Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184360 | XP_003612350.1 | 94.545 | 330 | 18 | 0 | 1 | 330 | 1 | 330 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184360 | sp|O81791|RKD5_ARATH | 50.000 | 328 | 136 | 9 | 1 | 313 | 40 | 354 | 1.86e-89 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184360 | G7K041 | 94.545 | 330 | 18 | 0 | 1 | 330 | 1 | 330 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0184360 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184360 | Msa0839010 | 0.990199 | 1.636171e-181 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184360 | MtrunA17_Chr5g0406901 | 94.545 | 330 | 18 | 0 | 1 | 330 | 1 | 330 | 0.0 | 637 |
| Msa0184360 | MtrunA17_Chr3g0092141 | 36.296 | 135 | 78 | 2 | 181 | 314 | 38 | 165 | 8.46e-22 | 91.3 |
| Msa0184360 | MtrunA17_Chr4g0060761 | 36.090 | 133 | 81 | 1 | 191 | 323 | 145 | 273 | 1.45e-21 | 92.4 |
| Msa0184360 | MtrunA17_Chr3g0127001 | 37.600 | 125 | 60 | 2 | 190 | 314 | 148 | 254 | 3.31e-19 | 85.9 |
| Msa0184360 | MtrunA17_Chr1g0182631 | 37.594 | 133 | 63 | 3 | 182 | 314 | 115 | 227 | 5.09e-19 | 84.7 |
| Msa0184360 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 199 | 283 | 414 | 497 | 1.14e-13 | 71.6 |
| Msa0184360 | MtrunA17_Chr3g0143921 | 45.122 | 82 | 41 | 2 | 177 | 256 | 570 | 649 | 1.05e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184360 | AT4G35590.1 | 50.000 | 328 | 136 | 9 | 1 | 313 | 40 | 354 | 1.89e-90 | 275 |
| Msa0184360 | AT4G35590.2 | 50.318 | 314 | 128 | 9 | 15 | 313 | 4 | 304 | 2.98e-87 | 265 |
| Msa0184360 | AT1G74480.1 | 45.217 | 115 | 58 | 2 | 199 | 311 | 131 | 242 | 4.32e-22 | 94.7 |
| Msa0184360 | AT1G18790.1 | 43.802 | 121 | 62 | 3 | 194 | 312 | 120 | 236 | 5.27e-22 | 94.0 |
| Msa0184360 | AT5G66990.1 | 41.818 | 110 | 60 | 2 | 206 | 314 | 164 | 270 | 7.31e-20 | 88.2 |
| Msa0184360 | AT5G53040.1 | 41.739 | 115 | 54 | 1 | 200 | 314 | 147 | 248 | 1.27e-19 | 87.0 |
| Msa0184360 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 193 | 256 | 346 | 409 | 1.33e-13 | 71.6 |
Find 60 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 1_4:+73743334 | Msa0184360:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 1_4:+73743422 | Msa0184360:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 1_4:+73741407 | Msa0184360:CDS |
| AGAAGACGAGGCTGAGTTAC+TGG | 0.328138 | 1_4:+73742991 | Msa0184360:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 1_4:+73743484 | Msa0184360:CDS |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 1_4:-73743374 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 1_4:-73742800 | None:intergenic |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 1_4:+73742790 | Msa0184360:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 1_4:+73742889 | Msa0184360:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 1_4:-73741542 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 1_4:-73741418 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 1_4:+73743444 | Msa0184360:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 1_4:+73741464 | Msa0184360:CDS |
| AGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 1_4:-73744249 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.387896 | 1_4:+73742946 | Msa0184360:CDS |
| GAAAATGAAGAAGAAGAAGT+TGG | 0.392727 | 1_4:-73741057 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 1_4:-73742884 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.397862 | 1_4:-73742818 | None:intergenic |
| CATAGAGAAGAGGCTCTTCA+TGG | 0.402183 | 1_4:+73744131 | Msa0184360:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 1_4:-73741333 | None:intergenic |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 1_4:+73743387 | Msa0184360:CDS |
| TTGCCTTCTTATCACTGCCA+TGG | 0.457172 | 1_4:-73744082 | None:intergenic |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 1_4:+73744104 | Msa0184360:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 1_4:+73743405 | Msa0184360:CDS |
| TCAGCCTCGTCTTCTTCATA+AGG | 0.476498 | 1_4:-73742983 | None:intergenic |
| AACATCTTGTCTGAATCTCT+TGG | 0.478887 | 1_4:-73744169 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 1_4:+73743435 | Msa0184360:CDS |
| CAGCCATGGCAGTGATAAGA+AGG | 0.499451 | 1_4:+73744079 | Msa0184360:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 1_4:+73744038 | Msa0184360:intron |
| GATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 1_4:+73744092 | Msa0184360:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 1_4:-73742813 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 1_4:-73743357 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 1_4:-73741043 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 1_4:+73741336 | Msa0184360:CDS |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 1_4:-73743318 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 1_4:-73741519 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 1_4:+73742847 | Msa0184360:CDS |
| TCACGTGGAGATCATTAAGC+AGG | 0.532780 | 1_4:-73742823 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 1_4:+73744044 | Msa0184360:CDS |
| ATCAGAAGATGCTAATTGCT+AGG | 0.535738 | 1_4:-73744255 | None:intergenic |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 1_4:+73743386 | Msa0184360:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 1_4:-73741520 | None:intergenic |
| TCTCCACGTGATATACAAGT+TGG | 0.555482 | 1_4:+73742835 | Msa0184360:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 1_4:+73744043 | Msa0184360:CDS |
| AAAAGGAAAACATAGAGAAG+AGG | 0.578123 | 1_4:+73744121 | Msa0184360:CDS |
| TTGAGATCCTGATTAAGCAC+AGG | 0.580889 | 1_4:-73742953 | None:intergenic |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 1_4:-73741099 | None:intergenic |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 1_4:+73744065 | Msa0184360:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 1_4:-73743458 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 1_4:+73744047 | Msa0184360:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 1_4:+73742880 | Msa0184360:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 1_4:+73741325 | Msa0184360:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 1_4:+73742879 | Msa0184360:CDS |
| TCTTCCTTATGAAGAAGACG+AGG | 0.662936 | 1_4:+73742979 | Msa0184360:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 1_4:-73743325 | None:intergenic |
| TTCAACAACACTATTCAACC+AGG | 0.665257 | 1_4:+73741122 | Msa0184360:CDS |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 1_4:-73743449 | None:intergenic |
| GTTCCAACTTGTATATCACG+TGG | 0.670645 | 1_4:-73742838 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 1_4:+73742893 | Msa0184360:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 1_4:+73741328 | Msa0184360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | + | chr1_4:73743142-73743161 | Msa0184360:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | - | chr1_4:73743517-73743536 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | - | chr1_4:73741581-73741600 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | - | chr1_4:73741582-73741601 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | + | chr1_4:73741609-73741628 | Msa0184360:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | + | chr1_4:73743150-73743169 | Msa0184360:intron | 15.0% |
| !!! | TTTTTTTGTTGTTTTGTTTG+TGG | + | chr1_4:73741244-73741263 | Msa0184360:intron | 20.0% |
| !!! | TTTTTTGTTGTTTTGTTTGT+GGG | + | chr1_4:73741245-73741264 | Msa0184360:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | + | chr1_4:73741608-73741627 | Msa0184360:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | - | chr1_4:73742090-73742109 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | - | chr1_4:73742164-73742183 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | - | chr1_4:73742165-73742184 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | + | chr1_4:73742349-73742368 | Msa0184360:intron | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | + | chr1_4:73742732-73742751 | Msa0184360:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | - | chr1_4:73743137-73743156 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | + | chr1_4:73743292-73743311 | Msa0184360:CDS | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | + | chr1_4:73743334-73743353 | Msa0184360:CDS | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | - | chr1_4:73743677-73743696 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | + | chr1_4:73743702-73743721 | Msa0184360:intron | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | - | chr1_4:73743828-73743847 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | - | chr1_4:73743930-73743949 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTTTGTTTGTG+GGG | + | chr1_4:73741246-73741265 | Msa0184360:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | + | chr1_4:73741446-73741465 | Msa0184360:CDS | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | + | chr1_4:73741457-73741476 | Msa0184360:CDS | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | + | chr1_4:73741673-73741692 | Msa0184360:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | - | chr1_4:73742091-73742110 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | - | chr1_4:73742307-73742326 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | + | chr1_4:73742774-73742793 | Msa0184360:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | - | chr1_4:73743226-73743245 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | + | chr1_4:73743291-73743310 | Msa0184360:CDS | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | - | chr1_4:73743328-73743347 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | - | chr1_4:73743591-73743610 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | - | chr1_4:73743616-73743635 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | + | chr1_4:73743666-73743685 | Msa0184360:intron | 25.0% |
| ! | GTACAGAAAATATTTGTACA+AGG | - | chr1_4:73743745-73743764 | None:intergenic | 25.0% |
| ! | GTTGTCAATTAGTATATGTT+TGG | + | chr1_4:73743769-73743788 | Msa0184360:intron | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | + | chr1_4:73740959-73740978 | Msa0184360:five_prime_UTR | 30.0% | |
| GAAAATGAAGAAGAAGAAGT+TGG | - | chr1_4:73741060-73741079 | None:intergenic | 30.0% | |
| ! | CATTTTCATCTTCATCTTCA+TGG | + | chr1_4:73741073-73741092 | Msa0184360:exon | 30.0% |
| GATTTCAACAACCTAAGAAT+TGG | - | chr1_4:73741421-73741440 | None:intergenic | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | + | chr1_4:73741445-73741464 | Msa0184360:CDS | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | - | chr1_4:73741522-73741541 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | - | chr1_4:73741545-73741564 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | + | chr1_4:73741618-73741637 | Msa0184360:intron | 30.0% |
| TAGCCGCTATTTAAAAACAT+TGG | - | chr1_4:73741679-73741698 | None:intergenic | 30.0% | |
| ! | TTTTTAAATAGCGGCTATAG+CGG | + | chr1_4:73741682-73741701 | Msa0184360:intron | 30.0% |
| TTATACAAAACAGTGTATCG+TGG | - | chr1_4:73741755-73741774 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | + | chr1_4:73741779-73741798 | Msa0184360:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr1_4:73741942-73741961 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | - | chr1_4:73742375-73742394 | None:intergenic | 30.0% | |
| AGTATGTTGTAGAACAGTTA+GGG | - | chr1_4:73742580-73742599 | None:intergenic | 30.0% | |
| AAGTATGTTGTAGAACAGTT+AGG | - | chr1_4:73742581-73742600 | None:intergenic | 30.0% | |
| ! | ACTGTTCTACAACATACTTT+TGG | + | chr1_4:73742582-73742601 | Msa0184360:intron | 30.0% |
| TTTGGAGAAGTTAGAATTTG+AGG | + | chr1_4:73742600-73742619 | Msa0184360:intron | 30.0% | |
| TTGGAGAAGTTAGAATTTGA+GGG | + | chr1_4:73742601-73742620 | Msa0184360:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | - | chr1_4:73742770-73742789 | None:intergenic | 30.0% | |
| !! | ACAAATTTTGAAAGTTCAGC+AGG | + | chr1_4:73743022-73743041 | Msa0184360:CDS | 30.0% |
| GGAATAAAATGTTCAAAAGC+AGG | - | chr1_4:73743103-73743122 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | - | chr1_4:73743209-73743228 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | - | chr1_4:73743360-73743379 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | + | chr1_4:73743387-73743406 | Msa0184360:CDS | 30.0% | |
| TATAGGCTTCAGTGTATATT+TGG | - | chr1_4:73743913-73743932 | None:intergenic | 30.0% | |
| ! | ACTGAAGCCTATAAAGTATT+TGG | + | chr1_4:73743920-73743939 | Msa0184360:intron | 30.0% |
| TAAGGAGTTCACTTAAAGAT+CGG | - | chr1_4:73743999-73744018 | None:intergenic | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | + | chr1_4:73744104-73744123 | Msa0184360:CDS | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | + | chr1_4:73744121-73744140 | Msa0184360:CDS | 30.0% | |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | - | chr1_4:73740962-73740981 | None:intergenic | 35.0% |
| TTCAACAACACTATTCAACC+AGG | + | chr1_4:73741122-73741141 | Msa0184360:CDS | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | + | chr1_4:73741262-73741281 | Msa0184360:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | + | chr1_4:73741263-73741282 | Msa0184360:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | + | chr1_4:73741264-73741283 | Msa0184360:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | + | chr1_4:73741370-73741389 | Msa0184360:CDS | 35.0% |
| TGAAAGCTACTCCAATTCTT+AGG | + | chr1_4:73741407-73741426 | Msa0184360:CDS | 35.0% | |
| ! | AAGGGTATAAGAATGGAGTT+TGG | + | chr1_4:73741464-73741483 | Msa0184360:CDS | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | - | chr1_4:73741523-73741542 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | + | chr1_4:73741531-73741550 | Msa0184360:CDS | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | - | chr1_4:73741541-73741560 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | + | chr1_4:73741539-73741558 | Msa0184360:CDS | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | + | chr1_4:73741706-73741725 | Msa0184360:intron | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | + | chr1_4:73741721-73741740 | Msa0184360:intron | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | + | chr1_4:73742035-73742054 | Msa0184360:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | + | chr1_4:73742036-73742055 | Msa0184360:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | + | chr1_4:73742212-73742231 | Msa0184360:intron | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | + | chr1_4:73742356-73742375 | Msa0184360:intron | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | + | chr1_4:73742376-73742395 | Msa0184360:intron | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | - | chr1_4:73742398-73742417 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | + | chr1_4:73742398-73742417 | Msa0184360:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | + | chr1_4:73742414-73742433 | Msa0184360:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | - | chr1_4:73742490-73742509 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | - | chr1_4:73742508-73742527 | None:intergenic | 35.0% | |
| TTGTAGAACAGTTAGGGAAA+TGG | - | chr1_4:73742574-73742593 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | - | chr1_4:73742816-73742835 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | - | chr1_4:73742863-73742882 | None:intergenic | 35.0% |
| !!! | GCAAGACTTTTTTTAGTGGT+TGG | - | chr1_4:73742934-73742953 | None:intergenic | 35.0% |
| !!! | ACAGGCAAGACTTTTTTTAG+TGG | - | chr1_4:73742938-73742957 | None:intergenic | 35.0% |
| GAACAACGTGATAATTGACT+GGG | - | chr1_4:73743081-73743100 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | + | chr1_4:73743269-73743288 | Msa0184360:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | + | chr1_4:73743278-73743297 | Msa0184360:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | + | chr1_4:73743386-73743405 | Msa0184360:CDS | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | + | chr1_4:73743422-73743441 | Msa0184360:CDS | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | - | chr1_4:73743461-73743480 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | + | chr1_4:73743716-73743735 | Msa0184360:intron | 35.0% |
| AGAGTTTGATAAAACCACAG+TGG | + | chr1_4:73743800-73743819 | Msa0184360:intron | 35.0% | |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | + | chr1_4:73743852-73743871 | Msa0184360:intron | 35.0% |
| GCTTCAGTGTATATTTGGAT+TGG | - | chr1_4:73743908-73743927 | None:intergenic | 35.0% | |
| GATAAGAAGGCAAAAGATGT+TGG | + | chr1_4:73744092-73744111 | Msa0184360:CDS | 35.0% | |
| AACATCTTGTCTGAATCTCT+TGG | - | chr1_4:73744172-73744191 | None:intergenic | 35.0% | |
| !! | GACAAGATGTTTTCAAGAGA+AGG | + | chr1_4:73744181-73744200 | Msa0184360:CDS | 35.0% |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | - | chr1_4:73741046-73741065 | None:intergenic | 40.0% |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | + | chr1_4:73741265-73741284 | Msa0184360:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | + | chr1_4:73741266-73741285 | Msa0184360:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | - | chr1_4:73741336-73741355 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | + | chr1_4:73741336-73741355 | Msa0184360:CDS | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | - | chr1_4:73742081-73742100 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | + | chr1_4:73742137-73742156 | Msa0184360:intron | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | - | chr1_4:73742397-73742416 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | - | chr1_4:73742405-73742424 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | + | chr1_4:73742420-73742439 | Msa0184360:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | + | chr1_4:73742521-73742540 | Msa0184360:intron | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | + | chr1_4:73742606-73742625 | Msa0184360:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | - | chr1_4:73742762-73742781 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | + | chr1_4:73742790-73742809 | Msa0184360:intron | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | - | chr1_4:73742821-73742840 | None:intergenic | 40.0% | |
| TCTCCACGTGATATACAAGT+TGG | + | chr1_4:73742835-73742854 | Msa0184360:CDS | 40.0% | |
| GTTCCAACTTGTATATCACG+TGG | - | chr1_4:73742841-73742860 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | + | chr1_4:73742847-73742866 | Msa0184360:CDS | 40.0% |
| TTGAGATCCTGATTAAGCAC+AGG | - | chr1_4:73742956-73742975 | None:intergenic | 40.0% | |
| TCTTCCTTATGAAGAAGACG+AGG | + | chr1_4:73742979-73742998 | Msa0184360:CDS | 40.0% | |
| ! | GGAGCATTTGAATCTAAACC+CGG | - | chr1_4:73743060-73743079 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | - | chr1_4:73743082-73743101 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | - | chr1_4:73743124-73743143 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | - | chr1_4:73743321-73743340 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | - | chr1_4:73743377-73743396 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | + | chr1_4:73743405-73743424 | Msa0184360:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | + | chr1_4:73743484-73743503 | Msa0184360:CDS | 40.0% | |
| GAGTTCACTTAAAGATCGGT+AGG | - | chr1_4:73743995-73744014 | None:intergenic | 40.0% | |
| GCGATGTTGTCATGTGTATA+AGG | - | chr1_4:73744017-73744036 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | + | chr1_4:73744043-73744062 | Msa0184360:CDS | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | + | chr1_4:73744044-73744063 | Msa0184360:CDS | 40.0% | |
| GAGAAGAAGAGTAATGAGCG+AGG | - | chr1_4:73741102-73741121 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | - | chr1_4:73741143-73741162 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | + | chr1_4:73741325-73741344 | Msa0184360:CDS | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | - | chr1_4:73742062-73742081 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | + | chr1_4:73742061-73742080 | Msa0184360:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | - | chr1_4:73742221-73742240 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | - | chr1_4:73742222-73742241 | None:intergenic | 45.0% | |
| ! | TGCTGCAAATGTTGACTGCA+GGG | + | chr1_4:73742545-73742564 | Msa0184360:intron | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | + | chr1_4:73742617-73742636 | Msa0184360:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | - | chr1_4:73742803-73742822 | None:intergenic | 45.0% |
| TCACGTGGAGATCATTAAGC+AGG | - | chr1_4:73742826-73742845 | None:intergenic | 45.0% | |
| TCTGCAAGGGAAGAATTGGA+AGG | + | chr1_4:73742893-73742912 | Msa0184360:CDS | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | + | chr1_4:73742946-73742965 | Msa0184360:CDS | 45.0% | |
| TCAGCCTCGTCTTCTTCATA+AGG | - | chr1_4:73742986-73743005 | None:intergenic | 45.0% | |
| CAGCAGGTTTGAAAGTTCAC+CGG | + | chr1_4:73743038-73743057 | Msa0184360:intron | 45.0% | |
| AGCAGGTTTGAAAGTTCACC+GGG | + | chr1_4:73743039-73743058 | Msa0184360:intron | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | + | chr1_4:73743435-73743454 | Msa0184360:CDS | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | + | chr1_4:73743855-73743874 | Msa0184360:intron | 45.0% |
| TTGCCTTCTTATCACTGCCA+TGG | - | chr1_4:73744085-73744104 | None:intergenic | 45.0% | |
| CATAGAGAAGAGGCTCTTCA+TGG | + | chr1_4:73744131-73744150 | Msa0184360:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | - | chr1_4:73741164-73741183 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | - | chr1_4:73741165-73741184 | None:intergenic | 5.0% |
| !!! | AAATTTTGATTTTTTTTTAA+TGG | + | chr1_4:73741201-73741220 | Msa0184360:intron | 5.0% |
| !!! | AATTTTGATTTTTTTTTAAT+GGG | + | chr1_4:73741202-73741221 | Msa0184360:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | + | chr1_4:73741328-73741347 | Msa0184360:CDS | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | + | chr1_4:73741787-73741806 | Msa0184360:intron | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | - | chr1_4:73742052-73742071 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | + | chr1_4:73742050-73742069 | Msa0184360:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | - | chr1_4:73742076-73742095 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | + | chr1_4:73742116-73742135 | Msa0184360:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | + | chr1_4:73742544-73742563 | Msa0184360:intron | 50.0% |
| GGGCATGGTTCAACAATGGA+TGG | + | chr1_4:73742621-73742640 | Msa0184360:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | + | chr1_4:73742879-73742898 | Msa0184360:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | + | chr1_4:73742880-73742899 | Msa0184360:CDS | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | + | chr1_4:73742889-73742908 | Msa0184360:CDS | 50.0% | |
| AGAAGACGAGGCTGAGTTAC+TGG | + | chr1_4:73742991-73743010 | Msa0184360:CDS | 50.0% | |
| !! | ACAAAATCACGGTGCCACTG+TGG | - | chr1_4:73743817-73743836 | None:intergenic | 50.0% |
| ACACATGACAACATCGCTGC+AGG | + | chr1_4:73744020-73744039 | Msa0184360:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | + | chr1_4:73744038-73744057 | Msa0184360:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | + | chr1_4:73744047-73744066 | Msa0184360:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | + | chr1_4:73744065-73744084 | Msa0184360:CDS | 50.0% | |
| CAGCCATGGCAGTGATAAGA+AGG | + | chr1_4:73744079-73744098 | Msa0184360:CDS | 50.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | - | chr1_4:73742528-73742547 | None:intergenic | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | - | chr1_4:73742887-73742906 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | + | chr1_4:73743444-73743463 | Msa0184360:CDS | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | - | chr1_4:73743452-73743471 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | - | chr1_4:73743866-73743885 | None:intergenic | 55.0% |
| CGTTGAGACTGCCCGAATCA+CGG | - | chr1_4:73743885-73743904 | None:intergenic | 55.0% | |
| GACAACATCGCTGCAGGAAG+AGG | + | chr1_4:73744026-73744045 | Msa0184360:intron | 55.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | + | chr1_4:73741800-73741819 | Msa0184360:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | + | chr1_4:73743870-73743889 | Msa0184360:intron | 60.0% | |
| ACGGTGGCTCACCGTGATTC+GGG | + | chr1_4:73743871-73743890 | Msa0184360:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 73740934 | 73744266 | 73740934 | ID=Msa0184360;Name=Msa0184360 |
| chr1_4 | mRNA | 73740934 | 73744266 | 73740934 | ID=Msa0184360-mRNA-1;Parent=Msa0184360;Name=Msa0184360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|1|0.8|1|1|1|5|0|330 |
| chr1_4 | exon | 73740934 | 73741143 | 73740934 | ID=Msa0184360-mRNA-1:exon:25116;Parent=Msa0184360-mRNA-1 |
| chr1_4 | exon | 73741308 | 73741560 | 73741308 | ID=Msa0184360-mRNA-1:exon:25117;Parent=Msa0184360-mRNA-1 |
| chr1_4 | exon | 73742796 | 73743043 | 73742796 | ID=Msa0184360-mRNA-1:exon:25118;Parent=Msa0184360-mRNA-1 |
| chr1_4 | exon | 73743291 | 73743505 | 73743291 | ID=Msa0184360-mRNA-1:exon:25119;Parent=Msa0184360-mRNA-1 |
| chr1_4 | exon | 73744042 | 73744266 | 73744042 | ID=Msa0184360-mRNA-1:exon:25120;Parent=Msa0184360-mRNA-1 |
| chr1_4 | five_prime_UTR | 73740934 | 73741091 | 73740934 | ID=Msa0184360-mRNA-1:five_prime_utr;Parent=Msa0184360-mRNA-1 |
| chr1_4 | CDS | 73741092 | 73741143 | 73741092 | ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1 |
| chr1_4 | CDS | 73741308 | 73741560 | 73741308 | ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1 |
| chr1_4 | CDS | 73742796 | 73743043 | 73742796 | ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1 |
| chr1_4 | CDS | 73743291 | 73743505 | 73743291 | ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1 |
| chr1_4 | CDS | 73744042 | 73744266 | 73744042 | ID=Msa0184360-mRNA-1:cds;Parent=Msa0184360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
