AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185430 MtrunA17_Chr6g0461701 97.115 312 9 0 1 312 1 312 0.0 625
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185430 AT5G17570.1 69.256 309 90 1 2 310 1 304 4.34e-160 449
Msa0185430 AT5G17570.2 69.256 309 90 1 2 310 1 304 6.19e-160 449
Msa0185430 AT3G03500.1 57.282 309 92 2 2 310 1 269 1.31e-123 355
Msa0185430 AT3G03500.3 63.452 197 72 0 2 198 1 197 1.91e-93 276
Msa0185430 AT3G03500.2 54.733 243 70 2 68 310 33 235 6.74e-86 258

Find 65 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATAAAAGAGTGTATT+TGG 0.175230 1_4:-75642383 Msa0185430:five_prime_UTR
GGTGTCTTGTTTATGATTCT+TGG 0.213076 1_4:+75642024 None:intergenic
CATAAGGATAAATGGGAATT+TGG 0.230756 1_4:-75642170 Msa0185430:five_prime_UTR
CTTCCTTTGGTCTCCATCCC+TGG 0.297899 1_4:-75641885 Msa0185430:intron
CCTTCTGTTCTTCCTTCCTT+TGG 0.311848 1_4:-75641898 Msa0185430:CDS
TCTCTTGACAATGTGCTTCA+TGG 0.320207 1_4:-75636379 Msa0185430:CDS
CTTCAACGTCTTCAACCAAT+TGG 0.340661 1_4:+75640050 None:intergenic
GGAAAATATCGTGAAATATA+CGG 0.342182 1_4:-75642362 Msa0185430:five_prime_UTR
GTGTCTTGTTTATGATTCTT+GGG 0.345527 1_4:+75642025 None:intergenic
CTATTTAGGTCTCTTCTGAT+AGG 0.353528 1_4:-75636480 Msa0185430:intron
AAAATCAATCTTCTTTCCTT+GGG 0.372466 1_4:+75639726 None:intergenic
GTCTTACACTTTGCTGTTAA+CGG 0.380768 1_4:-75641970 Msa0185430:CDS
GTACATTGTGTTCGTGCTTA+CGG 0.389384 1_4:-75639053 Msa0185430:CDS
TATGTCACTAAAAGCTAATA+AGG 0.393389 1_4:-75636611 Msa0185430:CDS
AGAATAAGCGAACTGCATTC+TGG 0.394096 1_4:+75635353 None:intergenic
TTCAACGTCTTCAACCAATT+GGG 0.398461 1_4:+75640051 None:intergenic
TTCAACAATTCATAAACTTA+CGG 0.415064 1_4:+75642085 None:intergenic
GTTGTCCTTCATTCTTACCT+AGG 0.416524 1_4:-75636697 Msa0185430:CDS
CAATAGAATATGCAAGGTCT+AGG 0.420681 1_4:-75642262 Msa0185430:intron
ACGGAGTTTCTGAACAAGAT+TGG 0.436828 1_4:-75641951 Msa0185430:CDS
CTCTTCTGATAGGATGTTGT+TGG 0.443450 1_4:-75636470 Msa0185430:CDS
TTCGACTTTGGTAGAGCATC+GGG 0.447737 1_4:+75636436 None:intergenic
GTTCGCTTATTCTCCTATGA+AGG 0.470681 1_4:-75635343 Msa0185430:CDS
AGAGAATCTATGTTCGACTT+TGG 0.477960 1_4:+75636424 None:intergenic
TTGCAGAGAGGAGCCCCAAT+TGG 0.482756 1_4:-75640065 Msa0185430:CDS
TTCTAAATGTTCCAGGTCTG+TGG 0.486469 1_4:-75636737 Msa0185430:intron
TATGCTAGAGATTACAAAAG+AGG 0.500520 1_4:-75635395 Msa0185430:CDS
GTTCGACTTTGGTAGAGCAT+CGG 0.504071 1_4:+75636435 None:intergenic
TTACCTAGGTTCAGCAGAGA+TGG 0.514272 1_4:-75636683 Msa0185430:CDS
CAAGGTCTAGGGTTCGAATC+CGG 0.516147 1_4:-75642250 Msa0185430:five_prime_UTR
GTAACATCGAAGCATCAGTT+AGG 0.519550 1_4:+75636299 None:intergenic
CCAAAGGAAGGAAGAACAGA+AGG 0.519584 1_4:+75641898 None:intergenic
TCGAAGCATCAGTTAGGACT+TGG 0.529353 1_4:+75636305 None:intergenic
CGTTATGAATGTTAGCCGGA+TGG 0.532725 1_4:+75636260 None:intergenic
AGGACTTGGGACGAATTAGC+GGG 0.533334 1_4:+75636319 None:intergenic
AGGACAACACCAGCAGGAAA+AGG 0.538586 1_4:+75636712 None:intergenic
CGAACACAATGTACAGATGC+TGG 0.542316 1_4:+75639062 None:intergenic
GAAGGATACACTCAACCATC+CGG 0.550149 1_4:-75636275 Msa0185430:CDS
GGCGAAGAAAATGCTGAAGA+TGG 0.551302 1_4:-75636590 Msa0185430:intron
TCAACGTCTTCAACCAATTG+GGG 0.551486 1_4:+75640052 None:intergenic
CAATTGGTTGAAGACGTTGA+AGG 0.554473 1_4:-75640049 Msa0185430:CDS
TAGGACTTGGGACGAATTAG+CGG 0.558442 1_4:+75636318 None:intergenic
TACCTCTCCAACTGCAGCAG+AGG 0.560264 1_4:+75640008 None:intergenic
GAATGAAGGACAACACCAGC+AGG 0.563907 1_4:+75636706 None:intergenic
CTATGCAGGTTGAAGTATTG+AGG 0.565024 1_4:-75639118 Msa0185430:intron
TTCCAGATTGGATTGGACAA+AGG 0.577268 1_4:-75639751 Msa0185430:intron
TCTAAATGTTCCAGGTCTGT+GGG 0.580026 1_4:-75636736 Msa0185430:intron
ACCCTCTGCTGCAGTTGGAG+AGG 0.580522 1_4:-75640010 Msa0185430:intron
TCTACACCCTCTGCTGCAGT+TGG 0.582522 1_4:-75640015 Msa0185430:CDS
GGGAGAAGAATCAGAAGTTG+AGG 0.586811 1_4:+75636339 None:intergenic
ACCTCTCCAACTGCAGCAGA+GGG 0.588835 1_4:+75640009 None:intergenic
AATAGAATATGCAAGGTCTA+GGG 0.593303 1_4:-75642261 Msa0185430:intron
GCACCAAGCTTTGAAAACTC+AGG 0.593705 1_4:+75636658 None:intergenic
CTTACGTTATGAATGTTAGC+CGG 0.594181 1_4:+75636256 None:intergenic
GGATGGTTGAGTGTATCCTT+CGG 0.594205 1_4:+75636277 None:intergenic
CAAAGGAAGGAAGAACAGAA+GGG 0.605180 1_4:+75641899 None:intergenic
CTGAACCTAGGTAAGAATGA+AGG 0.608083 1_4:+75636692 None:intergenic
CAGGGATGGAGACCAAAGGA+AGG 0.612129 1_4:+75641886 None:intergenic
TGACATAAGAAACCCAGAGA+AGG 0.613303 1_4:+75636627 None:intergenic
GAACCATCTCTGCTGAACCT+AGG 0.613905 1_4:+75636680 None:intergenic
CGAAGCATCAGTTAGGACTT+GGG 0.625448 1_4:+75636306 None:intergenic
GGATTGGACAAAGGATCCCA+AGG 0.626617 1_4:-75639742 Msa0185430:CDS
ATTAAAACAGCACAAGACAC+TGG 0.635495 1_4:-75641994 Msa0185430:CDS
GAACCAGGGATGGAGACCAA+AGG 0.644789 1_4:+75641882 None:intergenic
TGATGCTTCGATGTTACCGA+AGG 0.660025 1_4:-75636293 Msa0185430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATATTTTTTTAGGTAA+AGG - chr1_4:75635263-75635282 Msa0185430:three_prime_UTR 10.0%
!!! ATAATATTTTTTTAGGTAAA+GGG - chr1_4:75635264-75635283 Msa0185430:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGTACATA+AGG - chr1_4:75635413-75635432 Msa0185430:CDS 10.0%
!! TGTATATATAAATTATACTT+GGG + chr1_4:75636450-75636469 None:intergenic 10.0%
!! ATGTATATATAAATTATACT+TGG + chr1_4:75636451-75636470 None:intergenic 10.0%
!! TGATAAATTATAAATGAAAT+TGG - chr1_4:75637725-75637744 Msa0185430:intron 10.0%
!!! TTAAATTCTTATTGTTATTA+TGG - chr1_4:75640791-75640810 Msa0185430:intron 10.0%
!! GTAAAAGTAAATTTAAAAAA+TGG + chr1_4:75642018-75642037 None:intergenic 10.0%
!!! TAATATTTTTTTAGGTAAAG+GGG - chr1_4:75635265-75635284 Msa0185430:three_prime_UTR 15.0%
!!! TTCCATTTTCTATATTTTTT+TGG - chr1_4:75635781-75635800 Msa0185430:intron 15.0%
!!! TCCATTTTCTATATTTTTTT+GGG - chr1_4:75635782-75635801 Msa0185430:intron 15.0%
!! TGTAACATAAAAAAAATATG+GGG + chr1_4:75636091-75636110 None:intergenic 15.0%
!! GTGTAACATAAAAAAAATAT+GGG + chr1_4:75636092-75636111 None:intergenic 15.0%
!! TGTGTAACATAAAAAAAATA+TGG + chr1_4:75636093-75636112 None:intergenic 15.0%
!!! CTAAACAATTTTTTTTTTAC+AGG + chr1_4:75636239-75636258 None:intergenic 15.0%
!!! GAATATTTTATTTTAGGTTT+TGG + chr1_4:75638936-75638955 None:intergenic 15.0%
!!! GATTTGGAATATTTTATTTT+AGG + chr1_4:75638942-75638961 None:intergenic 15.0%
!!! ATTAAGTTGTTTATTCAAAT+AGG - chr1_4:75639836-75639855 Msa0185430:intron 15.0%
!!! TTAAGTTGTTTATTCAAATA+GGG - chr1_4:75639837-75639856 Msa0185430:intron 15.0%
!! TCTTATATTCTATTCTATTT+AGG - chr1_4:75641105-75641124 Msa0185430:intron 15.0%
!!! GAAAATGCAATTTTTTTTTT+TGG + chr1_4:75641628-75641647 None:intergenic 15.0%
!! TAAATTTAAAAAATGGGAAA+CGG + chr1_4:75642011-75642030 None:intergenic 15.0%
!! TTCAAAAATAAACAAATTAC+AGG - chr1_4:75642290-75642309 Msa0185430:intron 15.0%
!!! AACAAATAAAAGAGTGTATT+TGG - chr1_4:75635216-75635235 Msa0185430:three_prime_UTR 20.0%
!!! CGGTGTTATAATATTTTTTT+AGG - chr1_4:75635257-75635276 Msa0185430:three_prime_UTR 20.0%
!!! AATATTTTTTTAGGTAAAGG+GGG - chr1_4:75635266-75635285 Msa0185430:three_prime_UTR 20.0%
!!! TTAGATTTTAACCTTTTTTG+TGG + chr1_4:75635378-75635397 None:intergenic 20.0%
!!! TTTTTGTACATAAGGATAAA+TGG - chr1_4:75635421-75635440 Msa0185430:intron 20.0%
!!! TTTTGTACATAAGGATAAAT+GGG - chr1_4:75635422-75635441 Msa0185430:intron 20.0%
!! TTCAACAATTCATAAACTTA+CGG + chr1_4:75635517-75635536 None:intergenic 20.0%
!! GGAATTAAATTAAGCAAAAA+AGG + chr1_4:75635765-75635784 None:intergenic 20.0%
!! TCCCAAAAAAATATAGAAAA+TGG + chr1_4:75635786-75635805 None:intergenic 20.0%
!! TTGTAATGTTTCGTTAATAT+TGG - chr1_4:75635879-75635898 Msa0185430:intron 20.0%
!!! AGTATAATTTGTTGTATCAT+TGG - chr1_4:75636623-75636642 Msa0185430:CDS 20.0%
!!! CAATTCATTGTTATTATAGT+TGG + chr1_4:75636709-75636728 None:intergenic 20.0%
!!! GTTTGCAATTTTAATACATT+CGG + chr1_4:75636881-75636900 None:intergenic 20.0%
!! ATAACATAATCAATATGTGA+AGG - chr1_4:75638194-75638213 Msa0185430:intron 20.0%
!! ATTATAACACTCTTCAATAT+CGG + chr1_4:75638288-75638307 None:intergenic 20.0%
!!! ATAGATATAATTTTGCAGTT+TGG + chr1_4:75638776-75638795 None:intergenic 20.0%
!! AACTTGGAAATTCTTAATTT+AGG + chr1_4:75639071-75639090 None:intergenic 20.0%
!! AGAAAAGAAAAAAGCTATAT+TGG + chr1_4:75639376-75639395 None:intergenic 20.0%
!! ACAAAAACTAAAGACTTATT+TGG - chr1_4:75639618-75639637 Msa0185430:intron 20.0%
!! ACAGTATAAGATATAAATGA+GGG + chr1_4:75640494-75640513 None:intergenic 20.0%
!!! GAACATTTAGAATTGTTTTA+AGG + chr1_4:75640854-75640873 None:intergenic 20.0%
!!! AATGCAATTTTTTTTTTTGG+TGG + chr1_4:75641625-75641644 None:intergenic 20.0%
!!! CATCTTAAATTGCAATTTTA+GGG - chr1_4:75641856-75641875 Msa0185430:intron 20.0%
! GGAAAATATCGTGAAATATA+CGG - chr1_4:75635237-75635256 Msa0185430:three_prime_UTR 25.0%
! TAATAATTTCTCTTCTCACT+TGG - chr1_4:75635292-75635311 Msa0185430:three_prime_UTR 25.0%
! AATATGCAATAGAATATGCA+AGG - chr1_4:75635331-75635350 Msa0185430:CDS 25.0%
! AACGAAACATTACAATATGA+GGG + chr1_4:75635874-75635893 None:intergenic 25.0%
! TAACGAAACATTACAATATG+AGG + chr1_4:75635875-75635894 None:intergenic 25.0%
!! ACTGATTGTAGAAGTATAAA+GGG - chr1_4:75636158-75636177 Msa0185430:intron 25.0%
! CAAAGAATCTTCAAATTACA+GGG + chr1_4:75636269-75636288 None:intergenic 25.0%
! AAATTCGCTCAAATTACATA+GGG - chr1_4:75636347-75636366 Msa0185430:CDS 25.0%
! ACAAATTATACTTCTACGAT+CGG + chr1_4:75636615-75636634 None:intergenic 25.0%
! ACTTATTTCATATGTTGGAT+TGG + chr1_4:75636684-75636703 None:intergenic 25.0%
! TGGATACTTATTTCATATGT+TGG + chr1_4:75636689-75636708 None:intergenic 25.0%
! ATTCACTAAAGAGATATTTG+AGG - chr1_4:75636981-75637000 Msa0185430:intron 25.0%
! AGAACTTAAGTTCAATTCTT+AGG - chr1_4:75637058-75637077 Msa0185430:intron 25.0%
! ACATTAAGATACTATATCGA+TGG - chr1_4:75637198-75637217 Msa0185430:intron 25.0%
!!! GCTAACTAGTATTTTAAGAT+CGG + chr1_4:75637236-75637255 None:intergenic 25.0%
! AAATTCGACAAATTTCTGAA+TGG + chr1_4:75637301-75637320 None:intergenic 25.0%
! TTGATATTGTAAACACTGAA+AGG - chr1_4:75637397-75637416 Msa0185430:intron 25.0%
! TGATATTGTAAACACTGAAA+GGG - chr1_4:75637398-75637417 Msa0185430:intron 25.0%
! AAAATCAATCTTCTTTCCTT+GGG + chr1_4:75637876-75637895 None:intergenic 25.0%
! AAAAATCAATCTTCTTTCCT+TGG + chr1_4:75637877-75637896 None:intergenic 25.0%
! ATGTTTATAGAGAAACCTAA+CGG - chr1_4:75638125-75638144 Msa0185430:intron 25.0%
! TGTTATCTGTTATAACAGAT+TGG + chr1_4:75638180-75638199 None:intergenic 25.0%
! AAGAATGTTAGCTGAATTAT+TGG - chr1_4:75638432-75638451 Msa0185430:intron 25.0%
! ATTGAATTGAACGACAAAAA+GGG + chr1_4:75639184-75639203 None:intergenic 25.0%
! TCTATTCTACTTCTATACAA+AGG - chr1_4:75639485-75639504 Msa0185430:intron 25.0%
!! CTATACAAAGGATTTAAGAT+AGG - chr1_4:75639497-75639516 Msa0185430:intron 25.0%
!!! TCTTTAGTTTTTGTTAAGAG+AGG + chr1_4:75639612-75639631 None:intergenic 25.0%
!! GTTGTTATTATAAGCTATCA+TGG + chr1_4:75639759-75639778 None:intergenic 25.0%
!!! TTCCTTTTTGTTTTCTGTAT+TGG + chr1_4:75640018-75640037 None:intergenic 25.0%
! TACAGAAAACAAAAAGGAAA+AGG - chr1_4:75640019-75640038 Msa0185430:CDS 25.0%
! CAAAAAGGAAAAGGATTATT+TGG - chr1_4:75640028-75640047 Msa0185430:CDS 25.0%
!! TAAGACTTTGTTTGAGAATT+AGG + chr1_4:75640372-75640391 None:intergenic 25.0%
! AAATTATTGTGTATGTTGGA+TGG + chr1_4:75640463-75640482 None:intergenic 25.0%
! CACAGTATAAGATATAAATG+AGG + chr1_4:75640495-75640514 None:intergenic 25.0%
! AAAACAATTCTAAATGTTCC+AGG - chr1_4:75640855-75640874 Msa0185430:intron 25.0%
! TATGTCACTAAAAGCTAATA+AGG - chr1_4:75640988-75641007 Msa0185430:intron 25.0%
!!! AAGAGATGCTTATTTTGAAA+GGG + chr1_4:75641401-75641420 None:intergenic 25.0%
!!! TAAGAGATGCTTATTTTGAA+AGG + chr1_4:75641402-75641421 None:intergenic 25.0%
! TCTTGATATAGTTTCATGTA+TGG - chr1_4:75641705-75641724 Msa0185430:intron 25.0%
!! AGCATTACATTTTCATACTT+CGG + chr1_4:75641812-75641831 None:intergenic 25.0%
! CCTAAAATTGCAATTTAAGA+TGG + chr1_4:75641858-75641877 None:intergenic 25.0%
!! CCATCTTAAATTGCAATTTT+AGG - chr1_4:75641855-75641874 Msa0185430:intron 25.0%
! TCCATGTCATTATATTCATT+CGG + chr1_4:75642083-75642102 None:intergenic 25.0%
!!! CAGAATGATGTTTTAAAGAT+CGG + chr1_4:75642129-75642148 None:intergenic 25.0%
!! CTTGATTTCATTTTACATAC+AGG - chr1_4:75642162-75642181 Msa0185430:five_prime_UTR 25.0%
!!! AAGTAATTTTGATCCTTCAT+AGG + chr1_4:75642272-75642291 None:intergenic 25.0%
AATAGAATATGCAAGGTCTA+GGG - chr1_4:75635338-75635357 Msa0185430:CDS 30.0%
!! GATTTTAACCTTTTTTGTGG+TGG + chr1_4:75635375-75635394 None:intergenic 30.0%
CATAAGGATAAATGGGAATT+TGG - chr1_4:75635429-75635448 Msa0185430:intron 30.0%
! TACGGCTTCAATTTTTGTTA+TGG + chr1_4:75635499-75635518 None:intergenic 30.0%
!! GTGTCTTGTTTATGATTCTT+GGG + chr1_4:75635577-75635596 None:intergenic 30.0%
AAGGTGTGAATGAATGAAAA+AGG + chr1_4:75635746-75635765 None:intergenic 30.0%
TTTCAAAATAGTCACTTCGT+TGG - chr1_4:75635838-75635857 Msa0185430:intron 30.0%
!!! TCAGCGACTATTTTGAAATT+TGG - chr1_4:75636014-75636033 Msa0185430:intron 30.0%
TGACTACTCATCACATATTT+AGG - chr1_4:75636048-75636067 Msa0185430:intron 30.0%
GACTACTCATCACATATTTA+GGG - chr1_4:75636049-75636068 Msa0185430:intron 30.0%
CTTTATACTTCTACAATCAG+TGG + chr1_4:75636159-75636178 None:intergenic 30.0%
! CACTGATTGTAGAAGTATAA+AGG - chr1_4:75636157-75636176 Msa0185430:intron 30.0%
TGTTTACCCTGTAATATTAG+CGG - chr1_4:75636189-75636208 Msa0185430:intron 30.0%
TAGAAACCGCTAATATTACA+GGG + chr1_4:75636408-75636427 None:intergenic 30.0%
ATAGAAACCGCTAATATTAC+AGG + chr1_4:75636199-75636218 None:intergenic 30.0%
CCAAAGAATCTTCAAATTAC+AGG + chr1_4:75636270-75636289 None:intergenic 30.0%
CCTGTAATTTGAAGATTCTT+TGG - chr1_4:75636267-75636286 Msa0185430:CDS 30.0%
! ATTTGAAGATTCTTTGGTTC+TGG - chr1_4:75636273-75636292 Msa0185430:CDS 30.0%
TGTACTGTCAAAATTCATGA+AGG + chr1_4:75636300-75636319 None:intergenic 30.0%
! GACAGTACATAGTTTGTATA+TGG - chr1_4:75636311-75636330 Msa0185430:CDS 30.0%
! AGTACATAGTTTGTATATGG+CGG - chr1_4:75636314-75636333 Msa0185430:CDS 30.0%
GAAATTCGCTCAAATTACAT+AGG - chr1_4:75636346-75636365 Msa0185430:CDS 30.0%
TAGAAACCGCTAATATTACA+TGG - chr1_4:75636408-75636427 Msa0185430:CDS 30.0%
AGAAACCGCTAATATTACAT+GGG - chr1_4:75636409-75636428 Msa0185430:CDS 30.0%
TTTACCCCATGTAATATTAG+CGG + chr1_4:75636417-75636436 None:intergenic 30.0%
! ACACAATGTGTTTGGATTTT+CGG + chr1_4:75636661-75636680 None:intergenic 30.0%
! CTCACAATTTGCAAGTTTTA+TGG + chr1_4:75636735-75636754 None:intergenic 30.0%
!! ATACTTGTTTTCCCATTACT+GGG + chr1_4:75636821-75636840 None:intergenic 30.0%
!! CTCTTTGGTTTGTAGTTATA+GGG - chr1_4:75636917-75636936 Msa0185430:intron 30.0%
GCTTAACACAGTTCAATAAA+TGG + chr1_4:75637258-75637277 None:intergenic 30.0%
!! GTAAACACATGTGTTGATTT+CGG - chr1_4:75637428-75637447 Msa0185430:intron 30.0%
!! ATAGCTGGTCTATAATTTTC+AGG - chr1_4:75637507-75637526 Msa0185430:intron 30.0%
AGAATATGTCATAGTTCATG+TGG - chr1_4:75637656-75637675 Msa0185430:intron 30.0%
! GTTTTTCTTTTCTTCCAGAT+TGG - chr1_4:75637836-75637855 Msa0185430:intron 30.0%
!!! GACGATTTTGAAACTCTAAA+CGG - chr1_4:75637955-75637974 Msa0185430:intron 30.0%
AAACTAATGTGAGTTAGCTA+AGG - chr1_4:75638098-75638117 Msa0185430:intron 30.0%
ATACTTAACTGCAATTCAGT+TGG - chr1_4:75638148-75638167 Msa0185430:intron 30.0%
! TATGTGAAGGTTTTTCTGAA+AGG - chr1_4:75638207-75638226 Msa0185430:intron 30.0%
TGATGTATGTACTACTTTAG+AGG + chr1_4:75638361-75638380 None:intergenic 30.0%
CATGTATCAATGACAAAAGA+CGG - chr1_4:75638396-75638415 Msa0185430:intron 30.0%
ATGTTAGCTGAATTATTGGT+TGG - chr1_4:75638436-75638455 Msa0185430:intron 30.0%
TGTCAAATTGAGTTTCATGT+TGG - chr1_4:75638698-75638717 Msa0185430:intron 30.0%
! GATATAATTTTGCAGTTTGG+CGG + chr1_4:75638773-75638792 None:intergenic 30.0%
ATATTCCAAATCTAGAGATC+TGG - chr1_4:75638950-75638969 Msa0185430:intron 30.0%
! ATTTTCCAGATCTCTAGATT+TGG + chr1_4:75638958-75638977 None:intergenic 30.0%
GACTAACTGACTAATAATAG+AGG + chr1_4:75639107-75639126 None:intergenic 30.0%
GATTGAATTGAACGACAAAA+AGG + chr1_4:75639185-75639204 None:intergenic 30.0%
TTATTGCATCACTTTACCAA+AGG + chr1_4:75639217-75639236 None:intergenic 30.0%
GTTCTGCAATATTAAGTCAA+AGG - chr1_4:75639327-75639346 Msa0185430:intron 30.0%
! TACAAAGGATTTAAGATAGG+CGG - chr1_4:75639500-75639519 Msa0185430:intron 30.0%
! ATCATTTTCATCCATCTTGA+GGG + chr1_4:75639558-75639577 None:intergenic 30.0%
! TATCATTTTCATCCATCTTG+AGG + chr1_4:75639559-75639578 None:intergenic 30.0%
! GTTTTTGTTAAGAGAGGAAA+TGG + chr1_4:75639606-75639625 None:intergenic 30.0%
!!! AATCATCGGTGCATTTTTTT+AGG + chr1_4:75639863-75639882 None:intergenic 30.0%
! AAAATGCACCGATGATTAAA+AGG - chr1_4:75639866-75639885 Msa0185430:intron 30.0%
! GAACTGATCCTTTTAATCAT+CGG + chr1_4:75639877-75639896 None:intergenic 30.0%
CACCAATACAGAAAACAAAA+AGG - chr1_4:75640013-75640032 Msa0185430:CDS 30.0%
! GTGTTGAATCTCTTGATTTT+CGG + chr1_4:75640063-75640082 None:intergenic 30.0%
AGATTATTTGGAGGGAAATT+AGG + chr1_4:75640298-75640317 None:intergenic 30.0%
GTCTTACAGAAACTACATTA+AGG - chr1_4:75640386-75640405 Msa0185430:intron 30.0%
GAGGAAATTATTGTGTATGT+TGG + chr1_4:75640467-75640486 None:intergenic 30.0%
! GAAGCTTAGGATTTAAAACT+CGG + chr1_4:75640563-75640582 None:intergenic 30.0%
ATAACGCATAGACTTCTAAA+TGG + chr1_4:75640634-75640653 None:intergenic 30.0%
CGAGTTATATGTCTACATTA+TGG + chr1_4:75640668-75640687 None:intergenic 30.0%
CTCGTAACTGTAATGTAATA+AGG - chr1_4:75640684-75640703 Msa0185430:intron 30.0%
CTGTAATGTAATAAGGAAGA+AGG - chr1_4:75640691-75640710 Msa0185430:intron 30.0%
! GATTCTCTTTTCTTTGTTGA+AGG - chr1_4:75641190-75641209 Msa0185430:intron 30.0%
CATCTCTTATATCATCAACT+TGG - chr1_4:75641413-75641432 Msa0185430:intron 30.0%
! GGGAAAAAAAAATGGTTTTC+TGG - chr1_4:75641493-75641512 Msa0185430:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr1_4:75641577-75641596 Msa0185430:intron 30.0%
!!! GCAATTTTTTTTTTTGGTGG+CGG + chr1_4:75641622-75641641 None:intergenic 30.0%
!!! TAGGTTTTGAAAGCTTCAAA+GGG + chr1_4:75641652-75641671 None:intergenic 30.0%
GATATAGTTTCATGTATGGA+AGG - chr1_4:75641709-75641728 Msa0185430:intron 30.0%
! TTTGAAACAAATTCACCAGT+AGG - chr1_4:75641735-75641754 Msa0185430:intron 30.0%
ATGAGAACAACTTTCCTTAT+GGG + chr1_4:75641769-75641788 None:intergenic 30.0%
! GCATTACATTTTCATACTTC+GGG + chr1_4:75641811-75641830 None:intergenic 30.0%
!! AATTGCAATTTTAGGGATGA+AGG - chr1_4:75641863-75641882 Msa0185430:intron 30.0%
CCATGTCATTATATTCATTC+GGG + chr1_4:75642082-75642101 None:intergenic 30.0%
TATGCTAGAGATTACAAAAG+AGG - chr1_4:75642204-75642223 Msa0185430:five_prime_UTR 30.0%
CAATAGAATATGCAAGGTCT+AGG - chr1_4:75635337-75635356 Msa0185430:CDS 35.0%
!! GGTGTCTTGTTTATGATTCT+TGG + chr1_4:75635578-75635597 None:intergenic 35.0%
!!! TGTGCTGTTTTAATCAGTTG+TGG + chr1_4:75635599-75635618 None:intergenic 35.0%
ATTAAAACAGCACAAGACAC+TGG - chr1_4:75635605-75635624 Msa0185430:intron 35.0%
!! GTCTTACACTTTGCTGTTAA+CGG - chr1_4:75635629-75635648 Msa0185430:intron 35.0%
! GTTTTCTGTTAAGCAGTTGT+CGG - chr1_4:75635670-75635689 Msa0185430:intron 35.0%
AATGAAAAAGGAACGAACCA+GGG + chr1_4:75635734-75635753 None:intergenic 35.0%
ATAATTATTAATCCGTGCCC+AGG - chr1_4:75636129-75636148 Msa0185430:intron 35.0%
TAATTATTAATCCGTGCCCA+GGG - chr1_4:75636130-75636149 Msa0185430:intron 35.0%
GAATCTTCAAATTACAGGGT+TGG + chr1_4:75636265-75636284 None:intergenic 35.0%
GAAACCGCTAATATTACATG+GGG - chr1_4:75636410-75636429 Msa0185430:CDS 35.0%
TGAGTATTAATCTGTGCTCA+AGG - chr1_4:75636583-75636602 Msa0185430:intron 35.0%
AATTATACTTCTACGATCGG+TGG + chr1_4:75636612-75636631 None:intergenic 35.0%
!! GATACTTGTTTTCCCATTAC+TGG + chr1_4:75636822-75636841 None:intergenic 35.0%
CCTATAACTACAAACCAAAG+AGG + chr1_4:75636919-75636938 None:intergenic 35.0%
!! CCTCTTTGGTTTGTAGTTAT+AGG - chr1_4:75636916-75636935 Msa0185430:intron 35.0%
CTTCTGAACAATTTGTGCTT+TGG + chr1_4:75637040-75637059 None:intergenic 35.0%
! GCACTGACAAATTAGATTGA+CGG + chr1_4:75637476-75637495 None:intergenic 35.0%
TTCAACGTCTTCAACCAATT+GGG + chr1_4:75637551-75637570 None:intergenic 35.0%
! TCTTTTCTTCCAGATTGGAT+TGG - chr1_4:75637841-75637860 Msa0185430:intron 35.0%
!! GAAGATTGATTTTTCTCAGC+AGG - chr1_4:75637883-75637902 Msa0185430:intron 35.0%
CATTGTAAAGCCAAAGAATG+AGG + chr1_4:75637924-75637943 None:intergenic 35.0%
ATTGCAGTTAAGTATCCGTT+AGG + chr1_4:75638143-75638162 None:intergenic 35.0%
!! TGAAGGTTTTTCTGAAAGGA+TGG - chr1_4:75638211-75638230 Msa0185430:intron 35.0%
CTAACATTCTTCAGCAAGAA+AGG + chr1_4:75638423-75638442 None:intergenic 35.0%
TACTTGAGAATAATGATGCG+AGG - chr1_4:75638645-75638664 Msa0185430:intron 35.0%
AGTTTCATGTTGGAACAGAA+AGG - chr1_4:75638708-75638727 Msa0185430:intron 35.0%
GAATGTTCACATCCAAGAAA+TGG + chr1_4:75639150-75639169 None:intergenic 35.0%
TTCTTGGATGTGAACATTCT+TGG - chr1_4:75639151-75639170 Msa0185430:intron 35.0%
ACTATAAAGAGAGATGTCGA+TGG + chr1_4:75639399-75639418 None:intergenic 35.0%
AGTGTTTATTCTCTGTCCTA+AGG - chr1_4:75639453-75639472 Msa0185430:intron 35.0%
! TCATTTTCATCCATCTTGAG+GGG + chr1_4:75639557-75639576 None:intergenic 35.0%
CAAATAATCTCTCCCGAATA+CGG - chr1_4:75640308-75640327 Msa0185430:intron 35.0%
! CTTTGTTTGAGAATTAGGAG+AGG + chr1_4:75640367-75640386 None:intergenic 35.0%
! TTGTGTATGTTGGATGGTTT+TGG + chr1_4:75640457-75640476 None:intergenic 35.0%
AGATATAAATGAGGGTTTCG+AGG + chr1_4:75640486-75640505 None:intergenic 35.0%
TAAATCCTAAGCTTCCTTTC+AGG - chr1_4:75640568-75640587 Msa0185430:intron 35.0%
TTAGAAGTCTATGCGTTATG+TGG - chr1_4:75640635-75640654 Msa0185430:intron 35.0%
!! TAATAAGGAAGAAGGCATTC+TGG - chr1_4:75640699-75640718 Msa0185430:intron 35.0%
TTCAAACCTATAAACATCCC+TGG - chr1_4:75640737-75640756 Msa0185430:intron 35.0%
CAGAAAAATTGTAAGGTCCA+GGG + chr1_4:75640757-75640776 None:intergenic 35.0%
!! GTGCTTATTTTTCCTTCTCT+GGG - chr1_4:75640960-75640979 Msa0185430:intron 35.0%
CTATTTAGGTCTCTTCTGAT+AGG - chr1_4:75641119-75641138 Msa0185430:intron 35.0%
AGAGAATCTATGTTCGACTT+TGG + chr1_4:75641178-75641197 None:intergenic 35.0%
CTTACGTTATGAATGTTAGC+CGG + chr1_4:75641346-75641365 None:intergenic 35.0%
GCTAACATTCATAACGTAAG+TGG - chr1_4:75641346-75641365 Msa0185430:intron 35.0%
AAAGGGCAAAGTGACAATAA+AGG + chr1_4:75641384-75641403 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG - chr1_4:75641582-75641601 Msa0185430:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG - chr1_4:75641583-75641602 Msa0185430:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG - chr1_4:75641584-75641603 Msa0185430:intron 35.0%
!!! CTAGGTTTTGAAAGCTTCAA+AGG + chr1_4:75641653-75641672 None:intergenic 35.0%
TGAGAACAACTTTCCTTATG+GGG + chr1_4:75641768-75641787 None:intergenic 35.0%
CATGAGAACAACTTTCCTTA+TGG + chr1_4:75641770-75641789 None:intergenic 35.0%
AATGCTATCTTCAATGCATG+AGG - chr1_4:75641826-75641845 Msa0185430:intron 35.0%
ATGCTATCTTCAATGCATGA+GGG - chr1_4:75641827-75641846 Msa0185430:intron 35.0%
CCCGAATGAATATAATGACA+TGG - chr1_4:75642079-75642098 Msa0185430:exon 35.0%
!!! TTAACCTTTTTTGTGGTGGC+CGG + chr1_4:75635371-75635390 None:intergenic 40.0%
ACGGAGTTTCTGAACAAGAT+TGG - chr1_4:75635648-75635667 Msa0185430:intron 40.0%
CAAAGGAAGGAAGAACAGAA+GGG + chr1_4:75635703-75635722 None:intergenic 40.0%
GAATGAAAAAGGAACGAACC+AGG + chr1_4:75635735-75635754 None:intergenic 40.0%
! ACATAGTTTGTATATGGCGG+AGG - chr1_4:75636317-75636336 Msa0185430:CDS 40.0%
!! TTGAGTATTGATCTGTGCTC+AGG - chr1_4:75636484-75636503 Msa0185430:intron 40.0%
!! TGAGTATTGATCTGTGCTCA+GGG - chr1_4:75636485-75636504 Msa0185430:intron 40.0%
! TGGATTGGACACAATGTGTT+TGG + chr1_4:75636669-75636688 None:intergenic 40.0%
TCATCTTCAAGACCCAGTAA+TGG - chr1_4:75636806-75636825 Msa0185430:intron 40.0%
CATCTTCAAGACCCAGTAAT+GGG - chr1_4:75636807-75636826 Msa0185430:intron 40.0%
AGAATCCTTCCCATGAGATT+CGG - chr1_4:75637129-75637148 Msa0185430:intron 40.0%
GTGCTATGCAAGTTTATAGC+TGG - chr1_4:75637492-75637511 Msa0185430:intron 40.0%
!!! TTTTCAGGTATGTTGCAGAG+AGG - chr1_4:75637522-75637541 Msa0185430:intron 40.0%
TCAACGTCTTCAACCAATTG+GGG + chr1_4:75637550-75637569 None:intergenic 40.0%
CTTCAACGTCTTCAACCAAT+TGG + chr1_4:75637552-75637571 None:intergenic 40.0%
CAATTGGTTGAAGACGTTGA+AGG - chr1_4:75637550-75637569 Msa0185430:intron 40.0%
TATGTCATAGTTCATGTGGC+TGG - chr1_4:75637660-75637679 Msa0185430:intron 40.0%
! TTCCAGATTGGATTGGACAA+AGG - chr1_4:75637848-75637867 Msa0185430:intron 40.0%
ATCCTTTGTCCAATCCAATC+TGG + chr1_4:75637853-75637872 None:intergenic 40.0%
CGTGAGAAATTGCGAGAAAT+CGG - chr1_4:75638061-75638080 Msa0185430:intron 40.0%
CAATACTTCAACCTGCATAG+AGG + chr1_4:75638481-75638500 None:intergenic 40.0%
!! CTATGCAGGTTGAAGTATTG+AGG - chr1_4:75638481-75638500 Msa0185430:intron 40.0%
GTACATTGTGTTCGTGCTTA+CGG - chr1_4:75638546-75638565 Msa0185430:intron 40.0%
TTCATGTTGGAACAGAAAGG+AGG - chr1_4:75638711-75638730 Msa0185430:intron 40.0%
TCATGTTGGAACAGAAAGGA+GGG - chr1_4:75638712-75638731 Msa0185430:intron 40.0%
CTATGTGTTATCGAACACTG+AGG + chr1_4:75638911-75638930 None:intergenic 40.0%
GGAGACGGAAAATAACATGA+AGG + chr1_4:75639008-75639027 None:intergenic 40.0%
TGAGATGCCATGGAAAAGAA+TGG + chr1_4:75639029-75639048 None:intergenic 40.0%
! TGAAGATGTTTGAGATGCCA+TGG + chr1_4:75639039-75639058 None:intergenic 40.0%
AGGTGCACATGTAGATAACT+TGG + chr1_4:75639087-75639106 None:intergenic 40.0%
! GTTAGTCTATGCAAACTGAC+TGG - chr1_4:75639120-75639139 Msa0185430:intron 40.0%
CTGACTGGAATTCCATTTCT+TGG - chr1_4:75639135-75639154 Msa0185430:intron 40.0%
TTCAATCAAACCCGTTCCTT+TGG - chr1_4:75639198-75639217 Msa0185430:intron 40.0%
CATCACTTTACCAAAGGAAC+GGG + chr1_4:75639211-75639230 None:intergenic 40.0%
GCATCACTTTACCAAAGGAA+CGG + chr1_4:75639212-75639231 None:intergenic 40.0%
ACCATCGTATGTTCAAAGAG+CGG + chr1_4:75639250-75639269 None:intergenic 40.0%
ATGTGCAGCTGTCTCTTTAT+GGG - chr1_4:75639285-75639304 Msa0185430:intron 40.0%
GAATAGATTCAACGCACCTT+AGG + chr1_4:75639472-75639491 None:intergenic 40.0%
AGTCTCACAAGTGCTTATGT+TGG + chr1_4:75639667-75639686 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr1_4:75639670-75639689 Msa0185430:intron 40.0%
AAGCACTTGTGAGACTGTTT+GGG - chr1_4:75639671-75639690 Msa0185430:intron 40.0%
! AAGCTATCATGGAGAGCATA+GGG + chr1_4:75639748-75639767 None:intergenic 40.0%
! TAAGCTATCATGGAGAGCAT+AGG + chr1_4:75639749-75639768 None:intergenic 40.0%
!! AACACTGCGAGTTTTATCGA+TGG - chr1_4:75640078-75640097 Msa0185430:intron 40.0%
TTATCGATGGCAGCATAAGA+TGG - chr1_4:75640091-75640110 Msa0185430:intron 40.0%
ATGGAAACGTTGGATTTGTG+TGG - chr1_4:75640110-75640129 Msa0185430:intron 40.0%
TGGAAACGTTGGATTTGTGT+GGG - chr1_4:75640111-75640130 Msa0185430:intron 40.0%
AGTTGTGATTGCACCAAGTT+TGG - chr1_4:75640163-75640182 Msa0185430:intron 40.0%
GCGATTCTTGAATCCAAACT+TGG + chr1_4:75640179-75640198 None:intergenic 40.0%
GAAATTAGGAGAGGAATGCA+GGG + chr1_4:75640284-75640303 None:intergenic 40.0%
ATTTGGAGGGAAATTAGGAG+AGG + chr1_4:75640293-75640312 None:intergenic 40.0%
TTCGGGAGAGATTATTTGGA+GGG + chr1_4:75640306-75640325 None:intergenic 40.0%
ATTCGGGAGAGATTATTTGG+AGG + chr1_4:75640307-75640326 None:intergenic 40.0%
CGTATTCGGGAGAGATTATT+TGG + chr1_4:75640310-75640329 None:intergenic 40.0%
AGAATTAGGAGAGGAATGCA+GGG + chr1_4:75640358-75640377 None:intergenic 40.0%
TTGTAGAAGTTGCTCAACTC+TGG + chr1_4:75640420-75640439 None:intergenic 40.0%
TCTAACCTGAAAGGAAGCTT+AGG + chr1_4:75640576-75640595 None:intergenic 40.0%
ACTCGAAAGTCTAACCTGAA+AGG + chr1_4:75640585-75640604 None:intergenic 40.0%
TAAGGTCCAGGGATGTTTAT+AGG + chr1_4:75640746-75640765 None:intergenic 40.0%
GCAGAAAAATTGTAAGGTCC+AGG + chr1_4:75640758-75640777 None:intergenic 40.0%
ATGGGCGCAGAAAAATTGTA+AGG + chr1_4:75640764-75640783 None:intergenic 40.0%
TTCTAAATGTTCCAGGTCTG+TGG - chr1_4:75640862-75640881 Msa0185430:intron 40.0%
TCTAAATGTTCCAGGTCTGT+GGG - chr1_4:75640863-75640882 Msa0185430:intron 40.0%
GTTGTCCTTCATTCTTACCT+AGG - chr1_4:75640902-75640921 Msa0185430:intron 40.0%
CTGAACCTAGGTAAGAATGA+AGG + chr1_4:75640910-75640929 None:intergenic 40.0%
! GTTCCTGAGTTTTCAAAGCT+TGG - chr1_4:75640938-75640957 Msa0185430:intron 40.0%
!! GGTGCTTATTTTTCCTTCTC+TGG - chr1_4:75640959-75640978 Msa0185430:intron 40.0%
TGACATAAGAAACCCAGAGA+AGG + chr1_4:75640975-75640994 None:intergenic 40.0%
CTCTTCTGATAGGATGTTGT+TGG - chr1_4:75641129-75641148 Msa0185430:intron 40.0%
TCTCTTGACAATGTGCTTCA+TGG - chr1_4:75641220-75641239 Msa0185430:intron 40.0%
! GTAACATCGAAGCATCAGTT+AGG + chr1_4:75641303-75641322 None:intergenic 40.0%
! TTAGTTTGAGCTTGCTCTCT+GGG - chr1_4:75641472-75641491 Msa0185430:intron 40.0%
! GCTCTCTGGGGAAAAAAAAA+TGG - chr1_4:75641485-75641504 Msa0185430:intron 40.0%
!!! TTTTTTTTTTTGGTGGCGGC+CGG + chr1_4:75641618-75641637 None:intergenic 40.0%
TTATGGGGAAAGAAACCTAC+TGG + chr1_4:75641753-75641772 None:intergenic 40.0%
AGTAGGTTTCTTTCCCCATA+AGG - chr1_4:75641752-75641771 Msa0185430:intron 40.0%
!! GCAATTTTAGGGATGAAGGA+TGG - chr1_4:75641867-75641886 Msa0185430:intron 40.0%
TAATGACATGGAAGTCTCAC+TGG - chr1_4:75642091-75642110 Msa0185430:five_prime_UTR 40.0%
!! AAGTCTCACTGGTTTGGTAT+CGG - chr1_4:75642102-75642121 Msa0185430:five_prime_UTR 40.0%
AGAATAAGCGAACTGCATTC+TGG + chr1_4:75642249-75642268 None:intergenic 40.0%
GTTCGCTTATTCTCCTATGA+AGG - chr1_4:75642256-75642275 Msa0185430:intron 40.0%
CCAAAGGAAGGAAGAACAGA+AGG + chr1_4:75635704-75635723 None:intergenic 45.0%
CCTTCTGTTCTTCCTTCCTT+TGG - chr1_4:75635701-75635720 Msa0185430:intron 45.0%
AAAAAGGAACGAACCAGGGA+TGG + chr1_4:75635730-75635749 None:intergenic 45.0%
! AGCGGTTTCTATGTCGTTTC+TGG - chr1_4:75636207-75636226 Msa0185430:intron 45.0%
TGTCTTAGTACGTGCCTCTT+TGG - chr1_4:75636902-75636921 Msa0185430:intron 45.0%
GAATCTCATGGGAAGGATTC+TGG + chr1_4:75637130-75637149 None:intergenic 45.0%
GAATCCTTCCCATGAGATTC+GGG - chr1_4:75637130-75637149 Msa0185430:intron 45.0%
TTAACCCTCCCGAATCTCAT+GGG + chr1_4:75637141-75637160 None:intergenic 45.0%
GCTAACAGCTCCTCATTCTT+TGG - chr1_4:75637911-75637930 Msa0185430:intron 45.0%
TTAAGACATCGCCTCTATGC+AGG - chr1_4:75638467-75638486 Msa0185430:intron 45.0%
CGAACACAATGTACAGATGC+TGG + chr1_4:75638540-75638559 None:intergenic 45.0%
CATGTTGGAACAGAAAGGAG+GGG - chr1_4:75638713-75638732 Msa0185430:intron 45.0%
! TTGCAGTTTGGCGGATCTTA+TGG + chr1_4:75638764-75638783 None:intergenic 45.0%
! TCCGTCTCCATTCTTTTCCA+TGG - chr1_4:75639019-75639038 Msa0185430:intron 45.0%
GCCATGGAAAAGAATGGAGA+CGG + chr1_4:75639023-75639042 None:intergenic 45.0%
ACCGCTCTTTGAACATACGA+TGG - chr1_4:75639246-75639265 Msa0185430:intron 45.0%
AGACAGCTGCACATCATAAG+AGG + chr1_4:75639279-75639298 None:intergenic 45.0%
GATGTGCAGCTGTCTCTTTA+TGG - chr1_4:75639284-75639303 Msa0185430:intron 45.0%
TCAAAGGAGTGAGATGCACA+AGG - chr1_4:75639343-75639362 Msa0185430:intron 45.0%
GCAGCATAAGATGGAAACGT+TGG - chr1_4:75640100-75640119 Msa0185430:intron 45.0%
AAACGTTGGATTTGTGTGGG+TGG - chr1_4:75640114-75640133 Msa0185430:intron 45.0%
! TGCAATCACAACTTGCTTCG+GGG + chr1_4:75640156-75640175 None:intergenic 45.0%
! GTGCAATCACAACTTGCTTC+GGG + chr1_4:75640157-75640176 None:intergenic 45.0%
! GGTGCAATCACAACTTGCTT+CGG + chr1_4:75640158-75640177 None:intergenic 45.0%
GGAAATTAGGAGAGGAATGC+AGG + chr1_4:75640285-75640304 None:intergenic 45.0%
GGAGATCACAAACCGTATTC+GGG + chr1_4:75640323-75640342 None:intergenic 45.0%
GGGAGATCACAAACCGTATT+CGG + chr1_4:75640324-75640343 None:intergenic 45.0%
GAGAATTAGGAGAGGAATGC+AGG + chr1_4:75640359-75640378 None:intergenic 45.0%
TTACCTAGGTTCAGCAGAGA+TGG - chr1_4:75640916-75640935 Msa0185430:intron 45.0%
!! GCACCAAGCTTTGAAAACTC+AGG + chr1_4:75640944-75640963 None:intergenic 45.0%
GGCGAAGAAAATGCTGAAGA+TGG - chr1_4:75641009-75641028 Msa0185430:intron 45.0%
! TTCGACTTTGGTAGAGCATC+GGG + chr1_4:75641166-75641185 None:intergenic 45.0%
GTTCGACTTTGGTAGAGCAT+CGG + chr1_4:75641167-75641186 None:intergenic 45.0%
GGGAGAAGAATCAGAAGTTG+AGG + chr1_4:75641263-75641282 None:intergenic 45.0%
TAGGACTTGGGACGAATTAG+CGG + chr1_4:75641284-75641303 None:intergenic 45.0%
! CGAAGCATCAGTTAGGACTT+GGG + chr1_4:75641296-75641315 None:intergenic 45.0%
! TCGAAGCATCAGTTAGGACT+TGG + chr1_4:75641297-75641316 None:intergenic 45.0%
TGATGCTTCGATGTTACCGA+AGG - chr1_4:75641306-75641325 Msa0185430:intron 45.0%
GGATGGTTGAGTGTATCCTT+CGG + chr1_4:75641325-75641344 None:intergenic 45.0%
GAAGGATACACTCAACCATC+CGG - chr1_4:75641324-75641343 Msa0185430:intron 45.0%
CGTTATGAATGTTAGCCGGA+TGG + chr1_4:75641342-75641361 None:intergenic 45.0%
CAGAGAGCAAGCTCAAACTA+AGG + chr1_4:75641473-75641492 None:intergenic 45.0%
! CTTAGTTTGAGCTTGCTCTC+TGG - chr1_4:75641471-75641490 Msa0185430:intron 45.0%
! TAGTTTGAGCTTGCTCTCTG+GGG - chr1_4:75641473-75641492 Msa0185430:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_4:75641555-75641574 Msa0185430:intron 45.0%
!!! TTTTTTTTTTGGTGGCGGCC+GGG + chr1_4:75641617-75641636 None:intergenic 45.0%
ACTAGAAGCAGCTGAGAACT+AGG + chr1_4:75641671-75641690 None:intergenic 45.0%
AAACCAACCAGCAAACTAGC+CGG + chr1_4:75641960-75641979 None:intergenic 45.0%
TTAGCCAGACTGCAATACGA+CGG + chr1_4:75641988-75642007 None:intergenic 45.0%
! ACATGGAAGTCTCACTGGTT+TGG - chr1_4:75642096-75642115 Msa0185430:five_prime_UTR 45.0%
!! AATAATTATATTATATTAGA+CGG + chr1_4:75636118-75636137 None:intergenic 5.0%
!!! TTAAATAATTTTTTTTACAA+AGG - chr1_4:75636380-75636399 Msa0185430:CDS 5.0%
!!! ATTTTAAAATTTGAAAATAA+TGG - chr1_4:75638238-75638257 Msa0185430:intron 5.0%
!! TAAGAATTTAAAAAATATAT+GGG + chr1_4:75640782-75640801 None:intergenic 5.0%
!! ATAAGAATTTAAAAAATATA+TGG + chr1_4:75640783-75640802 None:intergenic 5.0%
!! TAAAAGTAAATTTAAAAAAT+GGG + chr1_4:75642017-75642036 None:intergenic 5.0%
! CAAGGTCTAGGGTTCGAATC+CGG - chr1_4:75635349-75635368 Msa0185430:CDS 50.0%
GAATCCGGCCACCACAAAAA+AGG - chr1_4:75635364-75635383 Msa0185430:CDS 50.0%
! TCGCTGATTGTGCACTCTGT+TGG + chr1_4:75636001-75636020 None:intergenic 50.0%
CTACAATCAGTGGTGACCCT+GGG + chr1_4:75636149-75636168 None:intergenic 50.0%
TCTACAATCAGTGGTGACCC+TGG + chr1_4:75636150-75636169 None:intergenic 50.0%
ACCAAGCGATGAAGTTCGAG+TGG - chr1_4:75637007-75637026 Msa0185430:intron 50.0%
ACCACTCGAACTTCATCGCT+TGG + chr1_4:75637011-75637030 None:intergenic 50.0%
GTTAACCCTCCCGAATCTCA+TGG + chr1_4:75637142-75637161 None:intergenic 50.0%
GTGTTGCGTATGTGCGTCAT+AGG + chr1_4:75637371-75637390 None:intergenic 50.0%
GGATTGGACAAAGGATCCCA+AGG - chr1_4:75637857-75637876 Msa0185430:intron 50.0%
TTGGAACAGAAAGGAGGGGA+GGG - chr1_4:75638717-75638736 Msa0185430:intron 50.0%
! TTGGCGGATCTTATGGTTCG+TGG + chr1_4:75638757-75638776 None:intergenic 50.0%
TCCATCACTACCCCTCAAGA+TGG - chr1_4:75639544-75639563 Msa0185430:intron 50.0%
TCCATCTTGAGGGGTAGTGA+TGG + chr1_4:75639548-75639567 None:intergenic 50.0%
AGAGGAATGCAGGGAGGAAA+AGG + chr1_4:75640275-75640294 None:intergenic 50.0%
ATTAGGAGAGGAATGCAGGG+AGG + chr1_4:75640281-75640300 None:intergenic 50.0%
AATGCAGGGAGGGAAAGGAA+GGG + chr1_4:75640344-75640363 None:intergenic 50.0%
TTAGGAGAGGAATGCAGGGA+GGG + chr1_4:75640280-75640299 None:intergenic 50.0%
ATTAGGAGAGGAATGCAGGG+AGG + chr1_4:75640281-75640300 None:intergenic 50.0%
AGGACAACACCAGCAGGAAA+AGG + chr1_4:75640890-75640909 None:intergenic 50.0%
GAATGAAGGACAACACCAGC+AGG + chr1_4:75640896-75640915 None:intergenic 50.0%
GAACCATCTCTGCTGAACCT+AGG + chr1_4:75640922-75640941 None:intergenic 50.0%
AGGACTTGGGACGAATTAGC+GGG + chr1_4:75641283-75641302 None:intergenic 50.0%
CAACTGAGCTAAGCTCACGA+GGG + chr1_4:75641552-75641571 None:intergenic 50.0%
!!! TTTTTTTTTGGTGGCGGCCG+GGG + chr1_4:75641616-75641635 None:intergenic 50.0%
! CAACGAGTTGAACCGAGAAC+CGG - chr1_4:75641938-75641957 Msa0185430:CDS 50.0%
TAGCCAGACTGCAATACGAC+GGG + chr1_4:75641987-75642006 None:intergenic 50.0%
CAGGGATGGAGACCAAAGGA+AGG + chr1_4:75635716-75635735 None:intergenic 55.0%
CTTCCTTTGGTCTCCATCCC+TGG - chr1_4:75635714-75635733 Msa0185430:intron 55.0%
GAACCAGGGATGGAGACCAA+AGG + chr1_4:75635720-75635739 None:intergenic 55.0%
TGTGCTCAGGGTCATCACTC+TGG - chr1_4:75636497-75636516 Msa0185430:intron 55.0%
TTCTGGCAGTACAGTCGAGG+AGG + chr1_4:75637113-75637132 None:intergenic 55.0%
GGATTCTGGCAGTACAGTCG+AGG + chr1_4:75637116-75637135 None:intergenic 55.0%
TCCTTCCCATGAGATTCGGG+AGG - chr1_4:75637133-75637152 Msa0185430:intron 55.0%
CCTTCCCATGAGATTCGGGA+GGG - chr1_4:75637134-75637153 Msa0185430:intron 55.0%
TTGCAGAGAGGAGCCCCAAT+TGG - chr1_4:75637534-75637553 Msa0185430:intron 55.0%
TCTACACCCTCTGCTGCAGT+TGG - chr1_4:75637584-75637603 Msa0185430:intron 55.0%
ACCTCTCCAACTGCAGCAGA+GGG + chr1_4:75637593-75637612 None:intergenic 55.0%
TACCTCTCCAACTGCAGCAG+AGG + chr1_4:75637594-75637613 None:intergenic 55.0%
GTTGGAACAGAAAGGAGGGG+AGG - chr1_4:75638716-75638735 Msa0185430:intron 55.0%
! TGGAGAGCATAGGGAGAAGC+TGG + chr1_4:75639739-75639758 None:intergenic 55.0%
GAATGCAGGGAGGGAAAGGA+AGG + chr1_4:75640345-75640364 None:intergenic 55.0%
AGAGGAATGCAGGGAGGGAA+AGG + chr1_4:75640349-75640368 None:intergenic 55.0%
AGGAAAAGGTCCCACAGACC+TGG + chr1_4:75640876-75640895 None:intergenic 55.0%
! TCTGTGGGACCTTTTCCTGC+TGG - chr1_4:75640878-75640897 Msa0185430:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_4:75641553-75641572 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_4:75641550-75641569 Msa0185430:intron 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG - chr1_4:75641596-75641615 Msa0185430:intron 55.0%
! CCAGCAAACTAGCCGGTTCT+CGG + chr1_4:75641953-75641972 None:intergenic 55.0%
!! GAACCGGCTAGTTTGCTGGT+TGG - chr1_4:75641954-75641973 Msa0185430:CDS 55.0%
AGCCAGACTGCAATACGACG+GGG + chr1_4:75641986-75642005 None:intergenic 55.0%
ATCAGTGGTGACCCTGGGCA+CGG + chr1_4:75636144-75636163 None:intergenic 60.0%
CCCTCCCGAATCTCATGGGA+AGG + chr1_4:75637137-75637156 None:intergenic 60.0%
ACCCTCTGCTGCAGTTGGAG+AGG - chr1_4:75637589-75637608 Msa0185430:intron 60.0%
! AGAAAGGAGGGGAGGGTGTG+TGG - chr1_4:75638724-75638743 Msa0185430:intron 60.0%
! GAAAGGAGGGGAGGGTGTGT+GGG - chr1_4:75638725-75638744 Msa0185430:intron 60.0%
!! CCGAGAACCGGCTAGTTTGC+TGG - chr1_4:75641950-75641969 Msa0185430:CDS 60.0%
ACCCCCGTCGTATTGCAGTC+TGG - chr1_4:75641981-75642000 Msa0185430:CDS 60.0%
GCCAGACTGCAATACGACGG+GGG + chr1_4:75641985-75642004 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 75635208 75642413 75635208 ID=Msa0185430;Name=Msa0185430
chr1_4 mRNA 75635208 75642413 75635208 ID=Msa0185430-mRNA-1;Parent=Msa0185430;Name=Msa0185430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=241|1|1|1|0.85|0.75|8|113|312
chr1_4 exon 75635208 75635437 75635208 ID=Msa0185430-mRNA-1:exon:25811;Parent=Msa0185430-mRNA-1
chr1_4 exon 75636261 75636494 75636261 ID=Msa0185430-mRNA-1:exon:25810;Parent=Msa0185430-mRNA-1
chr1_4 exon 75636591 75636744 75636591 ID=Msa0185430-mRNA-1:exon:25809;Parent=Msa0185430-mRNA-1
chr1_4 exon 75639032 75639132 75639032 ID=Msa0185430-mRNA-1:exon:25808;Parent=Msa0185430-mRNA-1
chr1_4 exon 75639717 75639767 75639717 ID=Msa0185430-mRNA-1:exon:25807;Parent=Msa0185430-mRNA-1
chr1_4 exon 75640011 75640092 75640011 ID=Msa0185430-mRNA-1:exon:25806;Parent=Msa0185430-mRNA-1
chr1_4 exon 75641886 75642273 75641886 ID=Msa0185430-mRNA-1:exon:25805;Parent=Msa0185430-mRNA-1
chr1_4 exon 75642361 75642413 75642361 ID=Msa0185430-mRNA-1:exon:25804;Parent=Msa0185430-mRNA-1
chr1_4 five_prime_UTR 75642361 75642413 75642361 ID=Msa0185430-mRNA-1:five_prime_utr;Parent=Msa0185430-mRNA-1
chr1_4 five_prime_UTR 75642086 75642273 75642086 ID=Msa0185430-mRNA-1:five_prime_utr;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75641886 75642085 75641886 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75640011 75640092 75640011 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75639717 75639767 75639717 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75639032 75639132 75639032 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75636591 75636744 75636591 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75636261 75636494 75636261 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 CDS 75635321 75635437 75635321 ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1
chr1_4 three_prime_UTR 75635208 75635320 75635208 ID=Msa0185430-mRNA-1:three_prime_utr;Parent=Msa0185430-mRNA-1
Gene Sequence

>Msa0185430

ATGATGAAACTGTTTGATGCACACTGTCATCTACAAGACCCAAGAATCATAAACAAGACACCACAACTGATTAAAACAGCACAAGACACTGGTGTCTTACACTTTGCTGTTAACGGAGTTTCTGAACAAGATTGGTTTTCTGTTAAGCAGTTGTCGGTTACTTACCCTTCTGTTCTTCCTTCCTTTGGTCTCCATCCCTGGTATGTTGCAGAGAGGAGCCCCAATTGGTTGAAGACGTTGAAGGAGTATTTTGACTCTACACCCTCTGCTGCAGTTGGAGAGATTGGATTGGACAAAGGATCCCAAGGAAAGAAGATTGATTTTTCTCAGCAGGTTGAAGTATTGAGGCAGCAGCTTGAACTTGCTAAAGAGTTAAACAAGCCAGCATCTGTACATTGTGTTCGTGCTTACGGCGATCTTCTTGAGTTAATGAAGTCTGTGGGACCTTTTCCTGCTGGTGTTGTCCTTCATTCTTACCTAGGTTCAGCAGAGATGGTTCCTGAGTTTTCAAAGCTTGGTGCTTATTTTTCCTTCTCTGGGTTTCTTATGTCACTAAAAGCTAATAAGGCGAAGAAAATGCTGAAGATGGTCTCTTCTGATAGGATGTTGTTGGAGACAGATGCACCCGATGCTCTACCAAAGTCGAACATAGATTCTCTTTTCTTTGTTGAAGGAGATACTTCTCTTGACAATGTGCTTCATGGACAAAGAACAACTTCATCCTCAACTTCTGATTCTTCTCCCGCTAATTCGTCCCAAGTCCTAACTGATGCTTCGATGTTACCGAAGGATACACTCAACCATCCGGCTAACATTCATAACGTACTTGATTATGTTGCATCTATGCTAGAGATTACAAAAGAGGAACTAGCTGAATTAAGTTACCAGAATGCAGTTCGCTTATTCTCCTATGAAGGATCAAAATTACTTCAAAAATAA

Protein sequence

>Msa0185430

MMKLFDAHCHLQDPRIINKTPQLIKTAQDTGVLHFAVNGVSEQDWFSVKQLSVTYPSVLPSFGLHPWYVAERSPNWLKTLKEYFDSTPSAAVGEIGLDKGSQGKKIDFSQQVEVLRQQLELAKELNKPASVHCVRAYGDLLELMKSVGPFPAGVVLHSYLGSAEMVPEFSKLGAYFSFSGFLMSLKANKAKKMLKMVSSDRMLLETDAPDALPKSNIDSLFFVEGDTSLDNVLHGQRTTSSSTSDSSPANSSQVLTDASMLPKDTLNHPANIHNVLDYVASMLEITKEELAELSYQNAVRLFSYEGSKLLQK*