Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187700 | XP_013468294.1 | 94.050 | 605 | 36 | 0 | 1 | 605 | 1 | 605 | 0.0 | 1123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187700 | sp|Q8VY27|E70H1_ARATH | 44.268 | 567 | 304 | 6 | 42 | 600 | 46 | 608 | 6.87e-152 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187700 | A0A072VL52 | 94.050 | 605 | 36 | 0 | 1 | 605 | 1 | 605 | 0.0 | 1123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011050 | Msa0187700 | 0.808437 | 3.097931e-50 | -8.615850e-47 |
| Msa0151220 | Msa0187700 | 0.806510 | 7.943757e-50 | -8.615850e-47 |
| Msa0187700 | Msa0696100 | 0.800306 | 1.533445e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187700 | MtrunA17_Chr1g0182041 | 94.050 | 605 | 36 | 0 | 1 | 605 | 1 | 605 | 0.0 | 1123 |
| Msa0187700 | MtrunA17_Chr1g0182031 | 79.008 | 605 | 124 | 2 | 1 | 604 | 1 | 603 | 0.0 | 959 |
| Msa0187700 | MtrunA17_Chr4g0030621 | 47.059 | 578 | 270 | 11 | 42 | 600 | 42 | 602 | 3.34e-163 | 480 |
| Msa0187700 | MtrunA17_Chr2g0327741 | 46.914 | 567 | 260 | 9 | 42 | 596 | 38 | 575 | 3.22e-159 | 469 |
| Msa0187700 | MtrunA17_Chr8g0344461 | 32.792 | 616 | 341 | 17 | 42 | 603 | 9 | 605 | 5.12e-94 | 301 |
| Msa0187700 | MtrunA17_Chr7g0219041 | 32.190 | 525 | 321 | 11 | 100 | 600 | 151 | 664 | 3.92e-76 | 255 |
| Msa0187700 | MtrunA17_Chr4g0057561 | 29.362 | 596 | 371 | 11 | 41 | 600 | 97 | 678 | 8.49e-76 | 255 |
| Msa0187700 | MtrunA17_Chr1g0197101 | 28.243 | 609 | 378 | 12 | 32 | 604 | 57 | 642 | 2.27e-71 | 242 |
| Msa0187700 | MtrunA17_Chr3g0106431 | 30.291 | 515 | 332 | 8 | 100 | 600 | 116 | 617 | 1.02e-68 | 234 |
| Msa0187700 | MtrunA17_Chr5g0431731 | 30.543 | 442 | 289 | 7 | 166 | 600 | 201 | 631 | 1.45e-68 | 234 |
| Msa0187700 | MtrunA17_Chr1g0177671 | 28.885 | 592 | 374 | 12 | 32 | 600 | 56 | 623 | 3.98e-68 | 233 |
| Msa0187700 | MtrunA17_Chr7g0224041 | 29.099 | 433 | 290 | 10 | 178 | 600 | 223 | 648 | 2.46e-57 | 204 |
| Msa0187700 | MtrunA17_Chr3g0086881 | 26.568 | 542 | 372 | 11 | 72 | 600 | 78 | 606 | 3.39e-56 | 200 |
| Msa0187700 | MtrunA17_Chr6g0462011 | 27.500 | 440 | 306 | 7 | 171 | 600 | 287 | 723 | 9.98e-54 | 195 |
| Msa0187700 | MtrunA17_Chr5g0431741 | 27.716 | 451 | 305 | 10 | 166 | 607 | 258 | 696 | 2.30e-48 | 179 |
| Msa0187700 | MtrunA17_Chr5g0432091 | 27.362 | 508 | 332 | 13 | 107 | 600 | 217 | 701 | 6.08e-43 | 164 |
| Msa0187700 | MtrunA17_Chr1g0214001 | 25.758 | 462 | 295 | 12 | 180 | 600 | 212 | 666 | 3.13e-40 | 156 |
| Msa0187700 | MtrunA17_Chr5g0431811 | 27.066 | 351 | 214 | 6 | 166 | 508 | 287 | 603 | 1.15e-31 | 131 |
| Msa0187700 | MtrunA17_Chr5g0432041 | 23.789 | 454 | 296 | 12 | 166 | 600 | 251 | 673 | 2.64e-29 | 123 |
| Msa0187700 | MtrunA17_Chr5g0431761 | 26.977 | 215 | 155 | 2 | 166 | 379 | 259 | 472 | 4.08e-25 | 110 |
| Msa0187700 | MtrunA17_Chr1g0147911 | 22.374 | 514 | 336 | 14 | 105 | 600 | 183 | 651 | 5.29e-21 | 97.4 |
| Msa0187700 | MtrunA17_Chr5g0431971 | 23.934 | 305 | 209 | 7 | 298 | 600 | 40 | 323 | 4.76e-20 | 91.7 |
| Msa0187700 | MtrunA17_Chr4g0002391 | 21.604 | 611 | 418 | 18 | 1 | 600 | 79 | 639 | 6.05e-20 | 94.4 |
| Msa0187700 | MtrunA17_Chr1g0152401 | 22.449 | 441 | 296 | 13 | 158 | 567 | 234 | 659 | 1.03e-19 | 93.6 |
| Msa0187700 | MtrunA17_Chr3g0104851 | 23.301 | 412 | 271 | 13 | 169 | 565 | 251 | 632 | 4.33e-19 | 91.7 |
| Msa0187700 | MtrunA17_Chr2g0300651 | 20.862 | 580 | 407 | 14 | 1 | 575 | 77 | 609 | 1.90e-17 | 86.3 |
| Msa0187700 | MtrunA17_Chr5g0431871 | 30.573 | 157 | 95 | 4 | 172 | 320 | 7 | 157 | 2.73e-16 | 77.4 |
| Msa0187700 | MtrunA17_Chr5g0444661 | 23.897 | 272 | 174 | 7 | 252 | 516 | 155 | 400 | 1.47e-14 | 76.3 |
| Msa0187700 | MtrunA17_Chr5g0431991 | 27.389 | 157 | 103 | 4 | 166 | 320 | 250 | 397 | 1.96e-14 | 75.9 |
| Msa0187700 | MtrunA17_Chr5g0431881 | 25.269 | 186 | 134 | 2 | 425 | 606 | 43 | 227 | 5.87e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187700 | AT3G09520.1 | 48.955 | 574 | 270 | 8 | 42 | 602 | 43 | 606 | 0.0 | 534 |
| Msa0187700 | AT2G39380.1 | 43.750 | 608 | 325 | 7 | 7 | 600 | 4 | 608 | 6.63e-162 | 478 |
| Msa0187700 | AT5G59730.1 | 43.939 | 594 | 312 | 7 | 31 | 604 | 8 | 600 | 8.32e-158 | 467 |
| Msa0187700 | AT5G59730.2 | 43.939 | 594 | 312 | 7 | 31 | 604 | 8 | 600 | 1.34e-157 | 466 |
| Msa0187700 | AT3G55150.1 | 44.268 | 567 | 304 | 6 | 42 | 600 | 46 | 608 | 6.98e-153 | 454 |
| Msa0187700 | AT3G09530.1 | 45.009 | 571 | 294 | 10 | 42 | 600 | 38 | 600 | 1.33e-151 | 451 |
| Msa0187700 | AT2G28640.1 | 41.536 | 573 | 304 | 10 | 42 | 605 | 32 | 582 | 9.91e-138 | 414 |
| Msa0187700 | AT1G07725.1 | 39.691 | 582 | 315 | 10 | 42 | 605 | 32 | 595 | 2.90e-134 | 406 |
| Msa0187700 | AT2G28650.1 | 41.156 | 571 | 275 | 13 | 42 | 600 | 33 | 554 | 2.39e-111 | 345 |
| Msa0187700 | AT3G14090.1 | 30.146 | 617 | 374 | 12 | 34 | 603 | 7 | 613 | 2.98e-91 | 295 |
| Msa0187700 | AT1G54090.1 | 30.000 | 620 | 370 | 13 | 32 | 600 | 3 | 609 | 8.77e-82 | 270 |
| Msa0187700 | AT5G50380.1 | 29.106 | 615 | 361 | 13 | 39 | 600 | 77 | 669 | 1.56e-77 | 260 |
| Msa0187700 | AT1G72470.1 | 33.405 | 464 | 283 | 10 | 163 | 610 | 175 | 628 | 7.17e-77 | 257 |
| Msa0187700 | AT5G52340.1 | 29.698 | 596 | 377 | 12 | 32 | 608 | 56 | 628 | 4.90e-72 | 244 |
| Msa0187700 | AT5G03540.1 | 29.500 | 600 | 374 | 13 | 32 | 605 | 56 | 632 | 6.54e-72 | 244 |
| Msa0187700 | AT5G03540.2 | 30.492 | 528 | 322 | 12 | 100 | 605 | 13 | 517 | 6.37e-71 | 238 |
| Msa0187700 | AT3G29400.1 | 29.912 | 565 | 352 | 12 | 71 | 601 | 92 | 646 | 1.07e-69 | 238 |
| Msa0187700 | AT5G03540.3 | 28.864 | 634 | 360 | 17 | 32 | 605 | 56 | 658 | 1.92e-68 | 235 |
| Msa0187700 | AT5G58430.1 | 27.461 | 579 | 372 | 11 | 46 | 600 | 62 | 616 | 3.38e-66 | 228 |
| Msa0187700 | AT1G07000.1 | 27.165 | 508 | 332 | 8 | 102 | 602 | 120 | 596 | 2.25e-61 | 214 |
| Msa0187700 | AT5G61010.1 | 26.334 | 581 | 380 | 11 | 41 | 600 | 71 | 624 | 7.24e-57 | 203 |
| Msa0187700 | AT5G61010.2 | 26.334 | 581 | 380 | 11 | 41 | 600 | 71 | 624 | 7.24e-57 | 203 |
| Msa0187700 | AT5G13990.1 | 27.141 | 619 | 407 | 17 | 11 | 607 | 89 | 685 | 1.12e-55 | 201 |
| Msa0187700 | AT5G52350.1 | 28.798 | 441 | 275 | 9 | 177 | 604 | 164 | 578 | 9.59e-53 | 191 |
| Msa0187700 | AT5G13150.1 | 24.483 | 580 | 397 | 13 | 43 | 600 | 82 | 642 | 7.97e-50 | 183 |
| Msa0187700 | AT4G31540.1 | 22.673 | 419 | 299 | 9 | 192 | 600 | 251 | 654 | 2.05e-21 | 99.4 |
| Msa0187700 | AT1G51640.1 | 19.205 | 453 | 325 | 10 | 170 | 600 | 192 | 625 | 9.22e-14 | 75.1 |
Find 109 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATCCAGTCTCCGTTTC+AGG | 0.234271 | 2_1:-2408096 | None:intergenic |
| GATTGAAGGTGTTGTGCTTT+TGG | 0.238549 | 2_1:-2406924 | None:intergenic |
| GTTATATACTCACCGGATTA+TGG | 0.250439 | 2_1:+2408542 | Msa0187700:CDS |
| GGAGTACTGTTGGATGATTC+TGG | 0.270997 | 2_1:-2408075 | None:intergenic |
| GTATATAACTCGCGATAAAT+TGG | 0.286063 | 2_1:-2408528 | None:intergenic |
| GTGTGTAATAAATCTTCTTT+TGG | 0.287796 | 2_1:+2407864 | Msa0187700:CDS |
| TCGAACTTGCAATACATTCT+AGG | 0.302218 | 2_1:+2408252 | Msa0187700:CDS |
| AGCAAAACAAGCTTCTTTGA+TGG | 0.319031 | 2_1:-2407632 | None:intergenic |
| ACCGAAATTTGCCTCCGATT+TGG | 0.339689 | 2_1:-2407917 | None:intergenic |
| TCCAAATCGGAGGCAAATTT+CGG | 0.340063 | 2_1:+2407916 | Msa0187700:CDS |
| TCTTCATAGCGATTTGCATT+AGG | 0.357734 | 2_1:-2407156 | None:intergenic |
| GGACTGTATAAGTAAGATTC+AGG | 0.371656 | 2_1:-2408054 | None:intergenic |
| AGGTATTTCTCAACATCTTC+AGG | 0.372058 | 2_1:-2408606 | None:intergenic |
| GTTGTTTATGAAATTCAAAC+TGG | 0.373925 | 2_1:+2408410 | Msa0187700:CDS |
| TTTGGCATAATCCGAGGTTT+CGG | 0.380187 | 2_1:-2407002 | None:intergenic |
| TTATTACACACTCGATTAAT+CGG | 0.380241 | 2_1:-2407852 | None:intergenic |
| CCTGGTTCATGGTTAATATC+TGG | 0.387044 | 2_1:-2407198 | None:intergenic |
| TCTTCGCGAAATTCCGATTC+CGG | 0.388464 | 2_1:-2408474 | None:intergenic |
| GTTGTAGCTTTCCTGATTGA+AGG | 0.396655 | 2_1:-2406938 | None:intergenic |
| TACAATCACTGTGTTGTTGC+CGG | 0.404642 | 2_1:+2407762 | Msa0187700:CDS |
| GTCCAAGCAGGCCTGGTTCA+TGG | 0.411766 | 2_1:-2407209 | None:intergenic |
| AAAAGAACAGAAAGAAGTTC+TGG | 0.416935 | 2_1:-2407257 | None:intergenic |
| TTGAGATGAAAATCAATAGT+TGG | 0.422153 | 2_1:+2407530 | Msa0187700:CDS |
| GAGAAAATTGATTCAATCTC+CGG | 0.427721 | 2_1:-2407781 | None:intergenic |
| GTAGAAGATGGAAGTTACTT+TGG | 0.438985 | 2_1:-2407020 | None:intergenic |
| ATTGAAGGATTCTTCCAAAT+CGG | 0.441001 | 2_1:+2407903 | Msa0187700:CDS |
| GAAAATCAATAGTTGGTTAG+AGG | 0.443123 | 2_1:+2407537 | Msa0187700:CDS |
| TGGAATTCGAGAAAGCTTAT+CGG | 0.443219 | 2_1:+2408430 | Msa0187700:CDS |
| GTTTCTGTCGTTGTAGAAGA+TGG | 0.452540 | 2_1:-2407032 | None:intergenic |
| AACCATGAACCAGGCCTGCT+TGG | 0.455528 | 2_1:+2407207 | Msa0187700:CDS |
| TAACAGTTCCCGCCATAATC+CGG | 0.470079 | 2_1:-2408554 | None:intergenic |
| CGAAGGTGAATAAGATGGAC+TGG | 0.472993 | 2_1:+2407500 | Msa0187700:CDS |
| GGAAGAATCCTTCAATATTG+TGG | 0.473142 | 2_1:-2407896 | None:intergenic |
| AGTACTCCTGAAACGGAGAC+TGG | 0.476848 | 2_1:+2408090 | Msa0187700:CDS |
| TATTTCTCGCAAACAATCTC+CGG | 0.478278 | 2_1:+2408205 | Msa0187700:CDS |
| GCCACCGTCATCGCCGCCGT+TGG | 0.482433 | 2_1:-2408375 | None:intergenic |
| GAAGTACGAAAGAGTGGCGT+GGG | 0.483739 | 2_1:+2408323 | Msa0187700:CDS |
| CTCCGTTTCAGGAGTACTGT+TGG | 0.488327 | 2_1:-2408085 | None:intergenic |
| ATTTGAGTCCACAATATTGA+AGG | 0.488723 | 2_1:+2407888 | Msa0187700:CDS |
| AAAGCACAACACCTTCAATC+AGG | 0.489217 | 2_1:+2406927 | Msa0187700:CDS |
| TCAGTGAGGACGCTCTTCGC+TGG | 0.490128 | 2_1:+2407571 | Msa0187700:CDS |
| TAGCGTACATATCAAGCAAT+CGG | 0.495943 | 2_1:-2407741 | None:intergenic |
| GGTATTTCTCAACATCTTCA+GGG | 0.497981 | 2_1:-2408605 | None:intergenic |
| ATAAATACCTTCTTCGACGA+TGG | 0.507510 | 2_1:-2407449 | None:intergenic |
| TGTATTGCAAGTTCGATTGA+CGG | 0.508321 | 2_1:-2408245 | None:intergenic |
| ATTCAGAGTCCAAGCAGGCC+TGG | 0.509446 | 2_1:-2407216 | None:intergenic |
| GATGAACTTGAAGTTGAAGA+TGG | 0.511749 | 2_1:-2406902 | None:intergenic |
| AGTGCATGGCTCTTTGAAGT+TGG | 0.511939 | 2_1:-2407084 | None:intergenic |
| ATCCAACAGTACTCCTGAAA+CGG | 0.513452 | 2_1:+2408083 | Msa0187700:CDS |
| GGCGGCGATGACGGTGGCAA+AGG | 0.516976 | 2_1:+2408380 | Msa0187700:CDS |
| GACTCTGAATCCTTCTCCGT+CGG | 0.526290 | 2_1:+2407229 | Msa0187700:CDS |
| AGAAAATCCATCGTCGAAGA+AGG | 0.529141 | 2_1:+2407442 | Msa0187700:CDS |
| AATACATTCTAGGCGACGAT+TGG | 0.529711 | 2_1:+2408262 | Msa0187700:CDS |
| AGCAATCGGAAAATCTTCTC+CGG | 0.533089 | 2_1:-2407727 | None:intergenic |
| AGTTGAAGATGGTGAACTGT+TGG | 0.535670 | 2_1:-2406891 | None:intergenic |
| GGCAACGGTGACTTCGACGG+TGG | 0.543234 | 2_1:-2408033 | None:intergenic |
| TCTGGAGGATCCGACGGAGA+AGG | 0.546228 | 2_1:-2407239 | None:intergenic |
| AGACGATATTCGCGCTGCAG+AGG | 0.546912 | 2_1:+2407300 | Msa0187700:CDS |
| TTTCTCGAAGGTGAATAAGA+TGG | 0.547807 | 2_1:+2407495 | Msa0187700:CDS |
| AACGGTGACTTCGACGGTGG+AGG | 0.552329 | 2_1:-2408030 | None:intergenic |
| AAATCCAACGGCGGCGATGA+CGG | 0.556100 | 2_1:+2408371 | Msa0187700:CDS |
| TCTCCGGCACGTGGTGGACA+AGG | 0.556419 | 2_1:+2408221 | Msa0187700:CDS |
| TTTGCTGAGATTTCTAAGGA+TGG | 0.559013 | 2_1:+2407649 | Msa0187700:CDS |
| CGATTGGCTGTTGAATCACA+TGG | 0.564974 | 2_1:+2408278 | Msa0187700:CDS |
| CCAGATATTAACCATGAACC+AGG | 0.566637 | 2_1:+2407198 | Msa0187700:CDS |
| ATCGCGAGTTATATACTCAC+CGG | 0.568242 | 2_1:+2408535 | Msa0187700:CDS |
| GAAGGATTCAGAGTCCAAGC+AGG | 0.571632 | 2_1:-2407221 | None:intergenic |
| GAGAATTATTGCTGAGTGCA+TGG | 0.576711 | 2_1:+2407372 | Msa0187700:CDS |
| TATACTCACCGGATTATGGC+GGG | 0.583556 | 2_1:+2408546 | Msa0187700:CDS |
| TCTCAAATCATCCACAGCAT+CGG | 0.585836 | 2_1:-2407353 | None:intergenic |
| TAATGCAAATCGCTATGAAG+AGG | 0.591024 | 2_1:+2407158 | Msa0187700:CDS |
| ACGCGTTTCTTCCGATGCTG+TGG | 0.594887 | 2_1:+2407342 | Msa0187700:CDS |
| ATCATTGCCGGAAAATCCAA+CGG | 0.596877 | 2_1:+2408359 | Msa0187700:CDS |
| AGAAGTTCTGGAGGATCCGA+CGG | 0.598016 | 2_1:-2407245 | None:intergenic |
| GAAGGATTCTTCCAAATCGG+AGG | 0.600978 | 2_1:+2407906 | Msa0187700:CDS |
| GGACCTTGTCCACCACGTGC+CGG | 0.606095 | 2_1:-2408224 | None:intergenic |
| AGTTACTTTGGCATAATCCG+AGG | 0.606357 | 2_1:-2407008 | None:intergenic |
| CTGGTGAATCTCTTCTGTGA+GGG | 0.606897 | 2_1:+2408627 | Msa0187700:CDS |
| TGCTTGAGATTTAACGACGG+TGG | 0.607776 | 2_1:-2407815 | None:intergenic |
| TATAAGTAAGATTCAGGCAA+CGG | 0.608917 | 2_1:-2408048 | None:intergenic |
| AATCAATAGTTGGTTAGAGG+CGG | 0.609517 | 2_1:+2407540 | Msa0187700:CDS |
| CGCAAACAATCTCCGGCACG+TGG | 0.610744 | 2_1:+2408212 | Msa0187700:CDS |
| CCTCACAGAAGAGATTCACC+AGG | 0.612658 | 2_1:-2408626 | None:intergenic |
| GAAGGTGAATAAGATGGACT+GGG | 0.618235 | 2_1:+2407501 | Msa0187700:CDS |
| AAAATGGAACTCCGAAACCT+CGG | 0.618911 | 2_1:+2406991 | Msa0187700:CDS |
| GGACGCTCTTCGCTGGAGAG+AGG | 0.626302 | 2_1:+2407578 | Msa0187700:CDS |
| GAGCTCGAGTAACGAGTGCA+TGG | 0.630095 | 2_1:-2407098 | None:intergenic |
| GTATTTCTCAACATCTTCAG+GGG | 0.632563 | 2_1:-2408604 | None:intergenic |
| TCAGGCAACGGTGACTTCGA+CGG | 0.636020 | 2_1:-2408036 | None:intergenic |
| GATGGAGAAGTACGAAAGAG+TGG | 0.637674 | 2_1:+2408317 | Msa0187700:CDS |
| AAATCGGAGGCAAATTTCGG+TGG | 0.637981 | 2_1:+2407919 | Msa0187700:CDS |
| AATCAGCCACGCTATTCGAA+CGG | 0.638390 | 2_1:-2408118 | None:intergenic |
| AGAACAGAAAGAAGTTCTGG+AGG | 0.641567 | 2_1:-2407254 | None:intergenic |
| TCCAACGGCGGCGATGACGG+TGG | 0.642882 | 2_1:+2408374 | Msa0187700:CDS |
| AAGTGAAGATTCGATCGATG+AGG | 0.646245 | 2_1:-2407603 | None:intergenic |
| AACGTGATGAATGTACTGAA+TGG | 0.652322 | 2_1:-2407059 | None:intergenic |
| ATATACTCACCGGATTATGG+CGG | 0.655149 | 2_1:+2408545 | Msa0187700:CDS |
| AGAAGTACGAAAGAGTGGCG+TGG | 0.659071 | 2_1:+2408322 | Msa0187700:CDS |
| TGAGGAACGAAGTTTCTCGA+AGG | 0.666113 | 2_1:+2407483 | Msa0187700:CDS |
| AAACAATCTCCGGCACGTGG+TGG | 0.666758 | 2_1:+2408215 | Msa0187700:CDS |
| GCTGTTGAATCACATGGAGA+AGG | 0.668661 | 2_1:+2408284 | Msa0187700:CDS |
| CCTGGTGAATCTCTTCTGTG+AGG | 0.681075 | 2_1:+2408626 | Msa0187700:CDS |
| AAGTACGAAAGAGTGGCGTG+GGG | 0.681583 | 2_1:+2408324 | Msa0187700:CDS |
| TATTTATAAACTGAACGTTG+AGG | 0.684209 | 2_1:+2407465 | Msa0187700:CDS |
| TTGGAATTTACTGAAAACGA+CGG | 0.685019 | 2_1:-2406872 | None:intergenic |
| TGAAGATGTTGAGAAATACC+TGG | 0.707687 | 2_1:+2408608 | Msa0187700:CDS |
| ATATGCTTGAGATTTAACGA+CGG | 0.737638 | 2_1:-2407818 | None:intergenic |
| ATTGCCGGAAAATCCAACGG+CGG | 0.738707 | 2_1:+2408362 | Msa0187700:CDS |
| AGGCGGTTAAGATCTCAGTG+AGG | 0.809773 | 2_1:+2407557 | Msa0187700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAGAAATCAAAAC+CGG | + | chr2_1:2407708-2407727 | Msa0187700:CDS | 20.0% |
| !! | AAAAACAAAGAAATCAAAAC+CGG | + | chr2_1:2407708-2407727 | Msa0187700:CDS | 20.0% |
| !! | ATATCTGGTAAAACTCTTTT+TGG | - | chr2_1:2407186-2407205 | None:intergenic | 25.0% |
| ! | TATTTATAAACTGAACGTTG+AGG | + | chr2_1:2407465-2407484 | Msa0187700:CDS | 25.0% |
| ! | TTGAGATGAAAATCAATAGT+TGG | + | chr2_1:2407530-2407549 | Msa0187700:CDS | 25.0% |
| ! | TTATTACACACTCGATTAAT+CGG | - | chr2_1:2407855-2407874 | None:intergenic | 25.0% |
| !! | GTGTGTAATAAATCTTCTTT+TGG | + | chr2_1:2407864-2407883 | Msa0187700:CDS | 25.0% |
| ! | GTTGTTTATGAAATTCAAAC+TGG | + | chr2_1:2408410-2408429 | Msa0187700:CDS | 25.0% |
| !! | ATATCTGGTAAAACTCTTTT+TGG | - | chr2_1:2407186-2407205 | None:intergenic | 25.0% |
| ! | TATTTATAAACTGAACGTTG+AGG | + | chr2_1:2407465-2407484 | Msa0187700:CDS | 25.0% |
| ! | TTGAGATGAAAATCAATAGT+TGG | + | chr2_1:2407530-2407549 | Msa0187700:CDS | 25.0% |
| ! | TTATTACACACTCGATTAAT+CGG | - | chr2_1:2407855-2407874 | None:intergenic | 25.0% |
| !! | GTGTGTAATAAATCTTCTTT+TGG | + | chr2_1:2407864-2407883 | Msa0187700:CDS | 25.0% |
| ! | GTTGTTTATGAAATTCAAAC+TGG | + | chr2_1:2408410-2408429 | Msa0187700:CDS | 25.0% |
| TTGGAATTTACTGAAAACGA+CGG | - | chr2_1:2406875-2406894 | None:intergenic | 30.0% | |
| CAGAAGAACTGATACAAAAA+TGG | + | chr2_1:2406975-2406994 | Msa0187700:CDS | 30.0% | |
| ! | TTTTGTGCATGGATAAGTTT+TGG | - | chr2_1:2407136-2407155 | None:intergenic | 30.0% |
| AAAAGAACAGAAAGAAGTTC+TGG | - | chr2_1:2407260-2407279 | None:intergenic | 30.0% | |
| ! | ACTTCTTTCTGTTCTTTTGA+CGG | + | chr2_1:2407262-2407281 | Msa0187700:CDS | 30.0% |
| GAAAATCAATAGTTGGTTAG+AGG | + | chr2_1:2407537-2407556 | Msa0187700:CDS | 30.0% | |
| !! | TTGTTTTGCTGAGATTTCTA+AGG | + | chr2_1:2407645-2407664 | Msa0187700:CDS | 30.0% |
| ! | GAGAAAATTGATTCAATCTC+CGG | - | chr2_1:2407784-2407803 | None:intergenic | 30.0% |
| ATATGCTTGAGATTTAACGA+CGG | - | chr2_1:2407821-2407840 | None:intergenic | 30.0% | |
| ATTTGAGTCCACAATATTGA+AGG | + | chr2_1:2407888-2407907 | Msa0187700:CDS | 30.0% | |
| ATTGAAGGATTCTTCCAAAT+CGG | + | chr2_1:2407903-2407922 | Msa0187700:CDS | 30.0% | |
| TATAAGTAAGATTCAGGCAA+CGG | - | chr2_1:2408051-2408070 | None:intergenic | 30.0% | |
| GTATATAACTCGCGATAAAT+TGG | - | chr2_1:2408531-2408550 | None:intergenic | 30.0% | |
| TTGGAATTTACTGAAAACGA+CGG | - | chr2_1:2406875-2406894 | None:intergenic | 30.0% | |
| CAGAAGAACTGATACAAAAA+TGG | + | chr2_1:2406975-2406994 | Msa0187700:CDS | 30.0% | |
| ! | TTTTGTGCATGGATAAGTTT+TGG | - | chr2_1:2407136-2407155 | None:intergenic | 30.0% |
| AAAAGAACAGAAAGAAGTTC+TGG | - | chr2_1:2407260-2407279 | None:intergenic | 30.0% | |
| ! | ACTTCTTTCTGTTCTTTTGA+CGG | + | chr2_1:2407262-2407281 | Msa0187700:CDS | 30.0% |
| GAAAATCAATAGTTGGTTAG+AGG | + | chr2_1:2407537-2407556 | Msa0187700:CDS | 30.0% | |
| !! | TTGTTTTGCTGAGATTTCTA+AGG | + | chr2_1:2407645-2407664 | Msa0187700:CDS | 30.0% |
| ! | GAGAAAATTGATTCAATCTC+CGG | - | chr2_1:2407784-2407803 | None:intergenic | 30.0% |
| ATATGCTTGAGATTTAACGA+CGG | - | chr2_1:2407821-2407840 | None:intergenic | 30.0% | |
| ATTTGAGTCCACAATATTGA+AGG | + | chr2_1:2407888-2407907 | Msa0187700:CDS | 30.0% | |
| ATTGAAGGATTCTTCCAAAT+CGG | + | chr2_1:2407903-2407922 | Msa0187700:CDS | 30.0% | |
| TATAAGTAAGATTCAGGCAA+CGG | - | chr2_1:2408051-2408070 | None:intergenic | 30.0% | |
| GTATATAACTCGCGATAAAT+TGG | - | chr2_1:2408531-2408550 | None:intergenic | 30.0% | |
| GATGAACTTGAAGTTGAAGA+TGG | - | chr2_1:2406905-2406924 | None:intergenic | 35.0% | |
| GTAGAAGATGGAAGTTACTT+TGG | - | chr2_1:2407023-2407042 | None:intergenic | 35.0% | |
| AACGTGATGAATGTACTGAA+TGG | - | chr2_1:2407062-2407081 | None:intergenic | 35.0% | |
| !! | TTTGCATTAGGTTTTGTGCA+TGG | - | chr2_1:2407147-2407166 | None:intergenic | 35.0% |
| TCTTCATAGCGATTTGCATT+AGG | - | chr2_1:2407159-2407178 | None:intergenic | 35.0% | |
| TAATGCAAATCGCTATGAAG+AGG | + | chr2_1:2407158-2407177 | Msa0187700:CDS | 35.0% | |
| TGCATGGTTAAAAACGGTTA+TGG | + | chr2_1:2407388-2407407 | Msa0187700:CDS | 35.0% | |
| ATAAATACCTTCTTCGACGA+TGG | - | chr2_1:2407452-2407471 | None:intergenic | 35.0% | |
| TTTCTCGAAGGTGAATAAGA+TGG | + | chr2_1:2407495-2407514 | Msa0187700:CDS | 35.0% | |
| AATCAATAGTTGGTTAGAGG+CGG | + | chr2_1:2407540-2407559 | Msa0187700:CDS | 35.0% | |
| AGCAAAACAAGCTTCTTTGA+TGG | - | chr2_1:2407635-2407654 | None:intergenic | 35.0% | |
| ! | TTTGCTGAGATTTCTAAGGA+TGG | + | chr2_1:2407649-2407668 | Msa0187700:CDS | 35.0% |
| !!! | TTTGTTTTTGCAACGAGTTC+AGG | - | chr2_1:2407697-2407716 | None:intergenic | 35.0% |
| TAGCGTACATATCAAGCAAT+CGG | - | chr2_1:2407744-2407763 | None:intergenic | 35.0% | |
| GGAAGAATCCTTCAATATTG+TGG | - | chr2_1:2407899-2407918 | None:intergenic | 35.0% | |
| GGACTGTATAAGTAAGATTC+AGG | - | chr2_1:2408057-2408076 | None:intergenic | 35.0% | |
| TATTTCTCGCAAACAATCTC+CGG | + | chr2_1:2408205-2408224 | Msa0187700:CDS | 35.0% | |
| TGTATTGCAAGTTCGATTGA+CGG | - | chr2_1:2408248-2408267 | None:intergenic | 35.0% | |
| TCGAACTTGCAATACATTCT+AGG | + | chr2_1:2408252-2408271 | Msa0187700:CDS | 35.0% | |
| !!! | AGAAGTGTTTTCATCATTGC+CGG | + | chr2_1:2408347-2408366 | Msa0187700:CDS | 35.0% |
| TGGAATTCGAGAAAGCTTAT+CGG | + | chr2_1:2408430-2408449 | Msa0187700:CDS | 35.0% | |
| !!! | TCAGAGTTCATTTGTTTTGC+CGG | + | chr2_1:2408455-2408474 | Msa0187700:CDS | 35.0% |
| !!! | TTCATTTGTTTTGCCGGAAT+CGG | + | chr2_1:2408461-2408480 | Msa0187700:CDS | 35.0% |
| GTTATATACTCACCGGATTA+TGG | + | chr2_1:2408542-2408561 | Msa0187700:CDS | 35.0% | |
| GTATTTCTCAACATCTTCAG+GGG | - | chr2_1:2408607-2408626 | None:intergenic | 35.0% | |
| GGTATTTCTCAACATCTTCA+GGG | - | chr2_1:2408608-2408627 | None:intergenic | 35.0% | |
| AGGTATTTCTCAACATCTTC+AGG | - | chr2_1:2408609-2408628 | None:intergenic | 35.0% | |
| TGAAGATGTTGAGAAATACC+TGG | + | chr2_1:2408608-2408627 | Msa0187700:CDS | 35.0% | |
| GATGAACTTGAAGTTGAAGA+TGG | - | chr2_1:2406905-2406924 | None:intergenic | 35.0% | |
| GTAGAAGATGGAAGTTACTT+TGG | - | chr2_1:2407023-2407042 | None:intergenic | 35.0% | |
| AACGTGATGAATGTACTGAA+TGG | - | chr2_1:2407062-2407081 | None:intergenic | 35.0% | |
| !! | TTTGCATTAGGTTTTGTGCA+TGG | - | chr2_1:2407147-2407166 | None:intergenic | 35.0% |
| TCTTCATAGCGATTTGCATT+AGG | - | chr2_1:2407159-2407178 | None:intergenic | 35.0% | |
| TAATGCAAATCGCTATGAAG+AGG | + | chr2_1:2407158-2407177 | Msa0187700:CDS | 35.0% | |
| TGCATGGTTAAAAACGGTTA+TGG | + | chr2_1:2407388-2407407 | Msa0187700:CDS | 35.0% | |
| ATAAATACCTTCTTCGACGA+TGG | - | chr2_1:2407452-2407471 | None:intergenic | 35.0% | |
| TTTCTCGAAGGTGAATAAGA+TGG | + | chr2_1:2407495-2407514 | Msa0187700:CDS | 35.0% | |
| AATCAATAGTTGGTTAGAGG+CGG | + | chr2_1:2407540-2407559 | Msa0187700:CDS | 35.0% | |
| AGCAAAACAAGCTTCTTTGA+TGG | - | chr2_1:2407635-2407654 | None:intergenic | 35.0% | |
| ! | TTTGCTGAGATTTCTAAGGA+TGG | + | chr2_1:2407649-2407668 | Msa0187700:CDS | 35.0% |
| !!! | TTTGTTTTTGCAACGAGTTC+AGG | - | chr2_1:2407697-2407716 | None:intergenic | 35.0% |
| TAGCGTACATATCAAGCAAT+CGG | - | chr2_1:2407744-2407763 | None:intergenic | 35.0% | |
| GGAAGAATCCTTCAATATTG+TGG | - | chr2_1:2407899-2407918 | None:intergenic | 35.0% | |
| GGACTGTATAAGTAAGATTC+AGG | - | chr2_1:2408057-2408076 | None:intergenic | 35.0% | |
| TATTTCTCGCAAACAATCTC+CGG | + | chr2_1:2408205-2408224 | Msa0187700:CDS | 35.0% | |
| TGTATTGCAAGTTCGATTGA+CGG | - | chr2_1:2408248-2408267 | None:intergenic | 35.0% | |
| TCGAACTTGCAATACATTCT+AGG | + | chr2_1:2408252-2408271 | Msa0187700:CDS | 35.0% | |
| !!! | AGAAGTGTTTTCATCATTGC+CGG | + | chr2_1:2408347-2408366 | Msa0187700:CDS | 35.0% |
| TGGAATTCGAGAAAGCTTAT+CGG | + | chr2_1:2408430-2408449 | Msa0187700:CDS | 35.0% | |
| !!! | TCAGAGTTCATTTGTTTTGC+CGG | + | chr2_1:2408455-2408474 | Msa0187700:CDS | 35.0% |
| !!! | TTCATTTGTTTTGCCGGAAT+CGG | + | chr2_1:2408461-2408480 | Msa0187700:CDS | 35.0% |
| GTTATATACTCACCGGATTA+TGG | + | chr2_1:2408542-2408561 | Msa0187700:CDS | 35.0% | |
| GTATTTCTCAACATCTTCAG+GGG | - | chr2_1:2408607-2408626 | None:intergenic | 35.0% | |
| GGTATTTCTCAACATCTTCA+GGG | - | chr2_1:2408608-2408627 | None:intergenic | 35.0% | |
| AGGTATTTCTCAACATCTTC+AGG | - | chr2_1:2408609-2408628 | None:intergenic | 35.0% | |
| TGAAGATGTTGAGAAATACC+TGG | + | chr2_1:2408608-2408627 | Msa0187700:CDS | 35.0% | |
| ! | ACTGAAAACGACGGTGTTTT+AGG | - | chr2_1:2406866-2406885 | None:intergenic | 40.0% |
| AGTTGAAGATGGTGAACTGT+TGG | - | chr2_1:2406894-2406913 | None:intergenic | 40.0% | |
| !!! | GATTGAAGGTGTTGTGCTTT+TGG | - | chr2_1:2406927-2406946 | None:intergenic | 40.0% |
| AAAGCACAACACCTTCAATC+AGG | + | chr2_1:2406927-2406946 | Msa0187700:CDS | 40.0% | |
| GTTGTAGCTTTCCTGATTGA+AGG | - | chr2_1:2406941-2406960 | None:intergenic | 40.0% | |
| AAAATGGAACTCCGAAACCT+CGG | + | chr2_1:2406991-2407010 | Msa0187700:CDS | 40.0% | |
| TTTGGCATAATCCGAGGTTT+CGG | - | chr2_1:2407005-2407024 | None:intergenic | 40.0% | |
| ! | AGTTACTTTGGCATAATCCG+AGG | - | chr2_1:2407011-2407030 | None:intergenic | 40.0% |
| GTTTCTGTCGTTGTAGAAGA+TGG | - | chr2_1:2407035-2407054 | None:intergenic | 40.0% | |
| !!! | TGGATAAGTTTTGGAGACGA+TGG | - | chr2_1:2407127-2407146 | None:intergenic | 40.0% |
| CCTGGTTCATGGTTAATATC+TGG | - | chr2_1:2407201-2407220 | None:intergenic | 40.0% | |
| CCAGATATTAACCATGAACC+AGG | + | chr2_1:2407198-2407217 | Msa0187700:CDS | 40.0% | |
| ! | AGAACAGAAAGAAGTTCTGG+AGG | - | chr2_1:2407257-2407276 | None:intergenic | 40.0% |
| ! | TCTTTCTGTTCTTTTGACGG+AGG | + | chr2_1:2407265-2407284 | Msa0187700:CDS | 40.0% |
| TCTCAAATCATCCACAGCAT+CGG | - | chr2_1:2407356-2407375 | None:intergenic | 40.0% | |
| GAGAATTATTGCTGAGTGCA+TGG | + | chr2_1:2407372-2407391 | Msa0187700:CDS | 40.0% | |
| GCTGAGTGCATGGTTAAAAA+CGG | + | chr2_1:2407382-2407401 | Msa0187700:CDS | 40.0% | |
| AGAAAATCCATCGTCGAAGA+AGG | + | chr2_1:2407442-2407461 | Msa0187700:CDS | 40.0% | |
| ! | GAAGGTGAATAAGATGGACT+GGG | + | chr2_1:2407501-2407520 | Msa0187700:CDS | 40.0% |
| AAGTGAAGATTCGATCGATG+AGG | - | chr2_1:2407606-2407625 | None:intergenic | 40.0% | |
| AGCAATCGGAAAATCTTCTC+CGG | - | chr2_1:2407730-2407749 | None:intergenic | 40.0% | |
| ! | TACAATCACTGTGTTGTTGC+CGG | + | chr2_1:2407762-2407781 | Msa0187700:CDS | 40.0% |
| TCCAAATCGGAGGCAAATTT+CGG | + | chr2_1:2407916-2407935 | Msa0187700:CDS | 40.0% | |
| ATCCAACAGTACTCCTGAAA+CGG | + | chr2_1:2408083-2408102 | Msa0187700:CDS | 40.0% | |
| AATACATTCTAGGCGACGAT+TGG | + | chr2_1:2408262-2408281 | Msa0187700:CDS | 40.0% | |
| GGAGAAGGTGAAAAAGTTGA+TGG | + | chr2_1:2408299-2408318 | Msa0187700:CDS | 40.0% | |
| ATCATTGCCGGAAAATCCAA+CGG | + | chr2_1:2408359-2408378 | Msa0187700:CDS | 40.0% | |
| ATCGCGAGTTATATACTCAC+CGG | + | chr2_1:2408535-2408554 | Msa0187700:CDS | 40.0% | |
| ATATACTCACCGGATTATGG+CGG | + | chr2_1:2408545-2408564 | Msa0187700:CDS | 40.0% | |
| ! | ACTGAAAACGACGGTGTTTT+AGG | - | chr2_1:2406866-2406885 | None:intergenic | 40.0% |
| AGTTGAAGATGGTGAACTGT+TGG | - | chr2_1:2406894-2406913 | None:intergenic | 40.0% | |
| !!! | GATTGAAGGTGTTGTGCTTT+TGG | - | chr2_1:2406927-2406946 | None:intergenic | 40.0% |
| AAAGCACAACACCTTCAATC+AGG | + | chr2_1:2406927-2406946 | Msa0187700:CDS | 40.0% | |
| GTTGTAGCTTTCCTGATTGA+AGG | - | chr2_1:2406941-2406960 | None:intergenic | 40.0% | |
| AAAATGGAACTCCGAAACCT+CGG | + | chr2_1:2406991-2407010 | Msa0187700:CDS | 40.0% | |
| TTTGGCATAATCCGAGGTTT+CGG | - | chr2_1:2407005-2407024 | None:intergenic | 40.0% | |
| ! | AGTTACTTTGGCATAATCCG+AGG | - | chr2_1:2407011-2407030 | None:intergenic | 40.0% |
| GTTTCTGTCGTTGTAGAAGA+TGG | - | chr2_1:2407035-2407054 | None:intergenic | 40.0% | |
| !!! | TGGATAAGTTTTGGAGACGA+TGG | - | chr2_1:2407127-2407146 | None:intergenic | 40.0% |
| CCTGGTTCATGGTTAATATC+TGG | - | chr2_1:2407201-2407220 | None:intergenic | 40.0% | |
| CCAGATATTAACCATGAACC+AGG | + | chr2_1:2407198-2407217 | Msa0187700:CDS | 40.0% | |
| ! | AGAACAGAAAGAAGTTCTGG+AGG | - | chr2_1:2407257-2407276 | None:intergenic | 40.0% |
| ! | TCTTTCTGTTCTTTTGACGG+AGG | + | chr2_1:2407265-2407284 | Msa0187700:CDS | 40.0% |
| TCTCAAATCATCCACAGCAT+CGG | - | chr2_1:2407356-2407375 | None:intergenic | 40.0% | |
| GAGAATTATTGCTGAGTGCA+TGG | + | chr2_1:2407372-2407391 | Msa0187700:CDS | 40.0% | |
| GCTGAGTGCATGGTTAAAAA+CGG | + | chr2_1:2407382-2407401 | Msa0187700:CDS | 40.0% | |
| AGAAAATCCATCGTCGAAGA+AGG | + | chr2_1:2407442-2407461 | Msa0187700:CDS | 40.0% | |
| ! | GAAGGTGAATAAGATGGACT+GGG | + | chr2_1:2407501-2407520 | Msa0187700:CDS | 40.0% |
| AAGTGAAGATTCGATCGATG+AGG | - | chr2_1:2407606-2407625 | None:intergenic | 40.0% | |
| AGCAATCGGAAAATCTTCTC+CGG | - | chr2_1:2407730-2407749 | None:intergenic | 40.0% | |
| ! | TACAATCACTGTGTTGTTGC+CGG | + | chr2_1:2407762-2407781 | Msa0187700:CDS | 40.0% |
| TCCAAATCGGAGGCAAATTT+CGG | + | chr2_1:2407916-2407935 | Msa0187700:CDS | 40.0% | |
| ATCCAACAGTACTCCTGAAA+CGG | + | chr2_1:2408083-2408102 | Msa0187700:CDS | 40.0% | |
| AATACATTCTAGGCGACGAT+TGG | + | chr2_1:2408262-2408281 | Msa0187700:CDS | 40.0% | |
| GGAGAAGGTGAAAAAGTTGA+TGG | + | chr2_1:2408299-2408318 | Msa0187700:CDS | 40.0% | |
| ATCATTGCCGGAAAATCCAA+CGG | + | chr2_1:2408359-2408378 | Msa0187700:CDS | 40.0% | |
| ATCGCGAGTTATATACTCAC+CGG | + | chr2_1:2408535-2408554 | Msa0187700:CDS | 40.0% | |
| ATATACTCACCGGATTATGG+CGG | + | chr2_1:2408545-2408564 | Msa0187700:CDS | 40.0% | |
| !! | AGTGCATGGCTCTTTGAAGT+TGG | - | chr2_1:2407087-2407106 | None:intergenic | 45.0% |
| ! | TTCTTTTGACGGAGGAACAC+TGG | + | chr2_1:2407273-2407292 | Msa0187700:CDS | 45.0% |
| !! | GACGATGGATTTTCTCACAG+TGG | - | chr2_1:2407437-2407456 | None:intergenic | 45.0% |
| TGAGGAACGAAGTTTCTCGA+AGG | + | chr2_1:2407483-2407502 | Msa0187700:CDS | 45.0% | |
| CGAAGGTGAATAAGATGGAC+TGG | + | chr2_1:2407500-2407519 | Msa0187700:CDS | 45.0% | |
| TGCTTGAGATTTAACGACGG+TGG | - | chr2_1:2407818-2407837 | None:intergenic | 45.0% | |
| GAAGGATTCTTCCAAATCGG+AGG | + | chr2_1:2407906-2407925 | Msa0187700:CDS | 45.0% | |
| ACCGAAATTTGCCTCCGATT+TGG | - | chr2_1:2407920-2407939 | None:intergenic | 45.0% | |
| AAATCGGAGGCAAATTTCGG+TGG | + | chr2_1:2407919-2407938 | Msa0187700:CDS | 45.0% | |
| !! | GGAGTACTGTTGGATGATTC+TGG | - | chr2_1:2408078-2408097 | None:intergenic | 45.0% |
| GAAAATCCAGTCTCCGTTTC+AGG | - | chr2_1:2408099-2408118 | None:intergenic | 45.0% | |
| ! | GATTTTCCGTTCGAATAGCG+TGG | + | chr2_1:2408112-2408131 | Msa0187700:CDS | 45.0% |
| AATCAGCCACGCTATTCGAA+CGG | - | chr2_1:2408121-2408140 | None:intergenic | 45.0% | |
| ! | CGATTGGCTGTTGAATCACA+TGG | + | chr2_1:2408278-2408297 | Msa0187700:CDS | 45.0% |
| GCTGTTGAATCACATGGAGA+AGG | + | chr2_1:2408284-2408303 | Msa0187700:CDS | 45.0% | |
| ! | GATGGAGAAGTACGAAAGAG+TGG | + | chr2_1:2408317-2408336 | Msa0187700:CDS | 45.0% |
| TCTTCGCGAAATTCCGATTC+CGG | - | chr2_1:2408477-2408496 | None:intergenic | 45.0% | |
| TATACTCACCGGATTATGGC+GGG | + | chr2_1:2408546-2408565 | Msa0187700:CDS | 45.0% | |
| TAACAGTTCCCGCCATAATC+CGG | - | chr2_1:2408557-2408576 | None:intergenic | 45.0% | |
| CTGGTGAATCTCTTCTGTGA+GGG | + | chr2_1:2408627-2408646 | Msa0187700:CDS | 45.0% | |
| !! | AGTGCATGGCTCTTTGAAGT+TGG | - | chr2_1:2407087-2407106 | None:intergenic | 45.0% |
| ! | TTCTTTTGACGGAGGAACAC+TGG | + | chr2_1:2407273-2407292 | Msa0187700:CDS | 45.0% |
| !! | GACGATGGATTTTCTCACAG+TGG | - | chr2_1:2407437-2407456 | None:intergenic | 45.0% |
| TGAGGAACGAAGTTTCTCGA+AGG | + | chr2_1:2407483-2407502 | Msa0187700:CDS | 45.0% | |
| CGAAGGTGAATAAGATGGAC+TGG | + | chr2_1:2407500-2407519 | Msa0187700:CDS | 45.0% | |
| TGCTTGAGATTTAACGACGG+TGG | - | chr2_1:2407818-2407837 | None:intergenic | 45.0% | |
| GAAGGATTCTTCCAAATCGG+AGG | + | chr2_1:2407906-2407925 | Msa0187700:CDS | 45.0% | |
| ACCGAAATTTGCCTCCGATT+TGG | - | chr2_1:2407920-2407939 | None:intergenic | 45.0% | |
| AAATCGGAGGCAAATTTCGG+TGG | + | chr2_1:2407919-2407938 | Msa0187700:CDS | 45.0% | |
| !! | GGAGTACTGTTGGATGATTC+TGG | - | chr2_1:2408078-2408097 | None:intergenic | 45.0% |
| GAAAATCCAGTCTCCGTTTC+AGG | - | chr2_1:2408099-2408118 | None:intergenic | 45.0% | |
| ! | GATTTTCCGTTCGAATAGCG+TGG | + | chr2_1:2408112-2408131 | Msa0187700:CDS | 45.0% |
| AATCAGCCACGCTATTCGAA+CGG | - | chr2_1:2408121-2408140 | None:intergenic | 45.0% | |
| ! | CGATTGGCTGTTGAATCACA+TGG | + | chr2_1:2408278-2408297 | Msa0187700:CDS | 45.0% |
| GCTGTTGAATCACATGGAGA+AGG | + | chr2_1:2408284-2408303 | Msa0187700:CDS | 45.0% | |
| ! | GATGGAGAAGTACGAAAGAG+TGG | + | chr2_1:2408317-2408336 | Msa0187700:CDS | 45.0% |
| TCTTCGCGAAATTCCGATTC+CGG | - | chr2_1:2408477-2408496 | None:intergenic | 45.0% | |
| TATACTCACCGGATTATGGC+GGG | + | chr2_1:2408546-2408565 | Msa0187700:CDS | 45.0% | |
| TAACAGTTCCCGCCATAATC+CGG | - | chr2_1:2408557-2408576 | None:intergenic | 45.0% | |
| CTGGTGAATCTCTTCTGTGA+GGG | + | chr2_1:2408627-2408646 | Msa0187700:CDS | 45.0% | |
| GAAGGATTCAGAGTCCAAGC+AGG | - | chr2_1:2407224-2407243 | None:intergenic | 50.0% | |
| GACTCTGAATCCTTCTCCGT+CGG | + | chr2_1:2407229-2407248 | Msa0187700:CDS | 50.0% | |
| !! | AGAAGTTCTGGAGGATCCGA+CGG | - | chr2_1:2407248-2407267 | None:intergenic | 50.0% |
| AGGCGGTTAAGATCTCAGTG+AGG | + | chr2_1:2407557-2407576 | Msa0187700:CDS | 50.0% | |
| !! | CTCCGTTTCAGGAGTACTGT+TGG | - | chr2_1:2408088-2408107 | None:intergenic | 50.0% |
| AGTACTCCTGAAACGGAGAC+TGG | + | chr2_1:2408090-2408109 | Msa0187700:CDS | 50.0% | |
| ! | AGAAGTACGAAAGAGTGGCG+TGG | + | chr2_1:2408322-2408341 | Msa0187700:CDS | 50.0% |
| GAAGTACGAAAGAGTGGCGT+GGG | + | chr2_1:2408323-2408342 | Msa0187700:CDS | 50.0% | |
| AAGTACGAAAGAGTGGCGTG+GGG | + | chr2_1:2408324-2408343 | Msa0187700:CDS | 50.0% | |
| ATTGCCGGAAAATCCAACGG+CGG | + | chr2_1:2408362-2408381 | Msa0187700:CDS | 50.0% | |
| CCTCACAGAAGAGATTCACC+AGG | - | chr2_1:2408629-2408648 | None:intergenic | 50.0% | |
| CCTGGTGAATCTCTTCTGTG+AGG | + | chr2_1:2408626-2408645 | Msa0187700:CDS | 50.0% | |
| GAAGGATTCAGAGTCCAAGC+AGG | - | chr2_1:2407224-2407243 | None:intergenic | 50.0% | |
| GACTCTGAATCCTTCTCCGT+CGG | + | chr2_1:2407229-2407248 | Msa0187700:CDS | 50.0% | |
| !! | AGAAGTTCTGGAGGATCCGA+CGG | - | chr2_1:2407248-2407267 | None:intergenic | 50.0% |
| AGGCGGTTAAGATCTCAGTG+AGG | + | chr2_1:2407557-2407576 | Msa0187700:CDS | 50.0% | |
| !! | CTCCGTTTCAGGAGTACTGT+TGG | - | chr2_1:2408088-2408107 | None:intergenic | 50.0% |
| AGTACTCCTGAAACGGAGAC+TGG | + | chr2_1:2408090-2408109 | Msa0187700:CDS | 50.0% | |
| ! | AGAAGTACGAAAGAGTGGCG+TGG | + | chr2_1:2408322-2408341 | Msa0187700:CDS | 50.0% |
| GAAGTACGAAAGAGTGGCGT+GGG | + | chr2_1:2408323-2408342 | Msa0187700:CDS | 50.0% | |
| AAGTACGAAAGAGTGGCGTG+GGG | + | chr2_1:2408324-2408343 | Msa0187700:CDS | 50.0% | |
| ATTGCCGGAAAATCCAACGG+CGG | + | chr2_1:2408362-2408381 | Msa0187700:CDS | 50.0% | |
| CCTCACAGAAGAGATTCACC+AGG | - | chr2_1:2408629-2408648 | None:intergenic | 50.0% | |
| CCTGGTGAATCTCTTCTGTG+AGG | + | chr2_1:2408626-2408645 | Msa0187700:CDS | 50.0% | |
| GAGCTCGAGTAACGAGTGCA+TGG | - | chr2_1:2407101-2407120 | None:intergenic | 55.0% | |
| AACCATGAACCAGGCCTGCT+TGG | + | chr2_1:2407207-2407226 | Msa0187700:CDS | 55.0% | |
| ATTCAGAGTCCAAGCAGGCC+TGG | - | chr2_1:2407219-2407238 | None:intergenic | 55.0% | |
| AGACGATATTCGCGCTGCAG+AGG | + | chr2_1:2407300-2407319 | Msa0187700:CDS | 55.0% | |
| ACGCGTTTCTTCCGATGCTG+TGG | + | chr2_1:2407342-2407361 | Msa0187700:CDS | 55.0% | |
| TCAGGCAACGGTGACTTCGA+CGG | - | chr2_1:2408039-2408058 | None:intergenic | 55.0% | |
| AAACAATCTCCGGCACGTGG+TGG | + | chr2_1:2408215-2408234 | Msa0187700:CDS | 55.0% | |
| ! | ATCGCCGCCGTTGGATTTTC+CGG | - | chr2_1:2408369-2408388 | None:intergenic | 55.0% |
| AAATCCAACGGCGGCGATGA+CGG | + | chr2_1:2408371-2408390 | Msa0187700:CDS | 55.0% | |
| GAGCTCGAGTAACGAGTGCA+TGG | - | chr2_1:2407101-2407120 | None:intergenic | 55.0% | |
| AACCATGAACCAGGCCTGCT+TGG | + | chr2_1:2407207-2407226 | Msa0187700:CDS | 55.0% | |
| ATTCAGAGTCCAAGCAGGCC+TGG | - | chr2_1:2407219-2407238 | None:intergenic | 55.0% | |
| AGACGATATTCGCGCTGCAG+AGG | + | chr2_1:2407300-2407319 | Msa0187700:CDS | 55.0% | |
| ACGCGTTTCTTCCGATGCTG+TGG | + | chr2_1:2407342-2407361 | Msa0187700:CDS | 55.0% | |
| TCAGGCAACGGTGACTTCGA+CGG | - | chr2_1:2408039-2408058 | None:intergenic | 55.0% | |
| AAACAATCTCCGGCACGTGG+TGG | + | chr2_1:2408215-2408234 | Msa0187700:CDS | 55.0% | |
| ! | ATCGCCGCCGTTGGATTTTC+CGG | - | chr2_1:2408369-2408388 | None:intergenic | 55.0% |
| AAATCCAACGGCGGCGATGA+CGG | + | chr2_1:2408371-2408390 | Msa0187700:CDS | 55.0% | |
| GTCCAAGCAGGCCTGGTTCA+TGG | - | chr2_1:2407212-2407231 | None:intergenic | 60.0% | |
| TCTGGAGGATCCGACGGAGA+AGG | - | chr2_1:2407242-2407261 | None:intergenic | 60.0% | |
| TCAGTGAGGACGCTCTTCGC+TGG | + | chr2_1:2407571-2407590 | Msa0187700:CDS | 60.0% | |
| AACGGTGACTTCGACGGTGG+AGG | - | chr2_1:2408033-2408052 | None:intergenic | 60.0% | |
| CGCAAACAATCTCCGGCACG+TGG | + | chr2_1:2408212-2408231 | Msa0187700:CDS | 60.0% | |
| GTCCAAGCAGGCCTGGTTCA+TGG | - | chr2_1:2407212-2407231 | None:intergenic | 60.0% | |
| TCTGGAGGATCCGACGGAGA+AGG | - | chr2_1:2407242-2407261 | None:intergenic | 60.0% | |
| TCAGTGAGGACGCTCTTCGC+TGG | + | chr2_1:2407571-2407590 | Msa0187700:CDS | 60.0% | |
| AACGGTGACTTCGACGGTGG+AGG | - | chr2_1:2408033-2408052 | None:intergenic | 60.0% | |
| CGCAAACAATCTCCGGCACG+TGG | + | chr2_1:2408212-2408231 | Msa0187700:CDS | 60.0% | |
| GGACGCTCTTCGCTGGAGAG+AGG | + | chr2_1:2407578-2407597 | Msa0187700:CDS | 65.0% | |
| GGCAACGGTGACTTCGACGG+TGG | - | chr2_1:2408036-2408055 | None:intergenic | 65.0% | |
| !! | TCTCCGGCACGTGGTGGACA+AGG | + | chr2_1:2408221-2408240 | Msa0187700:CDS | 65.0% |
| GGACCTTGTCCACCACGTGC+CGG | - | chr2_1:2408227-2408246 | None:intergenic | 65.0% | |
| GGACGCTCTTCGCTGGAGAG+AGG | + | chr2_1:2407578-2407597 | Msa0187700:CDS | 65.0% | |
| GGCAACGGTGACTTCGACGG+TGG | - | chr2_1:2408036-2408055 | None:intergenic | 65.0% | |
| !! | TCTCCGGCACGTGGTGGACA+AGG | + | chr2_1:2408221-2408240 | Msa0187700:CDS | 65.0% |
| GGACCTTGTCCACCACGTGC+CGG | - | chr2_1:2408227-2408246 | None:intergenic | 65.0% | |
| ! | TCCAACGGCGGCGATGACGG+TGG | + | chr2_1:2408374-2408393 | Msa0187700:CDS | 70.0% |
| ! | GGCGGCGATGACGGTGGCAA+AGG | + | chr2_1:2408380-2408399 | Msa0187700:CDS | 70.0% |
| ! | TCCAACGGCGGCGATGACGG+TGG | + | chr2_1:2408374-2408393 | Msa0187700:CDS | 70.0% |
| ! | GGCGGCGATGACGGTGGCAA+AGG | + | chr2_1:2408380-2408399 | Msa0187700:CDS | 70.0% |
| GCCACCGTCATCGCCGCCGT+TGG | - | chr2_1:2408378-2408397 | None:intergenic | 75.0% | |
| GCCACCGTCATCGCCGCCGT+TGG | - | chr2_1:2408378-2408397 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 2406842 | 2408677 | 2406842 | ID=Msa0187700;Name=Msa0187700 |
| chr2_1 | mRNA | 2406842 | 2408677 | 2406842 | ID=Msa0187700-mRNA-1;Parent=Msa0187700;Name=Msa0187700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|611 |
| chr2_1 | exon | 2406842 | 2408677 | 2406842 | ID=Msa0187700-mRNA-1:exon:1154;Parent=Msa0187700-mRNA-1 |
| chr2_1 | CDS | 2406842 | 2408677 | 2406842 | ID=Msa0187700-mRNA-1:cds;Parent=Msa0187700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
