AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185730 MtrunA17_Chr8g0345831 97.085 343 10 0 1 343 1 343 0.0 696
Msa0185730 MtrunA17_Chr3g0128001 59.202 326 128 3 18 342 15 336 5.71e-147 418
Msa0185730 MtrunA17_Chr1g0179801 44.828 319 166 3 15 323 35 353 5.19e-95 287
Msa0185730 MtrunA17_Chr1g0184161 40.351 342 199 4 4 343 1 339 8.19e-94 283
Msa0185730 MtrunA17_Chr1g0184151 41.033 329 189 4 4 330 1 326 3.54e-92 278
Msa0185730 MtrunA17_Chr5g0426891 40.115 349 196 6 1 343 1 342 8.00e-92 278
Msa0185730 MtrunA17_Chr1g0184101 39.003 341 205 3 4 343 1 339 4.17e-86 263
Msa0185730 MtrunA17_Chr7g0242551 41.975 324 173 7 13 323 21 342 7.83e-86 263
Msa0185730 MtrunA17_Chr7g0265221 37.249 349 196 3 15 343 35 380 1.80e-84 260
Msa0185730 MtrunA17_Chr5g0412651 42.169 332 179 6 21 343 18 345 2.68e-84 258
Msa0185730 MtrunA17_Chr5g0412671 41.641 329 185 6 21 343 18 345 7.65e-84 257
Msa0185730 MtrunA17_Chr7g0250511 37.764 331 203 3 15 343 22 351 3.57e-83 256
Msa0185730 MtrunA17_Chr5g0412681 42.444 311 166 6 29 334 21 323 2.16e-81 251
Msa0185730 MtrunA17_Chr5g0437181 39.645 338 194 6 13 342 20 355 2.78e-81 251
Msa0185730 MtrunA17_Chr4g0006371 40.240 333 175 7 13 323 20 350 1.87e-80 249
Msa0185730 MtrunA17_Chr1g0184121 37.618 319 197 2 13 330 9 326 2.69e-80 248
Msa0185730 MtrunA17_Chr3g0113641 39.820 334 193 5 16 342 24 356 2.54e-79 246
Msa0185730 MtrunA17_Chr1g0184111 36.364 319 201 2 13 330 9 326 1.21e-78 244
Msa0185730 MtrunA17_Chr7g0220001 38.532 327 194 5 7 331 7 328 1.27e-77 241
Msa0185730 MtrunA17_Chr3g0126741 38.922 334 187 9 18 342 35 360 3.25e-77 241
Msa0185730 MtrunA17_Chr7g0220011 38.253 332 194 6 11 336 5 331 5.40e-77 239
Msa0185730 MtrunA17_Chr8g0371931 39.252 321 185 8 18 332 16 332 4.47e-76 238
Msa0185730 MtrunA17_Chr3g0109041 36.176 340 201 6 13 341 16 350 1.17e-75 236
Msa0185730 MtrunA17_Chr6g0455481 36.716 335 203 6 1 331 1 330 5.03e-75 234
Msa0185730 MtrunA17_Chr3g0125201 41.554 296 149 8 41 323 2 286 1.20e-74 233
Msa0185730 MtrunA17_Chr8g0375671 35.465 344 214 6 6 343 16 357 2.72e-74 233
Msa0185730 MtrunA17_Chr8g0375601 35.549 346 213 7 6 343 9 352 8.79e-74 232
Msa0185730 MtrunA17_Chr8g0371921 38.558 319 186 8 20 332 18 332 3.89e-73 231
Msa0185730 MtrunA17_Chr5g0405411 39.935 308 174 8 1 302 1 303 1.12e-71 226
Msa0185730 MtrunA17_Chr8g0365241 34.402 343 216 6 2 339 17 355 3.29e-71 225
Msa0185730 MtrunA17_Chr2g0296371 35.224 335 202 7 18 343 28 356 4.52e-71 225
Msa0185730 MtrunA17_Chr3g0102041 39.482 309 174 8 1 302 1 303 1.48e-70 223
Msa0185730 MtrunA17_Chr5g0420981 34.884 344 214 7 2 339 12 351 1.97e-70 223
Msa0185730 MtrunA17_Chr4g0050031 38.535 314 176 7 40 343 60 366 3.93e-70 223
Msa0185730 MtrunA17_Chr3g0087031 36.812 345 205 9 6 343 22 360 1.46e-67 216
Msa0185730 MtrunA17_Chr2g0314401 36.393 305 190 4 42 343 51 354 2.45e-66 213
Msa0185730 MtrunA17_Chr2g0314381 34.821 336 210 7 13 343 49 380 2.92e-66 213
Msa0185730 MtrunA17_Chr5g0423221 33.811 349 218 8 2 343 31 373 3.52e-66 213
Msa0185730 MtrunA17_Chr8g0375571 33.048 351 221 8 2 343 5 350 4.84e-66 212
Msa0185730 MtrunA17_Chr1g0184241 34.421 337 210 3 11 343 38 367 6.82e-66 212
Msa0185730 MtrunA17_Chr5g0423201 33.224 304 200 3 42 343 47 349 2.35e-65 210
Msa0185730 MtrunA17_Chr5g0423191 31.412 347 228 7 2 343 7 348 3.47e-65 209
Msa0185730 MtrunA17_Chr5g0421011 33.134 335 213 6 14 343 20 348 3.92e-65 209
Msa0185730 MtrunA17_Chr5g0424201 37.700 313 182 6 18 323 20 326 6.91e-65 208
Msa0185730 MtrunA17_Chr7g0225881 35.831 307 185 5 42 341 67 368 7.75e-65 209
Msa0185730 MtrunA17_Chr3g0121141 37.884 293 168 8 40 327 2 285 9.13e-65 207
Msa0185730 MtrunA17_Chr7g0239101 34.925 335 204 8 16 343 29 356 1.56e-64 208
Msa0185730 MtrunA17_Chr2g0314391 36.393 305 190 4 42 343 70 373 1.63e-64 209
Msa0185730 MtrunA17_Chr5g0421101 32.754 345 226 6 2 343 7 348 1.83e-64 208
Msa0185730 MtrunA17_Chr1g0162191 35.404 322 204 4 7 325 12 332 4.20e-64 207
Msa0185730 MtrunA17_Chr8g0336751 35.065 308 190 4 42 343 94 397 1.39e-63 207
Msa0185730 MtrunA17_Chr1g0162361 34.049 326 192 5 15 324 1 319 1.52e-63 205
Msa0185730 MtrunA17_Chr5g0420951 32.267 344 223 7 6 343 16 355 2.09e-63 205
Msa0185730 MtrunA17_Chr8g0348081 33.238 349 216 6 2 343 26 364 2.41e-63 205
Msa0185730 MtrunA17_Chr5g0420941 31.884 345 229 6 2 343 5 346 7.73e-63 204
Msa0185730 MtrunA17_Chr1g0187821 33.651 315 187 4 41 343 66 370 1.27e-62 204
Msa0185730 MtrunA17_Chr7g0239111 33.030 330 215 5 17 343 30 356 1.56e-62 203
Msa0185730 MtrunA17_Chr3g0093761 36.036 333 198 9 18 343 29 353 2.42e-62 202
Msa0185730 MtrunA17_Chr3g0114861 36.970 330 196 7 4 327 3 326 3.39e-62 201
Msa0185730 MtrunA17_Chr8g0336851 33.442 308 196 3 42 343 60 364 3.67e-62 202
Msa0185730 MtrunA17_Chr8g0336781 33.548 310 196 4 41 343 94 400 1.65e-61 201
Msa0185730 MtrunA17_Chr8g0354241 33.758 314 191 5 41 343 67 374 1.66e-61 201
Msa0185730 MtrunA17_Chr5g0423251 29.971 347 233 7 2 343 7 348 2.08e-61 200
Msa0185730 MtrunA17_Chr5g0398291 34.615 338 189 11 1 315 1 329 2.08e-61 200
Msa0185730 MtrunA17_Chr7g0239821 36.129 310 188 6 39 343 61 365 2.19e-61 200
Msa0185730 MtrunA17_Chr7g0239121 32.565 347 218 7 1 343 19 353 2.31e-61 200
Msa0185730 MtrunA17_Chr5g0421041 33.010 309 199 5 39 343 42 346 2.68e-61 199
Msa0185730 MtrunA17_Chr6g0472861 34.503 342 207 8 13 341 34 371 2.87e-61 200
Msa0185730 MtrunA17_Chr1g0162351 32.448 339 194 6 12 323 41 371 4.05e-61 200
Msa0185730 MtrunA17_Chr5g0421091 31.792 346 229 7 2 343 5 347 5.07e-61 199
Msa0185730 MtrunA17_Chr8g0375681 37.132 272 168 3 74 343 15 285 5.86e-61 197
Msa0185730 MtrunA17_Chr5g0439011 37.671 292 164 9 41 323 4 286 8.87e-61 197
Msa0185730 MtrunA17_Chr8g0354261 33.758 314 191 5 41 343 67 374 1.95e-60 198
Msa0185730 MtrunA17_Chr2g0311691 35.235 298 181 4 35 323 56 350 3.20e-60 197
Msa0185730 MtrunA17_Chr5g0420901 33.036 336 210 7 15 343 20 347 5.07e-60 196
Msa0185730 MtrunA17_Chr3g0093741 33.929 336 208 8 15 343 26 354 7.49e-60 196
Msa0185730 MtrunA17_Chr1g0162321 32.153 339 195 6 12 323 41 371 9.02e-60 197
Msa0185730 MtrunA17_Chr2g0311831 35.048 311 186 4 42 343 68 371 9.56e-60 196
Msa0185730 MtrunA17_Chr1g0187831 32.797 311 192 4 42 342 70 373 1.24e-59 196
Msa0185730 MtrunA17_Chr2g0311741 33.784 296 190 3 41 333 26 318 1.36e-59 194
Msa0185730 MtrunA17_Chr8g0336761 31.677 322 210 4 29 343 46 364 2.02e-59 195
Msa0185730 MtrunA17_Chr4g0045411 35.093 322 185 8 20 323 10 325 2.11e-59 194
Msa0185730 MtrunA17_Chr2g0311681 34.932 292 178 4 41 323 62 350 2.50e-59 195
Msa0185730 MtrunA17_Chr3g0093751 34.234 333 205 8 18 343 29 354 3.01e-59 194
Msa0185730 MtrunA17_Chr5g0424211 35.548 301 183 5 18 311 18 314 3.96e-59 193
Msa0185730 MtrunA17_Chr4g0055591 33.140 344 208 6 11 343 29 361 4.62e-59 194
Msa0185730 MtrunA17_Chr4g0045471 35.135 333 186 9 15 323 1 327 6.71e-59 193
Msa0185730 MtrunA17_Chr2g0311631 32.945 343 209 10 13 343 28 361 9.20e-59 193
Msa0185730 MtrunA17_Chr1g0161041 33.234 334 214 7 13 342 66 394 1.23e-58 194
Msa0185730 MtrunA17_Chr2g0311701 33.113 302 190 3 41 333 68 366 1.58e-58 193
Msa0185730 MtrunA17_Chr2g0289341 33.677 291 177 7 40 323 2 283 1.72e-58 191
Msa0185730 MtrunA17_Chr1g0187811 31.361 338 214 5 17 343 163 493 2.64e-58 196
Msa0185730 MtrunA17_Chr7g0266651 34.226 336 213 4 13 343 30 362 3.04e-58 192
Msa0185730 MtrunA17_Chr2g0311921 33.117 308 197 4 42 343 54 358 3.32e-58 192
Msa0185730 MtrunA17_Chr4g0045441 33.837 331 192 7 15 323 1 326 3.77e-58 191
Msa0185730 MtrunA17_Chr7g0235951 33.119 311 197 3 41 343 66 373 3.88e-58 192
Msa0185730 MtrunA17_Chr2g0311711 33.110 299 191 3 41 333 66 361 5.16e-58 192
Msa0185730 MtrunA17_Chr8g0375701 32.012 328 218 5 18 343 31 355 8.48e-58 191
Msa0185730 MtrunA17_Chr4g0045451 33.735 332 193 7 15 324 1 327 1.01e-57 190
Msa0185730 MtrunA17_Chr8g0336861 31.731 312 204 4 39 343 57 366 3.42e-57 189
Msa0185730 MtrunA17_Chr8g0336631 31.579 323 210 5 29 343 46 365 4.00e-57 189
Msa0185730 MtrunA17_Chr4g0045431 35.494 324 182 7 22 323 8 326 1.19e-56 187
Msa0185730 MtrunA17_Chr1g0204181 34.441 331 198 7 5 321 23 348 1.36e-56 188
Msa0185730 MtrunA17_Chr1g0161081 32.938 337 211 6 13 342 43 371 2.24e-56 187
Msa0185730 MtrunA17_Chr2g0311761 33.654 312 190 5 42 343 68 372 3.54e-56 187
Msa0185730 MtrunA17_Chr5g0423211 31.138 334 221 6 15 343 21 350 6.13e-56 186
Msa0185730 MtrunA17_Chr3g0145171 33.220 295 191 6 42 331 52 345 6.42e-56 186
Msa0185730 MtrunA17_Chr7g0239071 35.740 277 175 3 69 343 26 301 1.58e-55 183
Msa0185730 MtrunA17_Chr2g0311861 32.899 307 178 5 42 343 64 347 5.19e-55 183
Msa0185730 MtrunA17_Chr3g0145181 34.520 281 178 4 42 316 49 329 7.25e-54 180
Msa0185730 MtrunA17_Chr8g0364471 30.990 313 205 3 39 343 64 373 1.29e-53 180
Msa0185730 MtrunA17_Chr8g0370711 32.166 314 201 8 38 343 45 354 1.74e-53 179
Msa0185730 MtrunA17_Chr1g0161111 33.033 333 216 5 13 342 102 430 5.40e-53 180
Msa0185730 MtrunA17_Chr8g0351101 32.812 320 201 5 11 320 26 341 4.79e-52 176
Msa0185730 MtrunA17_Chr4g0066121 33.564 289 182 4 42 323 60 345 5.63e-52 176
Msa0185730 MtrunA17_Chr7g0236011 32.588 313 196 4 41 343 66 373 7.11e-52 176
Msa0185730 MtrunA17_Chr1g0191201 32.198 323 191 8 17 322 32 343 1.08e-51 175
Msa0185730 MtrunA17_Chr4g0045461 33.628 339 205 5 15 335 1 337 2.42e-51 174
Msa0185730 MtrunA17_Chr1g0167911 31.307 329 213 6 13 333 26 349 4.09e-51 173
Msa0185730 MtrunA17_Chr7g0232161 36.330 267 158 6 17 277 35 295 5.42e-51 172
Msa0185730 MtrunA17_Chr8g0335411 33.227 313 194 4 41 343 66 373 5.79e-51 173
Msa0185730 MtrunA17_Chr7g0265351 32.588 313 188 8 41 343 38 337 1.33e-50 171
Msa0185730 MtrunA17_Chr6g0474391 34.277 318 173 8 11 307 37 339 1.49e-50 172
Msa0185730 MtrunA17_Chr3g0145201 36.015 261 164 3 59 316 704 964 2.08e-50 180
Msa0185730 MtrunA17_Chr2g0285931 32.907 313 182 8 37 333 23 323 2.49e-50 171
Msa0185730 MtrunA17_Chr8g0370721 32.248 307 199 7 42 343 52 354 2.60e-50 171
Msa0185730 MtrunA17_Chr4g0064781 35.252 278 173 5 42 316 50 323 2.83e-50 171
Msa0185730 MtrunA17_Chr2g0332191 31.343 335 205 8 14 334 24 347 3.04e-50 171
Msa0185730 MtrunA17_Chr1g0167951 31.818 308 201 4 41 343 52 355 8.83e-50 170
Msa0185730 MtrunA17_Chr2g0319491 33.449 287 172 6 42 323 33 305 2.28e-49 168
Msa0185730 MtrunA17_Chr3g0130391 30.618 356 198 10 1 324 20 358 6.53e-48 166
Msa0185730 MtrunA17_Chr7g0247991 33.016 315 192 4 41 343 66 373 1.31e-47 164
Msa0185730 MtrunA17_Chr3g0105281 33.904 292 165 7 39 323 31 301 2.16e-47 162
Msa0185730 MtrunA17_Chr3g0125421 32.615 325 189 9 16 322 14 326 6.00e-47 162
Msa0185730 MtrunA17_Chr3g0114871 34.944 269 157 7 18 279 18 275 9.86e-47 159
Msa0185730 MtrunA17_Chr5g0420721 34.518 197 128 1 148 343 54 250 3.38e-46 157
Msa0185730 MtrunA17_Chr1g0167961 33.219 292 185 5 39 324 66 353 3.40e-46 160
Msa0185730 MtrunA17_Chr4g0066991 31.310 313 180 5 41 343 66 353 4.96e-46 160
Msa0185730 MtrunA17_Chr3g0126761 45.294 170 90 3 156 323 44 212 1.59e-45 155
Msa0185730 MtrunA17_Chr4g0011311 34.800 250 155 3 41 288 66 309 1.68e-45 157
Msa0185730 MtrunA17_Chr2g0313111 31.169 308 186 9 37 333 23 315 3.31e-45 157
Msa0185730 MtrunA17_Chr4g0068891 31.447 318 193 9 38 343 16 320 7.51e-45 156
Msa0185730 MtrunA17_Chr7g0235981 32.482 274 175 3 76 343 58 327 1.04e-44 155
Msa0185730 MtrunA17_Chr6g0488511 34.098 305 171 9 41 331 2 290 2.39e-44 154
Msa0185730 MtrunA17_Chr1g0194321 30.838 334 198 10 32 343 10 332 3.76e-43 152
Msa0185730 MtrunA17_Chr8g0358941 30.159 315 185 7 39 333 24 323 2.03e-42 150
Msa0185730 MtrunA17_Chr1g0148771 32.103 271 161 7 42 303 63 319 5.16e-42 149
Msa0185730 MtrunA17_Chr1g0167931 31.023 303 159 5 39 333 51 311 9.96e-42 147
Msa0185730 MtrunA17_Chr3g0092531 32.526 289 181 6 42 323 6 287 2.60e-41 146
Msa0185730 MtrunA17_Chr7g0239091 30.449 312 201 7 36 343 152 451 6.50e-41 149
Msa0185730 MtrunA17_Chr8g0384461 27.740 292 203 4 41 324 46 337 1.76e-40 145
Msa0185730 MtrunA17_Chr4g0052251 30.392 306 190 7 41 333 28 323 2.40e-40 144
Msa0185730 MtrunA17_Chr2g0314371 32.130 277 157 8 15 264 26 298 1.62e-39 142
Msa0185730 MtrunA17_Chr8g0362741 34.052 232 121 4 41 264 66 273 6.02e-39 139
Msa0185730 MtrunA17_Chr8g0384481 28.814 295 193 6 42 324 59 348 1.12e-37 138
Msa0185730 MtrunA17_Chr4g0075471 48.413 126 62 3 201 323 29 154 6.37e-37 130
Msa0185730 MtrunA17_Chr1g0170631 33.508 191 123 3 156 343 3 192 5.35e-36 129
Msa0185730 MtrunA17_Chr5g0420881 38.889 144 87 1 201 343 1 144 1.07e-34 124
Msa0185730 MtrunA17_Chr8g0336801 38.411 151 90 1 196 343 6 156 1.06e-33 122
Msa0185730 MtrunA17_Chr4g0053251 28.819 288 174 8 41 302 7 289 9.12e-33 124
Msa0185730 MtrunA17_Chr1g0158011 26.978 278 173 8 79 343 1 261 1.15e-32 122
Msa0185730 MtrunA17_Chr5g0394071 36.970 165 98 2 159 323 5 163 1.17e-32 120
Msa0185730 MtrunA17_Chr1g0170641 37.241 145 86 2 14 156 20 161 2.74e-32 118
Msa0185730 MtrunA17_Chr1g0158021 33.953 215 128 8 40 248 47 253 1.72e-31 119
Msa0185730 MtrunA17_Chr3g0138351 28.467 274 188 6 57 325 29 299 1.94e-31 120
Msa0185730 MtrunA17_Chr8g0348951 28.283 297 195 9 39 323 2 292 3.33e-31 120
Msa0185730 MtrunA17_Chr4g0004071 27.414 321 199 9 39 343 6 308 8.65e-31 118
Msa0185730 MtrunA17_Chr4g0037611 40.260 154 84 3 172 323 6 153 1.12e-30 115
Msa0185730 MtrunA17_Chr7g0233661 40.000 145 77 2 181 323 1 137 2.45e-30 113
Msa0185730 MtrunA17_Chr6g0486831 27.687 307 199 7 45 329 21 326 3.25e-30 117
Msa0185730 MtrunA17_Chr4g0055911 29.773 309 188 9 37 326 4 302 1.45e-29 115
Msa0185730 MtrunA17_Chr4g0004061 27.184 309 194 8 39 330 6 300 2.86e-29 114
Msa0185730 MtrunA17_Chr4g0064771 36.517 178 110 3 157 331 27 204 3.61e-29 111
Msa0185730 MtrunA17_Chr8g0336871 33.526 173 106 2 169 338 3 169 4.77e-29 110
Msa0185730 MtrunA17_Chr7g0247741 28.814 295 184 10 42 323 11 292 6.99e-29 113
Msa0185730 MtrunA17_Chr2g0293931 34.359 195 116 6 159 342 10 203 7.88e-29 110
Msa0185730 MtrunA17_Chr4g0009561 26.481 287 198 7 57 335 29 310 1.47e-28 112
Msa0185730 MtrunA17_Chr1g0148781 27.541 305 196 8 34 325 11 303 2.39e-28 112
Msa0185730 MtrunA17_Chr5g0407781 29.310 290 184 9 40 323 3 277 4.55e-28 110
Msa0185730 MtrunA17_Chr8g0389941 28.239 301 186 11 62 340 51 343 7.24e-28 111
Msa0185730 MtrunA17_Chr1g0184141 41.270 126 72 2 84 208 4 128 1.93e-27 104
Msa0185730 MtrunA17_Chr4g0009541 26.102 295 199 9 42 323 7 295 2.27e-27 109
Msa0185730 MtrunA17_Chr8g0364171 44.144 111 62 0 154 264 16 126 6.03e-27 103
Msa0185730 MtrunA17_Chr5g0407731 28.125 288 192 8 39 323 30 305 2.81e-26 107
Msa0185730 MtrunA17_Chr7g0219991 49.038 104 51 2 157 259 249 351 7.16e-26 106
Msa0185730 MtrunA17_Chr7g0219991 32.237 152 98 3 7 156 5 153 2.11e-19 87.8
Msa0185730 MtrunA17_Chr8g0336831 31.148 183 121 2 42 221 60 240 1.63e-25 103
Msa0185730 MtrunA17_Chr4g0055871 27.832 309 189 10 37 326 4 297 2.08e-24 101
Msa0185730 MtrunA17_Chr3g0092581 31.677 161 105 3 166 323 1 159 7.87e-22 91.3
Msa0185730 MtrunA17_Chr2g0319521 35.455 110 71 0 155 264 15 124 9.05e-22 89.7
Msa0185730 MtrunA17_Chr1g0158031 30.108 186 116 6 166 343 1 180 1.05e-21 90.9
Msa0185730 MtrunA17_Chr1g0167921 38.136 118 67 1 159 270 52 169 2.28e-20 87.0
Msa0185730 MtrunA17_Chr7g0256741 26.316 323 192 14 37 335 5 305 1.29e-19 88.2
Msa0185730 MtrunA17_Chr8g0375581 42.353 85 48 1 177 260 1 85 1.35e-19 82.0
Msa0185730 MtrunA17_Chr7g0235991 32.000 150 89 3 42 185 21 163 1.19e-18 82.8
Msa0185730 MtrunA17_Chr2g0311641 33.813 139 87 4 13 149 28 163 2.24e-18 81.3
Msa0185730 MtrunA17_Chr1g0161101 41.584 101 49 2 196 295 401 492 8.10e-17 81.3
Msa0185730 MtrunA17_Chr2g0311611 45.070 71 32 1 201 264 1 71 1.71e-16 73.2
Msa0185730 MtrunA17_Chr8g0375641 31.410 156 100 5 6 156 16 169 2.11e-15 73.6
Msa0185730 MtrunA17_Chr8g0375661 31.677 161 103 5 1 156 11 169 3.31e-15 72.8
Msa0185730 MtrunA17_Chr2g0311751 32.353 102 67 1 41 140 26 127 3.02e-14 70.1
Msa0185730 MtrunA17_Chr3g0092571 32.787 122 73 3 42 159 6 122 3.68e-13 65.9
Msa0185730 MtrunA17_Chr2g0311621 35.165 91 57 2 13 103 28 116 1.25e-12 63.9
Msa0185730 MtrunA17_Chr8g0364161 30.252 119 71 2 41 157 66 174 4.25e-12 64.3
Msa0185730 MtrunA17_Chr8g0336791 27.941 136 93 2 42 174 60 193 1.17e-11 63.2
Msa0185730 MtrunA17_Chr5g0420891 28.662 157 107 5 2 156 6 159 2.37e-11 61.6
Msa0185730 MtrunA17_Chr2g0314361 38.667 75 46 0 265 339 1 75 4.87e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185730 AT4G10490.1 62.899 345 126 1 1 343 1 345 7.09e-171 479
Msa0185730 AT4G10500.1 62.682 343 126 2 2 343 5 346 7.14e-167 469
Msa0185730 AT5G24530.1 54.386 342 145 6 7 341 1 338 2.22e-139 399
Msa0185730 AT2G36690.2 40.683 322 185 2 15 330 29 350 1.73e-88 270
Msa0185730 AT2G36690.1 40.683 322 185 2 15 330 29 350 1.73e-88 270
Msa0185730 AT2G44800.1 37.838 333 203 4 13 342 22 353 1.25e-81 252
Msa0185730 AT3G60290.1 37.879 330 199 5 17 342 26 353 1.05e-78 245
Msa0185730 AT5G05600.1 39.185 319 184 6 13 323 33 349 7.69e-75 235
Msa0185730 AT5G07480.1 35.202 321 194 5 14 325 20 335 4.85e-74 233
Msa0185730 AT3G51240.1 36.418 335 203 8 4 332 1 331 3.43e-73 231
Msa0185730 AT2G38240.1 37.429 350 205 7 1 339 1 347 2.80e-71 226
Msa0185730 AT3G11180.2 39.688 320 181 8 13 323 62 378 4.73e-71 227
Msa0185730 AT3G11180.1 39.688 320 181 8 13 323 62 378 5.77e-71 226
Msa0185730 AT5G08640.2 37.855 317 190 4 18 330 19 332 3.90e-70 222
Msa0185730 AT5G08640.1 37.855 317 190 4 18 330 19 332 3.90e-70 222
Msa0185730 AT1G78550.1 33.236 343 223 5 6 343 15 356 4.13e-70 223
Msa0185730 AT3G55970.1 36.023 347 199 9 13 342 20 360 8.81e-70 222
Msa0185730 AT3G21420.1 35.735 347 211 7 8 343 17 362 9.74e-68 217
Msa0185730 AT4G16330.2 37.162 296 172 5 41 331 66 352 1.53e-67 216
Msa0185730 AT1G17020.1 32.951 349 226 6 2 343 11 358 1.92e-66 213
Msa0185730 AT3G13610.1 34.030 335 211 5 13 343 33 361 6.37e-66 212
Msa0185730 AT1G55290.1 34.451 328 204 6 18 340 37 358 1.05e-65 211
Msa0185730 AT1G77330.1 36.789 299 172 6 41 330 2 292 1.70e-65 209
Msa0185730 AT1G17010.1 33.238 349 225 7 2 343 11 358 2.61e-64 208
Msa0185730 AT3G19010.1 35.692 325 185 6 40 343 26 347 4.24e-64 207
Msa0185730 AT3G19010.4 35.692 325 185 6 40 343 26 347 4.24e-64 207
Msa0185730 AT4G25300.1 33.430 344 222 6 6 343 14 356 6.17e-64 207
Msa0185730 AT1G06620.1 34.091 308 195 3 41 343 61 365 6.30e-63 204
Msa0185730 AT3G12900.1 33.540 322 204 6 13 330 28 343 2.16e-62 203
Msa0185730 AT4G25420.1 34.385 317 194 5 17 323 39 351 2.20e-62 203
Msa0185730 AT1G03410.2 34.835 333 203 7 11 333 24 352 2.82e-62 202
Msa0185730 AT5G63590.1 37.037 297 180 5 34 323 1 297 4.75e-62 201
Msa0185730 AT1G12010.1 37.063 286 167 8 42 323 7 283 7.21e-62 200
Msa0185730 AT1G03410.1 34.835 333 203 7 11 333 61 389 7.94e-62 202
Msa0185730 AT3G19000.1 34.337 332 193 5 15 324 1 329 8.17e-62 201
Msa0185730 AT1G78550.2 34.545 275 177 3 71 343 5 278 3.62e-60 195
Msa0185730 AT2G30840.1 33.724 341 215 7 11 343 25 362 7.02e-60 196
Msa0185730 AT2G30830.1 33.546 313 199 4 37 343 49 358 2.28e-59 195
Msa0185730 AT4G25310.1 34.722 288 181 5 59 343 70 353 4.35e-59 194
Msa0185730 AT1G04380.1 33.548 310 191 5 41 343 44 345 7.60e-59 193
Msa0185730 AT5G05600.2 39.231 260 148 6 13 264 33 290 1.05e-58 191
Msa0185730 AT5G59530.1 30.678 339 223 5 13 343 30 364 2.01e-58 193
Msa0185730 AT4G22880.1 32.808 317 199 7 13 315 13 329 2.17e-58 192
Msa0185730 AT4G22880.2 32.808 317 199 7 13 315 13 329 2.17e-58 192
Msa0185730 AT4G22880.3 32.808 317 199 7 13 315 13 329 2.17e-58 192
Msa0185730 AT5G51810.1 32.399 321 203 5 11 323 35 349 2.28e-58 193
Msa0185730 AT1G62380.1 34.948 289 169 9 42 323 7 283 8.96e-58 190
Msa0185730 AT1G04350.1 31.858 339 213 8 15 343 30 360 1.63e-57 190
Msa0185730 AT1G06640.1 34.936 312 189 7 41 343 63 369 3.09e-57 190
Msa0185730 AT1G15550.1 34.694 294 171 5 40 323 55 337 2.35e-56 187
Msa0185730 AT1G05010.1 36.996 273 160 7 40 307 2 267 4.68e-56 186
Msa0185730 AT1G06645.1 34.936 312 186 6 41 343 76 379 6.55e-56 187
Msa0185730 AT1G06650.2 33.762 311 194 5 41 343 63 369 1.29e-55 186
Msa0185730 AT5G07200.1 31.988 322 201 7 16 323 35 352 2.07e-55 186
Msa0185730 AT2G30840.3 33.138 341 211 8 11 343 25 356 5.48e-55 184
Msa0185730 AT5G12270.1 33.235 340 208 10 14 343 29 359 7.91e-55 183
Msa0185730 AT1G03400.1 31.757 296 189 4 41 332 55 341 1.08e-54 183
Msa0185730 AT3G51240.2 37.600 250 149 6 87 332 1 247 1.51e-54 180
Msa0185730 AT4G16330.1 37.200 250 148 4 87 331 1 246 3.61e-54 179
Msa0185730 AT5G20400.1 33.828 337 204 11 8 331 9 339 7.51e-54 181
Msa0185730 AT3G55970.2 36.803 269 147 9 13 264 20 282 1.41e-53 178
Msa0185730 AT5G63600.1 30.450 289 188 5 42 326 33 312 2.58e-53 178
Msa0185730 AT5G59540.1 32.550 298 191 6 42 332 61 355 3.14e-53 179
Msa0185730 AT3G19010.3 32.615 325 165 7 40 343 26 317 3.83e-53 178
Msa0185730 AT5G07480.2 36.283 226 136 3 107 325 2 226 6.07e-53 175
Msa0185730 AT5G43450.1 33.230 322 199 6 12 327 35 346 9.56e-53 178
Msa0185730 AT5G63600.2 30.690 290 187 6 42 326 33 313 1.40e-52 176
Msa0185730 AT1G49390.1 33.033 333 212 9 8 331 9 339 2.12e-52 177
Msa0185730 AT5G43440.1 30.619 307 207 4 41 343 61 365 3.28e-52 177
Msa0185730 AT1G06620.2 38.053 226 135 2 41 264 61 283 9.55e-52 173
Msa0185730 AT1G60980.1 30.820 305 193 5 16 306 34 334 2.68e-51 174
Msa0185730 AT3G19000.2 32.857 280 163 5 15 272 1 277 9.15e-51 170
Msa0185730 AT1G80340.1 32.895 304 182 6 31 323 38 330 1.27e-50 172
Msa0185730 AT5G54000.2 33.028 327 202 9 8 322 9 330 2.33e-50 171
Msa0185730 AT2G19590.1 35.238 315 167 10 42 340 11 304 3.22e-50 170
Msa0185730 AT3G61400.1 32.102 352 202 11 1 330 22 358 3.46e-50 171
Msa0185730 AT5G20550.1 32.036 334 215 9 8 331 9 340 1.33e-49 169
Msa0185730 AT2G25450.1 32.362 309 198 6 42 343 55 359 1.68e-49 169
Msa0185730 AT1G03400.2 29.321 324 188 5 41 332 55 369 5.81e-49 169
Msa0185730 AT1G78440.1 31.190 311 179 9 42 333 18 312 7.83e-49 167
Msa0185730 AT5G63595.1 34.130 293 156 8 29 306 9 279 1.01e-48 165
Msa0185730 AT1G30040.1 32.039 309 182 9 39 333 28 322 3.67e-47 163
Msa0185730 AT3G19010.2 36.214 243 135 4 40 265 26 265 6.28e-47 161
Msa0185730 AT1G44090.1 29.882 338 208 10 11 331 36 361 1.48e-46 162
Msa0185730 AT1G80330.1 33.119 311 180 9 29 323 35 333 2.63e-46 161
Msa0185730 AT1G49390.2 34.733 262 164 6 75 331 1 260 3.91e-46 158
Msa0185730 AT1G04380.2 36.522 230 134 3 41 266 44 265 5.22e-46 158
Msa0185730 AT2G30840.2 34.884 258 160 4 11 263 25 279 1.51e-45 157
Msa0185730 AT5G54000.1 34.902 255 154 6 75 322 1 250 3.12e-45 155
Msa0185730 AT1G06640.2 36.752 234 140 4 41 270 63 292 7.69e-45 156
Msa0185730 AT1G06640.3 37.500 224 132 4 41 260 63 282 1.38e-43 152
Msa0185730 AT5G43440.2 34.498 229 147 2 41 268 61 287 2.10e-43 152
Msa0185730 AT5G43935.1 31.959 291 168 8 39 323 16 282 6.74e-43 150
Msa0185730 AT1G06650.1 36.283 226 138 2 41 263 63 285 7.57e-43 151
Msa0185730 AT4G21200.1 29.283 321 172 6 28 323 23 313 8.66e-43 151
Msa0185730 AT5G51810.2 32.075 265 166 5 11 267 35 293 2.38e-42 149
Msa0185730 AT5G63580.2 37.826 230 130 5 41 264 18 240 6.26e-42 146
Msa0185730 AT4G25420.2 32.061 262 164 5 17 268 39 296 1.54e-41 147
Msa0185730 AT5G43450.2 33.588 262 161 4 12 270 35 286 1.88e-41 146
Msa0185730 AT5G63580.1 37.719 228 129 5 41 262 18 238 2.01e-41 145
Msa0185730 AT1G02400.1 30.897 301 184 8 37 323 19 309 2.17e-41 147
Msa0185730 AT3G61400.2 33.213 277 162 7 1 264 22 288 3.22e-41 146
Msa0185730 AT4G25310.2 30.314 287 167 6 59 343 70 325 3.64e-41 147
Msa0185730 AT4G25300.2 36.649 191 119 2 155 343 72 262 5.05e-41 144
Msa0185730 AT2G34555.1 31.058 293 179 7 42 323 27 307 3.09e-40 144
Msa0185730 AT2G19590.2 34.737 285 149 10 72 340 26 289 7.58e-40 142
Msa0185730 AT5G59540.2 33.480 227 144 4 42 264 61 284 4.83e-39 140
Msa0185730 AT1G47990.1 29.012 324 186 11 42 342 15 317 1.90e-36 134
Msa0185730 AT3G47190.1 30.068 296 173 9 42 323 32 307 4.40e-35 130
Msa0185730 AT1G50960.1 26.524 328 222 6 1 323 1 314 7.69e-35 130
Msa0185730 AT5G58660.1 30.159 315 163 11 42 323 34 324 9.89e-34 127
Msa0185730 AT3G50210.4 27.645 293 185 7 37 302 3 295 1.23e-33 127
Msa0185730 AT3G50210.1 27.645 293 185 7 37 302 3 295 1.23e-33 127
Msa0185730 AT3G50210.3 27.645 293 185 7 37 302 3 295 1.23e-33 127
Msa0185730 AT1G30040.2 32.083 240 135 9 39 264 28 253 1.11e-32 123
Msa0185730 AT4G21690.1 27.609 297 186 7 62 337 61 349 2.16e-32 124
Msa0185730 AT4G23340.1 30.370 270 169 8 65 323 30 291 8.56e-32 122
Msa0185730 AT1G52820.1 27.305 282 179 5 62 331 36 303 2.47e-31 120
Msa0185730 AT3G46490.1 27.329 322 199 10 28 323 3 315 8.25e-30 116
Msa0185730 AT3G49630.3 26.236 263 180 4 53 302 26 287 1.56e-29 115
Msa0185730 AT3G49630.1 26.538 260 177 4 56 302 33 291 1.98e-29 115
Msa0185730 AT3G49620.1 26.296 270 185 6 46 302 48 316 1.11e-28 114
Msa0185730 AT1G02400.2 29.918 244 148 7 37 267 19 252 4.03e-28 110
Msa0185730 AT3G46500.5 30.097 309 174 10 41 323 16 308 2.72e-27 109
Msa0185730 AT1G35190.1 27.961 304 194 8 41 323 11 310 6.76e-27 108
Msa0185730 AT4G03070.1 27.869 305 187 9 42 327 14 304 1.42e-25 105
Msa0185730 AT3G46490.2 26.710 307 188 11 28 308 3 298 5.38e-25 103
Msa0185730 AT1G35190.2 27.815 302 174 9 41 323 11 287 1.76e-24 101
Msa0185730 AT5G58660.2 29.412 255 134 9 42 264 34 274 3.65e-24 100
Msa0185730 AT1G14130.1 27.397 292 189 10 42 325 9 285 9.10e-24 99.8
Msa0185730 AT3G46500.7 30.357 280 153 10 41 294 16 279 1.25e-23 99.4
Msa0185730 AT4G23340.2 32.948 173 108 4 159 323 1 173 4.03e-23 95.9
Msa0185730 AT5G51310.1 26.132 287 181 11 59 323 19 296 1.63e-22 96.7
Msa0185730 AT1G52800.1 26.117 291 194 8 39 318 7 287 1.66e-22 96.7
Msa0185730 AT1G52820.2 28.837 215 127 5 62 264 36 236 3.37e-21 91.7
Msa0185730 AT2G06960.1 31.481 162 90 4 173 330 1 145 5.68e-21 88.2
Msa0185730 AT3G50210.2 31.707 164 105 4 146 302 50 213 2.24e-20 89.4
Msa0185730 AT1G14120.2 25.899 278 193 6 42 316 8 275 1.38e-18 85.5
Msa0185730 AT1G14120.1 25.899 278 193 6 42 316 8 275 1.38e-18 85.5
Msa0185730 AT1G14120.3 25.899 278 193 6 42 316 8 275 1.38e-18 85.5
Msa0185730 AT3G49630.2 29.814 161 109 3 145 302 59 218 1.73e-18 84.3
Msa0185730 AT1G28030.1 25.817 306 181 11 41 320 12 297 2.73e-18 84.7
Msa0185730 AT4G22870.1 42.857 84 47 1 233 315 2 85 6.94e-18 79.0
Msa0185730 AT1G80320.1 22.695 282 192 7 62 329 33 302 7.02e-18 83.6
Msa0185730 AT4G16765.3 31.579 171 105 6 142 301 44 213 1.59e-17 80.9
Msa0185730 AT4G16765.6 31.579 171 105 6 142 301 44 213 2.30e-17 80.9
Msa0185730 AT4G16765.1 31.579 171 105 6 142 301 44 213 2.30e-17 80.9
Msa0185730 AT4G16765.2 31.579 171 105 6 142 301 44 213 2.30e-17 80.9
Msa0185730 AT3G46500.10 28.638 213 135 6 119 323 31 234 1.60e-16 78.6
Msa0185730 AT3G46500.1 28.638 213 135 6 119 323 31 234 1.60e-16 78.6
Msa0185730 AT3G46500.4 33.133 166 98 5 170 323 8 172 2.40e-16 76.6
Msa0185730 AT1G15540.2 23.494 332 215 10 32 337 2 320 3.08e-16 79.0
Msa0185730 AT1G15540.1 24.000 325 208 10 39 337 6 317 3.51e-16 78.6
Msa0185730 AT1G15540.4 24.000 325 208 10 39 337 6 317 3.51e-16 78.6
Msa0185730 AT1G15540.3 24.000 325 208 10 39 337 13 324 3.94e-16 78.6
Msa0185730 AT4G16770.1 28.241 216 130 7 42 241 22 228 2.08e-15 75.5
Msa0185730 AT4G22870.2 42.105 76 43 1 241 315 51 126 2.13e-15 73.2
Msa0185730 AT4G03050.2 35.043 117 74 2 211 325 271 387 2.65e-15 77.0
Msa0185730 AT4G03050.1 35.043 117 74 2 211 325 271 387 2.65e-15 77.0
Msa0185730 AT1G52790.1 26.333 300 181 13 42 320 5 285 1.74e-14 73.6
Msa0185730 AT3G46480.1 31.429 175 103 5 153 315 91 260 2.53e-14 72.8
Msa0185730 AT3G46500.3 30.319 188 106 7 119 294 31 205 7.56e-13 67.4
Msa0185730 AT3G46500.6 34.307 137 77 5 170 294 39 174 1.78e-12 65.9
Msa0185730 AT3G46500.8 34.307 137 77 5 170 294 39 174 1.78e-12 65.9
Msa0185730 AT4G16765.4 30.216 139 86 5 144 271 46 184 1.23e-11 63.2

Find 91 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCAACCCACCTTCTTTC+AGG 0.174684 1_4:+76451273 Msa0185730:CDS
TTGACTGAAATACCTGAATT+TGG 0.206503 1_4:-76451841 None:intergenic
GCACATGCATGTCAAAATTA+TGG 0.232786 1_4:+76450633 Msa0185730:CDS
AACAAAATGGTAATGACATT+TGG 0.270674 1_4:-76451725 None:intergenic
ATGAATACTACAACAAATTC+TGG 0.275217 1_4:+76452407 Msa0185730:CDS
AAGTCCTTAAGGATGGTAAA+TGG 0.277078 1_4:+76451771 Msa0185730:CDS
GAAAGTCTAGTTGTCTTTAA+TGG 0.283274 1_4:-76451155 None:intergenic
AATTTGAAGGGACATGATTA+AGG 0.284326 1_4:-76450488 None:intergenic
TTCATATGATTTGCATGTAT+TGG 0.314941 1_4:+76452610 Msa0185730:three_prime_UTR
GACATGCATGTGCAATCTTT+TGG 0.333511 1_4:-76450623 None:intergenic
TGGCTTCATTGTGGCCATAT+TGG 0.337767 1_4:-76450442 None:intergenic
TCTACCTTCATTCTCCAATA+TGG 0.344680 1_4:+76450428 None:intergenic
CAATATTGGTGACCAAATTC+AGG 0.349384 1_4:+76451829 Msa0185730:CDS
AGACCGAGAAAGTTTCAAAT+TGG 0.357191 1_4:+76451195 Msa0185730:CDS
GAGGCAATATCAGAAAGTTT+AGG 0.366647 1_4:+76451584 Msa0185730:CDS
ATATTGACTATGAAGGTATT+AGG 0.372243 1_4:-76451812 None:intergenic
ACAAAATGGTAATGACATTT+GGG 0.372425 1_4:-76451724 None:intergenic
ATCCCTACCATTGATCTTCA+AGG 0.375888 1_4:+76450570 Msa0185730:CDS
ATGTTATTTATAACCTCCTC+TGG 0.376503 1_4:-76451065 None:intergenic
AATACCTTCATAGTCAATAT+TGG 0.379500 1_4:+76451815 Msa0185730:CDS
AATATCAGAAAGTTTAGGTT+TGG 0.380712 1_4:+76451589 Msa0185730:CDS
TCTCCAATTTGAAACTTTCT+CGG 0.381665 1_4:-76451198 None:intergenic
TTACCCATTTACCATCCTTA+AGG 0.392445 1_4:-76451775 None:intergenic
ACTATGAAGGTATTAGGAAC+GGG 0.404465 1_4:-76451806 None:intergenic
GGCTGGTTTGCAAGTCCTTA+AGG 0.413016 1_4:+76451760 Msa0185730:CDS
TCAAATTTCATTAGACCCAT+TGG 0.418848 1_4:+76450504 Msa0185730:CDS
TCATGTGCCTTCACTTCAAA+AGG 0.432980 1_4:-76452501 None:intergenic
CCATATGTTAGGTCTGGTTC+AGG 0.433305 1_4:-76451683 None:intergenic
ATTTGAAGGGACATGATTAA+GGG 0.441945 1_4:-76450487 None:intergenic
GTGAATTGAAGTTGAAGATC+TGG 0.443492 1_4:-76450534 None:intergenic
AGAAAGTTTAGGTTTGGAAA+AGG 0.443602 1_4:+76451595 Msa0185730:CDS
GAGCTGGCAAACCATATGTT+AGG 0.448148 1_4:-76451694 None:intergenic
TACAACAAATTCTGGAATAG+AGG 0.452603 1_4:+76452415 Msa0185730:CDS
CTGAAAGAAGGTGGGTTGGC+AGG 0.457585 1_4:-76451272 None:intergenic
GTTAGGTCTGGTTCAGGACA+TGG 0.458532 1_4:-76451677 None:intergenic
TTAGGTCTGGTTCAGGACAT+GGG 0.462988 1_4:-76451676 None:intergenic
ATGGGTCTAATGAAATTTGA+AGG 0.463124 1_4:-76450501 None:intergenic
AACAACGCACTTGGCAAGCA+TGG 0.463170 1_4:+76451626 Msa0185730:CDS
AGTCCTTAAGGATGGTAAAT+GGG 0.467028 1_4:+76451772 Msa0185730:CDS
AACCTGTGTGGACATGTTCA+AGG 0.478953 1_4:+76452450 Msa0185730:CDS
TTGAAGATTATGTTCATGAA+TGG 0.482362 1_4:+76451249 Msa0185730:CDS
GGCAAACCATATGTTAGGTC+TGG 0.485923 1_4:-76451689 None:intergenic
GTCACCAATATTGACTATGA+AGG 0.486217 1_4:-76451819 None:intergenic
CTGAACGATTTGATGCATCA+AGG 0.492517 1_4:-76450593 None:intergenic
CCTGAACCAGACCTAACATA+TGG 0.503669 1_4:+76451683 Msa0185730:CDS
TGGTGAATAGTGAGAAAGAG+AGG 0.505640 1_4:+76452278 Msa0185730:CDS
TTGTCTATGAGTTGAGGAGC+TGG 0.509813 1_4:-76452349 None:intergenic
TTATTCAACTCAAGTCCAAA+AGG 0.511525 1_4:-76452578 None:intergenic
GCTGGTCTTATGATTGCATC+TGG 0.516799 1_4:-76452331 None:intergenic
TAGGTCTGGTTCAGGACATG+GGG 0.527592 1_4:-76451675 None:intergenic
AAGATCTGGACGATCACCAA+TGG 0.532251 1_4:-76450520 None:intergenic
ACATTTGGGTCAGCATGAGC+TGG 0.533879 1_4:-76451710 None:intergenic
TGAAGGGACATGATTAAGGG+TGG 0.539972 1_4:-76450484 None:intergenic
ATCAAGGCCTTGAAGATCAA+TGG 0.540205 1_4:-76450577 None:intergenic
GACTATGAAGGTATTAGGAA+CGG 0.546334 1_4:-76451807 None:intergenic
TTGTTGCAAAATAATGTGGC+TGG 0.551810 1_4:+76451743 Msa0185730:CDS
CTTATGATTGCATCTGGTGA+TGG 0.559599 1_4:-76452325 None:intergenic
CATGATTAAGGGTGGAAACA+AGG 0.560953 1_4:-76450476 None:intergenic
AGATCTGGACGATCACCAAT+GGG 0.565354 1_4:-76450519 None:intergenic
GATTACATAAACAACGCACT+TGG 0.566090 1_4:+76451617 Msa0185730:CDS
TGATCTTTGTCTATGAGTTG+AGG 0.571086 1_4:-76452355 None:intergenic
GGTCTTCACATTGAAACTAG+TGG 0.574098 1_4:-76451177 None:intergenic
AGGCCTTGAAGATCAATGGT+AGG 0.575623 1_4:-76450573 None:intergenic
TATGGCCACAATGAAGCCAT+TGG 0.577357 1_4:+76450446 Msa0185730:exon
GGCCTTGAAGATCAATGGTA+GGG 0.578631 1_4:-76450572 None:intergenic
ACAACGCACTTGGCAAGCAT+GGG 0.581268 1_4:+76451627 Msa0185730:CDS
ATGGTAGGGATAGAATCTGT+GGG 0.581801 1_4:-76450558 None:intergenic
GTACCTGAAAGAAGGTGGGT+TGG 0.586591 1_4:-76451276 None:intergenic
GTGGCCATATTGGAGAATGA+AGG 0.588724 1_4:-76450432 None:intergenic
GAAACAAGGTCGGTTACCAA+TGG 0.597873 1_4:-76450462 None:intergenic
AGGTCTGGTTCAGGACATGG+GGG 0.599013 1_4:-76451674 None:intergenic
TGGGTCTAATGAAATTTGAA+GGG 0.604544 1_4:-76450500 None:intergenic
GGTTTGCAAGTCCTTAAGGA+TGG 0.610109 1_4:+76451764 Msa0185730:CDS
AGTATAGCAGACAATTGAGA+AGG 0.611744 1_4:+76451543 Msa0185730:CDS
GGTTACCAATGGCTTCATTG+TGG 0.612010 1_4:-76450451 None:intergenic
AATGGTAGGGATAGAATCTG+TGG 0.616018 1_4:-76450559 None:intergenic
GCTAGCATTGAGATTGCTTG+AGG 0.622900 1_4:+76451565 Msa0185730:CDS
TCATGAACATAATCTTCAAG+AGG 0.623180 1_4:-76451245 None:intergenic
AACCTTGAACATGTCCACAC+AGG 0.626453 1_4:-76452452 None:intergenic
GAGTGTGCTGCATCGAGCAT+TGG 0.629353 1_4:+76452258 Msa0185730:CDS
TGGCAAGCATGGGCAACACA+TGG 0.629812 1_4:+76451637 Msa0185730:CDS
ATTAAGGGTGGAAACAAGGT+CGG 0.632454 1_4:-76450472 None:intergenic
GGTCTGGTTCAGGACATGGG+GGG 0.635084 1_4:-76451673 None:intergenic
TGGACAGTAGAACGTTGGAA+TGG 0.641192 1_4:-76452305 None:intergenic
CTATGAAGGTATTAGGAACG+GGG 0.642661 1_4:-76451805 None:intergenic
GGTGATGGACAGTAGAACGT+TGG 0.656999 1_4:-76452310 None:intergenic
TGTGAATCATGGAGTTCCAG+AGG 0.659619 1_4:+76451049 Msa0185730:CDS
GAATCATGGAGTTCCAGAGG+AGG 0.684834 1_4:+76451052 Msa0185730:CDS
TGGTAGGGATAGAATCTGTG+GGG 0.714886 1_4:-76450557 None:intergenic
GGTAGGGATAGAATCTGTGG+GGG 0.730114 1_4:-76450556 None:intergenic
ACTTTCGAAAGAAACCTGTG+TGG 0.772070 1_4:+76452438 Msa0185730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATATTAAATTTAACAT+CGG + chr1_4:76452056-76452075 Msa0185730:intron 10.0%
!! AAGAATATTAAATTTAACAT+CGG + chr1_4:76452056-76452075 Msa0185730:intron 10.0%
!! TTAATAAAATAAACAACAAG+TGG - chr1_4:76450831-76450850 None:intergenic 15.0%
!! AATCGAAAATAATATATTTC+CGG + chr1_4:76451402-76451421 Msa0185730:intron 15.0%
!!! GGATTTTGTTTTTTTATTAT+AGG - chr1_4:76452143-76452162 None:intergenic 15.0%
!! ATGAATAAATTATAAGAACT+CGG - chr1_4:76452165-76452184 None:intergenic 15.0%
!!! ATTTTAATAATAGATCCTTT+TGG + chr1_4:76452563-76452582 Msa0185730:three_prime_UTR 15.0%
!! TTAATAAAATAAACAACAAG+TGG - chr1_4:76450831-76450850 None:intergenic 15.0%
!! AATCGAAAATAATATATTTC+CGG + chr1_4:76451402-76451421 Msa0185730:intron 15.0%
!!! GGATTTTGTTTTTTTATTAT+AGG - chr1_4:76452143-76452162 None:intergenic 15.0%
!! ATGAATAAATTATAAGAACT+CGG - chr1_4:76452165-76452184 None:intergenic 15.0%
!!! ATTTTAATAATAGATCCTTT+TGG + chr1_4:76452563-76452582 Msa0185730:three_prime_UTR 15.0%
!! TTGTAAACATTTCATATGTT+GGG - chr1_4:76450778-76450797 None:intergenic 20.0%
!!! AATTTGAAATTAAACTGATG+TGG - chr1_4:76450920-76450939 None:intergenic 20.0%
!!! TTTTTTAAGATTGTGAATCA+TGG + chr1_4:76451038-76451057 Msa0185730:intron 20.0%
!! CATAAAAAACCTATATTTCA+CGG - chr1_4:76451381-76451400 None:intergenic 20.0%
!!! TATCATAAGGATTTAAGTTA+TGG - chr1_4:76451486-76451505 None:intergenic 20.0%
!! ACAATGAAAAGATTATCATA+AGG - chr1_4:76451499-76451518 None:intergenic 20.0%
!!! TTTTCCTTGTAAGAATAATT+TGG - chr1_4:76452034-76452053 None:intergenic 20.0%
!! TATTAAATTTAACATCGGAA+CGG + chr1_4:76452061-76452080 Msa0185730:intron 20.0%
!!! ATTATAGGTCTTGTAATATA+CGG - chr1_4:76452128-76452147 None:intergenic 20.0%
!! TGAATAAATTATAAGAACTC+GGG - chr1_4:76452164-76452183 None:intergenic 20.0%
!! TTGTAAACATTTCATATGTT+GGG - chr1_4:76450778-76450797 None:intergenic 20.0%
!!! AATTTGAAATTAAACTGATG+TGG - chr1_4:76450920-76450939 None:intergenic 20.0%
!!! TTTTTTAAGATTGTGAATCA+TGG + chr1_4:76451038-76451057 Msa0185730:intron 20.0%
!! CATAAAAAACCTATATTTCA+CGG - chr1_4:76451381-76451400 None:intergenic 20.0%
!!! TATCATAAGGATTTAAGTTA+TGG - chr1_4:76451486-76451505 None:intergenic 20.0%
!! ACAATGAAAAGATTATCATA+AGG - chr1_4:76451499-76451518 None:intergenic 20.0%
!!! TTTTCCTTGTAAGAATAATT+TGG - chr1_4:76452034-76452053 None:intergenic 20.0%
!! TATTAAATTTAACATCGGAA+CGG + chr1_4:76452061-76452080 Msa0185730:intron 20.0%
!!! ATTATAGGTCTTGTAATATA+CGG - chr1_4:76452128-76452147 None:intergenic 20.0%
!! TGAATAAATTATAAGAACTC+GGG - chr1_4:76452164-76452183 None:intergenic 20.0%
! TGTAAACATTTCATATGTTG+GGG - chr1_4:76450777-76450796 None:intergenic 25.0%
! GTTGTAAACATTTCATATGT+TGG - chr1_4:76450779-76450798 None:intergenic 25.0%
!! TTTTTCATTCTTTCACTTTC+TGG - chr1_4:76451122-76451141 None:intergenic 25.0%
! TTGAAGATTATGTTCATGAA+TGG + chr1_4:76451249-76451268 Msa0185730:CDS 25.0%
!!! ATATTTTTGTACCTGAAAGA+AGG - chr1_4:76451287-76451306 None:intergenic 25.0%
! AGTATAGATTGTATAAATGC+CGG - chr1_4:76451424-76451443 None:intergenic 25.0%
!!! TTCATTGTGTTTTATTAGAG+AGG + chr1_4:76451511-76451530 Msa0185730:intron 25.0%
!! AATATCAGAAAGTTTAGGTT+TGG + chr1_4:76451589-76451608 Msa0185730:CDS 25.0%
!! ACAAAATGGTAATGACATTT+GGG - chr1_4:76451727-76451746 None:intergenic 25.0%
!! AACAAAATGGTAATGACATT+TGG - chr1_4:76451728-76451747 None:intergenic 25.0%
!!! CACATTATTTTGCAACAAAA+TGG - chr1_4:76451741-76451760 None:intergenic 25.0%
!! CATTTTGTTGCAAAATAATG+TGG + chr1_4:76451739-76451758 Msa0185730:CDS 25.0%
!!! ATATTGACTATGAAGGTATT+AGG - chr1_4:76451815-76451834 None:intergenic 25.0%
! AATACCTTCATAGTCAATAT+TGG + chr1_4:76451815-76451834 Msa0185730:CDS 25.0%
! GAATCCAAATTATTCTTACA+AGG + chr1_4:76452027-76452046 Msa0185730:intron 25.0%
! ATGAATACTACAACAAATTC+TGG + chr1_4:76452407-76452426 Msa0185730:CDS 25.0%
!! TTCATATGATTTGCATGTAT+TGG + chr1_4:76452610-76452629 Msa0185730:three_prime_UTR 25.0%
! TGTAAACATTTCATATGTTG+GGG - chr1_4:76450777-76450796 None:intergenic 25.0%
! GTTGTAAACATTTCATATGT+TGG - chr1_4:76450779-76450798 None:intergenic 25.0%
!! TTTTTCATTCTTTCACTTTC+TGG - chr1_4:76451122-76451141 None:intergenic 25.0%
! TTGAAGATTATGTTCATGAA+TGG + chr1_4:76451249-76451268 Msa0185730:CDS 25.0%
!!! ATATTTTTGTACCTGAAAGA+AGG - chr1_4:76451287-76451306 None:intergenic 25.0%
! AGTATAGATTGTATAAATGC+CGG - chr1_4:76451424-76451443 None:intergenic 25.0%
!!! TTCATTGTGTTTTATTAGAG+AGG + chr1_4:76451511-76451530 Msa0185730:intron 25.0%
!! AATATCAGAAAGTTTAGGTT+TGG + chr1_4:76451589-76451608 Msa0185730:CDS 25.0%
!! ACAAAATGGTAATGACATTT+GGG - chr1_4:76451727-76451746 None:intergenic 25.0%
!! AACAAAATGGTAATGACATT+TGG - chr1_4:76451728-76451747 None:intergenic 25.0%
!!! CACATTATTTTGCAACAAAA+TGG - chr1_4:76451741-76451760 None:intergenic 25.0%
!! CATTTTGTTGCAAAATAATG+TGG + chr1_4:76451739-76451758 Msa0185730:CDS 25.0%
!!! ATATTGACTATGAAGGTATT+AGG - chr1_4:76451815-76451834 None:intergenic 25.0%
! AATACCTTCATAGTCAATAT+TGG + chr1_4:76451815-76451834 Msa0185730:CDS 25.0%
! GAATCCAAATTATTCTTACA+AGG + chr1_4:76452027-76452046 Msa0185730:intron 25.0%
! ATGAATACTACAACAAATTC+TGG + chr1_4:76452407-76452426 Msa0185730:CDS 25.0%
!! TTCATATGATTTGCATGTAT+TGG + chr1_4:76452610-76452629 Msa0185730:three_prime_UTR 25.0%
ATTTGAAGGGACATGATTAA+GGG - chr1_4:76450490-76450509 None:intergenic 30.0%
AATTTGAAGGGACATGATTA+AGG - chr1_4:76450491-76450510 None:intergenic 30.0%
TGGGTCTAATGAAATTTGAA+GGG - chr1_4:76450503-76450522 None:intergenic 30.0%
ATGGGTCTAATGAAATTTGA+AGG - chr1_4:76450504-76450523 None:intergenic 30.0%
TCAAATTTCATTAGACCCAT+TGG + chr1_4:76450504-76450523 Msa0185730:CDS 30.0%
! ATGTTATTTATAACCTCCTC+TGG - chr1_4:76451068-76451087 None:intergenic 30.0%
GAAAGTCTAGTTGTCTTTAA+TGG - chr1_4:76451158-76451177 None:intergenic 30.0%
! TCTCCAATTTGAAACTTTCT+CGG - chr1_4:76451201-76451220 None:intergenic 30.0%
TCATGAACATAATCTTCAAG+AGG - chr1_4:76451248-76451267 None:intergenic 30.0%
CAATTAGATCCGTGAAATAT+AGG + chr1_4:76451369-76451388 Msa0185730:intron 30.0%
! TTTAAGTTATGGTCGAAATG+TGG - chr1_4:76451475-76451494 None:intergenic 30.0%
! AGAAAGTTTAGGTTTGGAAA+AGG + chr1_4:76451595-76451614 Msa0185730:CDS 30.0%
TTGACTGAAATACCTGAATT+TGG - chr1_4:76451844-76451863 None:intergenic 30.0%
! TGTTGATGTGGATTTGAAAT+AGG + chr1_4:76452213-76452232 Msa0185730:intron 30.0%
!! TACAACAAATTCTGGAATAG+AGG + chr1_4:76452415-76452434 Msa0185730:CDS 30.0%
TTATTCAACTCAAGTCCAAA+AGG - chr1_4:76452581-76452600 None:intergenic 30.0%
ATTTGAAGGGACATGATTAA+GGG - chr1_4:76450490-76450509 None:intergenic 30.0%
AATTTGAAGGGACATGATTA+AGG - chr1_4:76450491-76450510 None:intergenic 30.0%
TGGGTCTAATGAAATTTGAA+GGG - chr1_4:76450503-76450522 None:intergenic 30.0%
ATGGGTCTAATGAAATTTGA+AGG - chr1_4:76450504-76450523 None:intergenic 30.0%
TCAAATTTCATTAGACCCAT+TGG + chr1_4:76450504-76450523 Msa0185730:CDS 30.0%
! ATGTTATTTATAACCTCCTC+TGG - chr1_4:76451068-76451087 None:intergenic 30.0%
GAAAGTCTAGTTGTCTTTAA+TGG - chr1_4:76451158-76451177 None:intergenic 30.0%
! TCTCCAATTTGAAACTTTCT+CGG - chr1_4:76451201-76451220 None:intergenic 30.0%
TCATGAACATAATCTTCAAG+AGG - chr1_4:76451248-76451267 None:intergenic 30.0%
CAATTAGATCCGTGAAATAT+AGG + chr1_4:76451369-76451388 Msa0185730:intron 30.0%
! TTTAAGTTATGGTCGAAATG+TGG - chr1_4:76451475-76451494 None:intergenic 30.0%
! AGAAAGTTTAGGTTTGGAAA+AGG + chr1_4:76451595-76451614 Msa0185730:CDS 30.0%
TTGACTGAAATACCTGAATT+TGG - chr1_4:76451844-76451863 None:intergenic 30.0%
! TGTTGATGTGGATTTGAAAT+AGG + chr1_4:76452213-76452232 Msa0185730:intron 30.0%
!! TACAACAAATTCTGGAATAG+AGG + chr1_4:76452415-76452434 Msa0185730:CDS 30.0%
TTATTCAACTCAAGTCCAAA+AGG - chr1_4:76452581-76452600 None:intergenic 30.0%
GTGAATTGAAGTTGAAGATC+TGG - chr1_4:76450537-76450556 None:intergenic 35.0%
GCACATGCATGTCAAAATTA+TGG + chr1_4:76450633-76450652 Msa0185730:CDS 35.0%
TAGCCTAGCGTAAAATTCAT+AGG + chr1_4:76450710-76450729 Msa0185730:intron 35.0%
! ATGCCTATGAATTTTACGCT+AGG - chr1_4:76450716-76450735 None:intergenic 35.0%
GAAAGTTGAAAATTGCGAGT+TGG + chr1_4:76450743-76450762 Msa0185730:intron 35.0%
TTATTGCACCATGAAGTTGT+AGG + chr1_4:76450959-76450978 Msa0185730:intron 35.0%
TATTGCACCATGAAGTTGTA+GGG + chr1_4:76450960-76450979 Msa0185730:intron 35.0%
AGACCGAGAAAGTTTCAAAT+TGG + chr1_4:76451195-76451214 Msa0185730:CDS 35.0%
! TTTTGTACCTGAAAGAAGGT+GGG - chr1_4:76451283-76451302 None:intergenic 35.0%
! TTTTTGTACCTGAAAGAAGG+TGG - chr1_4:76451284-76451303 None:intergenic 35.0%
AGTATAGCAGACAATTGAGA+AGG + chr1_4:76451543-76451562 Msa0185730:CDS 35.0%
GAGGCAATATCAGAAAGTTT+AGG + chr1_4:76451584-76451603 Msa0185730:CDS 35.0%
GATTACATAAACAACGCACT+TGG + chr1_4:76451617-76451636 Msa0185730:CDS 35.0%
TTGTTGCAAAATAATGTGGC+TGG + chr1_4:76451743-76451762 Msa0185730:CDS 35.0%
AAGTCCTTAAGGATGGTAAA+TGG + chr1_4:76451771-76451790 Msa0185730:CDS 35.0%
AGTCCTTAAGGATGGTAAAT+GGG + chr1_4:76451772-76451791 Msa0185730:CDS 35.0%
TTACCCATTTACCATCCTTA+AGG - chr1_4:76451778-76451797 None:intergenic 35.0%
!! ACTATGAAGGTATTAGGAAC+GGG - chr1_4:76451809-76451828 None:intergenic 35.0%
!! GACTATGAAGGTATTAGGAA+CGG - chr1_4:76451810-76451829 None:intergenic 35.0%
! GTCACCAATATTGACTATGA+AGG - chr1_4:76451822-76451841 None:intergenic 35.0%
! CAATATTGGTGACCAAATTC+AGG + chr1_4:76451829-76451848 Msa0185730:CDS 35.0%
CATGAACGTTACAGTTTACA+GGG - chr1_4:76451933-76451952 None:intergenic 35.0%
ACATGAACGTTACAGTTTAC+AGG - chr1_4:76451934-76451953 None:intergenic 35.0%
AATTTAACATCGGAACGGAA+AGG + chr1_4:76452066-76452085 Msa0185730:intron 35.0%
!! AACGGAAAGGTACTAATTTG+TGG + chr1_4:76452079-76452098 Msa0185730:intron 35.0%
!! ACGGAAAGGTACTAATTTGT+GGG + chr1_4:76452080-76452099 Msa0185730:intron 35.0%
TATATGCATGCATGTTGATG+TGG + chr1_4:76452201-76452220 Msa0185730:intron 35.0%
TGATCTTTGTCTATGAGTTG+AGG - chr1_4:76452358-76452377 None:intergenic 35.0%
!!! TTCATCTCCTTTTGAAGTGA+AGG + chr1_4:76452494-76452513 Msa0185730:three_prime_UTR 35.0%
GTGAATTGAAGTTGAAGATC+TGG - chr1_4:76450537-76450556 None:intergenic 35.0%
GCACATGCATGTCAAAATTA+TGG + chr1_4:76450633-76450652 Msa0185730:CDS 35.0%
TAGCCTAGCGTAAAATTCAT+AGG + chr1_4:76450710-76450729 Msa0185730:intron 35.0%
! ATGCCTATGAATTTTACGCT+AGG - chr1_4:76450716-76450735 None:intergenic 35.0%
GAAAGTTGAAAATTGCGAGT+TGG + chr1_4:76450743-76450762 Msa0185730:intron 35.0%
TTATTGCACCATGAAGTTGT+AGG + chr1_4:76450959-76450978 Msa0185730:intron 35.0%
TATTGCACCATGAAGTTGTA+GGG + chr1_4:76450960-76450979 Msa0185730:intron 35.0%
AGACCGAGAAAGTTTCAAAT+TGG + chr1_4:76451195-76451214 Msa0185730:CDS 35.0%
! TTTTGTACCTGAAAGAAGGT+GGG - chr1_4:76451283-76451302 None:intergenic 35.0%
! TTTTTGTACCTGAAAGAAGG+TGG - chr1_4:76451284-76451303 None:intergenic 35.0%
AGTATAGCAGACAATTGAGA+AGG + chr1_4:76451543-76451562 Msa0185730:CDS 35.0%
GAGGCAATATCAGAAAGTTT+AGG + chr1_4:76451584-76451603 Msa0185730:CDS 35.0%
GATTACATAAACAACGCACT+TGG + chr1_4:76451617-76451636 Msa0185730:CDS 35.0%
TTGTTGCAAAATAATGTGGC+TGG + chr1_4:76451743-76451762 Msa0185730:CDS 35.0%
AAGTCCTTAAGGATGGTAAA+TGG + chr1_4:76451771-76451790 Msa0185730:CDS 35.0%
AGTCCTTAAGGATGGTAAAT+GGG + chr1_4:76451772-76451791 Msa0185730:CDS 35.0%
TTACCCATTTACCATCCTTA+AGG - chr1_4:76451778-76451797 None:intergenic 35.0%
!! ACTATGAAGGTATTAGGAAC+GGG - chr1_4:76451809-76451828 None:intergenic 35.0%
!! GACTATGAAGGTATTAGGAA+CGG - chr1_4:76451810-76451829 None:intergenic 35.0%
! GTCACCAATATTGACTATGA+AGG - chr1_4:76451822-76451841 None:intergenic 35.0%
! CAATATTGGTGACCAAATTC+AGG + chr1_4:76451829-76451848 Msa0185730:CDS 35.0%
CATGAACGTTACAGTTTACA+GGG - chr1_4:76451933-76451952 None:intergenic 35.0%
ACATGAACGTTACAGTTTAC+AGG - chr1_4:76451934-76451953 None:intergenic 35.0%
AATTTAACATCGGAACGGAA+AGG + chr1_4:76452066-76452085 Msa0185730:intron 35.0%
!! AACGGAAAGGTACTAATTTG+TGG + chr1_4:76452079-76452098 Msa0185730:intron 35.0%
!! ACGGAAAGGTACTAATTTGT+GGG + chr1_4:76452080-76452099 Msa0185730:intron 35.0%
TATATGCATGCATGTTGATG+TGG + chr1_4:76452201-76452220 Msa0185730:intron 35.0%
TGATCTTTGTCTATGAGTTG+AGG - chr1_4:76452358-76452377 None:intergenic 35.0%
!!! TTCATCTCCTTTTGAAGTGA+AGG + chr1_4:76452494-76452513 Msa0185730:three_prime_UTR 35.0%
ATTAAGGGTGGAAACAAGGT+CGG - chr1_4:76450475-76450494 None:intergenic 40.0%
CATGATTAAGGGTGGAAACA+AGG - chr1_4:76450479-76450498 None:intergenic 40.0%
ATGGTAGGGATAGAATCTGT+GGG - chr1_4:76450561-76450580 None:intergenic 40.0%
AATGGTAGGGATAGAATCTG+TGG - chr1_4:76450562-76450581 None:intergenic 40.0%
ATCCCTACCATTGATCTTCA+AGG + chr1_4:76450570-76450589 Msa0185730:CDS 40.0%
ATCAAGGCCTTGAAGATCAA+TGG - chr1_4:76450580-76450599 None:intergenic 40.0%
CTGAACGATTTGATGCATCA+AGG - chr1_4:76450596-76450615 None:intergenic 40.0%
! GACATGCATGTGCAATCTTT+TGG - chr1_4:76450626-76450645 None:intergenic 40.0%
ATTGCACCATGAAGTTGTAG+GGG + chr1_4:76450961-76450980 Msa0185730:intron 40.0%
TTAGATCCCCTACAACTTCA+TGG - chr1_4:76450970-76450989 None:intergenic 40.0%
GGTCTTCACATTGAAACTAG+TGG - chr1_4:76451180-76451199 None:intergenic 40.0%
!! CTATGAAGGTATTAGGAACG+GGG - chr1_4:76451808-76451827 None:intergenic 40.0%
AACGTTACAGTTTACAGGGA+CGG - chr1_4:76451929-76451948 None:intergenic 40.0%
TGTCAGCTGAGTCATGTTTA+CGG + chr1_4:76451951-76451970 Msa0185730:intron 40.0%
TGGTGAATAGTGAGAAAGAG+AGG + chr1_4:76452278-76452297 Msa0185730:CDS 40.0%
CTTATGATTGCATCTGGTGA+TGG - chr1_4:76452328-76452347 None:intergenic 40.0%
ACTTTCGAAAGAAACCTGTG+TGG + chr1_4:76452438-76452457 Msa0185730:CDS 40.0%
TCATGTGCCTTCACTTCAAA+AGG - chr1_4:76452504-76452523 None:intergenic 40.0%
ATTAAGGGTGGAAACAAGGT+CGG - chr1_4:76450475-76450494 None:intergenic 40.0%
CATGATTAAGGGTGGAAACA+AGG - chr1_4:76450479-76450498 None:intergenic 40.0%
ATGGTAGGGATAGAATCTGT+GGG - chr1_4:76450561-76450580 None:intergenic 40.0%
AATGGTAGGGATAGAATCTG+TGG - chr1_4:76450562-76450581 None:intergenic 40.0%
ATCCCTACCATTGATCTTCA+AGG + chr1_4:76450570-76450589 Msa0185730:CDS 40.0%
ATCAAGGCCTTGAAGATCAA+TGG - chr1_4:76450580-76450599 None:intergenic 40.0%
CTGAACGATTTGATGCATCA+AGG - chr1_4:76450596-76450615 None:intergenic 40.0%
! GACATGCATGTGCAATCTTT+TGG - chr1_4:76450626-76450645 None:intergenic 40.0%
ATTGCACCATGAAGTTGTAG+GGG + chr1_4:76450961-76450980 Msa0185730:intron 40.0%
TTAGATCCCCTACAACTTCA+TGG - chr1_4:76450970-76450989 None:intergenic 40.0%
GGTCTTCACATTGAAACTAG+TGG - chr1_4:76451180-76451199 None:intergenic 40.0%
!! CTATGAAGGTATTAGGAACG+GGG - chr1_4:76451808-76451827 None:intergenic 40.0%
AACGTTACAGTTTACAGGGA+CGG - chr1_4:76451929-76451948 None:intergenic 40.0%
TGTCAGCTGAGTCATGTTTA+CGG + chr1_4:76451951-76451970 Msa0185730:intron 40.0%
TGGTGAATAGTGAGAAAGAG+AGG + chr1_4:76452278-76452297 Msa0185730:CDS 40.0%
CTTATGATTGCATCTGGTGA+TGG - chr1_4:76452328-76452347 None:intergenic 40.0%
ACTTTCGAAAGAAACCTGTG+TGG + chr1_4:76452438-76452457 Msa0185730:CDS 40.0%
TCATGTGCCTTCACTTCAAA+AGG - chr1_4:76452504-76452523 None:intergenic 40.0%
GTGGCCATATTGGAGAATGA+AGG - chr1_4:76450435-76450454 None:intergenic 45.0%
TGGCTTCATTGTGGCCATAT+TGG - chr1_4:76450445-76450464 None:intergenic 45.0%
TATGGCCACAATGAAGCCAT+TGG + chr1_4:76450446-76450465 Msa0185730:exon 45.0%
GGTTACCAATGGCTTCATTG+TGG - chr1_4:76450454-76450473 None:intergenic 45.0%
GAAACAAGGTCGGTTACCAA+TGG - chr1_4:76450465-76450484 None:intergenic 45.0%
TGAAGGGACATGATTAAGGG+TGG - chr1_4:76450487-76450506 None:intergenic 45.0%
AGATCTGGACGATCACCAAT+GGG - chr1_4:76450522-76450541 None:intergenic 45.0%
AAGATCTGGACGATCACCAA+TGG - chr1_4:76450523-76450542 None:intergenic 45.0%
TGGTAGGGATAGAATCTGTG+GGG - chr1_4:76450560-76450579 None:intergenic 45.0%
GGCCTTGAAGATCAATGGTA+GGG - chr1_4:76450575-76450594 None:intergenic 45.0%
AGGCCTTGAAGATCAATGGT+AGG - chr1_4:76450576-76450595 None:intergenic 45.0%
TGTGAATCATGGAGTTCCAG+AGG + chr1_4:76451049-76451068 Msa0185730:CDS 45.0%
! GCTAGCATTGAGATTGCTTG+AGG + chr1_4:76451565-76451584 Msa0185730:CDS 45.0%
! TTAGGTCTGGTTCAGGACAT+GGG - chr1_4:76451679-76451698 None:intergenic 45.0%
! CCATATGTTAGGTCTGGTTC+AGG - chr1_4:76451686-76451705 None:intergenic 45.0%
CCTGAACCAGACCTAACATA+TGG + chr1_4:76451683-76451702 Msa0185730:CDS 45.0%
GGCAAACCATATGTTAGGTC+TGG - chr1_4:76451692-76451711 None:intergenic 45.0%
GAGCTGGCAAACCATATGTT+AGG - chr1_4:76451697-76451716 None:intergenic 45.0%
GGTTTGCAAGTCCTTAAGGA+TGG + chr1_4:76451764-76451783 Msa0185730:CDS 45.0%
TGGACAGTAGAACGTTGGAA+TGG - chr1_4:76452308-76452327 None:intergenic 45.0%
!! GCTGGTCTTATGATTGCATC+TGG - chr1_4:76452334-76452353 None:intergenic 45.0%
! TTGTCTATGAGTTGAGGAGC+TGG - chr1_4:76452352-76452371 None:intergenic 45.0%
AACCTGTGTGGACATGTTCA+AGG + chr1_4:76452450-76452469 Msa0185730:CDS 45.0%
AACCTTGAACATGTCCACAC+AGG - chr1_4:76452455-76452474 None:intergenic 45.0%
GTGGCCATATTGGAGAATGA+AGG - chr1_4:76450435-76450454 None:intergenic 45.0%
TGGCTTCATTGTGGCCATAT+TGG - chr1_4:76450445-76450464 None:intergenic 45.0%
TATGGCCACAATGAAGCCAT+TGG + chr1_4:76450446-76450465 Msa0185730:exon 45.0%
GGTTACCAATGGCTTCATTG+TGG - chr1_4:76450454-76450473 None:intergenic 45.0%
GAAACAAGGTCGGTTACCAA+TGG - chr1_4:76450465-76450484 None:intergenic 45.0%
TGAAGGGACATGATTAAGGG+TGG - chr1_4:76450487-76450506 None:intergenic 45.0%
AGATCTGGACGATCACCAAT+GGG - chr1_4:76450522-76450541 None:intergenic 45.0%
AAGATCTGGACGATCACCAA+TGG - chr1_4:76450523-76450542 None:intergenic 45.0%
TGGTAGGGATAGAATCTGTG+GGG - chr1_4:76450560-76450579 None:intergenic 45.0%
GGCCTTGAAGATCAATGGTA+GGG - chr1_4:76450575-76450594 None:intergenic 45.0%
AGGCCTTGAAGATCAATGGT+AGG - chr1_4:76450576-76450595 None:intergenic 45.0%
TGTGAATCATGGAGTTCCAG+AGG + chr1_4:76451049-76451068 Msa0185730:CDS 45.0%
! GCTAGCATTGAGATTGCTTG+AGG + chr1_4:76451565-76451584 Msa0185730:CDS 45.0%
! TTAGGTCTGGTTCAGGACAT+GGG - chr1_4:76451679-76451698 None:intergenic 45.0%
! CCATATGTTAGGTCTGGTTC+AGG - chr1_4:76451686-76451705 None:intergenic 45.0%
CCTGAACCAGACCTAACATA+TGG + chr1_4:76451683-76451702 Msa0185730:CDS 45.0%
GGCAAACCATATGTTAGGTC+TGG - chr1_4:76451692-76451711 None:intergenic 45.0%
GAGCTGGCAAACCATATGTT+AGG - chr1_4:76451697-76451716 None:intergenic 45.0%
GGTTTGCAAGTCCTTAAGGA+TGG + chr1_4:76451764-76451783 Msa0185730:CDS 45.0%
TGGACAGTAGAACGTTGGAA+TGG - chr1_4:76452308-76452327 None:intergenic 45.0%
!! GCTGGTCTTATGATTGCATC+TGG - chr1_4:76452334-76452353 None:intergenic 45.0%
! TTGTCTATGAGTTGAGGAGC+TGG - chr1_4:76452352-76452371 None:intergenic 45.0%
AACCTGTGTGGACATGTTCA+AGG + chr1_4:76452450-76452469 Msa0185730:CDS 45.0%
AACCTTGAACATGTCCACAC+AGG - chr1_4:76452455-76452474 None:intergenic 45.0%
!!! TTTTTTTTTTCTTTTAAAAT+AGG + chr1_4:76451884-76451903 Msa0185730:intron 5.0%
!!! TTTTTTTTTTCTTTTAAAAT+AGG + chr1_4:76451884-76451903 Msa0185730:intron 5.0%
GGTAGGGATAGAATCTGTGG+GGG - chr1_4:76450559-76450578 None:intergenic 50.0%
GAATCATGGAGTTCCAGAGG+AGG + chr1_4:76451052-76451071 Msa0185730:CDS 50.0%
GTACCTGAAAGAAGGTGGGT+TGG - chr1_4:76451279-76451298 None:intergenic 50.0%
AACAACGCACTTGGCAAGCA+TGG + chr1_4:76451626-76451645 Msa0185730:CDS 50.0%
ACAACGCACTTGGCAAGCAT+GGG + chr1_4:76451627-76451646 Msa0185730:CDS 50.0%
! TAGGTCTGGTTCAGGACATG+GGG - chr1_4:76451678-76451697 None:intergenic 50.0%
! GTTAGGTCTGGTTCAGGACA+TGG - chr1_4:76451680-76451699 None:intergenic 50.0%
ACATTTGGGTCAGCATGAGC+TGG - chr1_4:76451713-76451732 None:intergenic 50.0%
!! GGCTGGTTTGCAAGTCCTTA+AGG + chr1_4:76451760-76451779 Msa0185730:CDS 50.0%
GGGACGGCGTTCAATGAATA+TGG - chr1_4:76451913-76451932 None:intergenic 50.0%
!! GGTGATGGACAGTAGAACGT+TGG - chr1_4:76452313-76452332 None:intergenic 50.0%
GGTAGGGATAGAATCTGTGG+GGG - chr1_4:76450559-76450578 None:intergenic 50.0%
GAATCATGGAGTTCCAGAGG+AGG + chr1_4:76451052-76451071 Msa0185730:CDS 50.0%
GTACCTGAAAGAAGGTGGGT+TGG - chr1_4:76451279-76451298 None:intergenic 50.0%
AACAACGCACTTGGCAAGCA+TGG + chr1_4:76451626-76451645 Msa0185730:CDS 50.0%
ACAACGCACTTGGCAAGCAT+GGG + chr1_4:76451627-76451646 Msa0185730:CDS 50.0%
! TAGGTCTGGTTCAGGACATG+GGG - chr1_4:76451678-76451697 None:intergenic 50.0%
! GTTAGGTCTGGTTCAGGACA+TGG - chr1_4:76451680-76451699 None:intergenic 50.0%
ACATTTGGGTCAGCATGAGC+TGG - chr1_4:76451713-76451732 None:intergenic 50.0%
!! GGCTGGTTTGCAAGTCCTTA+AGG + chr1_4:76451760-76451779 Msa0185730:CDS 50.0%
GGGACGGCGTTCAATGAATA+TGG - chr1_4:76451913-76451932 None:intergenic 50.0%
!! GGTGATGGACAGTAGAACGT+TGG - chr1_4:76452313-76452332 None:intergenic 50.0%
!! CTGAAAGAAGGTGGGTTGGC+AGG - chr1_4:76451275-76451294 None:intergenic 55.0%
CTGCCAACCCACCTTCTTTC+AGG + chr1_4:76451273-76451292 Msa0185730:CDS 55.0%
TGGCAAGCATGGGCAACACA+TGG + chr1_4:76451637-76451656 Msa0185730:CDS 55.0%
! AGGTCTGGTTCAGGACATGG+GGG - chr1_4:76451677-76451696 None:intergenic 55.0%
GAGTGTGCTGCATCGAGCAT+TGG + chr1_4:76452258-76452277 Msa0185730:CDS 55.0%
!! CTGAAAGAAGGTGGGTTGGC+AGG - chr1_4:76451275-76451294 None:intergenic 55.0%
CTGCCAACCCACCTTCTTTC+AGG + chr1_4:76451273-76451292 Msa0185730:CDS 55.0%
TGGCAAGCATGGGCAACACA+TGG + chr1_4:76451637-76451656 Msa0185730:CDS 55.0%
! AGGTCTGGTTCAGGACATGG+GGG - chr1_4:76451677-76451696 None:intergenic 55.0%
GAGTGTGCTGCATCGAGCAT+TGG + chr1_4:76452258-76452277 Msa0185730:CDS 55.0%
! GGTCTGGTTCAGGACATGGG+GGG - chr1_4:76451676-76451695 None:intergenic 60.0%
! GGTCTGGTTCAGGACATGGG+GGG - chr1_4:76451676-76451695 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 76450431 76452639 76450431 ID=Msa0185730;Name=Msa0185730
chr1_4 mRNA 76450431 76452639 76450431 ID=Msa0185730-mRNA-1;Parent=Msa0185730;Name=Msa0185730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=16|1|1|1|1|1|4|162|343
chr1_4 exon 76450431 76450665 76450431 ID=Msa0185730-mRNA-1:exon:25957;Parent=Msa0185730-mRNA-1
chr1_4 exon 76451047 76451294 76451047 ID=Msa0185730-mRNA-1:exon:25958;Parent=Msa0185730-mRNA-1
chr1_4 exon 76451529 76451850 76451529 ID=Msa0185730-mRNA-1:exon:25959;Parent=Msa0185730-mRNA-1
chr1_4 exon 76452235 76452639 76452235 ID=Msa0185730-mRNA-1:exon:25960;Parent=Msa0185730-mRNA-1
chr1_4 five_prime_UTR 76450431 76450446 76450431 ID=Msa0185730-mRNA-1:five_prime_utr;Parent=Msa0185730-mRNA-1
chr1_4 CDS 76450447 76450665 76450447 ID=Msa0185730-mRNA-1:cds;Parent=Msa0185730-mRNA-1
chr1_4 CDS 76451047 76451294 76451047 ID=Msa0185730-mRNA-1:cds;Parent=Msa0185730-mRNA-1
chr1_4 CDS 76451529 76451850 76451529 ID=Msa0185730-mRNA-1:cds;Parent=Msa0185730-mRNA-1
chr1_4 CDS 76452235 76452477 76452235 ID=Msa0185730-mRNA-1:cds;Parent=Msa0185730-mRNA-1
chr1_4 three_prime_UTR 76452478 76452639 76452478 ID=Msa0185730-mRNA-1:three_prime_utr;Parent=Msa0185730-mRNA-1
Gene Sequence

>Msa0185730

ATGGCCACAATGAAGCCATTGGTAACCGACCTTGTTTCCACCCTTAATCATGTCCCTTCAAATTTCATTAGACCCATTGGTGATCGTCCAGATCTTCAACTTCAATTCACCCCCACAGATTCTATCCCTACCATTGATCTTCAAGGCCTTGATGCATCAAATCGTTCAGAAATCATCCAAAAGATTGCACATGCATGTCAAAATTATGGCTTTTTTCAAATTGTGAATCATGGAGTTCCAGAGGAGGTTATAAATAACATGATGAATGTGTCAAAAGAATTCTTCAATTTACCAGAAAGTGAAAGAATGAAAAATTACTCAGATGATCCATTAAAGACAACTAGACTTTCCACTAGTTTCAATGTGAAGACCGAGAAAGTTTCAAATTGGAGAGACTACTTGAGACTTCATTGTCATCCTCTTGAAGATTATGTTCATGAATGGCCTGCCAACCCACCTTCTTTCAGAGAGGATGTAGCAGAGTATAGCAGACAATTGAGAAGGCTAGCATTGAGATTGCTTGAGGCAATATCAGAAAGTTTAGGTTTGGAAAAGGATTACATAAACAACGCACTTGGCAAGCATGGGCAACACATGGCTATTAACTACTACCCCCCATGTCCTGAACCAGACCTAACATATGGTTTGCCAGCTCATGCTGACCCAAATGTCATTACCATTTTGTTGCAAAATAATGTGGCTGGTTTGCAAGTCCTTAAGGATGGTAAATGGGTAACTATTAACCCCGTTCCTAATACCTTCATAGTCAATATTGGTGACCAAATTCAGGTGATAAGCAATGATAGATACAAGAGTGTGCTGCATCGAGCATTGGTGAATAGTGAGAAAGAGAGGATGTCCATTCCAACGTTCTACTGTCCATCACCAGATGCAATCATAAGACCAGCTCCTCAACTCATAGACAAAGATCATACTGTTCAATACAAAGAGTTTCAATACAATGAATACTACAACAAATTCTGGAATAGAGGACTTTCGAAAGAAACCTGTGTGGACATGTTCAAGGTTTAG
Protein sequence

>Msa0185730

MATMKPLVTDLVSTLNHVPSNFIRPIGDRPDLQLQFTPTDSIPTIDLQGLDASNRSEIIQKIAHACQNYGFFQIVNHGVPEEVINNMMNVSKEFFNLPESERMKNYSDDPLKTTRLSTSFNVKTEKVSNWRDYLRLHCHPLEDYVHEWPANPPSFREDVAEYSRQLRRLALRLLEAISESLGLEKDYINNALGKHGQHMAINYYPPCPEPDLTYGLPAHADPNVITILLQNNVAGLQVLKDGKWVTINPVPNTFIVNIGDQIQVISNDRYKSVLHRALVNSEKERMSIPTFYCPSPDAIIRPAPQLIDKDHTVQYKEFQYNEYYNKFWNRGLSKETCVDMFKV*