Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696100 | XP_003608194.2 | 98.529 | 544 | 8 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696100 | sp|Q8GWA1|NDA1_ARATH | 68.980 | 490 | 150 | 1 | 54 | 543 | 23 | 510 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696100 | G7JQS9 | 98.529 | 544 | 8 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0696100 | 0.821155 | 4.692687e-53 | -8.615850e-47 |
| Msa0004480 | Msa0696100 | 0.805024 | 1.629596e-49 | -8.615850e-47 |
| Msa0011050 | Msa0696100 | 0.852598 | 4.155225e-61 | -8.615850e-47 |
| Msa0043850 | Msa0696100 | 0.813335 | 2.696605e-51 | -8.615850e-47 |
| Msa0048390 | Msa0696100 | 0.829333 | 5.460379e-55 | -8.615850e-47 |
| Msa0059900 | Msa0696100 | 0.839823 | 1.258004e-57 | -8.615850e-47 |
| Msa0060070 | Msa0696100 | 0.826499 | 2.623952e-54 | -8.615850e-47 |
| Msa0061220 | Msa0696100 | 0.812815 | 3.507077e-51 | -8.615850e-47 |
| Msa0064140 | Msa0696100 | 0.806618 | 7.535922e-50 | -8.615850e-47 |
| Msa0090090 | Msa0696100 | 0.808878 | 2.494618e-50 | -8.615850e-47 |
| Msa0090380 | Msa0696100 | 0.824348 | 8.473210e-54 | -8.615850e-47 |
| Msa0090510 | Msa0696100 | 0.801677 | 8.044394e-49 | -8.615850e-47 |
| Msa0094710 | Msa0696100 | 0.810384 | 1.183718e-50 | -8.615850e-47 |
| Msa0104810 | Msa0696100 | 0.830974 | 2.170288e-55 | -8.615850e-47 |
| Msa0613150 | Msa0696100 | 0.948167 | 1.611638e-106 | -8.615850e-47 |
| Msa0614380 | Msa0696100 | 0.821234 | 4.500889e-53 | -8.615850e-47 |
| Msa0635270 | Msa0696100 | 0.821742 | 3.433869e-53 | -8.615850e-47 |
| Msa0641130 | Msa0696100 | 0.836123 | 1.125192e-56 | -8.615850e-47 |
| Msa0645560 | Msa0696100 | 0.800728 | 1.257949e-48 | -8.615850e-47 |
| Msa0662580 | Msa0696100 | 0.812450 | 4.214806e-51 | -8.615850e-47 |
| Msa0679670 | Msa0696100 | 0.813452 | 2.541586e-51 | -8.615850e-47 |
| Msa0685240 | Msa0696100 | 0.827282 | 1.704924e-54 | -8.615850e-47 |
| Msa0696100 | Msa0697590 | 0.825719 | 4.021372e-54 | -8.615850e-47 |
| Msa0696100 | Msa0743510 | 0.803114 | 4.068863e-49 | -8.615850e-47 |
| Msa0696100 | Msa0743870 | 0.827174 | 1.810204e-54 | -8.615850e-47 |
| Msa0696100 | Msa0772740 | 0.809461 | 1.870394e-50 | -8.615850e-47 |
| Msa0696100 | Msa0787790 | 0.850155 | 2.039195e-60 | -8.615850e-47 |
| Msa0696100 | Msa0807670 | 0.820109 | 8.158102e-53 | -8.615850e-47 |
| Msa0696100 | Msa0807680 | 0.807707 | 4.432081e-50 | -8.615850e-47 |
| Msa0696100 | Msa0852790 | 0.811475 | 6.873878e-51 | -8.615850e-47 |
| Msa0696100 | Msa0863720 | 0.827013 | 1.977830e-54 | -8.615850e-47 |
| Msa0696100 | Msa0863990 | 0.827676 | 1.371730e-54 | -8.615850e-47 |
| Msa0696100 | Msa0865970 | 0.807660 | 4.535439e-50 | -8.615850e-47 |
| Msa0696100 | Msa0866070 | 0.807710 | 4.425990e-50 | -8.615850e-47 |
| Msa0696100 | Msa0929290 | 0.916612 | 1.444475e-85 | -8.615850e-47 |
| Msa0696100 | Msa0945130 | 0.829741 | 4.344172e-55 | -8.615850e-47 |
| Msa0696100 | Msa0968050 | 0.843101 | 1.723677e-58 | -8.615850e-47 |
| Msa0696100 | Msa1011250 | 0.810759 | 9.826125e-51 | -8.615850e-47 |
| Msa0696100 | Msa1031460 | 0.837442 | 5.185952e-57 | -8.615850e-47 |
| Msa0696100 | Msa1043120 | 0.808615 | 2.838966e-50 | -8.615850e-47 |
| Msa0696100 | Msa1059670 | 0.811348 | 7.321886e-51 | -8.615850e-47 |
| Msa0696100 | Msa1069890 | 0.810393 | 1.178660e-50 | -8.615850e-47 |
| Msa0696100 | Msa1070540 | 0.845987 | 2.881562e-59 | -8.615850e-47 |
| Msa0696100 | Msa1082520 | 0.803288 | 3.744240e-49 | -8.615850e-47 |
| Msa0696100 | Msa1089190 | 0.842703 | 2.198792e-58 | -8.615850e-47 |
| Msa0696100 | Msa1101240 | 0.846138 | 2.622196e-59 | -8.615850e-47 |
| Msa0696100 | Msa1131790 | 0.830929 | 2.226316e-55 | -8.615850e-47 |
| Msa0696100 | Msa1159170 | 0.808669 | 2.765189e-50 | -8.615850e-47 |
| Msa0696100 | Msa1208990 | 0.812830 | 3.480242e-51 | -8.615850e-47 |
| Msa0696100 | Msa1212050 | 0.801379 | 9.256759e-49 | -8.615850e-47 |
| Msa0696100 | Msa1212130 | 0.813142 | 2.973537e-51 | -8.615850e-47 |
| Msa0696100 | Msa1214170 | 0.849787 | 2.584001e-60 | -8.615850e-47 |
| Msa0696100 | Msa1221240 | 0.802976 | 4.344863e-49 | -8.615850e-47 |
| Msa0696100 | Msa1225580 | 0.859248 | 4.716934e-63 | -8.615850e-47 |
| Msa0696100 | Msa1236440 | 0.802451 | 5.576885e-49 | -8.615850e-47 |
| Msa0696100 | Msa1246780 | 0.827736 | 1.326633e-54 | -8.615850e-47 |
| Msa0696100 | Msa1246790 | 0.835939 | 1.253279e-56 | -8.615850e-47 |
| Msa0696100 | Msa1256060 | 0.806340 | 8.626584e-50 | -8.615850e-47 |
| Msa0696100 | Msa1259860 | 0.817368 | 3.418628e-52 | -8.615850e-47 |
| Msa0696100 | Msa1260060 | 0.801497 | 8.757099e-49 | -8.615850e-47 |
| Msa0696100 | Msa1260680 | 0.821704 | 3.503840e-53 | -8.615850e-47 |
| Msa0696100 | Msa1272010 | 0.807052 | 6.100826e-50 | -8.615850e-47 |
| Msa0696100 | Msa1277670 | 0.803585 | 3.249280e-49 | -8.615850e-47 |
| Msa0696100 | Msa1285200 | 0.803587 | 3.246913e-49 | -8.615850e-47 |
| Msa0696100 | Msa1286210 | 0.819909 | 9.068507e-53 | -8.615850e-47 |
| Msa0696100 | Msa1286220 | 0.833990 | 3.882746e-56 | -8.615850e-47 |
| Msa0696100 | Msa1296240 | 0.810627 | 1.049473e-50 | -8.615850e-47 |
| Msa0696100 | Msa1353890 | 0.805361 | 1.385191e-49 | -8.615850e-47 |
| Msa0696100 | Msa1355510 | 0.855444 | 6.281434e-62 | -8.615850e-47 |
| Msa0696100 | Msa1360020 | 0.846016 | 2.830042e-59 | -8.615850e-47 |
| Msa0696100 | Msa1364080 | 0.842269 | 2.866763e-58 | -8.615850e-47 |
| Msa0696100 | Msa1367530 | 0.837867 | 4.034518e-57 | -8.615850e-47 |
| Msa0696100 | Msa1386890 | 0.804305 | 2.302682e-49 | -8.615850e-47 |
| Msa0696100 | Msa1390290 | 0.808705 | 2.715551e-50 | -8.615850e-47 |
| Msa0696100 | Msa1397390 | 0.819721 | 1.001088e-52 | -8.615850e-47 |
| Msa0696100 | Msa1398900 | 0.802036 | 6.788142e-49 | -8.615850e-47 |
| Msa0696100 | Msa1407880 | 0.819403 | 1.182918e-52 | -8.615850e-47 |
| Msa0696100 | Msa1420930 | 0.805810 | 1.115255e-49 | -8.615850e-47 |
| Msa0696100 | Msa1420940 | 0.807165 | 5.775639e-50 | -8.615850e-47 |
| Msa0696100 | Msa1424580 | 0.819034 | 1.435341e-52 | -8.615850e-47 |
| Msa0696100 | Msa1433410 | 0.830373 | 3.046564e-55 | -8.615850e-47 |
| Msa0696100 | Msa1443620 | 0.819728 | 9.970122e-53 | -8.615850e-47 |
| Msa0136630 | Msa0696100 | 0.809002 | 2.346780e-50 | -8.615850e-47 |
| Msa0137560 | Msa0696100 | 0.805186 | 1.507154e-49 | -8.615850e-47 |
| Msa0137860 | Msa0696100 | 0.827567 | 1.456646e-54 | -8.615850e-47 |
| Msa0137980 | Msa0696100 | 0.801416 | 9.096807e-49 | -8.615850e-47 |
| Msa0151220 | Msa0696100 | 0.833805 | 4.319335e-56 | -8.615850e-47 |
| Msa0170770 | Msa0696100 | 0.814819 | 1.268581e-51 | -8.615850e-47 |
| Msa0176260 | Msa0696100 | 0.810626 | 1.049555e-50 | -8.615850e-47 |
| Msa0187310 | Msa0696100 | 0.818536 | 1.862641e-52 | -8.615850e-47 |
| Msa0187700 | Msa0696100 | 0.800306 | 1.533445e-48 | -8.615850e-47 |
| Msa0224130 | Msa0696100 | 0.843769 | 1.143217e-58 | -8.615850e-47 |
| Msa0225850 | Msa0696100 | 0.806456 | 8.153983e-50 | -8.615850e-47 |
| Msa0364790 | Msa0696100 | 0.812081 | 5.073377e-51 | -8.615850e-47 |
| Msa0377840 | Msa0696100 | 0.800491 | 1.405807e-48 | -8.615850e-47 |
| Msa0380600 | Msa0696100 | 0.814938 | 1.194128e-51 | -8.615850e-47 |
| Msa0386010 | Msa0696100 | 0.801924 | 7.156663e-49 | -8.615850e-47 |
| Msa0389900 | Msa0696100 | 0.829777 | 4.257451e-55 | -8.615850e-47 |
| Msa0408340 | Msa0696100 | 0.804670 | 1.932030e-49 | -8.615850e-47 |
| Msa0426560 | Msa0696100 | 0.805798 | 1.121591e-49 | -8.615850e-47 |
| Msa0430240 | Msa0696100 | 0.815794 | 7.703478e-52 | -8.615850e-47 |
| Msa0456770 | Msa0696100 | 0.801110 | 1.050781e-48 | -8.615850e-47 |
| Msa0259440 | Msa0696100 | 0.825232 | 5.243219e-54 | -8.615850e-47 |
| Msa0259580 | Msa0696100 | 0.807365 | 5.239202e-50 | -8.615850e-47 |
| Msa0260520 | Msa0696100 | 0.812784 | 3.562173e-51 | -8.615850e-47 |
| Msa0260530 | Msa0696100 | 0.813412 | 2.593407e-51 | -8.615850e-47 |
| Msa0264680 | Msa0696100 | 0.852119 | 5.689886e-61 | -8.615850e-47 |
| Msa0265270 | Msa0696100 | 0.842544 | 2.423730e-58 | -8.615850e-47 |
| Msa0276430 | Msa0696100 | 0.825337 | 4.952614e-54 | -8.615850e-47 |
| Msa0296910 | Msa0696100 | 0.802307 | 5.970334e-49 | -8.615850e-47 |
| Msa0302730 | Msa0696100 | 0.858748 | 6.657902e-63 | -8.615850e-47 |
| Msa0305620 | Msa0696100 | 0.808633 | 2.814256e-50 | -8.615850e-47 |
| Msa0316470 | Msa0696100 | 0.808266 | 3.369964e-50 | -8.615850e-47 |
| Msa0484800 | Msa0696100 | 0.836165 | 1.097932e-56 | -8.615850e-47 |
| Msa0524330 | Msa0696100 | 0.846344 | 2.303890e-59 | -8.615850e-47 |
| Msa0524440 | Msa0696100 | 0.838318 | 3.087265e-57 | -8.615850e-47 |
| Msa0542530 | Msa0696100 | 0.801785 | 7.642646e-49 | -8.615850e-47 |
| Msa0545050 | Msa0696100 | 0.833907 | 4.072300e-56 | -8.615850e-47 |
| Msa0558390 | Msa0696100 | 0.959907 | 5.813681e-118 | -8.615850e-47 |
| Msa0584580 | Msa0696100 | 0.809541 | 1.798597e-50 | -8.615850e-47 |
| Msa0584600 | Msa0696100 | 0.829043 | 6.418574e-55 | -8.615850e-47 |
| Msa0588710 | Msa0696100 | 0.831765 | 1.386275e-55 | -8.615850e-47 |
| Msa0590390 | Msa0696100 | 0.807955 | 3.925758e-50 | -8.615850e-47 |
| Msa0600590 | Msa0696100 | 0.835976 | 1.225869e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696100 | MtrunA17_Chr4g0048041 | 98.529 | 544 | 8 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1110 |
| Msa0696100 | MtrunA17_Chr5g0430321 | 75.885 | 452 | 109 | 0 | 92 | 543 | 50 | 501 | 0.0 | 722 |
| Msa0696100 | MtrunA17_Chr3g0105191 | 68.548 | 496 | 150 | 3 | 54 | 543 | 9 | 504 | 0.0 | 685 |
| Msa0696100 | MtrunA17_Chr4g0048381 | 38.611 | 360 | 200 | 9 | 105 | 449 | 51 | 404 | 5.76e-72 | 240 |
| Msa0696100 | MtrunA17_Chr4g0048381 | 34.167 | 120 | 70 | 3 | 428 | 543 | 464 | 578 | 2.50e-12 | 69.3 |
| Msa0696100 | MtrunA17_Chr2g0281111 | 39.595 | 346 | 193 | 8 | 105 | 440 | 51 | 390 | 1.10e-71 | 239 |
| Msa0696100 | MtrunA17_Chr2g0281111 | 36.667 | 120 | 67 | 3 | 428 | 543 | 464 | 578 | 2.20e-14 | 75.9 |
| Msa0696100 | MtrunA17_Chr4g0022591 | 36.579 | 380 | 220 | 9 | 81 | 449 | 37 | 406 | 3.54e-67 | 227 |
| Msa0696100 | MtrunA17_Chr4g0022591 | 36.667 | 120 | 67 | 3 | 428 | 543 | 463 | 577 | 2.10e-15 | 79.3 |
| Msa0696100 | MtrunA17_Chr4g0022601 | 35.150 | 367 | 200 | 10 | 105 | 455 | 44 | 388 | 2.15e-64 | 220 |
| Msa0696100 | MtrunA17_Chr4g0022601 | 35.000 | 120 | 69 | 3 | 428 | 543 | 455 | 569 | 7.31e-13 | 71.2 |
| Msa0696100 | MtrunA17_Chr8g0384841 | 24.086 | 465 | 280 | 16 | 105 | 532 | 84 | 512 | 1.41e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696100 | AT1G07180.1 | 68.980 | 490 | 150 | 1 | 54 | 543 | 23 | 510 | 0.0 | 691 |
| Msa0696100 | AT2G29990.1 | 72.848 | 453 | 123 | 0 | 91 | 543 | 56 | 508 | 0.0 | 688 |
| Msa0696100 | AT4G21490.1 | 35.765 | 425 | 226 | 11 | 46 | 455 | 3 | 395 | 3.86e-66 | 225 |
| Msa0696100 | AT4G21490.1 | 32.231 | 121 | 73 | 3 | 427 | 543 | 465 | 580 | 1.21e-11 | 67.8 |
| Msa0696100 | AT4G21490.2 | 35.765 | 425 | 225 | 11 | 46 | 455 | 3 | 394 | 6.22e-66 | 224 |
| Msa0696100 | AT4G21490.2 | 32.231 | 121 | 73 | 3 | 427 | 543 | 464 | 579 | 1.21e-11 | 67.8 |
| Msa0696100 | AT4G28220.2 | 38.576 | 337 | 188 | 9 | 109 | 434 | 52 | 380 | 1.45e-65 | 221 |
| Msa0696100 | AT4G28220.1 | 38.576 | 337 | 188 | 9 | 109 | 434 | 52 | 380 | 3.98e-65 | 222 |
| Msa0696100 | AT4G28220.1 | 36.667 | 120 | 67 | 3 | 428 | 543 | 457 | 571 | 2.77e-13 | 72.8 |
| Msa0696100 | AT4G05020.1 | 41.745 | 321 | 175 | 7 | 105 | 417 | 57 | 373 | 1.49e-63 | 218 |
| Msa0696100 | AT4G05020.1 | 32.500 | 120 | 72 | 3 | 428 | 543 | 468 | 582 | 3.10e-11 | 66.6 |
| Msa0696100 | AT4G05020.2 | 41.745 | 321 | 175 | 7 | 105 | 417 | 57 | 373 | 3.79e-63 | 218 |
| Msa0696100 | AT2G20800.1 | 36.193 | 373 | 200 | 8 | 103 | 461 | 60 | 408 | 9.20e-57 | 200 |
| Msa0696100 | AT2G20800.1 | 37.500 | 120 | 66 | 3 | 428 | 543 | 468 | 582 | 1.34e-14 | 77.0 |
| Msa0696100 | AT5G08740.1 | 24.675 | 539 | 303 | 22 | 33 | 530 | 20 | 496 | 4.82e-19 | 90.9 |
Find 130 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTCTGTTCTTTAATTC+TGG | 0.169594 | 4_4:+65908038 | None:intergenic |
| GTAGAGTTGTTCAACAAAAT+TGG | 0.171502 | 4_4:-65906009 | Msa0696100:CDS |
| TCTATAACTCTTTGTGTGTT+AGG | 0.192700 | 4_4:+65907967 | None:intergenic |
| GCTGCTTGTCGGTTTCTTAA+AGG | 0.225722 | 4_4:-65907841 | Msa0696100:CDS |
| CAGCAGGATAGGTTGAATTT+TGG | 0.230901 | 4_4:-65905576 | Msa0696100:exon |
| CATCACTCAAAACTATCTTT+TGG | 0.254195 | 4_4:+65906669 | None:intergenic |
| TAGATCAACAAGTGCCTTAT+AGG | 0.262816 | 4_4:+65905891 | None:intergenic |
| AGAAGATCAGGTGTTGCTTT+TGG | 0.283784 | 4_4:-65908156 | Msa0696100:CDS |
| CCCTTGATACCAAAAGTTAA+AGG | 0.285822 | 4_4:+65907363 | None:intergenic |
| TTTCAGAAAGCATCAGATTA+AGG | 0.287447 | 4_4:+65907274 | None:intergenic |
| GTGTTGGTACCCTTGAATTC+AGG | 0.309821 | 4_4:-65907738 | Msa0696100:CDS |
| GGAGCTGAGCCTTTAACTTT+TGG | 0.313907 | 4_4:-65907372 | Msa0696100:CDS |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.321151 | 4_4:-65906637 | Msa0696100:CDS |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 4_4:-65906629 | Msa0696100:CDS |
| ATTCTGGAAATATACGAAAA+TGG | 0.331142 | 4_4:+65908054 | None:intergenic |
| CTGCTTGTCGGTTTCTTAAA+GGG | 0.336052 | 4_4:-65907840 | Msa0696100:CDS |
| TGTATCATGCTCAAGAAATA+AGG | 0.343406 | 4_4:-65907308 | Msa0696100:CDS |
| GCAAAGGGATTGTCACTTGC+TGG | 0.349729 | 4_4:-65905713 | Msa0696100:CDS |
| TAGAGTTGTTCAACAAAATT+GGG | 0.356038 | 4_4:-65906008 | Msa0696100:CDS |
| ACAATTTGTGTATAAACATA+TGG | 0.358161 | 4_4:-65905935 | Msa0696100:CDS |
| CTGCTGCATTGTGTAGTTAT+TGG | 0.365839 | 4_4:-65907097 | Msa0696100:CDS |
| CTATAACTCTTTGTGTGTTA+GGG | 0.367616 | 4_4:+65907968 | None:intergenic |
| TGTCATATGCAACTTTGAAT+TGG | 0.368204 | 4_4:+65907412 | None:intergenic |
| GGCATCAGTAGGTGCCTATA+AGG | 0.371076 | 4_4:-65905905 | Msa0696100:CDS |
| TTCTTTCTAGCTTCCTGCAC+TGG | 0.393614 | 4_4:-65907655 | Msa0696100:CDS |
| TGAAGTTCCTTATGGTCTCT+TGG | 0.393992 | 4_4:-65906642 | Msa0696100:CDS |
| ATCTTACACGTGTGCTGAGC+TGG | 0.396198 | 4_4:-65905658 | Msa0696100:CDS |
| GTCTGGAGTTTGTCTTATGC+GGG | 0.399394 | 4_4:-65906714 | Msa0696100:CDS |
| GTGTGCTGAGCTGGAGGAAT+AGG | 0.406321 | 4_4:-65905649 | Msa0696100:CDS |
| ATGGGAAGGTAAGGAGCCTT+TGG | 0.406390 | 4_4:+65908086 | None:intergenic |
| GTACCGGTTGGGCTGCTTGT+CGG | 0.407943 | 4_4:-65907852 | Msa0696100:CDS |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 4_4:-65906407 | Msa0696100:CDS |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 4_4:-65906623 | Msa0696100:CDS |
| TCCTTACCTTCCCATGTAGA+TGG | 0.433038 | 4_4:-65908078 | Msa0696100:CDS |
| TGATACAGAATTGGTGTTGA+TGG | 0.434223 | 4_4:-65906461 | Msa0696100:intron |
| CTGAATCTTCCAAGCTCTCC+AGG | 0.437706 | 4_4:-65906578 | Msa0696100:CDS |
| GTGGAAGATGTCTTTGCACT+TGG | 0.442231 | 4_4:-65906419 | Msa0696100:CDS |
| GATGGAACTGAAGTTCCTTA+TGG | 0.446289 | 4_4:-65906650 | Msa0696100:CDS |
| AACAAAATTGGGAAACAGAA+TGG | 0.446795 | 4_4:-65905997 | Msa0696100:CDS |
| TACCTTCCACCTGGAGAGCT+TGG | 0.449786 | 4_4:+65906569 | None:intergenic |
| CAGCAACAGACCTGAATTCA+AGG | 0.450864 | 4_4:+65907728 | None:intergenic |
| TCTAGTCCTGCATATCTTGT+CGG | 0.452195 | 4_4:+65907916 | None:intergenic |
| AGAGTGGTTGTTCTCGGTAC+CGG | 0.453887 | 4_4:-65907868 | Msa0696100:CDS |
| ACGAAAATGGTCCATCTACA+TGG | 0.454099 | 4_4:+65908067 | None:intergenic |
| GGTTGTTCTCGGTACCGGTT+GGG | 0.456139 | 4_4:-65907863 | Msa0696100:CDS |
| AGCTAGAAAGAAGTATGAGT+TGG | 0.457476 | 4_4:+65907666 | None:intergenic |
| TGGAAGATGTCTTTGCACTT+GGG | 0.463774 | 4_4:-65906418 | Msa0696100:CDS |
| GTTATTGGAGGTGGTCCTAC+AGG | 0.464952 | 4_4:-65907082 | Msa0696100:CDS |
| TGAGCTAAAGCTGGAAGCAC+TGG | 0.467552 | 4_4:+65906362 | None:intergenic |
| CATATCACCAAGGAATCATA+TGG | 0.470079 | 4_4:-65907788 | Msa0696100:CDS |
| AAACCGACAAGCAGCCCAAC+CGG | 0.471084 | 4_4:+65907849 | None:intergenic |
| AGAAGCAACCTGAGAAGATC+AGG | 0.472613 | 4_4:-65908168 | Msa0696100:CDS |
| GCATCCTGTATTCTACCAAC+AGG | 0.478437 | 4_4:+65907703 | None:intergenic |
| GTGAAAACCATATGATTCCT+TGG | 0.479965 | 4_4:+65907781 | None:intergenic |
| AGTGCTTCCAGCTTTAGCTC+AGG | 0.480412 | 4_4:-65906360 | Msa0696100:intron |
| AAGCAACACCTGATCTTCTC+AGG | 0.480533 | 4_4:+65908160 | None:intergenic |
| TCTGCAGATGGCATCACACT+TGG | 0.481006 | 4_4:-65905961 | Msa0696100:CDS |
| GACAAGCTTGTAATTGCAGC+TGG | 0.484313 | 4_4:-65907393 | Msa0696100:CDS |
| TAACACACAAAGAGTTATAG+AGG | 0.487725 | 4_4:-65907965 | Msa0696100:CDS |
| AAGCCTAGAGTGGTTGTTCT+CGG | 0.488864 | 4_4:-65907874 | Msa0696100:CDS |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 4_4:+65906635 | None:intergenic |
| TATGCAACTTTGAATTGGTA+AGG | 0.497896 | 4_4:+65907417 | None:intergenic |
| TGGTTGTTCTCGGTACCGGT+TGG | 0.498770 | 4_4:-65907864 | Msa0696100:CDS |
| CAATTTGTGTATAAACATAT+GGG | 0.504254 | 4_4:-65905934 | Msa0696100:CDS |
| GGAAGATGTCTTTGCACTTG+GGG | 0.505360 | 4_4:-65906417 | Msa0696100:CDS |
| GTTTGTGTCAACTCCAGTGC+AGG | 0.507620 | 4_4:+65907642 | None:intergenic |
| TCTTATGCGGGGTGTGGTGA+AGG | 0.508837 | 4_4:-65906702 | Msa0696100:CDS |
| CTGCATTGTGTAGTTATTGG+AGG | 0.508933 | 4_4:-65907094 | Msa0696100:CDS |
| AGGCTAACCTGAGCTAAAGC+TGG | 0.509934 | 4_4:+65906353 | None:intergenic |
| GCTAGAAAGAAGTATGAGTT+GGG | 0.516821 | 4_4:+65907667 | None:intergenic |
| CCTACAGGAGTGGAATTTAG+TGG | 0.520988 | 4_4:-65907067 | Msa0696100:CDS |
| CTCTTTAGATAATCCACCAT+TGG | 0.522845 | 4_4:+65907440 | None:intergenic |
| TCCATCTACATGGGAAGGTA+AGG | 0.529367 | 4_4:+65908077 | None:intergenic |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 4_4:-65906984 | Msa0696100:intron |
| ATACTTTCATCCTTTGACGT+TGG | 0.533948 | 4_4:-65906859 | Msa0696100:CDS |
| CATTGTGTAGTTATTGGAGG+TGG | 0.534574 | 4_4:-65907091 | Msa0696100:CDS |
| AGTCTGGAGTTTGTCTTATG+CGG | 0.535341 | 4_4:-65906715 | Msa0696100:CDS |
| CTGTCGAAGGCCAACGTCAA+AGG | 0.536614 | 4_4:+65906849 | None:intergenic |
| TGGAAGTAATGTACATGAGA+AGG | 0.538179 | 4_4:-65908136 | Msa0696100:CDS |
| TTTGTGTGTTAGGGAGCTGA+TGG | 0.540218 | 4_4:+65907977 | None:intergenic |
| TCTTTGGCAGAGACAACAGC+AGG | 0.541549 | 4_4:-65905592 | Msa0696100:CDS |
| ATAAGGCACTTGTTGATCTA+CGG | 0.542831 | 4_4:-65905888 | Msa0696100:CDS |
| GGCAGAGACAACAGCAGGAT+AGG | 0.543946 | 4_4:-65905587 | Msa0696100:CDS |
| CCACTAAATTCCACTCCTGT+AGG | 0.546000 | 4_4:+65907067 | None:intergenic |
| GGACTAGAGGCAACAAAACC+AGG | 0.554285 | 4_4:-65907901 | Msa0696100:CDS |
| GTCTCTGCCAAAGACAAAAG+TGG | 0.556692 | 4_4:+65905601 | None:intergenic |
| GATGATCCGACAAGATATGC+AGG | 0.562686 | 4_4:-65907922 | Msa0696100:CDS |
| AGGTCTGTTGCTGAGCCTGT+TGG | 0.569427 | 4_4:-65907718 | Msa0696100:CDS |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 4_4:-65906457 | Msa0696100:intron |
| GTACCGAGAACAACCACTCT+AGG | 0.573776 | 4_4:+65907871 | None:intergenic |
| GGAAAGGCTTTGTCTGCAGA+TGG | 0.574116 | 4_4:-65905973 | Msa0696100:CDS |
| TCTTATGTTATAGGATGCAA+AGG | 0.575813 | 4_4:-65905729 | Msa0696100:intron |
| AATGGTCCATCTACATGGGA+AGG | 0.577054 | 4_4:+65908072 | None:intergenic |
| TTGTTGGCTTCAACATGTGT+TGG | 0.577991 | 4_4:-65907754 | Msa0696100:CDS |
| CTGATGCTTTCTGAAAATCC+AGG | 0.580189 | 4_4:-65907267 | Msa0696100:intron |
| TGCGAGGCAGTTACCAATGG+TGG | 0.582363 | 4_4:-65907453 | Msa0696100:CDS |
| TGAGCCTGTTGGTAGAATAC+AGG | 0.585959 | 4_4:-65907707 | Msa0696100:CDS |
| GGCTTCACATACCTTCCACC+TGG | 0.586382 | 4_4:+65906560 | None:intergenic |
| TTCCAAGCTCTCCAGGTGGA+AGG | 0.587295 | 4_4:-65906571 | Msa0696100:intron |
| GAGAGAACATTTACAACCAA+AGG | 0.588960 | 4_4:-65908102 | Msa0696100:CDS |
| AGTTTGTCTTATGCGGGGTG+TGG | 0.589261 | 4_4:-65906708 | Msa0696100:CDS |
| TACTGCGAGGCAGTTACCAA+TGG | 0.597374 | 4_4:-65907456 | Msa0696100:CDS |
| CTTATGTTATAGGATGCAAA+GGG | 0.602916 | 4_4:-65905728 | Msa0696100:intron |
| TGTTGATCTACGGCAATCCA+AGG | 0.602932 | 4_4:-65905878 | Msa0696100:intron |
| TGGGAAACAGAATGGAGGAA+AGG | 0.603382 | 4_4:-65905989 | Msa0696100:CDS |
| ATGGGGAGCATGGCATCAGT+AGG | 0.604143 | 4_4:-65905916 | Msa0696100:CDS |
| GTATAAACATATGGGGAGCA+TGG | 0.604718 | 4_4:-65905926 | Msa0696100:CDS |
| AATACAGGATGCACTAGCAA+AGG | 0.606941 | 4_4:-65907692 | Msa0696100:CDS |
| ATGGATGCGTGTTCCGTCTG+TGG | 0.610196 | 4_4:-65906438 | Msa0696100:CDS |
| CTATAACAATGGCATTAGCA+AGG | 0.610697 | 4_4:-65908197 | None:intergenic |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 4_4:+65906613 | None:intergenic |
| CGAAAATGGTCCATCTACAT+GGG | 0.615536 | 4_4:+65908068 | None:intergenic |
| TATGCGGGGTGTGGTGAAGG+AGG | 0.616063 | 4_4:-65906699 | Msa0696100:CDS |
| GACAAGATATGCAGGACTAG+AGG | 0.619013 | 4_4:-65907914 | Msa0696100:CDS |
| TGGAGGTGGTCCTACAGGAG+TGG | 0.621881 | 4_4:-65907077 | Msa0696100:CDS |
| GCTTCGTTGCATACTGTCGA+AGG | 0.629576 | 4_4:+65906836 | None:intergenic |
| GCAAAGACATCTTCCACAGA+CGG | 0.636642 | 4_4:+65906425 | None:intergenic |
| TTACACGTGTGCTGAGCTGG+AGG | 0.642106 | 4_4:-65905655 | Msa0696100:CDS |
| TCTGGAGTTTGTCTTATGCG+GGG | 0.644473 | 4_4:-65906713 | Msa0696100:CDS |
| AGCAACAGACCTGAATTCAA+GGG | 0.646467 | 4_4:+65907729 | None:intergenic |
| ACCAGGTGAAAAGCCTAGAG+TGG | 0.649954 | 4_4:-65907884 | Msa0696100:CDS |
| TGACAGGTTGCTGAAAGACA+AGG | 0.650294 | 4_4:-65906042 | Msa0696100:intron |
| ACACATGTTGAAGCCAACAA+AGG | 0.657554 | 4_4:+65907757 | None:intergenic |
| AAAATTGGGAAACAGAATGG+AGG | 0.666719 | 4_4:-65905994 | Msa0696100:CDS |
| AATTTGTGTATAAACATATG+GGG | 0.676076 | 4_4:-65905933 | Msa0696100:CDS |
| TGCAACGAAGCACTTAACAA+AGG | 0.676652 | 4_4:-65906824 | Msa0696100:intron |
| AATCTTCCAAGCTCTCCAGG+TGG | 0.690106 | 4_4:-65906575 | Msa0696100:CDS |
| CAGCACACGTGTAAGATATG+CGG | 0.691917 | 4_4:+65905664 | None:intergenic |
| ATGTCAACAGGTCTACTGCG+AGG | 0.733020 | 4_4:-65907469 | Msa0696100:intron |
| ATGTTGTGTGCATATCACCA+AGG | 0.767641 | 4_4:-65907798 | Msa0696100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTAAATTTTAATATC+TGG | + | chr4_4:65907155-65907174 | None:intergenic | 10.0% |
| !!! | ATTTGTTATAATAATTATGC+AGG | - | chr4_4:65906487-65906506 | Msa0696100:intron | 15.0% |
| !!! | GTATAGTTTTTCTAAAAGAA+GGG | + | chr4_4:65906101-65906120 | None:intergenic | 20.0% |
| !!! | AGTATAGTTTTTCTAAAAGA+AGG | + | chr4_4:65906102-65906121 | None:intergenic | 20.0% |
| !!! | AAAATGTTTTTCATTATGAC+AGG | - | chr4_4:65906546-65906565 | Msa0696100:intron | 20.0% |
| !! | AATTATGAAAAGTTAAACAG+TGG | + | chr4_4:65906801-65906820 | None:intergenic | 20.0% |
| !!! | CTGTTTAACTTTTCATAATT+AGG | - | chr4_4:65906801-65906820 | Msa0696100:intron | 20.0% |
| !! | AAGACAATATAGATAAATGT+CGG | + | chr4_4:65907434-65907453 | None:intergenic | 20.0% |
| !!! | TCTATTGGAATTTTTTACAT+TGG | + | chr4_4:65907462-65907481 | None:intergenic | 20.0% |
| !! | AATGTAAAAAATTCCAATAG+AGG | - | chr4_4:65907461-65907480 | Msa0696100:CDS | 20.0% |
| !! | ATGTAAAAAATTCCAATAGA+GGG | - | chr4_4:65907462-65907481 | Msa0696100:CDS | 20.0% |
| !! | ACAATTTGTGTATAAACATA+TGG | - | chr4_4:65907756-65907775 | Msa0696100:CDS | 20.0% |
| !! | CAATTTGTGTATAAACATAT+GGG | - | chr4_4:65907757-65907776 | Msa0696100:CDS | 20.0% |
| !! | AATTTGTGTATAAACATATG+GGG | - | chr4_4:65907758-65907777 | Msa0696100:CDS | 20.0% |
| !! | CAAAATGTATCTTATGTTAT+AGG | - | chr4_4:65907953-65907972 | Msa0696100:CDS | 20.0% |
| !! | ATTCTGGAAATATACGAAAA+TGG | + | chr4_4:65905640-65905659 | None:intergenic | 25.0% |
| ! | GAAAAACTATACTGTTACAA+TGG | - | chr4_4:65906109-65906128 | Msa0696100:intron | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | + | chr4_4:65906464-65906483 | None:intergenic | 25.0% |
| ! | TGTTATAATAATTATGCAGG+TGG | - | chr4_4:65906490-65906509 | Msa0696100:intron | 25.0% |
| ! | GTTATAATAATTATGCAGGT+GGG | - | chr4_4:65906491-65906510 | Msa0696100:intron | 25.0% |
| !!! | GTCATTATTTTTTTTGCCAA+AGG | - | chr4_4:65906515-65906534 | Msa0696100:intron | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | - | chr4_4:65906960-65906979 | Msa0696100:intron | 25.0% |
| !! | ATCACTCAAAACTATCTTTT+GGG | + | chr4_4:65907024-65907043 | None:intergenic | 25.0% |
| ! | CAAAACATCATAAGACAATA+AGG | + | chr4_4:65907361-65907380 | None:intergenic | 25.0% |
| ! | TAGAGTTGTTCAACAAAATT+GGG | - | chr4_4:65907683-65907702 | Msa0696100:CDS | 25.0% |
| ! | CAAAATATTGTGTCAAAAAG+TGG | + | chr4_4:65908168-65908187 | None:intergenic | 25.0% |
| !!! | CACTTTTTGACACAATATTT+TGG | - | chr4_4:65908166-65908185 | Msa0696100:CDS | 25.0% |
| GTTGTTCTGTTCTTTAATTC+TGG | + | chr4_4:65905656-65905675 | None:intergenic | 30.0% | |
| !! | ACAACATGAATTTTTCGAAG+AGG | - | chr4_4:65905671-65905690 | Msa0696100:CDS | 30.0% |
| !! | CAACATGAATTTTTCGAAGA+GGG | - | chr4_4:65905672-65905691 | Msa0696100:CDS | 30.0% |
| !! | AACATGAATTTTTCGAAGAG+GGG | - | chr4_4:65905673-65905692 | Msa0696100:CDS | 30.0% |
| CTATAACTCTTTGTGTGTTA+GGG | + | chr4_4:65905726-65905745 | None:intergenic | 30.0% | |
| TCTATAACTCTTTGTGTGTT+AGG | + | chr4_4:65905727-65905746 | None:intergenic | 30.0% | |
| TAACACACAAAGAGTTATAG+AGG | - | chr4_4:65905726-65905745 | Msa0696100:intron | 30.0% | |
| ! | CAATTTTACTTCATGTCAAC+AGG | - | chr4_4:65906210-65906229 | Msa0696100:intron | 30.0% |
| TATGCAACTTTGAATTGGTA+AGG | + | chr4_4:65906277-65906296 | None:intergenic | 30.0% | |
| TGTCATATGCAACTTTGAAT+TGG | + | chr4_4:65906282-65906301 | None:intergenic | 30.0% | |
| !! | CCTTTAACTTTTGGTATCAA+GGG | - | chr4_4:65906328-65906347 | Msa0696100:intron | 30.0% |
| TGTATCATGCTCAAGAAATA+AGG | - | chr4_4:65906383-65906402 | Msa0696100:CDS | 30.0% | |
| !! | TTTCAGAAAGCATCAGATTA+AGG | + | chr4_4:65906420-65906439 | None:intergenic | 30.0% |
| GACATGTAATCATTGAAGAT+TGG | + | chr4_4:65906923-65906942 | None:intergenic | 30.0% | |
| ! | TCACTCAAAACTATCTTTTG+GGG | + | chr4_4:65907023-65907042 | None:intergenic | 30.0% |
| ! | CATCACTCAAAACTATCTTT+TGG | + | chr4_4:65907025-65907044 | None:intergenic | 30.0% |
| !!! | CAAAAGATAGTTTTGAGTGA+TGG | - | chr4_4:65907023-65907042 | Msa0696100:CDS | 30.0% |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | + | chr4_4:65907095-65907114 | None:intergenic | 30.0% |
| GTTGTTGAATGATACAGAAT+TGG | - | chr4_4:65907221-65907240 | Msa0696100:intron | 30.0% | |
| ! | TGATGTTTTGTCAGTACATA+TGG | - | chr4_4:65907371-65907390 | Msa0696100:CDS | 30.0% |
| ATGCATAGTACTACAGAAAT+AGG | - | chr4_4:65907528-65907547 | Msa0696100:intron | 30.0% | |
| ! | TTTTGTTGAACAACTCTACA+AGG | + | chr4_4:65907681-65907700 | None:intergenic | 30.0% |
| GTAGAGTTGTTCAACAAAAT+TGG | - | chr4_4:65907682-65907701 | Msa0696100:CDS | 30.0% | |
| AACAAAATTGGGAAACAGAA+TGG | - | chr4_4:65907694-65907713 | Msa0696100:CDS | 30.0% | |
| CTAATGTCTAATTTACACTC+TGG | - | chr4_4:65907870-65907889 | Msa0696100:CDS | 30.0% | |
| TCTTATGTTATAGGATGCAA+AGG | - | chr4_4:65907962-65907981 | Msa0696100:CDS | 30.0% | |
| CTTATGTTATAGGATGCAAA+GGG | - | chr4_4:65907963-65907982 | Msa0696100:CDS | 30.0% | |
| !!! | CAAAAAGTGGATTGATTTTG+TGG | + | chr4_4:65908155-65908174 | None:intergenic | 30.0% |
| TGGAAGTAATGTACATGAGA+AGG | - | chr4_4:65905555-65905574 | Msa0696100:three_prime_UTR | 35.0% | |
| GAGAGAACATTTACAACCAA+AGG | - | chr4_4:65905589-65905608 | Msa0696100:CDS | 35.0% | |
| CATATCACCAAGGAATCATA+TGG | - | chr4_4:65905903-65905922 | Msa0696100:CDS | 35.0% | |
| GTGAAAACCATATGATTCCT+TGG | + | chr4_4:65905913-65905932 | None:intergenic | 35.0% | |
| ! | TATGGTTTTCACTCCTTTGT+TGG | - | chr4_4:65905921-65905940 | Msa0696100:CDS | 35.0% |
| ! | GCTAGAAAGAAGTATGAGTT+GGG | + | chr4_4:65906027-65906046 | None:intergenic | 35.0% |
| ! | AGCTAGAAAGAAGTATGAGT+TGG | + | chr4_4:65906028-65906047 | None:intergenic | 35.0% |
| CTCTTTAGATAATCCACCAT+TGG | + | chr4_4:65906254-65906273 | None:intergenic | 35.0% | |
| !! | GCCTTTAACTTTTGGTATCA+AGG | - | chr4_4:65906327-65906346 | Msa0696100:intron | 35.0% |
| CCCTTGATACCAAAAGTTAA+AGG | + | chr4_4:65906331-65906350 | None:intergenic | 35.0% | |
| ! | TTTTGGTATCAAGGGAGTAA+AGG | - | chr4_4:65906336-65906355 | Msa0696100:intron | 35.0% |
| !! | AACATTTTCAGCTTAGCCTT+TGG | + | chr4_4:65906534-65906553 | None:intergenic | 35.0% |
| ATACTTTCATCCTTTGACGT+TGG | - | chr4_4:65906832-65906851 | Msa0696100:CDS | 35.0% | |
| ATACGCGATCTAAACACAAA+AGG | + | chr4_4:65906897-65906916 | None:intergenic | 35.0% | |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | + | chr4_4:65907096-65907115 | None:intergenic | 35.0% |
| !! | TGATACAGAATTGGTGTTGA+TGG | - | chr4_4:65907230-65907249 | Msa0696100:intron | 35.0% |
| ! | GTTTTCTTGAACAAACTGGA+AGG | - | chr4_4:65907306-65907325 | Msa0696100:CDS | 35.0% |
| !! | ATGTCGGCTTAACTTTGTTT+AGG | + | chr4_4:65907418-65907437 | None:intergenic | 35.0% |
| AAAATTGGGAAACAGAATGG+AGG | - | chr4_4:65907697-65907716 | Msa0696100:CDS | 35.0% | |
| TAGATCAACAAGTGCCTTAT+AGG | + | chr4_4:65907803-65907822 | None:intergenic | 35.0% | |
| ! | ATAAGGCACTTGTTGATCTA+CGG | - | chr4_4:65907803-65907822 | Msa0696100:CDS | 35.0% |
| GAAACTTTCCCATTATACCT+TGG | + | chr4_4:65907833-65907852 | None:intergenic | 35.0% | |
| ! | GTTTTACGTGGCAGTAAATT+GGG | - | chr4_4:65908064-65908083 | Msa0696100:CDS | 35.0% |
| ! | TTTTACGTGGCAGTAAATTG+GGG | - | chr4_4:65908065-65908084 | Msa0696100:CDS | 35.0% |
| !!! | GACACAATATTTTGGTTGAG+TGG | - | chr4_4:65908174-65908193 | Msa0696100:CDS | 35.0% |
| !!! | AGAAGATCAGGTGTTGCTTT+TGG | - | chr4_4:65905535-65905554 | Msa0696100:three_prime_UTR | 40.0% |
| CGAAAATGGTCCATCTACAT+GGG | + | chr4_4:65905626-65905645 | None:intergenic | 40.0% | |
| ACGAAAATGGTCCATCTACA+TGG | + | chr4_4:65905627-65905646 | None:intergenic | 40.0% | |
| ! | TTTTCGAAGAGGGGAATAAC+AGG | - | chr4_4:65905682-65905701 | Msa0696100:CDS | 40.0% |
| TCTAGTCCTGCATATCTTGT+CGG | + | chr4_4:65905778-65905797 | None:intergenic | 40.0% | |
| !! | CTGCTTGTCGGTTTCTTAAA+GGG | - | chr4_4:65905851-65905870 | Msa0696100:intron | 40.0% |
| ATGTTGTGTGCATATCACCA+AGG | - | chr4_4:65905893-65905912 | Msa0696100:CDS | 40.0% | |
| ACACATGTTGAAGCCAACAA+AGG | + | chr4_4:65905937-65905956 | None:intergenic | 40.0% | |
| !! | TTGTTGGCTTCAACATGTGT+TGG | - | chr4_4:65905937-65905956 | Msa0696100:CDS | 40.0% |
| AGCAACAGACCTGAATTCAA+GGG | + | chr4_4:65905965-65905984 | None:intergenic | 40.0% | |
| AATACAGGATGCACTAGCAA+AGG | - | chr4_4:65905999-65906018 | Msa0696100:CDS | 40.0% | |
| ! | CTGATGCTTTCTGAAAATCC+AGG | - | chr4_4:65906424-65906443 | Msa0696100:CDS | 40.0% |
| ! | ATGCTTTCTGAAAATCCAGG+TGG | - | chr4_4:65906427-65906446 | Msa0696100:CDS | 40.0% |
| ! | TGCTTTCTGAAAATCCAGGT+GGG | - | chr4_4:65906428-65906447 | Msa0696100:CDS | 40.0% |
| CTGCTGCATTGTGTAGTTAT+TGG | - | chr4_4:65906594-65906613 | Msa0696100:CDS | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | - | chr4_4:65906597-65906616 | Msa0696100:CDS | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | - | chr4_4:65906600-65906619 | Msa0696100:CDS | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | - | chr4_4:65906707-65906726 | Msa0696100:CDS | 40.0% | |
| ! | TGCAACGAAGCACTTAACAA+AGG | - | chr4_4:65906867-65906886 | Msa0696100:CDS | 40.0% |
| ! | AGTCTGGAGTTTGTCTTATG+CGG | - | chr4_4:65906976-65906995 | Msa0696100:intron | 40.0% |
| GATGGAACTGAAGTTCCTTA+TGG | - | chr4_4:65907041-65907060 | Msa0696100:CDS | 40.0% | |
| TGAAGTTCCTTATGGTCTCT+TGG | - | chr4_4:65907049-65907068 | Msa0696100:CDS | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | - | chr4_4:65907054-65907073 | Msa0696100:CDS | 40.0% | |
| !! | ACAGAATTGGTGTTGATGGA+TGG | - | chr4_4:65907234-65907253 | Msa0696100:intron | 40.0% |
| TGGAAGATGTCTTTGCACTT+GGG | - | chr4_4:65907273-65907292 | Msa0696100:CDS | 40.0% | |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | - | chr4_4:65907302-65907321 | Msa0696100:CDS | 40.0% |
| GAGTATACTTTCCTATGCAC+TGG | - | chr4_4:65907622-65907641 | Msa0696100:intron | 40.0% | |
| GTATAAACATATGGGGAGCA+TGG | - | chr4_4:65907765-65907784 | Msa0696100:CDS | 40.0% | |
| TACGGCAATCCAAGGTATAA+TGG | - | chr4_4:65907821-65907840 | Msa0696100:CDS | 40.0% | |
| ACGGCAATCCAAGGTATAAT+GGG | - | chr4_4:65907822-65907841 | Msa0696100:CDS | 40.0% | |
| ! | GGTTTTACGTGGCAGTAAAT+TGG | - | chr4_4:65908063-65908082 | Msa0696100:CDS | 40.0% |
| !! | CAGCAGGATAGGTTGAATTT+TGG | - | chr4_4:65908115-65908134 | Msa0696100:CDS | 40.0% |
| AGAAGCAACCTGAGAAGATC+AGG | - | chr4_4:65905523-65905542 | Msa0696100:three_prime_UTR | 45.0% | |
| AAGCAACACCTGATCTTCTC+AGG | + | chr4_4:65905534-65905553 | None:intergenic | 45.0% | |
| TCCTTACCTTCCCATGTAGA+TGG | - | chr4_4:65905613-65905632 | Msa0696100:CDS | 45.0% | |
| TCCATCTACATGGGAAGGTA+AGG | + | chr4_4:65905617-65905636 | None:intergenic | 45.0% | |
| AATGGTCCATCTACATGGGA+AGG | + | chr4_4:65905622-65905641 | None:intergenic | 45.0% | |
| TTTGTGTGTTAGGGAGCTGA+TGG | + | chr4_4:65905717-65905736 | None:intergenic | 45.0% | |
| GATGATCCGACAAGATATGC+AGG | - | chr4_4:65905769-65905788 | Msa0696100:intron | 45.0% | |
| GACAAGATATGCAGGACTAG+AGG | - | chr4_4:65905777-65905796 | Msa0696100:intron | 45.0% | |
| AAGCCTAGAGTGGTTGTTCT+CGG | - | chr4_4:65905817-65905836 | Msa0696100:intron | 45.0% | |
| !! | GCTGCTTGTCGGTTTCTTAA+AGG | - | chr4_4:65905850-65905869 | Msa0696100:intron | 45.0% |
| ! | GTGTTGGTACCCTTGAATTC+AGG | - | chr4_4:65905953-65905972 | Msa0696100:CDS | 45.0% |
| CAGCAACAGACCTGAATTCA+AGG | + | chr4_4:65905966-65905985 | None:intergenic | 45.0% | |
| ! | TGAGCCTGTTGGTAGAATAC+AGG | - | chr4_4:65905984-65906003 | Msa0696100:CDS | 45.0% |
| GCATCCTGTATTCTACCAAC+AGG | + | chr4_4:65905991-65906010 | None:intergenic | 45.0% | |
| !! | TTCTTTCTAGCTTCCTGCAC+TGG | - | chr4_4:65906036-65906055 | Msa0696100:CDS | 45.0% |
| GACAAGCTTGTAATTGCAGC+TGG | - | chr4_4:65906298-65906317 | Msa0696100:intron | 45.0% | |
| !! | GGAGCTGAGCCTTTAACTTT+TGG | - | chr4_4:65906319-65906338 | Msa0696100:intron | 45.0% |
| ATGGATATGAAACACCCACC+TGG | + | chr4_4:65906445-65906464 | None:intergenic | 45.0% | |
| CCACTAAATTCCACTCCTGT+AGG | + | chr4_4:65906627-65906646 | None:intergenic | 45.0% | |
| CCTACAGGAGTGGAATTTAG+TGG | - | chr4_4:65906624-65906643 | Msa0696100:CDS | 45.0% | |
| ! | GTCTGGAGTTTGTCTTATGC+GGG | - | chr4_4:65906977-65906996 | Msa0696100:intron | 45.0% |
| ! | TCTGGAGTTTGTCTTATGCG+GGG | - | chr4_4:65906978-65906997 | Msa0696100:intron | 45.0% |
| GACCAAACCAAGAGACCATA+AGG | + | chr4_4:65907059-65907078 | None:intergenic | 45.0% | |
| GCAAAGACATCTTCCACAGA+CGG | + | chr4_4:65907269-65907288 | None:intergenic | 45.0% | |
| GTGGAAGATGTCTTTGCACT+TGG | - | chr4_4:65907272-65907291 | Msa0696100:CDS | 45.0% | |
| GGAAGATGTCTTTGCACTTG+GGG | - | chr4_4:65907274-65907293 | Msa0696100:CDS | 45.0% | |
| !! | TCCAATAGAGGGTACTTGAC+AGG | - | chr4_4:65907473-65907492 | Msa0696100:intron | 45.0% |
| TGACAGGTTGCTGAAAGACA+AGG | - | chr4_4:65907649-65907668 | Msa0696100:CDS | 45.0% | |
| TGGGAAACAGAATGGAGGAA+AGG | - | chr4_4:65907702-65907721 | Msa0696100:CDS | 45.0% | |
| TGTTGATCTACGGCAATCCA+AGG | - | chr4_4:65907813-65907832 | Msa0696100:CDS | 45.0% | |
| ! | GTTTTGTCAGCTGGCTGATA+TGG | - | chr4_4:65908000-65908019 | Msa0696100:CDS | 45.0% |
| CAGCACACGTGTAAGATATG+CGG | + | chr4_4:65908030-65908049 | None:intergenic | 45.0% | |
| ! | CTGGAGGAATAGGTTTTACG+TGG | - | chr4_4:65908052-65908071 | Msa0696100:CDS | 45.0% |
| !! | TGGGGAACCACTTTTGTCTT+TGG | - | chr4_4:65908083-65908102 | Msa0696100:CDS | 45.0% |
| GTCTCTGCCAAAGACAAAAG+TGG | + | chr4_4:65908093-65908112 | None:intergenic | 45.0% | |
| ATGGGAAGGTAAGGAGCCTT+TGG | + | chr4_4:65905608-65905627 | None:intergenic | 50.0% | |
| GGACTAGAGGCAACAAAACC+AGG | - | chr4_4:65905790-65905809 | Msa0696100:intron | 50.0% | |
| ACCAGGTGAAAAGCCTAGAG+TGG | - | chr4_4:65905807-65905826 | Msa0696100:intron | 50.0% | |
| ! | ACCACTCTAGGCTTTTCACC+TGG | + | chr4_4:65905811-65905830 | None:intergenic | 50.0% |
| GTACCGAGAACAACCACTCT+AGG | + | chr4_4:65905823-65905842 | None:intergenic | 50.0% | |
| AGAGTGGTTGTTCTCGGTAC+CGG | - | chr4_4:65905823-65905842 | Msa0696100:intron | 50.0% | |
| GTTTGTGTCAACTCCAGTGC+AGG | + | chr4_4:65906052-65906071 | None:intergenic | 50.0% | |
| ATGTCAACAGGTCTACTGCG+AGG | - | chr4_4:65906222-65906241 | Msa0696100:intron | 50.0% | |
| TACTGCGAGGCAGTTACCAA+TGG | - | chr4_4:65906235-65906254 | Msa0696100:intron | 50.0% | |
| GTTATTGGAGGTGGTCCTAC+AGG | - | chr4_4:65906609-65906628 | Msa0696100:CDS | 50.0% | |
| GCTTCGTTGCATACTGTCGA+AGG | + | chr4_4:65906858-65906877 | None:intergenic | 50.0% | |
| AGTTTGTCTTATGCGGGGTG+TGG | - | chr4_4:65906983-65907002 | Msa0696100:intron | 50.0% | |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | - | chr4_4:65907068-65907087 | Msa0696100:CDS | 50.0% |
| CTGAATCTTCCAAGCTCTCC+AGG | - | chr4_4:65907113-65907132 | Msa0696100:CDS | 50.0% | |
| AATCTTCCAAGCTCTCCAGG+TGG | - | chr4_4:65907116-65907135 | Msa0696100:CDS | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | - | chr4_4:65907284-65907303 | Msa0696100:CDS | 50.0% | |
| ! | TGAGCTAAAGCTGGAAGCAC+TGG | + | chr4_4:65907332-65907351 | None:intergenic | 50.0% |
| ! | AGTGCTTCCAGCTTTAGCTC+AGG | - | chr4_4:65907331-65907350 | Msa0696100:CDS | 50.0% |
| AGGCTAACCTGAGCTAAAGC+TGG | + | chr4_4:65907341-65907360 | None:intergenic | 50.0% | |
| GCCTGTCAAGTACCCTCTAT+TGG | + | chr4_4:65907477-65907496 | None:intergenic | 50.0% | |
| ! | GGAAAGGCTTTGTCTGCAGA+TGG | - | chr4_4:65907718-65907737 | Msa0696100:CDS | 50.0% |
| TCTGCAGATGGCATCACACT+TGG | - | chr4_4:65907730-65907749 | Msa0696100:CDS | 50.0% | |
| GGCATCAGTAGGTGCCTATA+AGG | - | chr4_4:65907786-65907805 | Msa0696100:CDS | 50.0% | |
| ! | GCAAAGGGATTGTCACTTGC+TGG | - | chr4_4:65907978-65907997 | Msa0696100:CDS | 50.0% |
| !!! | CACTTGCTGGTTTTGTCAGC+TGG | - | chr4_4:65907991-65908010 | Msa0696100:CDS | 50.0% |
| ATCTTACACGTGTGCTGAGC+TGG | - | chr4_4:65908033-65908052 | Msa0696100:CDS | 50.0% | |
| TCTTTGGCAGAGACAACAGC+AGG | - | chr4_4:65908099-65908118 | Msa0696100:CDS | 50.0% | |
| !! | TGGTTGTTCTCGGTACCGGT+TGG | - | chr4_4:65905827-65905846 | Msa0696100:intron | 55.0% |
| !! | GGTTGTTCTCGGTACCGGTT+GGG | - | chr4_4:65905828-65905847 | Msa0696100:intron | 55.0% |
| AAACCGACAAGCAGCCCAAC+CGG | + | chr4_4:65905845-65905864 | None:intergenic | 55.0% | |
| AGGTCTGTTGCTGAGCCTGT+TGG | - | chr4_4:65905973-65905992 | Msa0696100:CDS | 55.0% | |
| TGCGAGGCAGTTACCAATGG+TGG | - | chr4_4:65906238-65906257 | Msa0696100:intron | 55.0% | |
| CTGTCGAAGGCCAACGTCAA+AGG | + | chr4_4:65906845-65906864 | None:intergenic | 55.0% | |
| TCTTATGCGGGGTGTGGTGA+AGG | - | chr4_4:65906989-65907008 | Msa0696100:CDS | 55.0% | |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | - | chr4_4:65907062-65907081 | Msa0696100:CDS | 55.0% |
| TTCCAAGCTCTCCAGGTGGA+AGG | - | chr4_4:65907120-65907139 | Msa0696100:CDS | 55.0% | |
| TACCTTCCACCTGGAGAGCT+TGG | + | chr4_4:65907125-65907144 | None:intergenic | 55.0% | |
| GGCTTCACATACCTTCCACC+TGG | + | chr4_4:65907134-65907153 | None:intergenic | 55.0% | |
| ATGGATGCGTGTTCCGTCTG+TGG | - | chr4_4:65907253-65907272 | Msa0696100:intron | 55.0% | |
| CCTGTCAGTGACCAGTGCAT+AGG | + | chr4_4:65907636-65907655 | None:intergenic | 55.0% | |
| ! | CCTATGCACTGGTCACTGAC+AGG | - | chr4_4:65907633-65907652 | Msa0696100:CDS | 55.0% |
| ! | ATGGGGAGCATGGCATCAGT+AGG | - | chr4_4:65907775-65907794 | Msa0696100:CDS | 55.0% |
| TTACACGTGTGCTGAGCTGG+AGG | - | chr4_4:65908036-65908055 | Msa0696100:CDS | 55.0% | |
| GTGTGCTGAGCTGGAGGAAT+AGG | - | chr4_4:65908042-65908061 | Msa0696100:CDS | 55.0% | |
| GGCAGAGACAACAGCAGGAT+AGG | - | chr4_4:65908104-65908123 | Msa0696100:CDS | 55.0% | |
| !! | GTACCGGTTGGGCTGCTTGT+CGG | - | chr4_4:65905839-65905858 | Msa0696100:intron | 60.0% |
| TGGAGGTGGTCCTACAGGAG+TGG | - | chr4_4:65906614-65906633 | Msa0696100:CDS | 60.0% | |
| TATGCGGGGTGTGGTGAAGG+AGG | - | chr4_4:65906992-65907011 | Msa0696100:CDS | 60.0% | |
| CTCAGAGGGACCAACTCCTG+TGG | + | chr4_4:65907081-65907100 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 65905502 | 65908211 | 65905502 | ID=Msa0696100;Name=Msa0696100 |
| chr4_4 | mRNA | 65905502 | 65908211 | 65905502 | ID=Msa0696100-mRNA-1;Parent=Msa0696100;Name=Msa0696100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.87|1|1|1|8|81|544 |
| chr4_4 | exon | 65905502 | 65905738 | 65905502 | ID=Msa0696100-mRNA-1:exon:19137;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65905879 | 65906058 | 65905879 | ID=Msa0696100-mRNA-1:exon:19136;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65906361 | 65906475 | 65906361 | ID=Msa0696100-mRNA-1:exon:19135;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65906572 | 65906735 | 65906572 | ID=Msa0696100-mRNA-1:exon:19134;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65906825 | 65906890 | 65906825 | ID=Msa0696100-mRNA-1:exon:19133;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65906985 | 65907145 | 65906985 | ID=Msa0696100-mRNA-1:exon:19132;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65907268 | 65907481 | 65907268 | ID=Msa0696100-mRNA-1:exon:19131;Parent=Msa0696100-mRNA-1 |
| chr4_4 | exon | 65907633 | 65908211 | 65907633 | ID=Msa0696100-mRNA-1:exon:19130;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65907633 | 65908211 | 65907633 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65907268 | 65907481 | 65907268 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65906985 | 65907145 | 65906985 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65906825 | 65906890 | 65906825 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65906572 | 65906735 | 65906572 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65906361 | 65906475 | 65906361 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65905879 | 65906058 | 65905879 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | CDS | 65905583 | 65905738 | 65905583 | ID=Msa0696100-mRNA-1:cds;Parent=Msa0696100-mRNA-1 |
| chr4_4 | three_prime_UTR | 65905502 | 65905582 | 65905502 | ID=Msa0696100-mRNA-1:three_prime_utr;Parent=Msa0696100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
