Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200420 | XP_003629040.1 | 93.258 | 178 | 11 | 1 | 1 | 177 | 1 | 178 | 7.87e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035150 | Msa1200420 | 0.814413 | 1.560509e-51 | -8.615850e-47 |
| Msa0058510 | Msa1200420 | 0.804656 | 1.945148e-49 | -8.615850e-47 |
| Msa0075170 | Msa1200420 | 0.809128 | 2.205374e-50 | -8.615850e-47 |
| Msa0626220 | Msa1200420 | 0.804661 | 1.941023e-49 | -8.615850e-47 |
| Msa0640230 | Msa1200420 | 0.830233 | 3.295273e-55 | -8.615850e-47 |
| Msa0679110 | Msa1200420 | 0.842161 | 3.061283e-58 | -8.615850e-47 |
| Msa0740640 | Msa1200420 | 0.815155 | 1.068759e-51 | -8.615850e-47 |
| Msa0127800 | Msa1200420 | 0.805306 | 1.422850e-49 | -8.615850e-47 |
| Msa0131770 | Msa1200420 | 0.803724 | 3.041297e-49 | -8.615850e-47 |
| Msa0169860 | Msa1200420 | 0.821294 | 4.359404e-53 | -8.615850e-47 |
| Msa0185730 | Msa1200420 | 0.822338 | 2.499222e-53 | -8.615850e-47 |
| Msa0197100 | Msa1200420 | 0.829094 | 6.236868e-55 | -8.615850e-47 |
| Msa0213040 | Msa1200420 | 0.807417 | 5.105572e-50 | -8.615850e-47 |
| Msa0453520 | Msa1200420 | 0.801539 | 8.583493e-49 | -8.615850e-47 |
| Msa1010840 | Msa1200420 | 0.803512 | 3.365123e-49 | -8.615850e-47 |
| Msa1037910 | Msa1200420 | 0.806676 | 7.326582e-50 | -8.615850e-47 |
| Msa1052360 | Msa1200420 | 0.816214 | 6.205586e-52 | -8.615850e-47 |
| Msa1096210 | Msa1200420 | 0.821704 | 3.505045e-53 | -8.615850e-47 |
| Msa0239030 | Msa1200420 | 0.846832 | 1.695424e-59 | -8.615850e-47 |
| Msa0253340 | Msa1200420 | 0.800098 | 1.689855e-48 | -8.615850e-47 |
| Msa0276740 | Msa1200420 | 0.843267 | 1.556809e-58 | -8.615850e-47 |
| Msa0316680 | Msa1200420 | 0.841111 | 5.792641e-58 | -8.615850e-47 |
| Msa0317510 | Msa1200420 | 0.804526 | 2.070750e-49 | -8.615850e-47 |
| Msa1137570 | Msa1200420 | 0.809591 | 1.754009e-50 | -8.615850e-47 |
| Msa1140640 | Msa1200420 | 0.817804 | 2.726843e-52 | -8.615850e-47 |
| Msa1175660 | Msa1200420 | 0.821441 | 4.031051e-53 | -8.615850e-47 |
| Msa1193290 | Msa1200420 | 0.822600 | 2.172346e-53 | -8.615850e-47 |
| Msa1200420 | Msa1213140 | 0.805393 | 1.363962e-49 | -8.615850e-47 |
| Msa1200420 | Msa1220870 | 0.802341 | 5.873828e-49 | -8.615850e-47 |
| Msa1200420 | Msa1253430 | 0.872573 | 2.866131e-67 | -8.615850e-47 |
| Msa1200420 | Msa1253450 | 0.906344 | 1.641064e-80 | -8.615850e-47 |
| Msa1200420 | Msa1293750 | 0.923012 | 4.646506e-89 | -8.615850e-47 |
| Msa1200420 | Msa1353470 | 0.807720 | 4.404725e-50 | -8.615850e-47 |
| Msa0491250 | Msa1200420 | 0.820652 | 6.124443e-53 | -8.615850e-47 |
| Msa0523460 | Msa1200420 | 0.814707 | 1.343342e-51 | -8.615850e-47 |
| Msa0537360 | Msa1200420 | 0.807008 | 6.233797e-50 | -8.615850e-47 |
| Msa0543780 | Msa1200420 | 0.835605 | 1.522490e-56 | -8.615850e-47 |
| Msa0599540 | Msa1200420 | 0.844357 | 7.950420e-59 | -8.615850e-47 |
| Msa0842650 | Msa1200420 | 0.803327 | 3.675818e-49 | -8.615850e-47 |
| Msa0903070 | Msa1200420 | 0.814169 | 1.766477e-51 | -8.615850e-47 |
| Msa0964840 | Msa1200420 | 0.801978 | 6.975055e-49 | -8.615850e-47 |
| Msa0967380 | Msa1200420 | 0.812642 | 3.825829e-51 | -8.615850e-47 |
| Msa0969200 | Msa1200420 | 0.808080 | 3.692606e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200420 | MtrunA17_Chr8g0369901 | 93.258 | 178 | 11 | 1 | 1 | 177 | 1 | 178 | 7.24e-97 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTCAAGTGGTTGAAAT+TGG | 0.249117 | 8_1:+53053958 | Msa1200420:CDS |
| TATATTAAGTATTGGTTTCA+TGG | 0.253486 | 8_1:+53054126 | Msa1200420:three_prime_UTR |
| GCTAGAAAATCGAGTAATTC+AGG | 0.254707 | 8_1:+53052667 | Msa1200420:CDS |
| ATTGGATCGTCTTGAGCTTC+TGG | 0.310419 | 8_1:+53052361 | Msa1200420:CDS |
| ATTGGATGCAAATGAGAATA+TGG | 0.320746 | 8_1:+53053709 | Msa1200420:CDS |
| ATAGCTGGAAAGCTAGAAAA+AGG | 0.330571 | 8_1:+53053677 | Msa1200420:CDS |
| CATTAAACTCACCATCTTGC+AGG | 0.336387 | 8_1:+53053891 | Msa1200420:CDS |
| TGTTGCCATTCACAAATGTT+TGG | 0.407820 | 8_1:+53052562 | Msa1200420:CDS |
| TGCAAATGAGAATATGGATA+TGG | 0.412766 | 8_1:+53053715 | Msa1200420:CDS |
| TCAATTAATATATTAAGTAT+TGG | 0.421087 | 8_1:+53054118 | Msa1200420:three_prime_UTR |
| TGTCTAGGATGGGTTACAAT+AGG | 0.445380 | 8_1:+53053933 | Msa1200420:CDS |
| TTGTTCCAAACATTTGTGAA+TGG | 0.448955 | 8_1:-53052567 | None:intergenic |
| GGATGGGTTACAATAGGAAA+TGG | 0.471461 | 8_1:+53053939 | Msa1200420:CDS |
| AATCAAAACAATGTCTAGGA+TGG | 0.474453 | 8_1:+53053922 | Msa1200420:CDS |
| TCTTCCACATCTATAATAGC+TGG | 0.475039 | 8_1:+53053662 | Msa1200420:CDS |
| GTAGGATAGCATTGTTGTGG+AGG | 0.497964 | 8_1:+53053862 | Msa1200420:intron |
| TCTTCAGCTGAGTATTGACT+TGG | 0.499669 | 8_1:+53053613 | Msa1200420:intron |
| TGGCTCAAGTGGTTGAAATT+GGG | 0.515752 | 8_1:+53053959 | Msa1200420:CDS |
| CTTGTCGATTCTCCAACGAT+TGG | 0.532394 | 8_1:+53052343 | Msa1200420:CDS |
| CTGAGTATTGACTTGGACAT+GGG | 0.547034 | 8_1:+53053620 | Msa1200420:CDS |
| ATAGAATCAAAACAATGTCT+AGG | 0.551365 | 8_1:+53053918 | Msa1200420:CDS |
| CTTTCCAGCTATTATAGATG+TGG | 0.555271 | 8_1:-53053666 | None:intergenic |
| ATCAAAACAATGTCTAGGAT+GGG | 0.566242 | 8_1:+53053923 | Msa1200420:CDS |
| ACAATAGGAAATGGCTCAAG+TGG | 0.569194 | 8_1:+53053948 | Msa1200420:CDS |
| GCTCAAGACGATCCAATCGT+TGG | 0.572417 | 8_1:-53052355 | None:intergenic |
| ATTAAACTCACCATCTTGCA+GGG | 0.587021 | 8_1:+53053892 | Msa1200420:CDS |
| AAAGTTACTTGTGTTATGAG+AGG | 0.587359 | 8_1:-53053764 | None:intergenic |
| TTTGAAGAGGTTCACAACAA+AGG | 0.591126 | 8_1:+53052620 | Msa1200420:CDS |
| ATTCTATGTGCCCTGCAAGA+TGG | 0.593541 | 8_1:-53053902 | None:intergenic |
| GCTGAGTATTGACTTGGACA+TGG | 0.601595 | 8_1:+53053619 | Msa1200420:intron |
| CAATCGTTGGAGAATCGACA+AGG | 0.612069 | 8_1:-53052342 | None:intergenic |
| CTTGTAGGATAGCATTGTTG+TGG | 0.638221 | 8_1:+53053859 | Msa1200420:intron |
| TGGACATGGGAAACACATCA+AGG | 0.640707 | 8_1:+53053633 | Msa1200420:CDS |
| AACAAGAACAACAATGCAAG+AGG | 0.640851 | 8_1:+53052585 | Msa1200420:CDS |
| TAGATGAATAATATTTACGT+AGG | 0.649252 | 8_1:+53053989 | Msa1200420:three_prime_UTR |
| AATCGTTGGAGAATCGACAA+GGG | 0.726740 | 8_1:-53052341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTAATATATTAAGTAT+TGG | + | chr8_1:53054118-53054137 | Msa1200420:three_prime_UTR | 10.0% |
| !! | TCAATTAATATATTAAGTAT+TGG | + | chr8_1:53054118-53054137 | Msa1200420:three_prime_UTR | 10.0% |
| !!! | TAATAATATCGATTTTACAT+CGG | - | chr8_1:53052894-53052913 | None:intergenic | 15.0% |
| !!! | AAGGATTTTTAACAAAATTA+AGG | - | chr8_1:53053311-53053330 | None:intergenic | 15.0% |
| !!! | TCCATATAATTTTTTACTAA+TGG | + | chr8_1:53053823-53053842 | Msa1200420:intron | 15.0% |
| !! | ACCATTAGTAAAAAATTATA+TGG | - | chr8_1:53053827-53053846 | None:intergenic | 15.0% |
| !!! | TTTTCAATAGTTAATTGTTT+AGG | + | chr8_1:53054091-53054110 | Msa1200420:three_prime_UTR | 15.0% |
| !!! | TAATAATATCGATTTTACAT+CGG | - | chr8_1:53052894-53052913 | None:intergenic | 15.0% |
| !!! | AAGGATTTTTAACAAAATTA+AGG | - | chr8_1:53053311-53053330 | None:intergenic | 15.0% |
| !!! | TCCATATAATTTTTTACTAA+TGG | + | chr8_1:53053823-53053842 | Msa1200420:intron | 15.0% |
| !! | ACCATTAGTAAAAAATTATA+TGG | - | chr8_1:53053827-53053846 | None:intergenic | 15.0% |
| !!! | TTTTCAATAGTTAATTGTTT+AGG | + | chr8_1:53054091-53054110 | Msa1200420:three_prime_UTR | 15.0% |
| !! | TTATGTTAAGATCCATATAA+TGG | + | chr8_1:53052463-53052482 | Msa1200420:intron | 20.0% |
| !! | GTTAATTAATGACCATTATA+TGG | - | chr8_1:53052478-53052497 | None:intergenic | 20.0% |
| !!! | TCTGTTTGTATAGATTTTTT+GGG | - | chr8_1:53053062-53053081 | None:intergenic | 20.0% |
| !!! | TTTTAACAAAATTAAGGATG+TGG | - | chr8_1:53053305-53053324 | None:intergenic | 20.0% |
| !!! | TGAATTTTTATCTCTAACAT+GGG | - | chr8_1:53053508-53053527 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATCTCTAACA+TGG | - | chr8_1:53053509-53053528 | None:intergenic | 20.0% |
| !! | TAGATGAATAATATTTACGT+AGG | + | chr8_1:53053989-53054008 | Msa1200420:three_prime_UTR | 20.0% |
| !!! | TATATTAAGTATTGGTTTCA+TGG | + | chr8_1:53054126-53054145 | Msa1200420:three_prime_UTR | 20.0% |
| !!! | TTCATGGATTAAATTGTTTT+TGG | + | chr8_1:53054142-53054161 | Msa1200420:three_prime_UTR | 20.0% |
| !! | TTATGTTAAGATCCATATAA+TGG | + | chr8_1:53052463-53052482 | Msa1200420:intron | 20.0% |
| !! | GTTAATTAATGACCATTATA+TGG | - | chr8_1:53052478-53052497 | None:intergenic | 20.0% |
| !!! | TCTGTTTGTATAGATTTTTT+GGG | - | chr8_1:53053062-53053081 | None:intergenic | 20.0% |
| !!! | TTTTAACAAAATTAAGGATG+TGG | - | chr8_1:53053305-53053324 | None:intergenic | 20.0% |
| !!! | TGAATTTTTATCTCTAACAT+GGG | - | chr8_1:53053508-53053527 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATCTCTAACA+TGG | - | chr8_1:53053509-53053528 | None:intergenic | 20.0% |
| !! | TAGATGAATAATATTTACGT+AGG | + | chr8_1:53053989-53054008 | Msa1200420:three_prime_UTR | 20.0% |
| !!! | TATATTAAGTATTGGTTTCA+TGG | + | chr8_1:53054126-53054145 | Msa1200420:three_prime_UTR | 20.0% |
| !!! | TTCATGGATTAAATTGTTTT+TGG | + | chr8_1:53054142-53054161 | Msa1200420:three_prime_UTR | 20.0% |
| !!! | AAAAATGTGTACTTTTTTGG+AGG | - | chr8_1:53052853-53052872 | None:intergenic | 25.0% |
| !!! | CTGAAAAATGTGTACTTTTT+TGG | - | chr8_1:53052856-53052875 | None:intergenic | 25.0% |
| !!! | AAAAGTACACATTTTTCAGA+AGG | + | chr8_1:53052857-53052876 | Msa1200420:intron | 25.0% |
| !!! | TGTATAGATTTTTTGGGTTT+TGG | - | chr8_1:53053056-53053075 | None:intergenic | 25.0% |
| !!! | GTCTGTTTGTATAGATTTTT+TGG | - | chr8_1:53053063-53053082 | None:intergenic | 25.0% |
| ! | TATATATCACTTTGTGCTTA+TGG | - | chr8_1:53053553-53053572 | None:intergenic | 25.0% |
| !!! | TTATATGGAAGTGTACTTTT+GGG | - | chr8_1:53053812-53053831 | None:intergenic | 25.0% |
| !!! | ATTATATGGAAGTGTACTTT+TGG | - | chr8_1:53053813-53053832 | None:intergenic | 25.0% |
| ! | ATAGAATCAAAACAATGTCT+AGG | + | chr8_1:53053918-53053937 | Msa1200420:CDS | 25.0% |
| ! | CTATTGAAAAATATTGATCG+AGG | - | chr8_1:53054081-53054100 | None:intergenic | 25.0% |
| !!! | AAAAATGTGTACTTTTTTGG+AGG | - | chr8_1:53052853-53052872 | None:intergenic | 25.0% |
| !!! | CTGAAAAATGTGTACTTTTT+TGG | - | chr8_1:53052856-53052875 | None:intergenic | 25.0% |
| !!! | AAAAGTACACATTTTTCAGA+AGG | + | chr8_1:53052857-53052876 | Msa1200420:intron | 25.0% |
| !!! | TGTATAGATTTTTTGGGTTT+TGG | - | chr8_1:53053056-53053075 | None:intergenic | 25.0% |
| !!! | GTCTGTTTGTATAGATTTTT+TGG | - | chr8_1:53053063-53053082 | None:intergenic | 25.0% |
| ! | TATATATCACTTTGTGCTTA+TGG | - | chr8_1:53053553-53053572 | None:intergenic | 25.0% |
| !!! | TTATATGGAAGTGTACTTTT+GGG | - | chr8_1:53053812-53053831 | None:intergenic | 25.0% |
| !!! | ATTATATGGAAGTGTACTTT+TGG | - | chr8_1:53053813-53053832 | None:intergenic | 25.0% |
| ! | ATAGAATCAAAACAATGTCT+AGG | + | chr8_1:53053918-53053937 | Msa1200420:CDS | 25.0% |
| ! | CTATTGAAAAATATTGATCG+AGG | - | chr8_1:53054081-53054100 | None:intergenic | 25.0% |
| TTGTTCCAAACATTTGTGAA+TGG | - | chr8_1:53052570-53052589 | None:intergenic | 30.0% | |
| ! | ATGTGTCGGTAAAAAACATA+AGG | + | chr8_1:53052805-53052824 | Msa1200420:intron | 30.0% |
| !!! | TAATATCGATTTTACATCGG+AGG | - | chr8_1:53052891-53052910 | None:intergenic | 30.0% |
| ! | TGATTTTGTTACAGTATGCA+TGG | - | chr8_1:53052978-53052997 | None:intergenic | 30.0% |
| ATGCAGAAAAATACAGCAAA+AGG | + | chr8_1:53053015-53053034 | Msa1200420:intron | 30.0% | |
| !!! | TGTTTTTTGGATCTGCTTAA+GGG | - | chr8_1:53053153-53053172 | None:intergenic | 30.0% |
| GTGCCTAAATAAAAGATGAA+CGG | - | chr8_1:53053179-53053198 | None:intergenic | 30.0% | |
| TAACAAAATTAAGGATGTGG+AGG | - | chr8_1:53053302-53053321 | None:intergenic | 30.0% | |
| !!! | AGAAAGGTTTTTGGTTGATT+TGG | - | chr8_1:53053372-53053391 | None:intergenic | 30.0% |
| ! | ATATTGAAGTGCTCTCTATA+AGG | - | chr8_1:53053399-53053418 | None:intergenic | 30.0% |
| ATTGGATGCAAATGAGAATA+TGG | + | chr8_1:53053709-53053728 | Msa1200420:CDS | 30.0% | |
| TGCAAATGAGAATATGGATA+TGG | + | chr8_1:53053715-53053734 | Msa1200420:CDS | 30.0% | |
| AAAGTTACTTGTGTTATGAG+AGG | - | chr8_1:53053767-53053786 | None:intergenic | 30.0% | |
| AATCAAAACAATGTCTAGGA+TGG | + | chr8_1:53053922-53053941 | Msa1200420:CDS | 30.0% | |
| ! | ATCAAAACAATGTCTAGGAT+GGG | + | chr8_1:53053923-53053942 | Msa1200420:CDS | 30.0% |
| TTGTTCCAAACATTTGTGAA+TGG | - | chr8_1:53052570-53052589 | None:intergenic | 30.0% | |
| ! | ATGTGTCGGTAAAAAACATA+AGG | + | chr8_1:53052805-53052824 | Msa1200420:intron | 30.0% |
| !!! | TAATATCGATTTTACATCGG+AGG | - | chr8_1:53052891-53052910 | None:intergenic | 30.0% |
| ! | TGATTTTGTTACAGTATGCA+TGG | - | chr8_1:53052978-53052997 | None:intergenic | 30.0% |
| ATGCAGAAAAATACAGCAAA+AGG | + | chr8_1:53053015-53053034 | Msa1200420:intron | 30.0% | |
| !!! | TGTTTTTTGGATCTGCTTAA+GGG | - | chr8_1:53053153-53053172 | None:intergenic | 30.0% |
| GTGCCTAAATAAAAGATGAA+CGG | - | chr8_1:53053179-53053198 | None:intergenic | 30.0% | |
| TAACAAAATTAAGGATGTGG+AGG | - | chr8_1:53053302-53053321 | None:intergenic | 30.0% | |
| !!! | AGAAAGGTTTTTGGTTGATT+TGG | - | chr8_1:53053372-53053391 | None:intergenic | 30.0% |
| ! | ATATTGAAGTGCTCTCTATA+AGG | - | chr8_1:53053399-53053418 | None:intergenic | 30.0% |
| ATTGGATGCAAATGAGAATA+TGG | + | chr8_1:53053709-53053728 | Msa1200420:CDS | 30.0% | |
| TGCAAATGAGAATATGGATA+TGG | + | chr8_1:53053715-53053734 | Msa1200420:CDS | 30.0% | |
| AAAGTTACTTGTGTTATGAG+AGG | - | chr8_1:53053767-53053786 | None:intergenic | 30.0% | |
| AATCAAAACAATGTCTAGGA+TGG | + | chr8_1:53053922-53053941 | Msa1200420:CDS | 30.0% | |
| ! | ATCAAAACAATGTCTAGGAT+GGG | + | chr8_1:53053923-53053942 | Msa1200420:CDS | 30.0% |
| GAAACAGTAGCTGCATTATT+AGG | - | chr8_1:53052502-53052521 | None:intergenic | 35.0% | |
| TGTTGCCATTCACAAATGTT+TGG | + | chr8_1:53052562-53052581 | Msa1200420:CDS | 35.0% | |
| AACAAGAACAACAATGCAAG+AGG | + | chr8_1:53052585-53052604 | Msa1200420:CDS | 35.0% | |
| !! | GTTGTCCTATGTTTTTGAAG+AGG | + | chr8_1:53052607-53052626 | Msa1200420:CDS | 35.0% |
| GTGAACCTCTTCAAAAACAT+AGG | - | chr8_1:53052615-53052634 | None:intergenic | 35.0% | |
| TTTGAAGAGGTTCACAACAA+AGG | + | chr8_1:53052620-53052639 | Msa1200420:CDS | 35.0% | |
| GCTAGAAAATCGAGTAATTC+AGG | + | chr8_1:53052667-53052686 | Msa1200420:CDS | 35.0% | |
| CAGACACAATGATATGTAGA+CGG | - | chr8_1:53052753-53052772 | None:intergenic | 35.0% | |
| ATTGTGTCTGCCAAAACATA+AGG | + | chr8_1:53052763-53052782 | Msa1200420:intron | 35.0% | |
| GACACATGAAACAAGAGTTT+CGG | - | chr8_1:53052792-53052811 | None:intergenic | 35.0% | |
| ! | GAAACTCTTGTTTCATGTGT+CGG | + | chr8_1:53052791-53052810 | Msa1200420:intron | 35.0% |
| TGTCGGTAAAAAACATAAGG+CGG | + | chr8_1:53052808-53052827 | Msa1200420:intron | 35.0% | |
| ! | ATTTTACATCGGAGGCTTAA+AGG | - | chr8_1:53052883-53052902 | None:intergenic | 35.0% |
| AACAAAATCAGCAGCAACTA+AGG | + | chr8_1:53052988-53053007 | Msa1200420:intron | 35.0% | |
| ! | TGTTTTGCTTCTTCGGTTTT+AGG | - | chr8_1:53053090-53053109 | None:intergenic | 35.0% |
| !!! | GTTTTTTGGATCTGCTTAAG+GGG | - | chr8_1:53053152-53053171 | None:intergenic | 35.0% |
| !!! | CTGTTTTTTGGATCTGCTTA+AGG | - | chr8_1:53053154-53053173 | None:intergenic | 35.0% |
| !! | GCACCGTTCATCTTTTATTT+AGG | + | chr8_1:53053173-53053192 | Msa1200420:intron | 35.0% |
| !! | CTTTTATTTAGGCACTCTCT+AGG | + | chr8_1:53053184-53053203 | Msa1200420:intron | 35.0% |
| CGAGATTAAAGTGGTTTCTT+GGG | - | chr8_1:53053269-53053288 | None:intergenic | 35.0% | |
| ACGAGATTAAAGTGGTTTCT+TGG | - | chr8_1:53053270-53053289 | None:intergenic | 35.0% | |
| !! | GACAATATGATCGATTTGGA+AGG | - | chr8_1:53053344-53053363 | None:intergenic | 35.0% |
| ATGCGACAATATGATCGATT+TGG | - | chr8_1:53053348-53053367 | None:intergenic | 35.0% | |
| ! | TAAGGCATGAGAAAGGTTTT+TGG | - | chr8_1:53053381-53053400 | None:intergenic | 35.0% |
| TGTTTGCGCAATTTGAATGT+TGG | - | chr8_1:53053423-53053442 | None:intergenic | 35.0% | |
| TGCTTATGGAACTTAGGATA+TGG | - | chr8_1:53053539-53053558 | None:intergenic | 35.0% | |
| ACTTTGTGCTTATGGAACTT+AGG | - | chr8_1:53053545-53053564 | None:intergenic | 35.0% | |
| TCTTCCACATCTATAATAGC+TGG | + | chr8_1:53053662-53053681 | Msa1200420:CDS | 35.0% | |
| CTTTCCAGCTATTATAGATG+TGG | - | chr8_1:53053669-53053688 | None:intergenic | 35.0% | |
| ATAGCTGGAAAGCTAGAAAA+AGG | + | chr8_1:53053677-53053696 | Msa1200420:CDS | 35.0% | |
| AGAAAAAGGATCAGGATCAT+TGG | + | chr8_1:53053691-53053710 | Msa1200420:CDS | 35.0% | |
| ATTAAACTCACCATCTTGCA+GGG | + | chr8_1:53053892-53053911 | Msa1200420:CDS | 35.0% | |
| GAAACAGTAGCTGCATTATT+AGG | - | chr8_1:53052502-53052521 | None:intergenic | 35.0% | |
| TGTTGCCATTCACAAATGTT+TGG | + | chr8_1:53052562-53052581 | Msa1200420:CDS | 35.0% | |
| AACAAGAACAACAATGCAAG+AGG | + | chr8_1:53052585-53052604 | Msa1200420:CDS | 35.0% | |
| !! | GTTGTCCTATGTTTTTGAAG+AGG | + | chr8_1:53052607-53052626 | Msa1200420:CDS | 35.0% |
| GTGAACCTCTTCAAAAACAT+AGG | - | chr8_1:53052615-53052634 | None:intergenic | 35.0% | |
| TTTGAAGAGGTTCACAACAA+AGG | + | chr8_1:53052620-53052639 | Msa1200420:CDS | 35.0% | |
| GCTAGAAAATCGAGTAATTC+AGG | + | chr8_1:53052667-53052686 | Msa1200420:CDS | 35.0% | |
| CAGACACAATGATATGTAGA+CGG | - | chr8_1:53052753-53052772 | None:intergenic | 35.0% | |
| ATTGTGTCTGCCAAAACATA+AGG | + | chr8_1:53052763-53052782 | Msa1200420:intron | 35.0% | |
| GACACATGAAACAAGAGTTT+CGG | - | chr8_1:53052792-53052811 | None:intergenic | 35.0% | |
| ! | GAAACTCTTGTTTCATGTGT+CGG | + | chr8_1:53052791-53052810 | Msa1200420:intron | 35.0% |
| TGTCGGTAAAAAACATAAGG+CGG | + | chr8_1:53052808-53052827 | Msa1200420:intron | 35.0% | |
| ! | ATTTTACATCGGAGGCTTAA+AGG | - | chr8_1:53052883-53052902 | None:intergenic | 35.0% |
| AACAAAATCAGCAGCAACTA+AGG | + | chr8_1:53052988-53053007 | Msa1200420:intron | 35.0% | |
| ! | TGTTTTGCTTCTTCGGTTTT+AGG | - | chr8_1:53053090-53053109 | None:intergenic | 35.0% |
| !!! | GTTTTTTGGATCTGCTTAAG+GGG | - | chr8_1:53053152-53053171 | None:intergenic | 35.0% |
| !!! | CTGTTTTTTGGATCTGCTTA+AGG | - | chr8_1:53053154-53053173 | None:intergenic | 35.0% |
| !! | GCACCGTTCATCTTTTATTT+AGG | + | chr8_1:53053173-53053192 | Msa1200420:intron | 35.0% |
| !! | CTTTTATTTAGGCACTCTCT+AGG | + | chr8_1:53053184-53053203 | Msa1200420:intron | 35.0% |
| CGAGATTAAAGTGGTTTCTT+GGG | - | chr8_1:53053269-53053288 | None:intergenic | 35.0% | |
| ACGAGATTAAAGTGGTTTCT+TGG | - | chr8_1:53053270-53053289 | None:intergenic | 35.0% | |
| !! | GACAATATGATCGATTTGGA+AGG | - | chr8_1:53053344-53053363 | None:intergenic | 35.0% |
| ATGCGACAATATGATCGATT+TGG | - | chr8_1:53053348-53053367 | None:intergenic | 35.0% | |
| ! | TAAGGCATGAGAAAGGTTTT+TGG | - | chr8_1:53053381-53053400 | None:intergenic | 35.0% |
| TGTTTGCGCAATTTGAATGT+TGG | - | chr8_1:53053423-53053442 | None:intergenic | 35.0% | |
| TGCTTATGGAACTTAGGATA+TGG | - | chr8_1:53053539-53053558 | None:intergenic | 35.0% | |
| ACTTTGTGCTTATGGAACTT+AGG | - | chr8_1:53053545-53053564 | None:intergenic | 35.0% | |
| TCTTCCACATCTATAATAGC+TGG | + | chr8_1:53053662-53053681 | Msa1200420:CDS | 35.0% | |
| CTTTCCAGCTATTATAGATG+TGG | - | chr8_1:53053669-53053688 | None:intergenic | 35.0% | |
| ATAGCTGGAAAGCTAGAAAA+AGG | + | chr8_1:53053677-53053696 | Msa1200420:CDS | 35.0% | |
| AGAAAAAGGATCAGGATCAT+TGG | + | chr8_1:53053691-53053710 | Msa1200420:CDS | 35.0% | |
| ATTAAACTCACCATCTTGCA+GGG | + | chr8_1:53053892-53053911 | Msa1200420:CDS | 35.0% | |
| AATCGTTGGAGAATCGACAA+GGG | - | chr8_1:53052344-53052363 | None:intergenic | 40.0% | |
| ! | GGAGGTGTAAAACAAGAGTT+TGG | - | chr8_1:53052835-53052854 | None:intergenic | 40.0% |
| !!! | TTTTTGGGTTTTGGTGCTGT+TGG | - | chr8_1:53053047-53053066 | None:intergenic | 40.0% |
| !!! | TGCTTCTTCGGTTTTAGGAA+GGG | - | chr8_1:53053085-53053104 | None:intergenic | 40.0% |
| !!! | TTGCTTCTTCGGTTTTAGGA+AGG | - | chr8_1:53053086-53053105 | None:intergenic | 40.0% |
| !! | TGCAGGTTGTTTTGCTTCTT+CGG | - | chr8_1:53053097-53053116 | None:intergenic | 40.0% |
| !!! | AGATGAACGGTGCTGTTTTT+TGG | - | chr8_1:53053166-53053185 | None:intergenic | 40.0% |
| TCCAAGTTCGCTCATAAAAG+AGG | + | chr8_1:53053209-53053228 | Msa1200420:intron | 40.0% | |
| ! | TCCTCTTTTATGAGCGAACT+TGG | - | chr8_1:53053213-53053232 | None:intergenic | 40.0% |
| TCGCTCATAAAAGAGGAAAG+AGG | + | chr8_1:53053216-53053235 | Msa1200420:intron | 40.0% | |
| TTAAAGTGGTTTCTTGGGTC+TGG | - | chr8_1:53053264-53053283 | None:intergenic | 40.0% | |
| TTTGGAAGGAAAGAAACGCA+AGG | - | chr8_1:53053330-53053349 | None:intergenic | 40.0% | |
| CTCTCTATAAGGCATGAGAA+AGG | - | chr8_1:53053388-53053407 | None:intergenic | 40.0% | |
| GTAACATCTTCATAGCTCAG+TGG | + | chr8_1:53053471-53053490 | Msa1200420:intron | 40.0% | |
| !! | TCTTCAGCTGAGTATTGACT+TGG | + | chr8_1:53053613-53053632 | Msa1200420:intron | 40.0% |
| !! | CTGAGTATTGACTTGGACAT+GGG | + | chr8_1:53053620-53053639 | Msa1200420:CDS | 40.0% |
| GGAAAGCTAGAAAAAGGATC+AGG | + | chr8_1:53053683-53053702 | Msa1200420:CDS | 40.0% | |
| GGTCATCTTTGTGATCTTGT+AGG | + | chr8_1:53053844-53053863 | Msa1200420:intron | 40.0% | |
| CTTGTAGGATAGCATTGTTG+TGG | + | chr8_1:53053859-53053878 | Msa1200420:intron | 40.0% | |
| CATTAAACTCACCATCTTGC+AGG | + | chr8_1:53053891-53053910 | Msa1200420:CDS | 40.0% | |
| !! | TGTCTAGGATGGGTTACAAT+AGG | + | chr8_1:53053933-53053952 | Msa1200420:CDS | 40.0% |
| !! | GGATGGGTTACAATAGGAAA+TGG | + | chr8_1:53053939-53053958 | Msa1200420:CDS | 40.0% |
| ACAATAGGAAATGGCTCAAG+TGG | + | chr8_1:53053948-53053967 | Msa1200420:CDS | 40.0% | |
| ATGGCTCAAGTGGTTGAAAT+TGG | + | chr8_1:53053958-53053977 | Msa1200420:CDS | 40.0% | |
| TGGCTCAAGTGGTTGAAATT+GGG | + | chr8_1:53053959-53053978 | Msa1200420:CDS | 40.0% | |
| AATCGTTGGAGAATCGACAA+GGG | - | chr8_1:53052344-53052363 | None:intergenic | 40.0% | |
| ! | GGAGGTGTAAAACAAGAGTT+TGG | - | chr8_1:53052835-53052854 | None:intergenic | 40.0% |
| !!! | TTTTTGGGTTTTGGTGCTGT+TGG | - | chr8_1:53053047-53053066 | None:intergenic | 40.0% |
| !!! | TGCTTCTTCGGTTTTAGGAA+GGG | - | chr8_1:53053085-53053104 | None:intergenic | 40.0% |
| !!! | TTGCTTCTTCGGTTTTAGGA+AGG | - | chr8_1:53053086-53053105 | None:intergenic | 40.0% |
| !! | TGCAGGTTGTTTTGCTTCTT+CGG | - | chr8_1:53053097-53053116 | None:intergenic | 40.0% |
| !!! | AGATGAACGGTGCTGTTTTT+TGG | - | chr8_1:53053166-53053185 | None:intergenic | 40.0% |
| TCCAAGTTCGCTCATAAAAG+AGG | + | chr8_1:53053209-53053228 | Msa1200420:intron | 40.0% | |
| ! | TCCTCTTTTATGAGCGAACT+TGG | - | chr8_1:53053213-53053232 | None:intergenic | 40.0% |
| TCGCTCATAAAAGAGGAAAG+AGG | + | chr8_1:53053216-53053235 | Msa1200420:intron | 40.0% | |
| TTAAAGTGGTTTCTTGGGTC+TGG | - | chr8_1:53053264-53053283 | None:intergenic | 40.0% | |
| TTTGGAAGGAAAGAAACGCA+AGG | - | chr8_1:53053330-53053349 | None:intergenic | 40.0% | |
| CTCTCTATAAGGCATGAGAA+AGG | - | chr8_1:53053388-53053407 | None:intergenic | 40.0% | |
| GTAACATCTTCATAGCTCAG+TGG | + | chr8_1:53053471-53053490 | Msa1200420:intron | 40.0% | |
| !! | TCTTCAGCTGAGTATTGACT+TGG | + | chr8_1:53053613-53053632 | Msa1200420:intron | 40.0% |
| !! | CTGAGTATTGACTTGGACAT+GGG | + | chr8_1:53053620-53053639 | Msa1200420:CDS | 40.0% |
| GGAAAGCTAGAAAAAGGATC+AGG | + | chr8_1:53053683-53053702 | Msa1200420:CDS | 40.0% | |
| GGTCATCTTTGTGATCTTGT+AGG | + | chr8_1:53053844-53053863 | Msa1200420:intron | 40.0% | |
| CTTGTAGGATAGCATTGTTG+TGG | + | chr8_1:53053859-53053878 | Msa1200420:intron | 40.0% | |
| CATTAAACTCACCATCTTGC+AGG | + | chr8_1:53053891-53053910 | Msa1200420:CDS | 40.0% | |
| !! | TGTCTAGGATGGGTTACAAT+AGG | + | chr8_1:53053933-53053952 | Msa1200420:CDS | 40.0% |
| !! | GGATGGGTTACAATAGGAAA+TGG | + | chr8_1:53053939-53053958 | Msa1200420:CDS | 40.0% |
| ACAATAGGAAATGGCTCAAG+TGG | + | chr8_1:53053948-53053967 | Msa1200420:CDS | 40.0% | |
| ATGGCTCAAGTGGTTGAAAT+TGG | + | chr8_1:53053958-53053977 | Msa1200420:CDS | 40.0% | |
| TGGCTCAAGTGGTTGAAATT+GGG | + | chr8_1:53053959-53053978 | Msa1200420:CDS | 40.0% | |
| CAATCGTTGGAGAATCGACA+AGG | - | chr8_1:53052345-53052364 | None:intergenic | 45.0% | |
| !! | CTTGTCGATTCTCCAACGAT+TGG | + | chr8_1:53052343-53052362 | Msa1200420:CDS | 45.0% |
| ATTGGATCGTCTTGAGCTTC+TGG | + | chr8_1:53052361-53052380 | Msa1200420:CDS | 45.0% | |
| ! | GTTTCGGTCGCCTTATGTTT+TGG | - | chr8_1:53052776-53052795 | None:intergenic | 45.0% |
| !! | TGCTAGCCATTTTGCACTTC+TGG | - | chr8_1:53052953-53052972 | None:intergenic | 45.0% |
| ! | TAAGGGGTTTGTGTTGCTCT+CGG | - | chr8_1:53053136-53053155 | None:intergenic | 45.0% |
| ! | GCTAGTGGACGAGATTAAAG+TGG | - | chr8_1:53053278-53053297 | None:intergenic | 45.0% |
| !! | GCTGAGTATTGACTTGGACA+TGG | + | chr8_1:53053619-53053638 | Msa1200420:intron | 45.0% |
| TGGACATGGGAAACACATCA+AGG | + | chr8_1:53053633-53053652 | Msa1200420:CDS | 45.0% | |
| GTAGGATAGCATTGTTGTGG+AGG | + | chr8_1:53053862-53053881 | Msa1200420:intron | 45.0% | |
| ATTCTATGTGCCCTGCAAGA+TGG | - | chr8_1:53053905-53053924 | None:intergenic | 45.0% | |
| CAATCGTTGGAGAATCGACA+AGG | - | chr8_1:53052345-53052364 | None:intergenic | 45.0% | |
| !! | CTTGTCGATTCTCCAACGAT+TGG | + | chr8_1:53052343-53052362 | Msa1200420:CDS | 45.0% |
| ATTGGATCGTCTTGAGCTTC+TGG | + | chr8_1:53052361-53052380 | Msa1200420:CDS | 45.0% | |
| ! | GTTTCGGTCGCCTTATGTTT+TGG | - | chr8_1:53052776-53052795 | None:intergenic | 45.0% |
| !! | TGCTAGCCATTTTGCACTTC+TGG | - | chr8_1:53052953-53052972 | None:intergenic | 45.0% |
| ! | TAAGGGGTTTGTGTTGCTCT+CGG | - | chr8_1:53053136-53053155 | None:intergenic | 45.0% |
| ! | GCTAGTGGACGAGATTAAAG+TGG | - | chr8_1:53053278-53053297 | None:intergenic | 45.0% |
| !! | GCTGAGTATTGACTTGGACA+TGG | + | chr8_1:53053619-53053638 | Msa1200420:intron | 45.0% |
| TGGACATGGGAAACACATCA+AGG | + | chr8_1:53053633-53053652 | Msa1200420:CDS | 45.0% | |
| GTAGGATAGCATTGTTGTGG+AGG | + | chr8_1:53053862-53053881 | Msa1200420:intron | 45.0% | |
| ATTCTATGTGCCCTGCAAGA+TGG | - | chr8_1:53053905-53053924 | None:intergenic | 45.0% | |
| !! | TAAACAAAAAATAAATTATT+TGG | - | chr8_1:53052703-53052722 | None:intergenic | 5.0% |
| !!! | GATATTATTATTTTTTAAAT+CGG | + | chr8_1:53052904-53052923 | Msa1200420:intron | 5.0% |
| !! | TAAACAAAAAATAAATTATT+TGG | - | chr8_1:53052703-53052722 | None:intergenic | 5.0% |
| !!! | GATATTATTATTTTTTAAAT+CGG | + | chr8_1:53052904-53052923 | Msa1200420:intron | 5.0% |
| GCTCAAGACGATCCAATCGT+TGG | - | chr8_1:53052358-53052377 | None:intergenic | 50.0% | |
| ! | CATTTTGCACTTCTGGTGCG+TGG | - | chr8_1:53052946-53052965 | None:intergenic | 50.0% |
| ! | CACGCACCAGAAGTGCAAAA+TGG | + | chr8_1:53052944-53052963 | Msa1200420:intron | 50.0% |
| TAAGGATGTGGAGGAGCTAG+TGG | - | chr8_1:53053293-53053312 | None:intergenic | 50.0% | |
| GCTCAAGACGATCCAATCGT+TGG | - | chr8_1:53052358-53052377 | None:intergenic | 50.0% | |
| ! | CATTTTGCACTTCTGGTGCG+TGG | - | chr8_1:53052946-53052965 | None:intergenic | 50.0% |
| ! | CACGCACCAGAAGTGCAAAA+TGG | + | chr8_1:53052944-53052963 | Msa1200420:intron | 50.0% |
| TAAGGATGTGGAGGAGCTAG+TGG | - | chr8_1:53053293-53053312 | None:intergenic | 50.0% | |
| ACAACCTGCACCAACCGCAG+AGG | + | chr8_1:53053107-53053126 | Msa1200420:intron | 60.0% | |
| CAACCTGCACCAACCGCAGA+GGG | + | chr8_1:53053108-53053127 | Msa1200420:intron | 60.0% | |
| GTTGCTCTCGGATCCCTCTG+CGG | - | chr8_1:53053124-53053143 | None:intergenic | 60.0% | |
| ACAACCTGCACCAACCGCAG+AGG | + | chr8_1:53053107-53053126 | Msa1200420:intron | 60.0% | |
| CAACCTGCACCAACCGCAGA+GGG | + | chr8_1:53053108-53053127 | Msa1200420:intron | 60.0% | |
| GTTGCTCTCGGATCCCTCTG+CGG | - | chr8_1:53053124-53053143 | None:intergenic | 60.0% | |
| ! | GATCCCTCTGCGGTTGGTGC+AGG | - | chr8_1:53053114-53053133 | None:intergenic | 65.0% |
| CTCTCGGATCCCTCTGCGGT+TGG | - | chr8_1:53053120-53053139 | None:intergenic | 65.0% | |
| ! | GATCCCTCTGCGGTTGGTGC+AGG | - | chr8_1:53053114-53053133 | None:intergenic | 65.0% |
| CTCTCGGATCCCTCTGCGGT+TGG | - | chr8_1:53053120-53053139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 53052305 | 53054199 | 53052305 | ID=Msa1200420;Name=Msa1200420 |
| chr8_1 | mRNA | 53052305 | 53054199 | 53052305 | ID=Msa1200420-mRNA-1;Parent=Msa1200420;Name=Msa1200420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.75|1|1|1|4|214|177 |
| chr8_1 | exon | 53052305 | 53052382 | 53052305 | ID=Msa1200420-mRNA-1:exon:16960;Parent=Msa1200420-mRNA-1 |
| chr8_1 | exon | 53052512 | 53052688 | 53052512 | ID=Msa1200420-mRNA-1:exon:16961;Parent=Msa1200420-mRNA-1 |
| chr8_1 | exon | 53053620 | 53053778 | 53053620 | ID=Msa1200420-mRNA-1:exon:16962;Parent=Msa1200420-mRNA-1 |
| chr8_1 | exon | 53053866 | 53054199 | 53053866 | ID=Msa1200420-mRNA-1:exon:16963;Parent=Msa1200420-mRNA-1 |
| chr8_1 | CDS | 53052305 | 53052382 | 53052305 | ID=Msa1200420-mRNA-1:cds;Parent=Msa1200420-mRNA-1 |
| chr8_1 | CDS | 53052512 | 53052688 | 53052512 | ID=Msa1200420-mRNA-1:cds;Parent=Msa1200420-mRNA-1 |
| chr8_1 | CDS | 53053620 | 53053778 | 53053620 | ID=Msa1200420-mRNA-1:cds;Parent=Msa1200420-mRNA-1 |
| chr8_1 | CDS | 53053866 | 53053985 | 53053866 | ID=Msa1200420-mRNA-1:cds;Parent=Msa1200420-mRNA-1 |
| chr8_1 | three_prime_UTR | 53053986 | 53054199 | 53053986 | ID=Msa1200420-mRNA-1:three_prime_utr;Parent=Msa1200420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
