Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0185430 | sp|P37545|YABD_BACSU | 27.090 | 299 | 170 | 3 | 4 | 302 | 2 | 252 | 8.76e-27 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0185430 | A0A072UIG3 | 97.115 | 312 | 9 | 0 | 1 | 312 | 1 | 312 | 0.0 | 625 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0185430 | Msa0408830 | 0.836119 | 1.127563e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0185430 | MtrunA17_Chr6g0461701 | 97.115 | 312 | 9 | 0 | 1 | 312 | 1 | 312 | 0.0 | 625 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0185430 | AT5G17570.1 | 69.256 | 309 | 90 | 1 | 2 | 310 | 1 | 304 | 4.34e-160 | 449 |
Msa0185430 | AT5G17570.2 | 69.256 | 309 | 90 | 1 | 2 | 310 | 1 | 304 | 6.19e-160 | 449 |
Msa0185430 | AT3G03500.1 | 57.282 | 309 | 92 | 2 | 2 | 310 | 1 | 269 | 1.31e-123 | 355 |
Msa0185430 | AT3G03500.3 | 63.452 | 197 | 72 | 0 | 2 | 198 | 1 | 197 | 1.91e-93 | 276 |
Msa0185430 | AT3G03500.2 | 54.733 | 243 | 70 | 2 | 68 | 310 | 33 | 235 | 6.74e-86 | 258 |
Find 65 sgRNAs with CRISPR-Local
Find 423 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAAATAAAAGAGTGTATT+TGG | 0.175230 | 1_4:-75642383 | Msa0185430:five_prime_UTR |
GGTGTCTTGTTTATGATTCT+TGG | 0.213076 | 1_4:+75642024 | None:intergenic |
CATAAGGATAAATGGGAATT+TGG | 0.230756 | 1_4:-75642170 | Msa0185430:five_prime_UTR |
CTTCCTTTGGTCTCCATCCC+TGG | 0.297899 | 1_4:-75641885 | Msa0185430:intron |
CCTTCTGTTCTTCCTTCCTT+TGG | 0.311848 | 1_4:-75641898 | Msa0185430:CDS |
TCTCTTGACAATGTGCTTCA+TGG | 0.320207 | 1_4:-75636379 | Msa0185430:CDS |
CTTCAACGTCTTCAACCAAT+TGG | 0.340661 | 1_4:+75640050 | None:intergenic |
GGAAAATATCGTGAAATATA+CGG | 0.342182 | 1_4:-75642362 | Msa0185430:five_prime_UTR |
GTGTCTTGTTTATGATTCTT+GGG | 0.345527 | 1_4:+75642025 | None:intergenic |
CTATTTAGGTCTCTTCTGAT+AGG | 0.353528 | 1_4:-75636480 | Msa0185430:intron |
AAAATCAATCTTCTTTCCTT+GGG | 0.372466 | 1_4:+75639726 | None:intergenic |
GTCTTACACTTTGCTGTTAA+CGG | 0.380768 | 1_4:-75641970 | Msa0185430:CDS |
GTACATTGTGTTCGTGCTTA+CGG | 0.389384 | 1_4:-75639053 | Msa0185430:CDS |
TATGTCACTAAAAGCTAATA+AGG | 0.393389 | 1_4:-75636611 | Msa0185430:CDS |
AGAATAAGCGAACTGCATTC+TGG | 0.394096 | 1_4:+75635353 | None:intergenic |
TTCAACGTCTTCAACCAATT+GGG | 0.398461 | 1_4:+75640051 | None:intergenic |
TTCAACAATTCATAAACTTA+CGG | 0.415064 | 1_4:+75642085 | None:intergenic |
GTTGTCCTTCATTCTTACCT+AGG | 0.416524 | 1_4:-75636697 | Msa0185430:CDS |
CAATAGAATATGCAAGGTCT+AGG | 0.420681 | 1_4:-75642262 | Msa0185430:intron |
ACGGAGTTTCTGAACAAGAT+TGG | 0.436828 | 1_4:-75641951 | Msa0185430:CDS |
CTCTTCTGATAGGATGTTGT+TGG | 0.443450 | 1_4:-75636470 | Msa0185430:CDS |
TTCGACTTTGGTAGAGCATC+GGG | 0.447737 | 1_4:+75636436 | None:intergenic |
GTTCGCTTATTCTCCTATGA+AGG | 0.470681 | 1_4:-75635343 | Msa0185430:CDS |
AGAGAATCTATGTTCGACTT+TGG | 0.477960 | 1_4:+75636424 | None:intergenic |
TTGCAGAGAGGAGCCCCAAT+TGG | 0.482756 | 1_4:-75640065 | Msa0185430:CDS |
TTCTAAATGTTCCAGGTCTG+TGG | 0.486469 | 1_4:-75636737 | Msa0185430:intron |
TATGCTAGAGATTACAAAAG+AGG | 0.500520 | 1_4:-75635395 | Msa0185430:CDS |
GTTCGACTTTGGTAGAGCAT+CGG | 0.504071 | 1_4:+75636435 | None:intergenic |
TTACCTAGGTTCAGCAGAGA+TGG | 0.514272 | 1_4:-75636683 | Msa0185430:CDS |
CAAGGTCTAGGGTTCGAATC+CGG | 0.516147 | 1_4:-75642250 | Msa0185430:five_prime_UTR |
GTAACATCGAAGCATCAGTT+AGG | 0.519550 | 1_4:+75636299 | None:intergenic |
CCAAAGGAAGGAAGAACAGA+AGG | 0.519584 | 1_4:+75641898 | None:intergenic |
TCGAAGCATCAGTTAGGACT+TGG | 0.529353 | 1_4:+75636305 | None:intergenic |
CGTTATGAATGTTAGCCGGA+TGG | 0.532725 | 1_4:+75636260 | None:intergenic |
AGGACTTGGGACGAATTAGC+GGG | 0.533334 | 1_4:+75636319 | None:intergenic |
AGGACAACACCAGCAGGAAA+AGG | 0.538586 | 1_4:+75636712 | None:intergenic |
CGAACACAATGTACAGATGC+TGG | 0.542316 | 1_4:+75639062 | None:intergenic |
GAAGGATACACTCAACCATC+CGG | 0.550149 | 1_4:-75636275 | Msa0185430:CDS |
GGCGAAGAAAATGCTGAAGA+TGG | 0.551302 | 1_4:-75636590 | Msa0185430:intron |
TCAACGTCTTCAACCAATTG+GGG | 0.551486 | 1_4:+75640052 | None:intergenic |
CAATTGGTTGAAGACGTTGA+AGG | 0.554473 | 1_4:-75640049 | Msa0185430:CDS |
TAGGACTTGGGACGAATTAG+CGG | 0.558442 | 1_4:+75636318 | None:intergenic |
TACCTCTCCAACTGCAGCAG+AGG | 0.560264 | 1_4:+75640008 | None:intergenic |
GAATGAAGGACAACACCAGC+AGG | 0.563907 | 1_4:+75636706 | None:intergenic |
CTATGCAGGTTGAAGTATTG+AGG | 0.565024 | 1_4:-75639118 | Msa0185430:intron |
TTCCAGATTGGATTGGACAA+AGG | 0.577268 | 1_4:-75639751 | Msa0185430:intron |
TCTAAATGTTCCAGGTCTGT+GGG | 0.580026 | 1_4:-75636736 | Msa0185430:intron |
ACCCTCTGCTGCAGTTGGAG+AGG | 0.580522 | 1_4:-75640010 | Msa0185430:intron |
TCTACACCCTCTGCTGCAGT+TGG | 0.582522 | 1_4:-75640015 | Msa0185430:CDS |
GGGAGAAGAATCAGAAGTTG+AGG | 0.586811 | 1_4:+75636339 | None:intergenic |
ACCTCTCCAACTGCAGCAGA+GGG | 0.588835 | 1_4:+75640009 | None:intergenic |
AATAGAATATGCAAGGTCTA+GGG | 0.593303 | 1_4:-75642261 | Msa0185430:intron |
GCACCAAGCTTTGAAAACTC+AGG | 0.593705 | 1_4:+75636658 | None:intergenic |
CTTACGTTATGAATGTTAGC+CGG | 0.594181 | 1_4:+75636256 | None:intergenic |
GGATGGTTGAGTGTATCCTT+CGG | 0.594205 | 1_4:+75636277 | None:intergenic |
CAAAGGAAGGAAGAACAGAA+GGG | 0.605180 | 1_4:+75641899 | None:intergenic |
CTGAACCTAGGTAAGAATGA+AGG | 0.608083 | 1_4:+75636692 | None:intergenic |
CAGGGATGGAGACCAAAGGA+AGG | 0.612129 | 1_4:+75641886 | None:intergenic |
TGACATAAGAAACCCAGAGA+AGG | 0.613303 | 1_4:+75636627 | None:intergenic |
GAACCATCTCTGCTGAACCT+AGG | 0.613905 | 1_4:+75636680 | None:intergenic |
CGAAGCATCAGTTAGGACTT+GGG | 0.625448 | 1_4:+75636306 | None:intergenic |
GGATTGGACAAAGGATCCCA+AGG | 0.626617 | 1_4:-75639742 | Msa0185430:CDS |
ATTAAAACAGCACAAGACAC+TGG | 0.635495 | 1_4:-75641994 | Msa0185430:CDS |
GAACCAGGGATGGAGACCAA+AGG | 0.644789 | 1_4:+75641882 | None:intergenic |
TGATGCTTCGATGTTACCGA+AGG | 0.660025 | 1_4:-75636293 | Msa0185430:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATAATATTTTTTTAGGTAA+AGG | - | chr1_4:75635263-75635282 | Msa0185430:three_prime_UTR | 10.0% |
!!! | ATAATATTTTTTTAGGTAAA+GGG | - | chr1_4:75635264-75635283 | Msa0185430:three_prime_UTR | 10.0% |
!!! | TTTTTTTTTTTTTGTACATA+AGG | - | chr1_4:75635413-75635432 | Msa0185430:CDS | 10.0% |
!! | TGTATATATAAATTATACTT+GGG | + | chr1_4:75636450-75636469 | None:intergenic | 10.0% |
!! | ATGTATATATAAATTATACT+TGG | + | chr1_4:75636451-75636470 | None:intergenic | 10.0% |
!! | TGATAAATTATAAATGAAAT+TGG | - | chr1_4:75637725-75637744 | Msa0185430:intron | 10.0% |
!!! | TTAAATTCTTATTGTTATTA+TGG | - | chr1_4:75640791-75640810 | Msa0185430:intron | 10.0% |
!! | GTAAAAGTAAATTTAAAAAA+TGG | + | chr1_4:75642018-75642037 | None:intergenic | 10.0% |
!!! | TAATATTTTTTTAGGTAAAG+GGG | - | chr1_4:75635265-75635284 | Msa0185430:three_prime_UTR | 15.0% |
!!! | TTCCATTTTCTATATTTTTT+TGG | - | chr1_4:75635781-75635800 | Msa0185430:intron | 15.0% |
!!! | TCCATTTTCTATATTTTTTT+GGG | - | chr1_4:75635782-75635801 | Msa0185430:intron | 15.0% |
!! | TGTAACATAAAAAAAATATG+GGG | + | chr1_4:75636091-75636110 | None:intergenic | 15.0% |
!! | GTGTAACATAAAAAAAATAT+GGG | + | chr1_4:75636092-75636111 | None:intergenic | 15.0% |
!! | TGTGTAACATAAAAAAAATA+TGG | + | chr1_4:75636093-75636112 | None:intergenic | 15.0% |
!!! | CTAAACAATTTTTTTTTTAC+AGG | + | chr1_4:75636239-75636258 | None:intergenic | 15.0% |
!!! | GAATATTTTATTTTAGGTTT+TGG | + | chr1_4:75638936-75638955 | None:intergenic | 15.0% |
!!! | GATTTGGAATATTTTATTTT+AGG | + | chr1_4:75638942-75638961 | None:intergenic | 15.0% |
!!! | ATTAAGTTGTTTATTCAAAT+AGG | - | chr1_4:75639836-75639855 | Msa0185430:intron | 15.0% |
!!! | TTAAGTTGTTTATTCAAATA+GGG | - | chr1_4:75639837-75639856 | Msa0185430:intron | 15.0% |
!! | TCTTATATTCTATTCTATTT+AGG | - | chr1_4:75641105-75641124 | Msa0185430:intron | 15.0% |
!!! | GAAAATGCAATTTTTTTTTT+TGG | + | chr1_4:75641628-75641647 | None:intergenic | 15.0% |
!! | TAAATTTAAAAAATGGGAAA+CGG | + | chr1_4:75642011-75642030 | None:intergenic | 15.0% |
!! | TTCAAAAATAAACAAATTAC+AGG | - | chr1_4:75642290-75642309 | Msa0185430:intron | 15.0% |
!!! | AACAAATAAAAGAGTGTATT+TGG | - | chr1_4:75635216-75635235 | Msa0185430:three_prime_UTR | 20.0% |
!!! | CGGTGTTATAATATTTTTTT+AGG | - | chr1_4:75635257-75635276 | Msa0185430:three_prime_UTR | 20.0% |
!!! | AATATTTTTTTAGGTAAAGG+GGG | - | chr1_4:75635266-75635285 | Msa0185430:three_prime_UTR | 20.0% |
!!! | TTAGATTTTAACCTTTTTTG+TGG | + | chr1_4:75635378-75635397 | None:intergenic | 20.0% |
!!! | TTTTTGTACATAAGGATAAA+TGG | - | chr1_4:75635421-75635440 | Msa0185430:intron | 20.0% |
!!! | TTTTGTACATAAGGATAAAT+GGG | - | chr1_4:75635422-75635441 | Msa0185430:intron | 20.0% |
!! | TTCAACAATTCATAAACTTA+CGG | + | chr1_4:75635517-75635536 | None:intergenic | 20.0% |
!! | GGAATTAAATTAAGCAAAAA+AGG | + | chr1_4:75635765-75635784 | None:intergenic | 20.0% |
!! | TCCCAAAAAAATATAGAAAA+TGG | + | chr1_4:75635786-75635805 | None:intergenic | 20.0% |
!! | TTGTAATGTTTCGTTAATAT+TGG | - | chr1_4:75635879-75635898 | Msa0185430:intron | 20.0% |
!!! | AGTATAATTTGTTGTATCAT+TGG | - | chr1_4:75636623-75636642 | Msa0185430:CDS | 20.0% |
!!! | CAATTCATTGTTATTATAGT+TGG | + | chr1_4:75636709-75636728 | None:intergenic | 20.0% |
!!! | GTTTGCAATTTTAATACATT+CGG | + | chr1_4:75636881-75636900 | None:intergenic | 20.0% |
!! | ATAACATAATCAATATGTGA+AGG | - | chr1_4:75638194-75638213 | Msa0185430:intron | 20.0% |
!! | ATTATAACACTCTTCAATAT+CGG | + | chr1_4:75638288-75638307 | None:intergenic | 20.0% |
!!! | ATAGATATAATTTTGCAGTT+TGG | + | chr1_4:75638776-75638795 | None:intergenic | 20.0% |
!! | AACTTGGAAATTCTTAATTT+AGG | + | chr1_4:75639071-75639090 | None:intergenic | 20.0% |
!! | AGAAAAGAAAAAAGCTATAT+TGG | + | chr1_4:75639376-75639395 | None:intergenic | 20.0% |
!! | ACAAAAACTAAAGACTTATT+TGG | - | chr1_4:75639618-75639637 | Msa0185430:intron | 20.0% |
!! | ACAGTATAAGATATAAATGA+GGG | + | chr1_4:75640494-75640513 | None:intergenic | 20.0% |
!!! | GAACATTTAGAATTGTTTTA+AGG | + | chr1_4:75640854-75640873 | None:intergenic | 20.0% |
!!! | AATGCAATTTTTTTTTTTGG+TGG | + | chr1_4:75641625-75641644 | None:intergenic | 20.0% |
!!! | CATCTTAAATTGCAATTTTA+GGG | - | chr1_4:75641856-75641875 | Msa0185430:intron | 20.0% |
! | GGAAAATATCGTGAAATATA+CGG | - | chr1_4:75635237-75635256 | Msa0185430:three_prime_UTR | 25.0% |
! | TAATAATTTCTCTTCTCACT+TGG | - | chr1_4:75635292-75635311 | Msa0185430:three_prime_UTR | 25.0% |
! | AATATGCAATAGAATATGCA+AGG | - | chr1_4:75635331-75635350 | Msa0185430:CDS | 25.0% |
! | AACGAAACATTACAATATGA+GGG | + | chr1_4:75635874-75635893 | None:intergenic | 25.0% |
! | TAACGAAACATTACAATATG+AGG | + | chr1_4:75635875-75635894 | None:intergenic | 25.0% |
!! | ACTGATTGTAGAAGTATAAA+GGG | - | chr1_4:75636158-75636177 | Msa0185430:intron | 25.0% |
! | CAAAGAATCTTCAAATTACA+GGG | + | chr1_4:75636269-75636288 | None:intergenic | 25.0% |
! | AAATTCGCTCAAATTACATA+GGG | - | chr1_4:75636347-75636366 | Msa0185430:CDS | 25.0% |
! | ACAAATTATACTTCTACGAT+CGG | + | chr1_4:75636615-75636634 | None:intergenic | 25.0% |
! | ACTTATTTCATATGTTGGAT+TGG | + | chr1_4:75636684-75636703 | None:intergenic | 25.0% |
! | TGGATACTTATTTCATATGT+TGG | + | chr1_4:75636689-75636708 | None:intergenic | 25.0% |
! | ATTCACTAAAGAGATATTTG+AGG | - | chr1_4:75636981-75637000 | Msa0185430:intron | 25.0% |
! | AGAACTTAAGTTCAATTCTT+AGG | - | chr1_4:75637058-75637077 | Msa0185430:intron | 25.0% |
! | ACATTAAGATACTATATCGA+TGG | - | chr1_4:75637198-75637217 | Msa0185430:intron | 25.0% |
!!! | GCTAACTAGTATTTTAAGAT+CGG | + | chr1_4:75637236-75637255 | None:intergenic | 25.0% |
! | AAATTCGACAAATTTCTGAA+TGG | + | chr1_4:75637301-75637320 | None:intergenic | 25.0% |
! | TTGATATTGTAAACACTGAA+AGG | - | chr1_4:75637397-75637416 | Msa0185430:intron | 25.0% |
! | TGATATTGTAAACACTGAAA+GGG | - | chr1_4:75637398-75637417 | Msa0185430:intron | 25.0% |
! | AAAATCAATCTTCTTTCCTT+GGG | + | chr1_4:75637876-75637895 | None:intergenic | 25.0% |
! | AAAAATCAATCTTCTTTCCT+TGG | + | chr1_4:75637877-75637896 | None:intergenic | 25.0% |
! | ATGTTTATAGAGAAACCTAA+CGG | - | chr1_4:75638125-75638144 | Msa0185430:intron | 25.0% |
! | TGTTATCTGTTATAACAGAT+TGG | + | chr1_4:75638180-75638199 | None:intergenic | 25.0% |
! | AAGAATGTTAGCTGAATTAT+TGG | - | chr1_4:75638432-75638451 | Msa0185430:intron | 25.0% |
! | ATTGAATTGAACGACAAAAA+GGG | + | chr1_4:75639184-75639203 | None:intergenic | 25.0% |
! | TCTATTCTACTTCTATACAA+AGG | - | chr1_4:75639485-75639504 | Msa0185430:intron | 25.0% |
!! | CTATACAAAGGATTTAAGAT+AGG | - | chr1_4:75639497-75639516 | Msa0185430:intron | 25.0% |
!!! | TCTTTAGTTTTTGTTAAGAG+AGG | + | chr1_4:75639612-75639631 | None:intergenic | 25.0% |
!! | GTTGTTATTATAAGCTATCA+TGG | + | chr1_4:75639759-75639778 | None:intergenic | 25.0% |
!!! | TTCCTTTTTGTTTTCTGTAT+TGG | + | chr1_4:75640018-75640037 | None:intergenic | 25.0% |
! | TACAGAAAACAAAAAGGAAA+AGG | - | chr1_4:75640019-75640038 | Msa0185430:CDS | 25.0% |
! | CAAAAAGGAAAAGGATTATT+TGG | - | chr1_4:75640028-75640047 | Msa0185430:CDS | 25.0% |
!! | TAAGACTTTGTTTGAGAATT+AGG | + | chr1_4:75640372-75640391 | None:intergenic | 25.0% |
! | AAATTATTGTGTATGTTGGA+TGG | + | chr1_4:75640463-75640482 | None:intergenic | 25.0% |
! | CACAGTATAAGATATAAATG+AGG | + | chr1_4:75640495-75640514 | None:intergenic | 25.0% |
! | AAAACAATTCTAAATGTTCC+AGG | - | chr1_4:75640855-75640874 | Msa0185430:intron | 25.0% |
! | TATGTCACTAAAAGCTAATA+AGG | - | chr1_4:75640988-75641007 | Msa0185430:intron | 25.0% |
!!! | AAGAGATGCTTATTTTGAAA+GGG | + | chr1_4:75641401-75641420 | None:intergenic | 25.0% |
!!! | TAAGAGATGCTTATTTTGAA+AGG | + | chr1_4:75641402-75641421 | None:intergenic | 25.0% |
! | TCTTGATATAGTTTCATGTA+TGG | - | chr1_4:75641705-75641724 | Msa0185430:intron | 25.0% |
!! | AGCATTACATTTTCATACTT+CGG | + | chr1_4:75641812-75641831 | None:intergenic | 25.0% |
! | CCTAAAATTGCAATTTAAGA+TGG | + | chr1_4:75641858-75641877 | None:intergenic | 25.0% |
!! | CCATCTTAAATTGCAATTTT+AGG | - | chr1_4:75641855-75641874 | Msa0185430:intron | 25.0% |
! | TCCATGTCATTATATTCATT+CGG | + | chr1_4:75642083-75642102 | None:intergenic | 25.0% |
!!! | CAGAATGATGTTTTAAAGAT+CGG | + | chr1_4:75642129-75642148 | None:intergenic | 25.0% |
!! | CTTGATTTCATTTTACATAC+AGG | - | chr1_4:75642162-75642181 | Msa0185430:five_prime_UTR | 25.0% |
!!! | AAGTAATTTTGATCCTTCAT+AGG | + | chr1_4:75642272-75642291 | None:intergenic | 25.0% |
AATAGAATATGCAAGGTCTA+GGG | - | chr1_4:75635338-75635357 | Msa0185430:CDS | 30.0% | |
!! | GATTTTAACCTTTTTTGTGG+TGG | + | chr1_4:75635375-75635394 | None:intergenic | 30.0% |
CATAAGGATAAATGGGAATT+TGG | - | chr1_4:75635429-75635448 | Msa0185430:intron | 30.0% | |
! | TACGGCTTCAATTTTTGTTA+TGG | + | chr1_4:75635499-75635518 | None:intergenic | 30.0% |
!! | GTGTCTTGTTTATGATTCTT+GGG | + | chr1_4:75635577-75635596 | None:intergenic | 30.0% |
AAGGTGTGAATGAATGAAAA+AGG | + | chr1_4:75635746-75635765 | None:intergenic | 30.0% | |
TTTCAAAATAGTCACTTCGT+TGG | - | chr1_4:75635838-75635857 | Msa0185430:intron | 30.0% | |
!!! | TCAGCGACTATTTTGAAATT+TGG | - | chr1_4:75636014-75636033 | Msa0185430:intron | 30.0% |
TGACTACTCATCACATATTT+AGG | - | chr1_4:75636048-75636067 | Msa0185430:intron | 30.0% | |
GACTACTCATCACATATTTA+GGG | - | chr1_4:75636049-75636068 | Msa0185430:intron | 30.0% | |
CTTTATACTTCTACAATCAG+TGG | + | chr1_4:75636159-75636178 | None:intergenic | 30.0% | |
! | CACTGATTGTAGAAGTATAA+AGG | - | chr1_4:75636157-75636176 | Msa0185430:intron | 30.0% |
TGTTTACCCTGTAATATTAG+CGG | - | chr1_4:75636189-75636208 | Msa0185430:intron | 30.0% | |
TAGAAACCGCTAATATTACA+GGG | + | chr1_4:75636408-75636427 | None:intergenic | 30.0% | |
ATAGAAACCGCTAATATTAC+AGG | + | chr1_4:75636199-75636218 | None:intergenic | 30.0% | |
CCAAAGAATCTTCAAATTAC+AGG | + | chr1_4:75636270-75636289 | None:intergenic | 30.0% | |
CCTGTAATTTGAAGATTCTT+TGG | - | chr1_4:75636267-75636286 | Msa0185430:CDS | 30.0% | |
! | ATTTGAAGATTCTTTGGTTC+TGG | - | chr1_4:75636273-75636292 | Msa0185430:CDS | 30.0% |
TGTACTGTCAAAATTCATGA+AGG | + | chr1_4:75636300-75636319 | None:intergenic | 30.0% | |
! | GACAGTACATAGTTTGTATA+TGG | - | chr1_4:75636311-75636330 | Msa0185430:CDS | 30.0% |
! | AGTACATAGTTTGTATATGG+CGG | - | chr1_4:75636314-75636333 | Msa0185430:CDS | 30.0% |
GAAATTCGCTCAAATTACAT+AGG | - | chr1_4:75636346-75636365 | Msa0185430:CDS | 30.0% | |
TAGAAACCGCTAATATTACA+TGG | - | chr1_4:75636408-75636427 | Msa0185430:CDS | 30.0% | |
AGAAACCGCTAATATTACAT+GGG | - | chr1_4:75636409-75636428 | Msa0185430:CDS | 30.0% | |
TTTACCCCATGTAATATTAG+CGG | + | chr1_4:75636417-75636436 | None:intergenic | 30.0% | |
! | ACACAATGTGTTTGGATTTT+CGG | + | chr1_4:75636661-75636680 | None:intergenic | 30.0% |
! | CTCACAATTTGCAAGTTTTA+TGG | + | chr1_4:75636735-75636754 | None:intergenic | 30.0% |
!! | ATACTTGTTTTCCCATTACT+GGG | + | chr1_4:75636821-75636840 | None:intergenic | 30.0% |
!! | CTCTTTGGTTTGTAGTTATA+GGG | - | chr1_4:75636917-75636936 | Msa0185430:intron | 30.0% |
GCTTAACACAGTTCAATAAA+TGG | + | chr1_4:75637258-75637277 | None:intergenic | 30.0% | |
!! | GTAAACACATGTGTTGATTT+CGG | - | chr1_4:75637428-75637447 | Msa0185430:intron | 30.0% |
!! | ATAGCTGGTCTATAATTTTC+AGG | - | chr1_4:75637507-75637526 | Msa0185430:intron | 30.0% |
AGAATATGTCATAGTTCATG+TGG | - | chr1_4:75637656-75637675 | Msa0185430:intron | 30.0% | |
! | GTTTTTCTTTTCTTCCAGAT+TGG | - | chr1_4:75637836-75637855 | Msa0185430:intron | 30.0% |
!!! | GACGATTTTGAAACTCTAAA+CGG | - | chr1_4:75637955-75637974 | Msa0185430:intron | 30.0% |
AAACTAATGTGAGTTAGCTA+AGG | - | chr1_4:75638098-75638117 | Msa0185430:intron | 30.0% | |
ATACTTAACTGCAATTCAGT+TGG | - | chr1_4:75638148-75638167 | Msa0185430:intron | 30.0% | |
! | TATGTGAAGGTTTTTCTGAA+AGG | - | chr1_4:75638207-75638226 | Msa0185430:intron | 30.0% |
TGATGTATGTACTACTTTAG+AGG | + | chr1_4:75638361-75638380 | None:intergenic | 30.0% | |
CATGTATCAATGACAAAAGA+CGG | - | chr1_4:75638396-75638415 | Msa0185430:intron | 30.0% | |
ATGTTAGCTGAATTATTGGT+TGG | - | chr1_4:75638436-75638455 | Msa0185430:intron | 30.0% | |
TGTCAAATTGAGTTTCATGT+TGG | - | chr1_4:75638698-75638717 | Msa0185430:intron | 30.0% | |
! | GATATAATTTTGCAGTTTGG+CGG | + | chr1_4:75638773-75638792 | None:intergenic | 30.0% |
ATATTCCAAATCTAGAGATC+TGG | - | chr1_4:75638950-75638969 | Msa0185430:intron | 30.0% | |
! | ATTTTCCAGATCTCTAGATT+TGG | + | chr1_4:75638958-75638977 | None:intergenic | 30.0% |
GACTAACTGACTAATAATAG+AGG | + | chr1_4:75639107-75639126 | None:intergenic | 30.0% | |
GATTGAATTGAACGACAAAA+AGG | + | chr1_4:75639185-75639204 | None:intergenic | 30.0% | |
TTATTGCATCACTTTACCAA+AGG | + | chr1_4:75639217-75639236 | None:intergenic | 30.0% | |
GTTCTGCAATATTAAGTCAA+AGG | - | chr1_4:75639327-75639346 | Msa0185430:intron | 30.0% | |
! | TACAAAGGATTTAAGATAGG+CGG | - | chr1_4:75639500-75639519 | Msa0185430:intron | 30.0% |
! | ATCATTTTCATCCATCTTGA+GGG | + | chr1_4:75639558-75639577 | None:intergenic | 30.0% |
! | TATCATTTTCATCCATCTTG+AGG | + | chr1_4:75639559-75639578 | None:intergenic | 30.0% |
! | GTTTTTGTTAAGAGAGGAAA+TGG | + | chr1_4:75639606-75639625 | None:intergenic | 30.0% |
!!! | AATCATCGGTGCATTTTTTT+AGG | + | chr1_4:75639863-75639882 | None:intergenic | 30.0% |
! | AAAATGCACCGATGATTAAA+AGG | - | chr1_4:75639866-75639885 | Msa0185430:intron | 30.0% |
! | GAACTGATCCTTTTAATCAT+CGG | + | chr1_4:75639877-75639896 | None:intergenic | 30.0% |
CACCAATACAGAAAACAAAA+AGG | - | chr1_4:75640013-75640032 | Msa0185430:CDS | 30.0% | |
! | GTGTTGAATCTCTTGATTTT+CGG | + | chr1_4:75640063-75640082 | None:intergenic | 30.0% |
AGATTATTTGGAGGGAAATT+AGG | + | chr1_4:75640298-75640317 | None:intergenic | 30.0% | |
GTCTTACAGAAACTACATTA+AGG | - | chr1_4:75640386-75640405 | Msa0185430:intron | 30.0% | |
GAGGAAATTATTGTGTATGT+TGG | + | chr1_4:75640467-75640486 | None:intergenic | 30.0% | |
! | GAAGCTTAGGATTTAAAACT+CGG | + | chr1_4:75640563-75640582 | None:intergenic | 30.0% |
ATAACGCATAGACTTCTAAA+TGG | + | chr1_4:75640634-75640653 | None:intergenic | 30.0% | |
CGAGTTATATGTCTACATTA+TGG | + | chr1_4:75640668-75640687 | None:intergenic | 30.0% | |
CTCGTAACTGTAATGTAATA+AGG | - | chr1_4:75640684-75640703 | Msa0185430:intron | 30.0% | |
CTGTAATGTAATAAGGAAGA+AGG | - | chr1_4:75640691-75640710 | Msa0185430:intron | 30.0% | |
! | GATTCTCTTTTCTTTGTTGA+AGG | - | chr1_4:75641190-75641209 | Msa0185430:intron | 30.0% |
CATCTCTTATATCATCAACT+TGG | - | chr1_4:75641413-75641432 | Msa0185430:intron | 30.0% | |
! | GGGAAAAAAAAATGGTTTTC+TGG | - | chr1_4:75641493-75641512 | Msa0185430:intron | 30.0% |
GACAATGCATAAAATATGCA+AGG | - | chr1_4:75641577-75641596 | Msa0185430:intron | 30.0% | |
!!! | GCAATTTTTTTTTTTGGTGG+CGG | + | chr1_4:75641622-75641641 | None:intergenic | 30.0% |
!!! | TAGGTTTTGAAAGCTTCAAA+GGG | + | chr1_4:75641652-75641671 | None:intergenic | 30.0% |
GATATAGTTTCATGTATGGA+AGG | - | chr1_4:75641709-75641728 | Msa0185430:intron | 30.0% | |
! | TTTGAAACAAATTCACCAGT+AGG | - | chr1_4:75641735-75641754 | Msa0185430:intron | 30.0% |
ATGAGAACAACTTTCCTTAT+GGG | + | chr1_4:75641769-75641788 | None:intergenic | 30.0% | |
! | GCATTACATTTTCATACTTC+GGG | + | chr1_4:75641811-75641830 | None:intergenic | 30.0% |
!! | AATTGCAATTTTAGGGATGA+AGG | - | chr1_4:75641863-75641882 | Msa0185430:intron | 30.0% |
CCATGTCATTATATTCATTC+GGG | + | chr1_4:75642082-75642101 | None:intergenic | 30.0% | |
TATGCTAGAGATTACAAAAG+AGG | - | chr1_4:75642204-75642223 | Msa0185430:five_prime_UTR | 30.0% | |
CAATAGAATATGCAAGGTCT+AGG | - | chr1_4:75635337-75635356 | Msa0185430:CDS | 35.0% | |
!! | GGTGTCTTGTTTATGATTCT+TGG | + | chr1_4:75635578-75635597 | None:intergenic | 35.0% |
!!! | TGTGCTGTTTTAATCAGTTG+TGG | + | chr1_4:75635599-75635618 | None:intergenic | 35.0% |
ATTAAAACAGCACAAGACAC+TGG | - | chr1_4:75635605-75635624 | Msa0185430:intron | 35.0% | |
!! | GTCTTACACTTTGCTGTTAA+CGG | - | chr1_4:75635629-75635648 | Msa0185430:intron | 35.0% |
! | GTTTTCTGTTAAGCAGTTGT+CGG | - | chr1_4:75635670-75635689 | Msa0185430:intron | 35.0% |
AATGAAAAAGGAACGAACCA+GGG | + | chr1_4:75635734-75635753 | None:intergenic | 35.0% | |
ATAATTATTAATCCGTGCCC+AGG | - | chr1_4:75636129-75636148 | Msa0185430:intron | 35.0% | |
TAATTATTAATCCGTGCCCA+GGG | - | chr1_4:75636130-75636149 | Msa0185430:intron | 35.0% | |
GAATCTTCAAATTACAGGGT+TGG | + | chr1_4:75636265-75636284 | None:intergenic | 35.0% | |
GAAACCGCTAATATTACATG+GGG | - | chr1_4:75636410-75636429 | Msa0185430:CDS | 35.0% | |
TGAGTATTAATCTGTGCTCA+AGG | - | chr1_4:75636583-75636602 | Msa0185430:intron | 35.0% | |
AATTATACTTCTACGATCGG+TGG | + | chr1_4:75636612-75636631 | None:intergenic | 35.0% | |
!! | GATACTTGTTTTCCCATTAC+TGG | + | chr1_4:75636822-75636841 | None:intergenic | 35.0% |
CCTATAACTACAAACCAAAG+AGG | + | chr1_4:75636919-75636938 | None:intergenic | 35.0% | |
!! | CCTCTTTGGTTTGTAGTTAT+AGG | - | chr1_4:75636916-75636935 | Msa0185430:intron | 35.0% |
CTTCTGAACAATTTGTGCTT+TGG | + | chr1_4:75637040-75637059 | None:intergenic | 35.0% | |
! | GCACTGACAAATTAGATTGA+CGG | + | chr1_4:75637476-75637495 | None:intergenic | 35.0% |
TTCAACGTCTTCAACCAATT+GGG | + | chr1_4:75637551-75637570 | None:intergenic | 35.0% | |
! | TCTTTTCTTCCAGATTGGAT+TGG | - | chr1_4:75637841-75637860 | Msa0185430:intron | 35.0% |
!! | GAAGATTGATTTTTCTCAGC+AGG | - | chr1_4:75637883-75637902 | Msa0185430:intron | 35.0% |
CATTGTAAAGCCAAAGAATG+AGG | + | chr1_4:75637924-75637943 | None:intergenic | 35.0% | |
ATTGCAGTTAAGTATCCGTT+AGG | + | chr1_4:75638143-75638162 | None:intergenic | 35.0% | |
!! | TGAAGGTTTTTCTGAAAGGA+TGG | - | chr1_4:75638211-75638230 | Msa0185430:intron | 35.0% |
CTAACATTCTTCAGCAAGAA+AGG | + | chr1_4:75638423-75638442 | None:intergenic | 35.0% | |
TACTTGAGAATAATGATGCG+AGG | - | chr1_4:75638645-75638664 | Msa0185430:intron | 35.0% | |
AGTTTCATGTTGGAACAGAA+AGG | - | chr1_4:75638708-75638727 | Msa0185430:intron | 35.0% | |
GAATGTTCACATCCAAGAAA+TGG | + | chr1_4:75639150-75639169 | None:intergenic | 35.0% | |
TTCTTGGATGTGAACATTCT+TGG | - | chr1_4:75639151-75639170 | Msa0185430:intron | 35.0% | |
ACTATAAAGAGAGATGTCGA+TGG | + | chr1_4:75639399-75639418 | None:intergenic | 35.0% | |
AGTGTTTATTCTCTGTCCTA+AGG | - | chr1_4:75639453-75639472 | Msa0185430:intron | 35.0% | |
! | TCATTTTCATCCATCTTGAG+GGG | + | chr1_4:75639557-75639576 | None:intergenic | 35.0% |
CAAATAATCTCTCCCGAATA+CGG | - | chr1_4:75640308-75640327 | Msa0185430:intron | 35.0% | |
! | CTTTGTTTGAGAATTAGGAG+AGG | + | chr1_4:75640367-75640386 | None:intergenic | 35.0% |
! | TTGTGTATGTTGGATGGTTT+TGG | + | chr1_4:75640457-75640476 | None:intergenic | 35.0% |
AGATATAAATGAGGGTTTCG+AGG | + | chr1_4:75640486-75640505 | None:intergenic | 35.0% | |
TAAATCCTAAGCTTCCTTTC+AGG | - | chr1_4:75640568-75640587 | Msa0185430:intron | 35.0% | |
TTAGAAGTCTATGCGTTATG+TGG | - | chr1_4:75640635-75640654 | Msa0185430:intron | 35.0% | |
!! | TAATAAGGAAGAAGGCATTC+TGG | - | chr1_4:75640699-75640718 | Msa0185430:intron | 35.0% |
TTCAAACCTATAAACATCCC+TGG | - | chr1_4:75640737-75640756 | Msa0185430:intron | 35.0% | |
CAGAAAAATTGTAAGGTCCA+GGG | + | chr1_4:75640757-75640776 | None:intergenic | 35.0% | |
!! | GTGCTTATTTTTCCTTCTCT+GGG | - | chr1_4:75640960-75640979 | Msa0185430:intron | 35.0% |
CTATTTAGGTCTCTTCTGAT+AGG | - | chr1_4:75641119-75641138 | Msa0185430:intron | 35.0% | |
AGAGAATCTATGTTCGACTT+TGG | + | chr1_4:75641178-75641197 | None:intergenic | 35.0% | |
CTTACGTTATGAATGTTAGC+CGG | + | chr1_4:75641346-75641365 | None:intergenic | 35.0% | |
GCTAACATTCATAACGTAAG+TGG | - | chr1_4:75641346-75641365 | Msa0185430:intron | 35.0% | |
AAAGGGCAAAGTGACAATAA+AGG | + | chr1_4:75641384-75641403 | None:intergenic | 35.0% | |
TGCATAAAATATGCAAGGTC+TGG | - | chr1_4:75641582-75641601 | Msa0185430:intron | 35.0% | |
GCATAAAATATGCAAGGTCT+GGG | - | chr1_4:75641583-75641602 | Msa0185430:intron | 35.0% | |
CATAAAATATGCAAGGTCTG+GGG | - | chr1_4:75641584-75641603 | Msa0185430:intron | 35.0% | |
!!! | CTAGGTTTTGAAAGCTTCAA+AGG | + | chr1_4:75641653-75641672 | None:intergenic | 35.0% |
TGAGAACAACTTTCCTTATG+GGG | + | chr1_4:75641768-75641787 | None:intergenic | 35.0% | |
CATGAGAACAACTTTCCTTA+TGG | + | chr1_4:75641770-75641789 | None:intergenic | 35.0% | |
AATGCTATCTTCAATGCATG+AGG | - | chr1_4:75641826-75641845 | Msa0185430:intron | 35.0% | |
ATGCTATCTTCAATGCATGA+GGG | - | chr1_4:75641827-75641846 | Msa0185430:intron | 35.0% | |
CCCGAATGAATATAATGACA+TGG | - | chr1_4:75642079-75642098 | Msa0185430:exon | 35.0% | |
!!! | TTAACCTTTTTTGTGGTGGC+CGG | + | chr1_4:75635371-75635390 | None:intergenic | 40.0% |
ACGGAGTTTCTGAACAAGAT+TGG | - | chr1_4:75635648-75635667 | Msa0185430:intron | 40.0% | |
CAAAGGAAGGAAGAACAGAA+GGG | + | chr1_4:75635703-75635722 | None:intergenic | 40.0% | |
GAATGAAAAAGGAACGAACC+AGG | + | chr1_4:75635735-75635754 | None:intergenic | 40.0% | |
! | ACATAGTTTGTATATGGCGG+AGG | - | chr1_4:75636317-75636336 | Msa0185430:CDS | 40.0% |
!! | TTGAGTATTGATCTGTGCTC+AGG | - | chr1_4:75636484-75636503 | Msa0185430:intron | 40.0% |
!! | TGAGTATTGATCTGTGCTCA+GGG | - | chr1_4:75636485-75636504 | Msa0185430:intron | 40.0% |
! | TGGATTGGACACAATGTGTT+TGG | + | chr1_4:75636669-75636688 | None:intergenic | 40.0% |
TCATCTTCAAGACCCAGTAA+TGG | - | chr1_4:75636806-75636825 | Msa0185430:intron | 40.0% | |
CATCTTCAAGACCCAGTAAT+GGG | - | chr1_4:75636807-75636826 | Msa0185430:intron | 40.0% | |
AGAATCCTTCCCATGAGATT+CGG | - | chr1_4:75637129-75637148 | Msa0185430:intron | 40.0% | |
GTGCTATGCAAGTTTATAGC+TGG | - | chr1_4:75637492-75637511 | Msa0185430:intron | 40.0% | |
!!! | TTTTCAGGTATGTTGCAGAG+AGG | - | chr1_4:75637522-75637541 | Msa0185430:intron | 40.0% |
TCAACGTCTTCAACCAATTG+GGG | + | chr1_4:75637550-75637569 | None:intergenic | 40.0% | |
CTTCAACGTCTTCAACCAAT+TGG | + | chr1_4:75637552-75637571 | None:intergenic | 40.0% | |
CAATTGGTTGAAGACGTTGA+AGG | - | chr1_4:75637550-75637569 | Msa0185430:intron | 40.0% | |
TATGTCATAGTTCATGTGGC+TGG | - | chr1_4:75637660-75637679 | Msa0185430:intron | 40.0% | |
! | TTCCAGATTGGATTGGACAA+AGG | - | chr1_4:75637848-75637867 | Msa0185430:intron | 40.0% |
ATCCTTTGTCCAATCCAATC+TGG | + | chr1_4:75637853-75637872 | None:intergenic | 40.0% | |
CGTGAGAAATTGCGAGAAAT+CGG | - | chr1_4:75638061-75638080 | Msa0185430:intron | 40.0% | |
CAATACTTCAACCTGCATAG+AGG | + | chr1_4:75638481-75638500 | None:intergenic | 40.0% | |
!! | CTATGCAGGTTGAAGTATTG+AGG | - | chr1_4:75638481-75638500 | Msa0185430:intron | 40.0% |
GTACATTGTGTTCGTGCTTA+CGG | - | chr1_4:75638546-75638565 | Msa0185430:intron | 40.0% | |
TTCATGTTGGAACAGAAAGG+AGG | - | chr1_4:75638711-75638730 | Msa0185430:intron | 40.0% | |
TCATGTTGGAACAGAAAGGA+GGG | - | chr1_4:75638712-75638731 | Msa0185430:intron | 40.0% | |
CTATGTGTTATCGAACACTG+AGG | + | chr1_4:75638911-75638930 | None:intergenic | 40.0% | |
GGAGACGGAAAATAACATGA+AGG | + | chr1_4:75639008-75639027 | None:intergenic | 40.0% | |
TGAGATGCCATGGAAAAGAA+TGG | + | chr1_4:75639029-75639048 | None:intergenic | 40.0% | |
! | TGAAGATGTTTGAGATGCCA+TGG | + | chr1_4:75639039-75639058 | None:intergenic | 40.0% |
AGGTGCACATGTAGATAACT+TGG | + | chr1_4:75639087-75639106 | None:intergenic | 40.0% | |
! | GTTAGTCTATGCAAACTGAC+TGG | - | chr1_4:75639120-75639139 | Msa0185430:intron | 40.0% |
CTGACTGGAATTCCATTTCT+TGG | - | chr1_4:75639135-75639154 | Msa0185430:intron | 40.0% | |
TTCAATCAAACCCGTTCCTT+TGG | - | chr1_4:75639198-75639217 | Msa0185430:intron | 40.0% | |
CATCACTTTACCAAAGGAAC+GGG | + | chr1_4:75639211-75639230 | None:intergenic | 40.0% | |
GCATCACTTTACCAAAGGAA+CGG | + | chr1_4:75639212-75639231 | None:intergenic | 40.0% | |
ACCATCGTATGTTCAAAGAG+CGG | + | chr1_4:75639250-75639269 | None:intergenic | 40.0% | |
ATGTGCAGCTGTCTCTTTAT+GGG | - | chr1_4:75639285-75639304 | Msa0185430:intron | 40.0% | |
GAATAGATTCAACGCACCTT+AGG | + | chr1_4:75639472-75639491 | None:intergenic | 40.0% | |
AGTCTCACAAGTGCTTATGT+TGG | + | chr1_4:75639667-75639686 | None:intergenic | 40.0% | |
TAAGCACTTGTGAGACTGTT+TGG | - | chr1_4:75639670-75639689 | Msa0185430:intron | 40.0% | |
AAGCACTTGTGAGACTGTTT+GGG | - | chr1_4:75639671-75639690 | Msa0185430:intron | 40.0% | |
! | AAGCTATCATGGAGAGCATA+GGG | + | chr1_4:75639748-75639767 | None:intergenic | 40.0% |
! | TAAGCTATCATGGAGAGCAT+AGG | + | chr1_4:75639749-75639768 | None:intergenic | 40.0% |
!! | AACACTGCGAGTTTTATCGA+TGG | - | chr1_4:75640078-75640097 | Msa0185430:intron | 40.0% |
TTATCGATGGCAGCATAAGA+TGG | - | chr1_4:75640091-75640110 | Msa0185430:intron | 40.0% | |
ATGGAAACGTTGGATTTGTG+TGG | - | chr1_4:75640110-75640129 | Msa0185430:intron | 40.0% | |
TGGAAACGTTGGATTTGTGT+GGG | - | chr1_4:75640111-75640130 | Msa0185430:intron | 40.0% | |
AGTTGTGATTGCACCAAGTT+TGG | - | chr1_4:75640163-75640182 | Msa0185430:intron | 40.0% | |
GCGATTCTTGAATCCAAACT+TGG | + | chr1_4:75640179-75640198 | None:intergenic | 40.0% | |
GAAATTAGGAGAGGAATGCA+GGG | + | chr1_4:75640284-75640303 | None:intergenic | 40.0% | |
ATTTGGAGGGAAATTAGGAG+AGG | + | chr1_4:75640293-75640312 | None:intergenic | 40.0% | |
TTCGGGAGAGATTATTTGGA+GGG | + | chr1_4:75640306-75640325 | None:intergenic | 40.0% | |
ATTCGGGAGAGATTATTTGG+AGG | + | chr1_4:75640307-75640326 | None:intergenic | 40.0% | |
CGTATTCGGGAGAGATTATT+TGG | + | chr1_4:75640310-75640329 | None:intergenic | 40.0% | |
AGAATTAGGAGAGGAATGCA+GGG | + | chr1_4:75640358-75640377 | None:intergenic | 40.0% | |
TTGTAGAAGTTGCTCAACTC+TGG | + | chr1_4:75640420-75640439 | None:intergenic | 40.0% | |
TCTAACCTGAAAGGAAGCTT+AGG | + | chr1_4:75640576-75640595 | None:intergenic | 40.0% | |
ACTCGAAAGTCTAACCTGAA+AGG | + | chr1_4:75640585-75640604 | None:intergenic | 40.0% | |
TAAGGTCCAGGGATGTTTAT+AGG | + | chr1_4:75640746-75640765 | None:intergenic | 40.0% | |
GCAGAAAAATTGTAAGGTCC+AGG | + | chr1_4:75640758-75640777 | None:intergenic | 40.0% | |
ATGGGCGCAGAAAAATTGTA+AGG | + | chr1_4:75640764-75640783 | None:intergenic | 40.0% | |
TTCTAAATGTTCCAGGTCTG+TGG | - | chr1_4:75640862-75640881 | Msa0185430:intron | 40.0% | |
TCTAAATGTTCCAGGTCTGT+GGG | - | chr1_4:75640863-75640882 | Msa0185430:intron | 40.0% | |
GTTGTCCTTCATTCTTACCT+AGG | - | chr1_4:75640902-75640921 | Msa0185430:intron | 40.0% | |
CTGAACCTAGGTAAGAATGA+AGG | + | chr1_4:75640910-75640929 | None:intergenic | 40.0% | |
! | GTTCCTGAGTTTTCAAAGCT+TGG | - | chr1_4:75640938-75640957 | Msa0185430:intron | 40.0% |
!! | GGTGCTTATTTTTCCTTCTC+TGG | - | chr1_4:75640959-75640978 | Msa0185430:intron | 40.0% |
TGACATAAGAAACCCAGAGA+AGG | + | chr1_4:75640975-75640994 | None:intergenic | 40.0% | |
CTCTTCTGATAGGATGTTGT+TGG | - | chr1_4:75641129-75641148 | Msa0185430:intron | 40.0% | |
TCTCTTGACAATGTGCTTCA+TGG | - | chr1_4:75641220-75641239 | Msa0185430:intron | 40.0% | |
! | GTAACATCGAAGCATCAGTT+AGG | + | chr1_4:75641303-75641322 | None:intergenic | 40.0% |
! | TTAGTTTGAGCTTGCTCTCT+GGG | - | chr1_4:75641472-75641491 | Msa0185430:intron | 40.0% |
! | GCTCTCTGGGGAAAAAAAAA+TGG | - | chr1_4:75641485-75641504 | Msa0185430:intron | 40.0% |
!!! | TTTTTTTTTTTGGTGGCGGC+CGG | + | chr1_4:75641618-75641637 | None:intergenic | 40.0% |
TTATGGGGAAAGAAACCTAC+TGG | + | chr1_4:75641753-75641772 | None:intergenic | 40.0% | |
AGTAGGTTTCTTTCCCCATA+AGG | - | chr1_4:75641752-75641771 | Msa0185430:intron | 40.0% | |
!! | GCAATTTTAGGGATGAAGGA+TGG | - | chr1_4:75641867-75641886 | Msa0185430:intron | 40.0% |
TAATGACATGGAAGTCTCAC+TGG | - | chr1_4:75642091-75642110 | Msa0185430:five_prime_UTR | 40.0% | |
!! | AAGTCTCACTGGTTTGGTAT+CGG | - | chr1_4:75642102-75642121 | Msa0185430:five_prime_UTR | 40.0% |
AGAATAAGCGAACTGCATTC+TGG | + | chr1_4:75642249-75642268 | None:intergenic | 40.0% | |
GTTCGCTTATTCTCCTATGA+AGG | - | chr1_4:75642256-75642275 | Msa0185430:intron | 40.0% | |
CCAAAGGAAGGAAGAACAGA+AGG | + | chr1_4:75635704-75635723 | None:intergenic | 45.0% | |
CCTTCTGTTCTTCCTTCCTT+TGG | - | chr1_4:75635701-75635720 | Msa0185430:intron | 45.0% | |
AAAAAGGAACGAACCAGGGA+TGG | + | chr1_4:75635730-75635749 | None:intergenic | 45.0% | |
! | AGCGGTTTCTATGTCGTTTC+TGG | - | chr1_4:75636207-75636226 | Msa0185430:intron | 45.0% |
TGTCTTAGTACGTGCCTCTT+TGG | - | chr1_4:75636902-75636921 | Msa0185430:intron | 45.0% | |
GAATCTCATGGGAAGGATTC+TGG | + | chr1_4:75637130-75637149 | None:intergenic | 45.0% | |
GAATCCTTCCCATGAGATTC+GGG | - | chr1_4:75637130-75637149 | Msa0185430:intron | 45.0% | |
TTAACCCTCCCGAATCTCAT+GGG | + | chr1_4:75637141-75637160 | None:intergenic | 45.0% | |
GCTAACAGCTCCTCATTCTT+TGG | - | chr1_4:75637911-75637930 | Msa0185430:intron | 45.0% | |
TTAAGACATCGCCTCTATGC+AGG | - | chr1_4:75638467-75638486 | Msa0185430:intron | 45.0% | |
CGAACACAATGTACAGATGC+TGG | + | chr1_4:75638540-75638559 | None:intergenic | 45.0% | |
CATGTTGGAACAGAAAGGAG+GGG | - | chr1_4:75638713-75638732 | Msa0185430:intron | 45.0% | |
! | TTGCAGTTTGGCGGATCTTA+TGG | + | chr1_4:75638764-75638783 | None:intergenic | 45.0% |
! | TCCGTCTCCATTCTTTTCCA+TGG | - | chr1_4:75639019-75639038 | Msa0185430:intron | 45.0% |
GCCATGGAAAAGAATGGAGA+CGG | + | chr1_4:75639023-75639042 | None:intergenic | 45.0% | |
ACCGCTCTTTGAACATACGA+TGG | - | chr1_4:75639246-75639265 | Msa0185430:intron | 45.0% | |
AGACAGCTGCACATCATAAG+AGG | + | chr1_4:75639279-75639298 | None:intergenic | 45.0% | |
GATGTGCAGCTGTCTCTTTA+TGG | - | chr1_4:75639284-75639303 | Msa0185430:intron | 45.0% | |
TCAAAGGAGTGAGATGCACA+AGG | - | chr1_4:75639343-75639362 | Msa0185430:intron | 45.0% | |
GCAGCATAAGATGGAAACGT+TGG | - | chr1_4:75640100-75640119 | Msa0185430:intron | 45.0% | |
AAACGTTGGATTTGTGTGGG+TGG | - | chr1_4:75640114-75640133 | Msa0185430:intron | 45.0% | |
! | TGCAATCACAACTTGCTTCG+GGG | + | chr1_4:75640156-75640175 | None:intergenic | 45.0% |
! | GTGCAATCACAACTTGCTTC+GGG | + | chr1_4:75640157-75640176 | None:intergenic | 45.0% |
! | GGTGCAATCACAACTTGCTT+CGG | + | chr1_4:75640158-75640177 | None:intergenic | 45.0% |
GGAAATTAGGAGAGGAATGC+AGG | + | chr1_4:75640285-75640304 | None:intergenic | 45.0% | |
GGAGATCACAAACCGTATTC+GGG | + | chr1_4:75640323-75640342 | None:intergenic | 45.0% | |
GGGAGATCACAAACCGTATT+CGG | + | chr1_4:75640324-75640343 | None:intergenic | 45.0% | |
GAGAATTAGGAGAGGAATGC+AGG | + | chr1_4:75640359-75640378 | None:intergenic | 45.0% | |
TTACCTAGGTTCAGCAGAGA+TGG | - | chr1_4:75640916-75640935 | Msa0185430:intron | 45.0% | |
!! | GCACCAAGCTTTGAAAACTC+AGG | + | chr1_4:75640944-75640963 | None:intergenic | 45.0% |
GGCGAAGAAAATGCTGAAGA+TGG | - | chr1_4:75641009-75641028 | Msa0185430:intron | 45.0% | |
! | TTCGACTTTGGTAGAGCATC+GGG | + | chr1_4:75641166-75641185 | None:intergenic | 45.0% |
GTTCGACTTTGGTAGAGCAT+CGG | + | chr1_4:75641167-75641186 | None:intergenic | 45.0% | |
GGGAGAAGAATCAGAAGTTG+AGG | + | chr1_4:75641263-75641282 | None:intergenic | 45.0% | |
TAGGACTTGGGACGAATTAG+CGG | + | chr1_4:75641284-75641303 | None:intergenic | 45.0% | |
! | CGAAGCATCAGTTAGGACTT+GGG | + | chr1_4:75641296-75641315 | None:intergenic | 45.0% |
! | TCGAAGCATCAGTTAGGACT+TGG | + | chr1_4:75641297-75641316 | None:intergenic | 45.0% |
TGATGCTTCGATGTTACCGA+AGG | - | chr1_4:75641306-75641325 | Msa0185430:intron | 45.0% | |
GGATGGTTGAGTGTATCCTT+CGG | + | chr1_4:75641325-75641344 | None:intergenic | 45.0% | |
GAAGGATACACTCAACCATC+CGG | - | chr1_4:75641324-75641343 | Msa0185430:intron | 45.0% | |
CGTTATGAATGTTAGCCGGA+TGG | + | chr1_4:75641342-75641361 | None:intergenic | 45.0% | |
CAGAGAGCAAGCTCAAACTA+AGG | + | chr1_4:75641473-75641492 | None:intergenic | 45.0% | |
! | CTTAGTTTGAGCTTGCTCTC+TGG | - | chr1_4:75641471-75641490 | Msa0185430:intron | 45.0% |
! | TAGTTTGAGCTTGCTCTCTG+GGG | - | chr1_4:75641473-75641492 | Msa0185430:intron | 45.0% |
! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr1_4:75641555-75641574 | Msa0185430:intron | 45.0% |
!!! | TTTTTTTTTTGGTGGCGGCC+GGG | + | chr1_4:75641617-75641636 | None:intergenic | 45.0% |
ACTAGAAGCAGCTGAGAACT+AGG | + | chr1_4:75641671-75641690 | None:intergenic | 45.0% | |
AAACCAACCAGCAAACTAGC+CGG | + | chr1_4:75641960-75641979 | None:intergenic | 45.0% | |
TTAGCCAGACTGCAATACGA+CGG | + | chr1_4:75641988-75642007 | None:intergenic | 45.0% | |
! | ACATGGAAGTCTCACTGGTT+TGG | - | chr1_4:75642096-75642115 | Msa0185430:five_prime_UTR | 45.0% |
!! | AATAATTATATTATATTAGA+CGG | + | chr1_4:75636118-75636137 | None:intergenic | 5.0% |
!!! | TTAAATAATTTTTTTTACAA+AGG | - | chr1_4:75636380-75636399 | Msa0185430:CDS | 5.0% |
!!! | ATTTTAAAATTTGAAAATAA+TGG | - | chr1_4:75638238-75638257 | Msa0185430:intron | 5.0% |
!! | TAAGAATTTAAAAAATATAT+GGG | + | chr1_4:75640782-75640801 | None:intergenic | 5.0% |
!! | ATAAGAATTTAAAAAATATA+TGG | + | chr1_4:75640783-75640802 | None:intergenic | 5.0% |
!! | TAAAAGTAAATTTAAAAAAT+GGG | + | chr1_4:75642017-75642036 | None:intergenic | 5.0% |
! | CAAGGTCTAGGGTTCGAATC+CGG | - | chr1_4:75635349-75635368 | Msa0185430:CDS | 50.0% |
GAATCCGGCCACCACAAAAA+AGG | - | chr1_4:75635364-75635383 | Msa0185430:CDS | 50.0% | |
! | TCGCTGATTGTGCACTCTGT+TGG | + | chr1_4:75636001-75636020 | None:intergenic | 50.0% |
CTACAATCAGTGGTGACCCT+GGG | + | chr1_4:75636149-75636168 | None:intergenic | 50.0% | |
TCTACAATCAGTGGTGACCC+TGG | + | chr1_4:75636150-75636169 | None:intergenic | 50.0% | |
ACCAAGCGATGAAGTTCGAG+TGG | - | chr1_4:75637007-75637026 | Msa0185430:intron | 50.0% | |
ACCACTCGAACTTCATCGCT+TGG | + | chr1_4:75637011-75637030 | None:intergenic | 50.0% | |
GTTAACCCTCCCGAATCTCA+TGG | + | chr1_4:75637142-75637161 | None:intergenic | 50.0% | |
GTGTTGCGTATGTGCGTCAT+AGG | + | chr1_4:75637371-75637390 | None:intergenic | 50.0% | |
GGATTGGACAAAGGATCCCA+AGG | - | chr1_4:75637857-75637876 | Msa0185430:intron | 50.0% | |
TTGGAACAGAAAGGAGGGGA+GGG | - | chr1_4:75638717-75638736 | Msa0185430:intron | 50.0% | |
! | TTGGCGGATCTTATGGTTCG+TGG | + | chr1_4:75638757-75638776 | None:intergenic | 50.0% |
TCCATCACTACCCCTCAAGA+TGG | - | chr1_4:75639544-75639563 | Msa0185430:intron | 50.0% | |
TCCATCTTGAGGGGTAGTGA+TGG | + | chr1_4:75639548-75639567 | None:intergenic | 50.0% | |
AGAGGAATGCAGGGAGGAAA+AGG | + | chr1_4:75640275-75640294 | None:intergenic | 50.0% | |
ATTAGGAGAGGAATGCAGGG+AGG | + | chr1_4:75640281-75640300 | None:intergenic | 50.0% | |
AATGCAGGGAGGGAAAGGAA+GGG | + | chr1_4:75640344-75640363 | None:intergenic | 50.0% | |
TTAGGAGAGGAATGCAGGGA+GGG | + | chr1_4:75640280-75640299 | None:intergenic | 50.0% | |
ATTAGGAGAGGAATGCAGGG+AGG | + | chr1_4:75640281-75640300 | None:intergenic | 50.0% | |
AGGACAACACCAGCAGGAAA+AGG | + | chr1_4:75640890-75640909 | None:intergenic | 50.0% | |
GAATGAAGGACAACACCAGC+AGG | + | chr1_4:75640896-75640915 | None:intergenic | 50.0% | |
GAACCATCTCTGCTGAACCT+AGG | + | chr1_4:75640922-75640941 | None:intergenic | 50.0% | |
AGGACTTGGGACGAATTAGC+GGG | + | chr1_4:75641283-75641302 | None:intergenic | 50.0% | |
CAACTGAGCTAAGCTCACGA+GGG | + | chr1_4:75641552-75641571 | None:intergenic | 50.0% | |
!!! | TTTTTTTTTGGTGGCGGCCG+GGG | + | chr1_4:75641616-75641635 | None:intergenic | 50.0% |
! | CAACGAGTTGAACCGAGAAC+CGG | - | chr1_4:75641938-75641957 | Msa0185430:CDS | 50.0% |
TAGCCAGACTGCAATACGAC+GGG | + | chr1_4:75641987-75642006 | None:intergenic | 50.0% | |
CAGGGATGGAGACCAAAGGA+AGG | + | chr1_4:75635716-75635735 | None:intergenic | 55.0% | |
CTTCCTTTGGTCTCCATCCC+TGG | - | chr1_4:75635714-75635733 | Msa0185430:intron | 55.0% | |
GAACCAGGGATGGAGACCAA+AGG | + | chr1_4:75635720-75635739 | None:intergenic | 55.0% | |
TGTGCTCAGGGTCATCACTC+TGG | - | chr1_4:75636497-75636516 | Msa0185430:intron | 55.0% | |
TTCTGGCAGTACAGTCGAGG+AGG | + | chr1_4:75637113-75637132 | None:intergenic | 55.0% | |
GGATTCTGGCAGTACAGTCG+AGG | + | chr1_4:75637116-75637135 | None:intergenic | 55.0% | |
TCCTTCCCATGAGATTCGGG+AGG | - | chr1_4:75637133-75637152 | Msa0185430:intron | 55.0% | |
CCTTCCCATGAGATTCGGGA+GGG | - | chr1_4:75637134-75637153 | Msa0185430:intron | 55.0% | |
TTGCAGAGAGGAGCCCCAAT+TGG | - | chr1_4:75637534-75637553 | Msa0185430:intron | 55.0% | |
TCTACACCCTCTGCTGCAGT+TGG | - | chr1_4:75637584-75637603 | Msa0185430:intron | 55.0% | |
ACCTCTCCAACTGCAGCAGA+GGG | + | chr1_4:75637593-75637612 | None:intergenic | 55.0% | |
TACCTCTCCAACTGCAGCAG+AGG | + | chr1_4:75637594-75637613 | None:intergenic | 55.0% | |
GTTGGAACAGAAAGGAGGGG+AGG | - | chr1_4:75638716-75638735 | Msa0185430:intron | 55.0% | |
! | TGGAGAGCATAGGGAGAAGC+TGG | + | chr1_4:75639739-75639758 | None:intergenic | 55.0% |
GAATGCAGGGAGGGAAAGGA+AGG | + | chr1_4:75640345-75640364 | None:intergenic | 55.0% | |
AGAGGAATGCAGGGAGGGAA+AGG | + | chr1_4:75640349-75640368 | None:intergenic | 55.0% | |
AGGAAAAGGTCCCACAGACC+TGG | + | chr1_4:75640876-75640895 | None:intergenic | 55.0% | |
! | TCTGTGGGACCTTTTCCTGC+TGG | - | chr1_4:75640878-75640897 | Msa0185430:intron | 55.0% |
CCAACTGAGCTAAGCTCACG+AGG | + | chr1_4:75641553-75641572 | None:intergenic | 55.0% | |
CCTCGTGAGCTTAGCTCAGT+TGG | - | chr1_4:75641550-75641569 | Msa0185430:intron | 55.0% | |
! | AAGGTCTGGGGTTCAAACCC+CGG | - | chr1_4:75641596-75641615 | Msa0185430:intron | 55.0% |
! | CCAGCAAACTAGCCGGTTCT+CGG | + | chr1_4:75641953-75641972 | None:intergenic | 55.0% |
!! | GAACCGGCTAGTTTGCTGGT+TGG | - | chr1_4:75641954-75641973 | Msa0185430:CDS | 55.0% |
AGCCAGACTGCAATACGACG+GGG | + | chr1_4:75641986-75642005 | None:intergenic | 55.0% | |
ATCAGTGGTGACCCTGGGCA+CGG | + | chr1_4:75636144-75636163 | None:intergenic | 60.0% | |
CCCTCCCGAATCTCATGGGA+AGG | + | chr1_4:75637137-75637156 | None:intergenic | 60.0% | |
ACCCTCTGCTGCAGTTGGAG+AGG | - | chr1_4:75637589-75637608 | Msa0185430:intron | 60.0% | |
! | AGAAAGGAGGGGAGGGTGTG+TGG | - | chr1_4:75638724-75638743 | Msa0185430:intron | 60.0% |
! | GAAAGGAGGGGAGGGTGTGT+GGG | - | chr1_4:75638725-75638744 | Msa0185430:intron | 60.0% |
!! | CCGAGAACCGGCTAGTTTGC+TGG | - | chr1_4:75641950-75641969 | Msa0185430:CDS | 60.0% |
ACCCCCGTCGTATTGCAGTC+TGG | - | chr1_4:75641981-75642000 | Msa0185430:CDS | 60.0% | |
GCCAGACTGCAATACGACGG+GGG | + | chr1_4:75641985-75642004 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 75635208 | 75642413 | 75635208 | ID=Msa0185430;Name=Msa0185430 |
chr1_4 | mRNA | 75635208 | 75642413 | 75635208 | ID=Msa0185430-mRNA-1;Parent=Msa0185430;Name=Msa0185430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=241|1|1|1|0.85|0.75|8|113|312 |
chr1_4 | exon | 75635208 | 75635437 | 75635208 | ID=Msa0185430-mRNA-1:exon:25811;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75636261 | 75636494 | 75636261 | ID=Msa0185430-mRNA-1:exon:25810;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75636591 | 75636744 | 75636591 | ID=Msa0185430-mRNA-1:exon:25809;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75639032 | 75639132 | 75639032 | ID=Msa0185430-mRNA-1:exon:25808;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75639717 | 75639767 | 75639717 | ID=Msa0185430-mRNA-1:exon:25807;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75640011 | 75640092 | 75640011 | ID=Msa0185430-mRNA-1:exon:25806;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75641886 | 75642273 | 75641886 | ID=Msa0185430-mRNA-1:exon:25805;Parent=Msa0185430-mRNA-1 |
chr1_4 | exon | 75642361 | 75642413 | 75642361 | ID=Msa0185430-mRNA-1:exon:25804;Parent=Msa0185430-mRNA-1 |
chr1_4 | five_prime_UTR | 75642361 | 75642413 | 75642361 | ID=Msa0185430-mRNA-1:five_prime_utr;Parent=Msa0185430-mRNA-1 |
chr1_4 | five_prime_UTR | 75642086 | 75642273 | 75642086 | ID=Msa0185430-mRNA-1:five_prime_utr;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75641886 | 75642085 | 75641886 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75640011 | 75640092 | 75640011 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75639717 | 75639767 | 75639717 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75639032 | 75639132 | 75639032 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75636591 | 75636744 | 75636591 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75636261 | 75636494 | 75636261 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | CDS | 75635321 | 75635437 | 75635321 | ID=Msa0185430-mRNA-1:cds;Parent=Msa0185430-mRNA-1 |
chr1_4 | three_prime_UTR | 75635208 | 75635320 | 75635208 | ID=Msa0185430-mRNA-1:three_prime_utr;Parent=Msa0185430-mRNA-1 |
Gene Sequence |
Protein sequence |