAG+CGG + chr1_4:73741673-73741692 Msa0184360:intron 25.0%
! CAATACAAATTGATTAAAGC+AGG - chr1_4:73742091-73742110 None:intergenic 25.0%
! AGTTATCTAATCTAACAAAC+AGG - chr1_4:73742307-73742326 None:intergenic 25.0%
!!! CATGTTCTTCTTTAATTTTC+AGG + chr1_4:73742774-73742793 Msa0184360:intron 25.0%
! GACATAATTAACTCAACATT+AGG - chr1_4:73743226-73743245 None:intergenic 25.0%
!!! GTTTTTTAGGAAAGAAAAAG+AGG + chr1_4:73743291-73743310 Msa0184360:CDS 25.0%
! ATAAAGTAATCTTTGCAACA+TGG - chr1_4:73743328-73743347 None:intergenic 25.0%
!! GTAAATCATAGAAGTTTTCT+TGG - chr1_4:73743591-73743610 None:intergenic 25.0%
! CTAAATATTAGTTCAAGAGT+TGG - chr1_4:73743616-73743635 None:intergenic 25.0%
! ATTGCAAACCTTATAGTATT+TGG + chr1_4:73743666-73743685 Msa0184360:intron 25.0%
! GTACAGAAAATATTTGTACA+AGG - chr1_4:73743745-73743764 None:intergenic 25.0%
! GTTGTCAATTAGTATATGTT+TGG + chr1_4:73743769-73743788 Msa0184360:intron 25.0%
CCAAAAACAAACGAAAAAAG+CGG + chr1_4:73740959-73740978 Msa0184360:five_prime_UTR 30.0%
GAAAATGAAGAAGAAGAAGT+TGG - chr1_4:73741060-73741079 None:intergenic 30.0%
! CATTTTCATCTTCATCTTCA+TGG + chr1_4:73741073-73741092 Msa0184360:exon 30.0%
GATTTCAACAACCTAAGAAT+TGG - chr1_4:73741421-73741440 None:intergenic 30.0%
!! GTTTCTGAAGAGATTTTTGA+AGG + chr1_4:73741445-73741464 Msa0184360:CDS 30.0%
TTGGAATGTGAGAAAATTGA+GGG - chr1_4:73741522-73741541 None:intergenic 30.0%
ATACCTTGTAACCAACAAAA+AGG - chr1_4:73741545-73741564 None:intergenic 30.0%
! TTATGTATTCTGGGTTTGTT+TGG + chr1_4:73741618-73741637 Msa0184360:intron 30.0%
TAGCCGCTATTTAAAAACAT+TGG - chr1_4:73741679-73741698 None:intergenic 30.0%
! TTTTTAAATAGCGGCTATAG+CGG + chr1_4:73741682-73741701 Msa0184360:intron 30.0%
TTATACAAAACAGTGTATCG+TGG - chr1_4:73741755-73741774 None:intergenic 30.0%
TTGTGAAATAGCAACTATAG+CGG + chr1_4:73741779-73741798 Msa0184360:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr1_4:73741942-73741961 None:intergenic 30.0%
GTTCAAAAATCAGTTACCAA+TGG - chr1_4:73742375-73742394 None:intergenic 30.0%
AGTATGTTGTAGAACAGTTA+GGG - chr1_4:73742580-73742599 None:intergenic 30.0%
AAGTATGTTGTAGAACAGTT+AGG - chr1_4:73742581-73742600 None:intergenic 30.0%
! ACTGTTCTACAACATACTTT+TGG + chr1_4:73742582-73742601 Msa0184360:intron 30.0%
TTTGGAGAAGTTAGAATTTG+AGG + chr1_4:73742600-73742619 Msa0184360:intron 30.0%
TTGGAGAAGTTAGAATTTGA+GGG + chr1_4:73742601-73742620 Msa0184360:intron 30.0%
ATTAAAGAAGAACATGACAG+AGG - chr1_4:73742770-73742789 None:intergenic 30.0%
!! ACAAATTTTGAAAGTTCAGC+AGG + chr1_4:73743022-73743041 Msa0184360:CDS 30.0%
GGAATAAAATGTTCAAAAGC+AGG - chr1_4:73743103-73743122 None:intergenic 30.0%
ATTAGGAAGAAGTTATGCAT+TGG - chr1_4:73743209-73743228 None:intergenic 30.0%
! AATTGGCATATCAAAGTACT+TGG - chr1_4:73743360-73743379 None:intergenic 30.0%
CGTCAAAGAATCTAAATGTT+GGG + chr1_4:73743387-73743406 Msa0184360:CDS 30.0%
TATAGGCTTCAGTGTATATT+TGG - chr1_4:73743913-73743932 None:intergenic 30.0%
! ACTGAAGCCTATAAAGTATT+TGG + chr1_4:73743920-73743939 Msa0184360:intron 30.0%
TAAGGAGTTCACTTAAAGAT+CGG - chr1_4:73743999-73744018 None:intergenic 30.0%
AAAGATGTTGGAAAGTGAAA+AGG + chr1_4:73744104-73744123 Msa0184360:CDS 30.0%
AAAAGGAAAACATAGAGAAG+AGG + chr1_4:73744121-73744140 Msa0184360:CDS 30.0%
!!! CCGCTTTTTTCGTTTGTTTT+TGG - chr1_4:73740962-73740981 None:intergenic 35.0%
TTCAACAACACTATTCAACC+AGG + chr1_4:73741122-73741141 Msa0184360:CDS 35.0%
!!! TGTGGGGTGTTTTTTGTTTT+TGG + chr1_4:73741262-73741281 Msa0184360:intron 35.0%
!!! GTGGGGTGTTTTTTGTTTTT+GGG + chr1_4:73741263-73741282 Msa0184360:intron 35.0%
!!! TGGGGTGTTTTTTGTTTTTG+GGG + chr1_4:73741264-73741283 Msa0184360:intron 35.0%
!! GAGTTTGTGTTTTCTGAGAA+TGG + chr1_4:73741370-73741389 Msa0184360:CDS 35.0%
TGAAAGCTACTCCAATTCTT+AGG + chr1_4:73741407-73741426 Msa0184360:CDS 35.0%
! AAGGGTATAAGAATGGAGTT+TGG + chr1_4:73741464-73741483 Msa0184360:CDS 35.0%
GTTGGAATGTGAGAAAATTG+AGG - chr1_4:73741523-73741542 None:intergenic 35.0%
! TCACATTCCAACCTTTTTGT+TGG + chr1_4:73741531-73741550 Msa0184360:CDS 35.0%
CTTGTAACCAACAAAAAGGT+TGG - chr1_4:73741541-73741560 None:intergenic 35.0%
!! CAACCTTTTTGTTGGTTACA+AGG + chr1_4:73741539-73741558 Msa0184360:CDS 35.0%
! GTTATAGTGCTATTGCATAG+CGG + chr1_4:73741706-73741725 Msa0184360:intron 35.0%
! CATAGCGGAATTTGAACAAA+CGG + chr1_4:73741721-73741740 Msa0184360:intron 35.0%
ACTAAGTTGTTTATCCTGAC+AGG + chr1_4:73742035-73742054 Msa0184360:intron 35.0%
CTAAGTTGTTTATCCTGACA+GGG + chr1_4:73742036-73742055 Msa0184360:intron 35.0%
TAAAGTCCCTACACAAGTAA+CGG + chr1_4:73742212-73742231 Msa0184360:intron 35.0%
TTCTTTATGTATGTGGCCAT+TGG + chr1_4:73742356-73742375 Msa0184360:intron 35.0%
!! TGGTAACTGATTTTTGAACC+CGG + chr1_4:73742376-73742395 Msa0184360:intron 35.0%
TTTCGTAACTGTAAGGAATC+CGG - chr1_4:73742398-73742417 None:intergenic 35.0%
GATTCCTTACAGTTACGAAA+TGG + chr1_4:73742398-73742417 Msa0184360:intron 35.0%
GAAATGGTGCAGTAAATGTT+TGG + chr1_4:73742414-73742433 Msa0184360:intron 35.0%
CTCGGATTTCAAATCGTATT+TGG - chr1_4:73742490-73742509 None:intergenic 35.0%
AGGATGAAAATCAGACAACT+CGG - chr1_4:73742508-73742527 None:intergenic 35.0%
TTGTAGAACAGTTAGGGAAA+TGG - chr1_4:73742574-73742593 None:intergenic 35.0%
ATCATTAAGCAGGTTTGGAA+TGG - chr1_4:73742816-73742835 None:intergenic 35.0%
! GTATCTTTTCGTTCCTTCTT+CGG - chr1_4:73742863-73742882 None:intergenic 35.0%
!!! GCAAGACTTTTTTTAGTGGT+TGG - chr1_4:73742934-73742953 None:intergenic 35.0%
!!! ACAGGCAAGACTTTTTTTAG+TGG - chr1_4:73742938-73742957 None:intergenic 35.0%
GAACAACGTGATAATTGACT+GGG - chr1_4:73743081-73743100 None:intergenic 35.0%
TTGATAAAGTGAGTGTTTGC+AGG + chr1_4:73743269-73743288 Msa0184360:intron 35.0%
!!! TGAGTGTTTGCAGGTTTTTT+AGG + chr1_4:73743278-73743297 Msa0184360:intron 35.0%
GCGTCAAAGAATCTAAATGT+TGG + chr1_4:73743386-73743405 Msa0184360:CDS 35.0%
! AAAAGGAAGTGCAGAGAATT+TGG + chr1_4:73743422-73743441 Msa0184360:CDS 35.0%
AGTGATTTGATCTTCCTATG+AGG - chr1_4:73743461-73743480 None:intergenic 35.0%
! TATCTGAGGCTTCTTTAGAT+AGG + chr1_4:73743716-73743735 Msa0184360:intron 35.0%
AGAGTTTGATAAAACCACAG+TGG + chr1_4:73743800-73743819 Msa0184360:intron 35.0%
! TAGCTTTTGTGCCAAAATCA+CGG + chr1_4:73743852-73743871 Msa0184360:intron 35.0%
GCTTCAGTGTATATTTGGAT+TGG - chr1_4:73743908-73743927 None:intergenic 35.0%
GATAAGAAGGCAAAAGATGT+TGG + chr1_4:73744092-73744111 Msa0184360:CDS 35.0%
AACATCTTGTCTGAATCTCT+TGG - chr1_4:73744172-73744191 None:intergenic 35.0%
!! GACAAGATGTTTTCAAGAGA+AGG + chr1_4:73744181-73744200 Msa0184360:CDS 35.0%
! AGAAGTTGGAGAAAGCATGA+AGG - chr1_4:73741046-73741065 None:intergenic 40.0%
!!! GGGGTGTTTTTTGTTTTTGG+GGG + chr1_4:73741265-73741284 Msa0184360:intron 40.0%
!!! GGGTGTTTTTTGTTTTTGGG+GGG + chr1_4:73741266-73741285 Msa0184360:intron 40.0%
TTTCTCCTCCATCACATTCA+CGG - chr1_4:73741336-73741355 None:intergenic 40.0%
! TGAATGTGATGGAGGAGAAA+AGG + chr1_4:73741336-73741355 Msa0184360:CDS 40.0%
TGATTAAAGCAGGGAAACCT+TGG - chr1_4:73742081-73742100 None:intergenic 40.0%
GGTGTGTACTGTGTACAAAT+TGG + chr1_4:73742137-73742156 Msa0184360:intron 40.0%
TTCGTAACTGTAAGGAATCC+GGG - chr1_4:73742397-73742416 None:intergenic 40.0%
TGCACCATTTCGTAACTGTA+AGG - chr1_4:73742405-73742424 None:intergenic 40.0%
GTGCAGTAAATGTTTGGCAT+TGG + chr1_4:73742420-73742439 Msa0184360:intron 40.0%
TCATCCTACAGTTGCAATTG+CGG + chr1_4:73742521-73742540 Msa0184360:intron 40.0%
GAAGTTAGAATTTGAGGGCA+TGG + chr1_4:73742606-73742625 Msa0184360:intron 40.0%
AGAACATGACAGAGGAAGTT+AGG - chr1_4:73742762-73742781 None:intergenic 40.0%
TTTCAGGAATCCAAAGCTTC+AGG + chr1_4:73742790-73742809 Msa0184360:intron 40.0%
TGGAGATCATTAAGCAGGTT+TGG - chr1_4:73742821-73742840 None:intergenic 40.0%
TCTCCACGTGATATACAAGT+TGG + chr1_4:73742835-73742854 Msa0184360:CDS 40.0%
GTTCCAACTTGTATATCACG+TGG - chr1_4:73742841-73742860 None:intergenic 40.0%
! ATACAAGTTGGAACCGAAGA+AGG + chr1_4:73742847-73742866 Msa0184360:CDS 40.0%
TTGAGATCCTGATTAAGCAC+AGG - chr1_4:73742956-73742975 None:intergenic 40.0%
TCTTCCTTATGAAGAAGACG+AGG + chr1_4:73742979-73742998 Msa0184360:CDS 40.0%
! GGAGCATTTGAATCTAAACC+CGG - chr1_4:73743060-73743079 None:intergenic 40.0%
GGAACAACGTGATAATTGAC+TGG - chr1_4:73743082-73743101 None:intergenic 40.0%
TAAAGCTAGGACTGAGTTGT+TGG - chr1_4:73743124-73743143 None:intergenic 40.0%
AATCTTTGCAACATGGTCAC+TGG - chr1_4:73743321-73743340 None:intergenic 40.0%
TTCTTTGACGCTTCTGCAAT+TGG - chr1_4:73743377-73743396 None:intergenic 40.0%
TTGGGCTTACTGTTCTCAAA+AGG + chr1_4:73743405-73743424 Msa0184360:CDS 40.0%
CAGTCTCATTCATGATCTTC+AGG + chr1_4:73743484-73743503 Msa0184360:CDS 40.0%
GAGTTCACTTAAAGATCGGT+AGG - chr1_4:73743995-73744014 None:intergenic 40.0%
GCGATGTTGTCATGTGTATA+AGG - chr1_4:73744017-73744036 None:intergenic 40.0%
AAGAGGCAAAACATCAGGAA+AGG + chr1_4:73744043-73744062 Msa0184360:CDS 40.0%
AGAGGCAAAACATCAGGAAA+GGG + chr1_4:73744044-73744063 Msa0184360:CDS 40.0%
GAGAAGAAGAGTAATGAGCG+AGG - chr1_4:73741102-73741121 None:intergenic 45.0%
GGTATTGCATTGCATGTACC+TGG - chr1_4:73741143-73741162 None:intergenic 45.0%
CATGTGTACCGTGAATGTGA+TGG + chr1_4:73741325-73741344 Msa0184360:CDS 45.0%
TTGGTCAGGCCTAAAAGCTA+AGG - chr1_4:73742062-73742081 None:intergenic 45.0%
!! TTAGCTTTTAGGCCTGACCA+AGG + chr1_4:73742061-73742080 Msa0184360:intron 45.0%
GATTCGCCGTTACTTGTGTA+GGG - chr1_4:73742221-73742240 None:intergenic 45.0%
TGATTCGCCGTTACTTGTGT+AGG - chr1_4:73742222-73742241 None:intergenic 45.0%
! TGCTGCAAATGTTGACTGCA+GGG + chr1_4:73742545-73742564 Msa0184360:intron 45.0%
! TTGAGGGCATGGTTCAACAA+TGG + chr1_4:73742617-73742636 Msa0184360:intron 45.0%
! TTTGGAATGGCCTGAAGCTT+TGG - chr1_4:73742803-73742822 None:intergenic 45.0%
TCACGTGGAGATCATTAAGC+AGG - chr1_4:73742826-73742845 None:intergenic 45.0%
TCTGCAAGGGAAGAATTGGA+AGG + chr1_4:73742893-73742912 Msa0184360:CDS 45.0%
AGTCTTGCCTGTGCTTAATC+AGG + chr1_4:73742946-73742965 Msa0184360:CDS 45.0%
TCAGCCTCGTCTTCTTCATA+AGG - chr1_4:73742986-73743005 None:intergenic 45.0%
CAGCAGGTTTGAAAGTTCAC+CGG + chr1_4:73743038-73743057 Msa0184360:intron 45.0%
AGCAGGTTTGAAAGTTCACC+GGG + chr1_4:73743039-73743058 Msa0184360:intron 45.0%
GAGAATTTGGTATTCCTCGC+TGG + chr1_4:73743435-73743454 Msa0184360:CDS 45.0%
! CTTTTGTGCCAAAATCACGG+TGG + chr1_4:73743855-73743874 Msa0184360:intron 45.0%
TTGCCTTCTTATCACTGCCA+TGG - chr1_4:73744085-73744104 None:intergenic 45.0%
CATAGAGAAGAGGCTCTTCA+TGG + chr1_4:73744131-73744150 Msa0184360:CDS 45.0%
!! AAATTGAAAAAATAAAAAAT+GGG - chr1_4:73741164-73741183 None:intergenic 5.0%
!! AAAATTGAAAAAATAAAAAA+TGG - chr1_4:73741165-73741184 None:intergenic 5.0%
!!! AAATTTTGATTTTTTTTTAA+TGG + chr1_4:73741201-73741220 Msa0184360:intron 5.0%
!!! AATTTTGATTTTTTTTTAAT+GGG + chr1_4:73741202-73741221 Msa0184360:intron 5.0%
GTGTACCGTGAATGTGATGG+AGG + chr1_4:73741328-73741347 Msa0184360:CDS 50.0%
TAGCAACTATAGCGGCGCTA+TGG + chr1_4:73741787-73741806 Msa0184360:intron 50.0%
CTAAAAGCTAAGGCCCTGTC+AGG - chr1_4:73742052-73742071 None:intergenic 50.0%
!! CTGACAGGGCCTTAGCTTTT+AGG + chr1_4:73742050-73742069 Msa0184360:intron 50.0%
AAAGCAGGGAAACCTTGGTC+AGG - chr1_4:73742076-73742095 None:intergenic 50.0%
CAGCACACAGAGCAGCAAAA+TGG + chr1_4:73742116-73742135 Msa0184360:intron 50.0%
! CTGCTGCAAATGTTGACTGC+AGG + chr1_4:73742544-73742563 Msa0184360:intron 50.0%
GGGCATGGTTCAACAATGGA+TGG + chr1_4:73742621-73742640 Msa0184360:intron 50.0%
ATACACCAGAGAGCTCTGCA+AGG + chr1_4:73742879-73742898 Msa0184360:CDS 50.0%
TACACCAGAGAGCTCTGCAA+GGG + chr1_4:73742880-73742899 Msa0184360:CDS 50.0%
GAGCTCTGCAAGGGAAGAAT+TGG + chr1_4:73742889-73742908 Msa0184360:CDS 50.0%
AGAAGACGAGGCTGAGTTAC+TGG + chr1_4:73742991-73743010 Msa0184360:CDS 50.0%
!! ACAAAATCACGGTGCCACTG+TGG - chr1_4:73743817-73743836 None:intergenic 50.0%
ACACATGACAACATCGCTGC+AGG + chr1_4:73744020-73744039 Msa0184360:intron 50.0%
GCAGGAAGAGGCAAAACATC+AGG + chr1_4:73744038-73744057 Msa0184360:intron 50.0%
GGCAAAACATCAGGAAAGGG+AGG + chr1_4:73744047-73744066 Msa0184360:CDS 50.0%
GGAGGATAAAGATGCAGCCA+TGG + chr1_4:73744065-73744084 Msa0184360:CDS 50.0%
CAGCCATGGCAGTGATAAGA+AGG + chr1_4:73744079-73744098 Msa0184360:CDS 50.0%
GCAGCCGCAATTGCAACTGT+AGG - chr1_4:73742528-73742547 None:intergenic 55.0%
TCTTCCCTTGCAGAGCTCTC+TGG - chr1_4:73742887-73742906 None:intergenic 55.0%
! GTATTCCTCGCTGGCCTCAT+AGG + chr1_4:73743444-73743463 Msa0184360:CDS 55.0%
ATCTTCCTATGAGGCCAGCG+AGG - chr1_4:73743452-73743471 None:intergenic 55.0%
! ACGGTGAGCCACCGTGATTT+TGG - chr1_4:73743866-73743885 None:intergenic 55.0%
CGTTGAGACTGCCCGAATCA+CGG - chr1_4:73743885-73743904 None:intergenic 55.0%
GACAACATCGCTGCAGGAAG+AGG + chr1_4:73744026-73744045 Msa0184360:intron 55.0%
GGCGCTATGGCAGTGTTGCA+TGG + chr1_4:73741800-73741819 Msa0184360:intron 60.0%
CACGGTGGCTCACCGTGATT+CGG + chr1_4:73743870-73743889 Msa0184360:intron 60.0%
ACGGTGGCTCACCGTGATTC+GGG + chr1_4:73743871-73743890 Msa0184360:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 73740934 73744266 73740934 ID=Msa0184360;Name=Msa0184360
chr1_4 mRNA 73740934 73744266 73740934 ID=Msa0184360-mRNA-1;Parent=Msa0184360;Name=Msa0184360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|1|0.8|1|1|1|5|0|330
chr1_4 exon 73740934 73741143 73740934 ID=Msa0184360-mRNA-1:exon:25116;Parent=Msa0184360-mRNA-1
chr1_4 exon 73741308 73741560 73741308 ID=Msa0184360-mRNA-1:exon:25117;Parent=Msa0184360-mRNA-1
chr1_4 exon 73742796 73743043 73742796 ID=Msa0184360-mRNA-1:exon:25118;Parent=Msa0184360-mRNA-1
chr1_4 exon 73743291 73743505 73743291 ID=Msa0184360-mRNA-1:exon:25119;Parent=Msa0184360-mRNA-1
chr1_4 exon 73744042 73744266 73744042 ID=Msa0184360-mRNA-1:exon:25120;Parent=Msa0184360-mRNA-1
chr1_4 five_prime_UTR 73740934 73741091 73740934 ID=Msa0184360-mRNA-1:five_prime_utr;Parent=Msa0184360-mRNA-1
chr1_4 CDS 73741092 73741143 73741092 ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1
chr1_4 CDS 73741308 73741560 73741308 ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1
chr1_4 CDS 73742796 73743043 73742796 ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1
chr1_4 CDS 73743291 73743505 73743291 ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1
chr1_4 CDS 73744042 73744266 73744042 ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1
Gene Sequence

>Msa0184360

ATGGATTCCTCGCTCATTACTCTTCTTCTCTTCAACAACACTATTCAACCAGAGTTGATGAGAAGCGTGCATGTGTACCGTGAATGTGATGGAGGAGAAAAGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAGAATGGTTCTTATGTTGAAATGAAAGCTACTCCAATTCTTAGGTTGTTGAAATCTTTTGTTTCTGAAGAGATTTTTGAAGGGTATAAGAATGGAGTTTGGCTTTGTGTTTTTGCTTTTCATGCTTGTAATGTCCCTCAATTTTCTCACATTCCAACCTTTTTGTTGGTTACAAGGAATCCAAAGCTTCAGGCCATTCCAAACCTGCTTAATGATCTCCACGTGATATACAAGTTGGAACCGAAGAAGGAACGAAAAGATACACCAGAGAGCTCTGCAAGGGAAGAATTGGAAGGAAACAACAATGATTTCCAACCACTAAAAAAAGTCTTGCCTGTGCTTAATCAGGATCTCAATTTTCTTCCTTATGAAGAAGACGAGGCTGAGTTACTGGATGATGAGACAAATTTTGAAAGTTCAGCAGGTTTTTTAGGAAAGAAAAAGAGGGCAGCCAGTGACCATGTTGCAAAGATTACTTTATCAGATTTGGCCAAGTACTTTGATATGCCAATTGCAGAAGCGTCAAAGAATCTAAATGTTGGGCTTACTGTTCTCAAAAGGAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTCGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAACATCAGGAAAGGGAGGATAAAGATGCAGCCATGGCAGTGATAAGAAGGCAAAAGATGTTGGAAAGTGAAAAGGAAAACATAGAGAAGAGGCTCTTCATGGACATTCAGATTGAGACCAAGAGATTCAGACAAGATGTTTTCAAGAGAAGGCACAGAGCTAGAGTTATTGAAAACAGAATTCTACAGTTGCAAGCACCTAAACCTAGCAATTAG

Protein sequence

>Msa0184360

MDSSLITLLLFNNTIQPELMRSVHVYRECDGGEKEVEREFVFSENGSYVEMKATPILRLLKSFVSEEIFEGYKNGVWLCVFAFHACNVPQFSHIPTFLLVTRNPKLQAIPNLLNDLHVIYKLEPKKERKDTPESSAREELEGNNNDFQPLKKVLPVLNQDLNFLPYEEDEAELLDDETNFESSAGFLGKKKRAASDHVAKITLSDLAKYFDMPIAEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEREDKDAAMAVIRRQKMLESEKENIEKRLFMDIQIETKRFRQDVFKRRHRARVIENRILQLQAPKPSN*