Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839010 | XP_003612350.1 | 94.545 | 330 | 18 | 0 | 1 | 330 | 1 | 330 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839010 | sp|O81791|RKD5_ARATH | 50.000 | 328 | 136 | 9 | 1 | 313 | 40 | 354 | 1.86e-89 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839010 | G7K041 | 94.545 | 330 | 18 | 0 | 1 | 330 | 1 | 330 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0839010 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184360 | Msa0839010 | 0.990199 | 1.636171e-181 | -8.615850e-47 |
| Msa0576940 | Msa0839010 | 0.801416 | 9.095844e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839010 | MtrunA17_Chr5g0406901 | 94.545 | 330 | 18 | 0 | 1 | 330 | 1 | 330 | 0.0 | 637 |
| Msa0839010 | MtrunA17_Chr3g0092141 | 36.296 | 135 | 78 | 2 | 181 | 314 | 38 | 165 | 8.46e-22 | 91.3 |
| Msa0839010 | MtrunA17_Chr4g0060761 | 36.090 | 133 | 81 | 1 | 191 | 323 | 145 | 273 | 1.45e-21 | 92.4 |
| Msa0839010 | MtrunA17_Chr3g0127001 | 37.600 | 125 | 60 | 2 | 190 | 314 | 148 | 254 | 3.31e-19 | 85.9 |
| Msa0839010 | MtrunA17_Chr1g0182631 | 37.594 | 133 | 63 | 3 | 182 | 314 | 115 | 227 | 5.09e-19 | 84.7 |
| Msa0839010 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 199 | 283 | 414 | 497 | 1.14e-13 | 71.6 |
| Msa0839010 | MtrunA17_Chr3g0143921 | 45.122 | 82 | 41 | 2 | 177 | 256 | 570 | 649 | 1.05e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839010 | AT4G35590.1 | 50.000 | 328 | 136 | 9 | 1 | 313 | 40 | 354 | 1.89e-90 | 275 |
| Msa0839010 | AT4G35590.2 | 50.318 | 314 | 128 | 9 | 15 | 313 | 4 | 304 | 2.98e-87 | 265 |
| Msa0839010 | AT1G74480.1 | 45.217 | 115 | 58 | 2 | 199 | 311 | 131 | 242 | 4.32e-22 | 94.7 |
| Msa0839010 | AT1G18790.1 | 43.802 | 121 | 62 | 3 | 194 | 312 | 120 | 236 | 5.27e-22 | 94.0 |
| Msa0839010 | AT5G66990.1 | 41.818 | 110 | 60 | 2 | 206 | 314 | 164 | 270 | 7.31e-20 | 88.2 |
| Msa0839010 | AT5G53040.1 | 41.739 | 115 | 54 | 1 | 200 | 314 | 147 | 248 | 1.27e-19 | 87.0 |
| Msa0839010 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 193 | 256 | 346 | 409 | 1.33e-13 | 71.6 |
Find 60 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5_4:+13621895 | Msa0839010:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5_4:+13621983 | Msa0839010:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5_4:+13619968 | Msa0839010:CDS |
| AGAAGACGAGGCTGAGTTAC+TGG | 0.328138 | 5_4:+13621552 | Msa0839010:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5_4:+13622045 | Msa0839010:CDS |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 5_4:-13621935 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5_4:-13621361 | None:intergenic |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5_4:+13621351 | Msa0839010:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5_4:+13621450 | Msa0839010:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5_4:-13620103 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5_4:-13619979 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5_4:+13622005 | Msa0839010:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5_4:+13620025 | Msa0839010:CDS |
| AGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5_4:-13622810 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.387896 | 5_4:+13621507 | Msa0839010:CDS |
| GAAAATGAAGAAGAAGAAGT+TGG | 0.392727 | 5_4:-13619618 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5_4:-13621445 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.397862 | 5_4:-13621379 | None:intergenic |
| CATAGAGAAGAGGCTCTTCA+TGG | 0.402183 | 5_4:+13622692 | Msa0839010:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5_4:-13619894 | None:intergenic |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5_4:+13621948 | Msa0839010:CDS |
| TTGCCTTCTTATCACTGCCA+TGG | 0.457172 | 5_4:-13622643 | None:intergenic |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5_4:+13622665 | Msa0839010:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5_4:+13621966 | Msa0839010:CDS |
| TCAGCCTCGTCTTCTTCATA+AGG | 0.476498 | 5_4:-13621544 | None:intergenic |
| AACATCTTGTCTGAATCTCT+TGG | 0.478887 | 5_4:-13622730 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5_4:+13621996 | Msa0839010:CDS |
| CAGCCATGGCAGTGATAAGA+AGG | 0.499451 | 5_4:+13622640 | Msa0839010:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 5_4:+13622599 | Msa0839010:intron |
| GATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5_4:+13622653 | Msa0839010:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 5_4:-13621374 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 5_4:-13621918 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 5_4:-13619604 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5_4:+13619897 | Msa0839010:CDS |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5_4:-13621879 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5_4:-13620080 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5_4:+13621408 | Msa0839010:CDS |
| TCACGTGGAGATCATTAAGC+AGG | 0.532780 | 5_4:-13621384 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5_4:+13622605 | Msa0839010:CDS |
| ATCAGAAGATGCTAATTGCT+AGG | 0.535738 | 5_4:-13622816 | None:intergenic |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 5_4:+13621947 | Msa0839010:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5_4:-13620081 | None:intergenic |
| TCTCCACGTGATATACAAGT+TGG | 0.555482 | 5_4:+13621396 | Msa0839010:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5_4:+13622604 | Msa0839010:CDS |
| AAAAGGAAAACATAGAGAAG+AGG | 0.578123 | 5_4:+13622682 | Msa0839010:CDS |
| TTGAGATCCTGATTAAGCAC+AGG | 0.580889 | 5_4:-13621514 | None:intergenic |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 5_4:-13619660 | None:intergenic |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5_4:+13622626 | Msa0839010:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5_4:-13622019 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5_4:+13622608 | Msa0839010:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5_4:+13621441 | Msa0839010:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5_4:+13619886 | Msa0839010:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5_4:+13621440 | Msa0839010:CDS |
| TCTTCCTTATGAAGAAGACG+AGG | 0.662936 | 5_4:+13621540 | Msa0839010:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5_4:-13621886 | None:intergenic |
| TTCAACAACACTATTCAACC+AGG | 0.665257 | 5_4:+13619683 | Msa0839010:CDS |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5_4:-13622010 | None:intergenic |
| GTTCCAACTTGTATATCACG+TGG | 0.670645 | 5_4:-13621399 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5_4:+13621454 | Msa0839010:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5_4:+13619889 | Msa0839010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | + | chr5_4:13621703-13621722 | Msa0839010:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | - | chr5_4:13622078-13622097 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | - | chr5_4:13620142-13620161 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | - | chr5_4:13620143-13620162 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | + | chr5_4:13620170-13620189 | Msa0839010:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | + | chr5_4:13621711-13621730 | Msa0839010:intron | 15.0% |
| !!! | TTTTTTTGTTGTTTTGTTTG+TGG | + | chr5_4:13619805-13619824 | Msa0839010:intron | 20.0% |
| !!! | TTTTTTGTTGTTTTGTTTGT+GGG | + | chr5_4:13619806-13619825 | Msa0839010:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | + | chr5_4:13620169-13620188 | Msa0839010:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | - | chr5_4:13620651-13620670 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | - | chr5_4:13620725-13620744 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | - | chr5_4:13620726-13620745 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | + | chr5_4:13620910-13620929 | Msa0839010:intron | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | + | chr5_4:13621293-13621312 | Msa0839010:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | - | chr5_4:13621698-13621717 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | + | chr5_4:13621853-13621872 | Msa0839010:CDS | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | + | chr5_4:13621895-13621914 | Msa0839010:CDS | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | - | chr5_4:13622238-13622257 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | + | chr5_4:13622263-13622282 | Msa0839010:intron | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | - | chr5_4:13622389-13622408 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | - | chr5_4:13622491-13622510 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTTTGTTTGTG+GGG | + | chr5_4:13619807-13619826 | Msa0839010:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | + | chr5_4:13620007-13620026 | Msa0839010:CDS | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | + | chr5_4:13620018-13620037 | Msa0839010:CDS | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | + | chr5_4:13620234-13620253 | Msa0839010:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | - | chr5_4:13620652-13620671 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | - | chr5_4:13620868-13620887 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | + | chr5_4:13621335-13621354 | Msa0839010:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | - | chr5_4:13621787-13621806 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | + | chr5_4:13621852-13621871 | Msa0839010:CDS | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | - | chr5_4:13621889-13621908 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | - | chr5_4:13622152-13622171 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | - | chr5_4:13622177-13622196 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | + | chr5_4:13622227-13622246 | Msa0839010:intron | 25.0% |
| ! | GTACAGAAAATATTTGTACA+AGG | - | chr5_4:13622306-13622325 | None:intergenic | 25.0% |
| ! | GTTGTCAATTAGTATATGTT+TGG | + | chr5_4:13622330-13622349 | Msa0839010:intron | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | + | chr5_4:13619520-13619539 | Msa0839010:five_prime_UTR | 30.0% | |
| GAAAATGAAGAAGAAGAAGT+TGG | - | chr5_4:13619621-13619640 | None:intergenic | 30.0% | |
| ! | CATTTTCATCTTCATCTTCA+TGG | + | chr5_4:13619634-13619653 | Msa0839010:exon | 30.0% |
| GATTTCAACAACCTAAGAAT+TGG | - | chr5_4:13619982-13620001 | None:intergenic | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | + | chr5_4:13620006-13620025 | Msa0839010:CDS | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | - | chr5_4:13620083-13620102 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | - | chr5_4:13620106-13620125 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | + | chr5_4:13620179-13620198 | Msa0839010:intron | 30.0% |
| TAGCCGCTATTTAAAAACAT+TGG | - | chr5_4:13620240-13620259 | None:intergenic | 30.0% | |
| ! | TTTTTAAATAGCGGCTATAG+CGG | + | chr5_4:13620243-13620262 | Msa0839010:intron | 30.0% |
| TTATACAAAACAGTGTATCG+TGG | - | chr5_4:13620316-13620335 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | + | chr5_4:13620340-13620359 | Msa0839010:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr5_4:13620503-13620522 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | - | chr5_4:13620936-13620955 | None:intergenic | 30.0% | |
| AGTATGTTGTAGAACAGTTA+GGG | - | chr5_4:13621141-13621160 | None:intergenic | 30.0% | |
| AAGTATGTTGTAGAACAGTT+AGG | - | chr5_4:13621142-13621161 | None:intergenic | 30.0% | |
| ! | ACTGTTCTACAACATACTTT+TGG | + | chr5_4:13621143-13621162 | Msa0839010:intron | 30.0% |
| TTTGGAGAAGTTAGAATTTG+AGG | + | chr5_4:13621161-13621180 | Msa0839010:intron | 30.0% | |
| TTGGAGAAGTTAGAATTTGA+GGG | + | chr5_4:13621162-13621181 | Msa0839010:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | - | chr5_4:13621331-13621350 | None:intergenic | 30.0% | |
| !! | ACAAATTTTGAAAGTTCAGC+AGG | + | chr5_4:13621583-13621602 | Msa0839010:CDS | 30.0% |
| GGAATAAAATGTTCAAAAGC+AGG | - | chr5_4:13621664-13621683 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | - | chr5_4:13621770-13621789 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | - | chr5_4:13621921-13621940 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | + | chr5_4:13621948-13621967 | Msa0839010:CDS | 30.0% | |
| TATAGGCTTCAGTGTATATT+TGG | - | chr5_4:13622474-13622493 | None:intergenic | 30.0% | |
| ! | ACTGAAGCCTATAAAGTATT+TGG | + | chr5_4:13622481-13622500 | Msa0839010:intron | 30.0% |
| TAAGGAGTTCACTTAAAGAT+CGG | - | chr5_4:13622560-13622579 | None:intergenic | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | + | chr5_4:13622665-13622684 | Msa0839010:CDS | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | + | chr5_4:13622682-13622701 | Msa0839010:CDS | 30.0% | |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | - | chr5_4:13619523-13619542 | None:intergenic | 35.0% |
| TTCAACAACACTATTCAACC+AGG | + | chr5_4:13619683-13619702 | Msa0839010:CDS | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | + | chr5_4:13619823-13619842 | Msa0839010:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | + | chr5_4:13619824-13619843 | Msa0839010:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | + | chr5_4:13619825-13619844 | Msa0839010:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | + | chr5_4:13619931-13619950 | Msa0839010:CDS | 35.0% |
| TGAAAGCTACTCCAATTCTT+AGG | + | chr5_4:13619968-13619987 | Msa0839010:CDS | 35.0% | |
| ! | AAGGGTATAAGAATGGAGTT+TGG | + | chr5_4:13620025-13620044 | Msa0839010:CDS | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | - | chr5_4:13620084-13620103 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | + | chr5_4:13620092-13620111 | Msa0839010:CDS | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | - | chr5_4:13620102-13620121 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | + | chr5_4:13620100-13620119 | Msa0839010:CDS | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | + | chr5_4:13620267-13620286 | Msa0839010:intron | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | + | chr5_4:13620282-13620301 | Msa0839010:intron | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | + | chr5_4:13620596-13620615 | Msa0839010:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | + | chr5_4:13620597-13620616 | Msa0839010:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | + | chr5_4:13620773-13620792 | Msa0839010:intron | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | + | chr5_4:13620917-13620936 | Msa0839010:intron | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | + | chr5_4:13620937-13620956 | Msa0839010:intron | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | - | chr5_4:13620959-13620978 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | + | chr5_4:13620959-13620978 | Msa0839010:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | + | chr5_4:13620975-13620994 | Msa0839010:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | - | chr5_4:13621051-13621070 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | - | chr5_4:13621069-13621088 | None:intergenic | 35.0% | |
| TTGTAGAACAGTTAGGGAAA+TGG | - | chr5_4:13621135-13621154 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | - | chr5_4:13621377-13621396 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | - | chr5_4:13621424-13621443 | None:intergenic | 35.0% |
| !!! | GCAAGACTTTTTTTAGTGGT+TGG | - | chr5_4:13621495-13621514 | None:intergenic | 35.0% |
| !!! | ACAGGCAAGACTTTTTTTAG+TGG | - | chr5_4:13621499-13621518 | None:intergenic | 35.0% |
| GAACAACGTGATAATTGACT+GGG | - | chr5_4:13621642-13621661 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | + | chr5_4:13621830-13621849 | Msa0839010:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | + | chr5_4:13621839-13621858 | Msa0839010:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | + | chr5_4:13621947-13621966 | Msa0839010:CDS | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | + | chr5_4:13621983-13622002 | Msa0839010:CDS | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | - | chr5_4:13622022-13622041 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | + | chr5_4:13622277-13622296 | Msa0839010:intron | 35.0% |
| AGAGTTTGATAAAACCACAG+TGG | + | chr5_4:13622361-13622380 | Msa0839010:intron | 35.0% | |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | + | chr5_4:13622413-13622432 | Msa0839010:intron | 35.0% |
| GCTTCAGTGTATATTTGGAT+TGG | - | chr5_4:13622469-13622488 | None:intergenic | 35.0% | |
| GATAAGAAGGCAAAAGATGT+TGG | + | chr5_4:13622653-13622672 | Msa0839010:CDS | 35.0% | |
| AACATCTTGTCTGAATCTCT+TGG | - | chr5_4:13622733-13622752 | None:intergenic | 35.0% | |
| !! | GACAAGATGTTTTCAAGAGA+AGG | + | chr5_4:13622742-13622761 | Msa0839010:CDS | 35.0% |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | - | chr5_4:13619607-13619626 | None:intergenic | 40.0% |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | + | chr5_4:13619826-13619845 | Msa0839010:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | + | chr5_4:13619827-13619846 | Msa0839010:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | - | chr5_4:13619897-13619916 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | + | chr5_4:13619897-13619916 | Msa0839010:CDS | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | - | chr5_4:13620642-13620661 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | + | chr5_4:13620698-13620717 | Msa0839010:intron | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | - | chr5_4:13620958-13620977 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | - | chr5_4:13620966-13620985 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | + | chr5_4:13620981-13621000 | Msa0839010:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | + | chr5_4:13621082-13621101 | Msa0839010:intron | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | + | chr5_4:13621167-13621186 | Msa0839010:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | - | chr5_4:13621323-13621342 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | + | chr5_4:13621351-13621370 | Msa0839010:intron | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | - | chr5_4:13621382-13621401 | None:intergenic | 40.0% | |
| TCTCCACGTGATATACAAGT+TGG | + | chr5_4:13621396-13621415 | Msa0839010:CDS | 40.0% | |
| GTTCCAACTTGTATATCACG+TGG | - | chr5_4:13621402-13621421 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | + | chr5_4:13621408-13621427 | Msa0839010:CDS | 40.0% |
| TTGAGATCCTGATTAAGCAC+AGG | - | chr5_4:13621517-13621536 | None:intergenic | 40.0% | |
| TCTTCCTTATGAAGAAGACG+AGG | + | chr5_4:13621540-13621559 | Msa0839010:CDS | 40.0% | |
| ! | GGAGCATTTGAATCTAAACC+CGG | - | chr5_4:13621621-13621640 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | - | chr5_4:13621643-13621662 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | - | chr5_4:13621685-13621704 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | - | chr5_4:13621882-13621901 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | - | chr5_4:13621938-13621957 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | + | chr5_4:13621966-13621985 | Msa0839010:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | + | chr5_4:13622045-13622064 | Msa0839010:CDS | 40.0% | |
| GAGTTCACTTAAAGATCGGT+AGG | - | chr5_4:13622556-13622575 | None:intergenic | 40.0% | |
| GCGATGTTGTCATGTGTATA+AGG | - | chr5_4:13622578-13622597 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | + | chr5_4:13622604-13622623 | Msa0839010:CDS | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | + | chr5_4:13622605-13622624 | Msa0839010:CDS | 40.0% | |
| GAGAAGAAGAGTAATGAGCG+AGG | - | chr5_4:13619663-13619682 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | - | chr5_4:13619704-13619723 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | + | chr5_4:13619886-13619905 | Msa0839010:CDS | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | - | chr5_4:13620623-13620642 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | + | chr5_4:13620622-13620641 | Msa0839010:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | - | chr5_4:13620782-13620801 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | - | chr5_4:13620783-13620802 | None:intergenic | 45.0% | |
| ! | TGCTGCAAATGTTGACTGCA+GGG | + | chr5_4:13621106-13621125 | Msa0839010:intron | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | + | chr5_4:13621178-13621197 | Msa0839010:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | - | chr5_4:13621364-13621383 | None:intergenic | 45.0% |
| TCACGTGGAGATCATTAAGC+AGG | - | chr5_4:13621387-13621406 | None:intergenic | 45.0% | |
| TCTGCAAGGGAAGAATTGGA+AGG | + | chr5_4:13621454-13621473 | Msa0839010:CDS | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | + | chr5_4:13621507-13621526 | Msa0839010:CDS | 45.0% | |
| TCAGCCTCGTCTTCTTCATA+AGG | - | chr5_4:13621547-13621566 | None:intergenic | 45.0% | |
| CAGCAGGTTTGAAAGTTCAC+CGG | + | chr5_4:13621599-13621618 | Msa0839010:intron | 45.0% | |
| AGCAGGTTTGAAAGTTCACC+GGG | + | chr5_4:13621600-13621619 | Msa0839010:intron | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | + | chr5_4:13621996-13622015 | Msa0839010:CDS | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | + | chr5_4:13622416-13622435 | Msa0839010:intron | 45.0% |
| TTGCCTTCTTATCACTGCCA+TGG | - | chr5_4:13622646-13622665 | None:intergenic | 45.0% | |
| CATAGAGAAGAGGCTCTTCA+TGG | + | chr5_4:13622692-13622711 | Msa0839010:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | - | chr5_4:13619725-13619744 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | - | chr5_4:13619726-13619745 | None:intergenic | 5.0% |
| !!! | AAATTTTGATTTTTTTTTAA+TGG | + | chr5_4:13619762-13619781 | Msa0839010:intron | 5.0% |
| !!! | AATTTTGATTTTTTTTTAAT+GGG | + | chr5_4:13619763-13619782 | Msa0839010:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | + | chr5_4:13619889-13619908 | Msa0839010:CDS | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | + | chr5_4:13620348-13620367 | Msa0839010:intron | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | - | chr5_4:13620613-13620632 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | + | chr5_4:13620611-13620630 | Msa0839010:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | - | chr5_4:13620637-13620656 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | + | chr5_4:13620677-13620696 | Msa0839010:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | + | chr5_4:13621105-13621124 | Msa0839010:intron | 50.0% |
| GGGCATGGTTCAACAATGGA+TGG | + | chr5_4:13621182-13621201 | Msa0839010:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | + | chr5_4:13621440-13621459 | Msa0839010:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | + | chr5_4:13621441-13621460 | Msa0839010:CDS | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | + | chr5_4:13621450-13621469 | Msa0839010:CDS | 50.0% | |
| AGAAGACGAGGCTGAGTTAC+TGG | + | chr5_4:13621552-13621571 | Msa0839010:CDS | 50.0% | |
| !! | ACAAAATCACGGTGCCACTG+TGG | - | chr5_4:13622378-13622397 | None:intergenic | 50.0% |
| ACACATGACAACATCGCTGC+AGG | + | chr5_4:13622581-13622600 | Msa0839010:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | + | chr5_4:13622599-13622618 | Msa0839010:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | + | chr5_4:13622608-13622627 | Msa0839010:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | + | chr5_4:13622626-13622645 | Msa0839010:CDS | 50.0% | |
| CAGCCATGGCAGTGATAAGA+AGG | + | chr5_4:13622640-13622659 | Msa0839010:CDS | 50.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | - | chr5_4:13621089-13621108 | None:intergenic | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | - | chr5_4:13621448-13621467 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | + | chr5_4:13622005-13622024 | Msa0839010:CDS | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | - | chr5_4:13622013-13622032 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | - | chr5_4:13622427-13622446 | None:intergenic | 55.0% |
| CGTTGAGACTGCCCGAATCA+CGG | - | chr5_4:13622446-13622465 | None:intergenic | 55.0% | |
| GACAACATCGCTGCAGGAAG+AGG | + | chr5_4:13622587-13622606 | Msa0839010:intron | 55.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | + | chr5_4:13620361-13620380 | Msa0839010:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | + | chr5_4:13622431-13622450 | Msa0839010:intron | 60.0% | |
| ACGGTGGCTCACCGTGATTC+GGG | + | chr5_4:13622432-13622451 | Msa0839010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 13619495 | 13622827 | 13619495 | ID=Msa0839010;Name=Msa0839010 |
| chr5_4 | mRNA | 13619495 | 13622827 | 13619495 | ID=Msa0839010-mRNA-1;Parent=Msa0839010;Name=Msa0839010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|1|0.8|1|1|1|5|0|330 |
| chr5_4 | exon | 13619495 | 13619704 | 13619495 | ID=Msa0839010-mRNA-1:exon:6074;Parent=Msa0839010-mRNA-1 |
| chr5_4 | exon | 13619869 | 13620121 | 13619869 | ID=Msa0839010-mRNA-1:exon:6075;Parent=Msa0839010-mRNA-1 |
| chr5_4 | exon | 13621357 | 13621604 | 13621357 | ID=Msa0839010-mRNA-1:exon:6076;Parent=Msa0839010-mRNA-1 |
| chr5_4 | exon | 13621852 | 13622066 | 13621852 | ID=Msa0839010-mRNA-1:exon:6077;Parent=Msa0839010-mRNA-1 |
| chr5_4 | exon | 13622603 | 13622827 | 13622603 | ID=Msa0839010-mRNA-1:exon:6078;Parent=Msa0839010-mRNA-1 |
| chr5_4 | five_prime_UTR | 13619495 | 13619652 | 13619495 | ID=Msa0839010-mRNA-1:five_prime_utr;Parent=Msa0839010-mRNA-1 |
| chr5_4 | CDS | 13619653 | 13619704 | 13619653 | ID=Msa0839010-mRNA-1:cds;Parent=Msa0839010-mRNA-1 |
| chr5_4 | CDS | 13619869 | 13620121 | 13619869 | ID=Msa0839010-mRNA-1:cds;Parent=Msa0839010-mRNA-1 |
| chr5_4 | CDS | 13621357 | 13621604 | 13621357 | ID=Msa0839010-mRNA-1:cds;Parent=Msa0839010-mRNA-1 |
| chr5_4 | CDS | 13621852 | 13622066 | 13621852 | ID=Msa0839010-mRNA-1:cds;Parent=Msa0839010-mRNA-1 |
| chr5_4 | CDS | 13622603 | 13622827 | 13622603 | ID=Msa0839010-mRNA-1:cds;Parent=Msa0839010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
