AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188340 MtrunA17_Chr2g0277381 99.200 375 3 0 1 375 1 375 0.0 781
Msa0188340 MtrunA17_Chr1g0164511 28.497 193 118 5 77 256 13 198 1.51e-12 67.4
Msa0188340 MtrunA17_Chr3g0082161 28.497 193 118 5 77 256 13 198 1.96e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188340 AT4G06634.1 68.407 364 99 7 10 361 12 371 6.54e-161 457
Msa0188340 AT4G06634.3 65.489 368 96 9 10 361 12 364 1.73e-148 425
Msa0188340 AT4G06634.2 65.964 332 97 7 42 361 6 333 7.00e-135 389
Msa0188340 AT3G48430.1 27.273 121 80 2 77 195 1243 1357 2.96e-11 65.9
Msa0188340 AT3G48430.2 27.273 121 80 2 77 195 884 998 3.79e-11 65.5

Find 106 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGCTCCCGCTGTTAAA+TGG 0.155162 2_1:+3524886 Msa0188340:CDS
GTTTCTGTTGCAGAAATTTC+TGG 0.165103 2_1:+3527007 Msa0188340:intron
TCAGTAGTTGGCTCGGGTTC+TGG 0.253968 2_1:-3526453 None:intergenic
TTAGGGTTTGAAGAGAAATT+AGG 0.268581 2_1:-3524767 None:intergenic
TACTTTATCGGCACATCTAT+TGG 0.312836 2_1:-3529497 None:intergenic
GCGTATCTCTTCCCACAATC+TGG 0.321481 2_1:-3527834 None:intergenic
TTACGCTGAGCAACTTTAGA+AGG 0.345270 2_1:-3529836 None:intergenic
CCTTTCCACACCCCTCATAA+TGG 0.376204 2_1:-3526578 None:intergenic
GCAGTTTGTTTGCCATTATG+AGG 0.386353 2_1:+3526566 Msa0188340:CDS
CTAAAGTTGCTCAGCGTAAA+GGG 0.392561 2_1:+3529840 Msa0188340:CDS
ATGCTGTTAAGATGGGTAAC+AGG 0.398286 2_1:+3525063 Msa0188340:CDS
GGAGGAGTTGCATACTTTAT+CGG 0.401475 2_1:-3529509 None:intergenic
TGACATAGTACATTGGTTAT+CGG 0.402772 2_1:+3530141 Msa0188340:three_prime_UTR
CCTTCATAAGGACATGCATA+TGG 0.405323 2_1:-3529599 None:intergenic
CTCTTCCCACAATCTGGGTA+TGG 0.407430 2_1:-3527828 None:intergenic
GGTTCTGGCTCAGGAGCTAA+TGG 0.412849 2_1:-3526438 None:intergenic
GTTGGCTCGGGTTCTGGCTC+AGG 0.414498 2_1:-3526447 None:intergenic
GGGAGCCTTGGACGTGAGAA+AGG 0.426315 2_1:-3524874 None:intergenic
GTTTCTTCTTTCACTGGCCA+AGG 0.432210 2_1:-3529902 None:intergenic
CCATTTAACAGCGGGAGCCT+TGG 0.434294 2_1:-3524886 None:intergenic
CAAGGCTCCCGCTGTTAAAT+GGG 0.434337 2_1:+3524887 Msa0188340:CDS
AAGACATTTCTTAATTCATA+CGG 0.439731 2_1:+3527046 Msa0188340:CDS
GCAAGTGATCACGATGCTTA+TGG 0.440454 2_1:+3529749 Msa0188340:CDS
AGACATTTCTTAATTCATAC+GGG 0.448713 2_1:+3527047 Msa0188340:CDS
TTATAGATGCTGGTGCTTTG+AGG 0.456478 2_1:+3526517 Msa0188340:CDS
TCTAAAGTTGCTCAGCGTAA+AGG 0.457185 2_1:+3529839 Msa0188340:CDS
TCGTAAGTTTCTTCTTTCAC+TGG 0.459248 2_1:-3529908 None:intergenic
CAATATGCAGGCCTTCTCCT+TGG 0.459806 2_1:+3527749 Msa0188340:intron
CAGTTTGTTTGCCATTATGA+GGG 0.471982 2_1:+3526567 Msa0188340:CDS
CATAAATGCCTTGAAAGAAA+AGG 0.473578 2_1:+3526407 Msa0188340:CDS
CATTGCTTCCCATCATGAAA+AGG 0.475165 2_1:+3527881 Msa0188340:CDS
TAATAATGCTGAAAATGAAA+TGG 0.485384 2_1:+3529721 Msa0188340:CDS
CCACAAGACGTTGTTGCCAC+TGG 0.487699 2_1:+3525030 Msa0188340:CDS
AGCTTAAACTGCATTTAAAG+AGG 0.494339 2_1:+3529651 Msa0188340:CDS
ATATTAAAAGTGGCAGGGGT+TGG 0.494716 2_1:-3529869 None:intergenic
TTAGCCATATTAAAAGTGGC+AGG 0.498748 2_1:-3529875 None:intergenic
CCATATGCATGTCCTTATGA+AGG 0.500362 2_1:+3529599 Msa0188340:CDS
CTTTGTAGCTATGAAGGCTG+TGG 0.501431 2_1:+3526486 Msa0188340:CDS
TCCTTATGAAGGGTGTGAAA+AGG 0.501607 2_1:+3529610 Msa0188340:CDS
TGAAAATGCTATGCATGCTC+TGG 0.502807 2_1:+3529697 Msa0188340:CDS
AACAAATTCTGAGAAATCAA+TGG 0.509712 2_1:+3524815 Msa0188340:exon
GGAAGTGTATGCTGTTAAGA+TGG 0.510117 2_1:+3525055 Msa0188340:CDS
AAGTACTTCAGTAGTTGGCT+CGG 0.511218 2_1:-3526460 None:intergenic
GAAGATGGTTGGAGATATGC+TGG 0.512941 2_1:+3529974 Msa0188340:CDS
AGGAAGCATTCCCACATCCA+TGG 0.515275 2_1:+3526537 Msa0188340:CDS
ACTGCCTCTCTCCATGGATG+TGG 0.516577 2_1:-3526548 None:intergenic
GGAGCCTTGGACGTGAGAAA+GGG 0.516870 2_1:-3524873 None:intergenic
CGTATCTCTTCCCACAATCT+GGG 0.520117 2_1:-3527833 None:intergenic
CTTCATAAGGACATGCATAT+GGG 0.522116 2_1:-3529598 None:intergenic
GTAAAAGTCAGAAGCAAAGC+AGG 0.525445 2_1:+3529789 Msa0188340:CDS
AGTACTTCAGTAGTTGGCTC+GGG 0.526508 2_1:-3526459 None:intergenic
TTCTGGAGCGACATACGGTT+CGG 0.536084 2_1:+3529562 Msa0188340:CDS
CAGCGAAGAAACTGAGGAGG+AGG 0.538145 2_1:+3529937 Msa0188340:CDS
AGACCTTCTGGAGCGACATA+CGG 0.541337 2_1:+3529557 Msa0188340:CDS
GTGTCTTCATGTGAGACCTC+AGG 0.542819 2_1:-3527779 None:intergenic
ATTAATATAAATTCATCCTA+CGG 0.545288 2_1:-3530178 None:intergenic
TCTTCCCACAATCTGGGTAT+GGG 0.550401 2_1:-3527827 None:intergenic
CGCTGAGCAACTTTAGAAGG+AGG 0.554525 2_1:-3529833 None:intergenic
TATGCCCATACCCAGATTGT+GGG 0.558178 2_1:+3527823 Msa0188340:CDS
CTGTTAAATGGGTCAAACAA+TGG 0.559100 2_1:+3524898 Msa0188340:CDS
GTTTGCCATTATGAGGGGTG+TGG 0.559433 2_1:+3526573 Msa0188340:CDS
CAAGACGTTGTTGCCACTGG+TGG 0.559549 2_1:+3525033 Msa0188340:CDS
CCATTATGAGGGGTGTGGAA+AGG 0.561192 2_1:+3526578 Msa0188340:CDS
GTGACAATGTTGAAGATGGT+TGG 0.563304 2_1:+3529963 Msa0188340:CDS
GCTTAAACTGCATTTAAAGA+GGG 0.566396 2_1:+3529652 Msa0188340:CDS
AGCCATATTAAAAGTGGCAG+GGG 0.567185 2_1:-3529873 None:intergenic
GTGTGTCCTCATGAAGGCTG+TGG 0.567957 2_1:+3527083 Msa0188340:CDS
CATTTAAAGAGGGAGCATCC+TGG 0.569801 2_1:+3529662 Msa0188340:CDS
GGAAAGACATTTATAGATGC+TGG 0.570125 2_1:+3526507 Msa0188340:CDS
TCCTCATGAAGGCTGTGGTA+AGG 0.574286 2_1:+3527088 Msa0188340:CDS
TTCCTATCGAGGATGAAGCT+TGG 0.574345 2_1:-3524738 None:intergenic
TGTTTGACCCATTTAACAGC+GGG 0.574962 2_1:-3524894 None:intergenic
AAACAAACTGCCTCTCTCCA+TGG 0.576594 2_1:-3526554 None:intergenic
ACGCCCCTTTCTCACGTCCA+AGG 0.578019 2_1:+3524869 Msa0188340:CDS
GAAGTGTATGCTGTTAAGAT+GGG 0.578315 2_1:+3525056 Msa0188340:CDS
ATATGCCCATACCCAGATTG+TGG 0.578913 2_1:+3527822 Msa0188340:CDS
AGACCTCAGGTTAAAATCCA+AGG 0.579184 2_1:-3527766 None:intergenic
CTAAAATTCTTCAATCTCTG+TGG 0.582478 2_1:+3524792 Msa0188340:five_prime_UTR
CTGCCTCTCTCCATGGATGT+GGG 0.586666 2_1:-3526547 None:intergenic
TAGCCATATTAAAAGTGGCA+GGG 0.588156 2_1:-3529874 None:intergenic
AGTTTGTTTGCCATTATGAG+GGG 0.589676 2_1:+3526568 Msa0188340:CDS
CAGGTTAAAATCCAAGGAGA+AGG 0.604105 2_1:-3527760 None:intergenic
GAACCGTATGTCGCTCCAGA+AGG 0.605176 2_1:-3529560 None:intergenic
CATATGCATGTCCTTATGAA+GGG 0.608937 2_1:+3529600 Msa0188340:CDS
ATAACCAATGTACTATGTCA+AGG 0.609060 2_1:-3530138 None:intergenic
AAACAACGAAGATGATGATG+AGG 0.613095 2_1:+3529997 Msa0188340:CDS
GAGCCTTGGACGTGAGAAAG+GGG 0.615789 2_1:-3524872 None:intergenic
GATCGTGACAATGTTGAAGA+TGG 0.616587 2_1:+3529959 Msa0188340:CDS
TATGGTGGAAAACGTTCCAA+TGG 0.620791 2_1:+3529767 Msa0188340:CDS
ACATGCATATGGGCGATCAG+AGG 0.622960 2_1:-3529588 None:intergenic
AGTGATCACGATGCTTATGG+TGG 0.628298 2_1:+3529752 Msa0188340:CDS
GGCGTCTCTCAAAGAGAGAG+TGG 0.633941 2_1:-3524851 None:intergenic
ACCTTACCACAGCCTTCATG+AGG 0.637114 2_1:-3527089 None:intergenic
AAGACGTTGTTGCCACTGGT+GGG 0.637791 2_1:+3525034 Msa0188340:CDS
CACCAAGCTTCATCCTCGAT+AGG 0.642148 2_1:+3524736 None:intergenic
AATCGCGGTAGTTTCTGACG+AGG 0.650726 2_1:+3530246 Msa0188340:three_prime_UTR
GACATTTCTTAATTCATACG+GGG 0.654030 2_1:+3527048 Msa0188340:CDS
CAGCATACACTTCCCACCAG+TGG 0.655133 2_1:-3525046 None:intergenic
CCAGTGGCAACAACGTCTTG+TGG 0.655732 2_1:-3525030 None:intergenic
ATTCCCACATCCATGGAGAG+AGG 0.655979 2_1:+3526544 Msa0188340:CDS
TTAGGAATTAGTTCCTATCG+AGG 0.656153 2_1:-3524749 None:intergenic
TGAAGACAGCGAAGAAACTG+AGG 0.661243 2_1:+3529931 Msa0188340:CDS
AGACAGCGAAGAAACTGAGG+AGG 0.668007 2_1:+3529934 Msa0188340:CDS
GGAAGAATGAATGATACCGT+AGG 0.673395 2_1:+3530162 Msa0188340:three_prime_UTR
ACATTTCTTAATTCATACGG+GGG 0.674154 2_1:+3527049 Msa0188340:CDS
TTGTTTGACCCATTTAACAG+CGG 0.696885 2_1:-3524895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATTCTATTCTAAA+TGG + chr2_1:3527938-3527957 Msa0188340:intron 10.0%
!! CATATAAAGATAAAAAAAAT+TGG - chr2_1:3528218-3528237 None:intergenic 10.0%
!!! AATATATAAATTTTCAAGTT+CGG + chr2_1:3528936-3528955 Msa0188340:intron 10.0%
!! TGTTATCTAATATTAAGTTA+AGG - chr2_1:3525410-3525429 None:intergenic 15.0%
!! CATTAAAAAAAAATGCAAAT+GGG - chr2_1:3525489-3525508 None:intergenic 15.0%
!! AATTTACCAAAAAAAAGTAA+AGG + chr2_1:3525808-3525827 Msa0188340:intron 15.0%
!! AATGTACAATAAATATTGTT+TGG + chr2_1:3527416-3527435 Msa0188340:intron 15.0%
!! TTGATTATTATAAATTTCAG+GGG - chr2_1:3528154-3528173 None:intergenic 15.0%
!! CTTGATTATTATAAATTTCA+GGG - chr2_1:3528155-3528174 None:intergenic 15.0%
!! TTTATAATAATCAAGCAAAT+TGG + chr2_1:3528160-3528179 Msa0188340:intron 15.0%
!! AAGAAAATCTTTAAACTATA+TGG + chr2_1:3528291-3528310 Msa0188340:intron 15.0%
!!! ATATATAAATTTTCAAGTTC+GGG + chr2_1:3528937-3528956 Msa0188340:intron 15.0%
!!! AATTGAAGTTTTATTAATGT+CGG + chr2_1:3529077-3529096 Msa0188340:intron 15.0%
!!! TATTTTAATACTATTTTGCA+AGG + chr2_1:3529268-3529287 Msa0188340:intron 15.0%
!! AAGAAAAAATCTAATATTGT+AGG - chr2_1:3530085-3530104 None:intergenic 15.0%
!! ATTAATATAAATTCATCCTA+CGG - chr2_1:3530181-3530200 None:intergenic 15.0%
!! AAACTTTAACAGAAAAATTG+AGG - chr2_1:3524964-3524983 None:intergenic 20.0%
!!! TTTTTCTGTTAAAGTTTGTT+TGG + chr2_1:3524967-3524986 Msa0188340:intron 20.0%
!! AACATTACAAATAACCTAAA+GGG - chr2_1:3525169-3525188 None:intergenic 20.0%
!!! TTTGTAATGTTGATTTATCA+TGG + chr2_1:3525178-3525197 Msa0188340:intron 20.0%
!! CCATTAAAAAAAAATGCAAA+TGG - chr2_1:3525490-3525509 None:intergenic 20.0%
!!! CCATTTGCATTTTTTTTTAA+TGG + chr2_1:3525487-3525506 Msa0188340:intron 20.0%
!!! ATTATGAACAGATTTTTTTG+GGG - chr2_1:3526026-3526045 None:intergenic 20.0%
!!! CATTATGAACAGATTTTTTT+GGG - chr2_1:3526027-3526046 None:intergenic 20.0%
!! CATACAATATAATAATTGCT+TGG - chr2_1:3526323-3526342 None:intergenic 20.0%
!! AATTACAAAAAATGGAAACT+AGG - chr2_1:3526778-3526797 None:intergenic 20.0%
!!! TTTCCATTTTTTGTAATTTC+AGG + chr2_1:3526780-3526799 Msa0188340:intron 20.0%
!! ACTAGATGGAAAAATTAATA+AGG - chr2_1:3526892-3526911 None:intergenic 20.0%
!!! AACTTTTTTATGAAACTAGA+TGG - chr2_1:3526906-3526925 None:intergenic 20.0%
!! AAGACATTTCTTAATTCATA+CGG + chr2_1:3527046-3527065 Msa0188340:CDS 20.0%
!! ATATTTGATCATTACAATGA+AGG - chr2_1:3527278-3527297 None:intergenic 20.0%
!! TAGAAGATGATTAATAGATT+TGG + chr2_1:3527373-3527392 Msa0188340:intron 20.0%
!! AGAAGATGATTAATAGATTT+GGG + chr2_1:3527374-3527393 Msa0188340:intron 20.0%
!!! AATTTTAGTATCATATTGTC+TGG + chr2_1:3527681-3527700 Msa0188340:intron 20.0%
!!! TTGAAATTTTGTTAATGTCA+GGG - chr2_1:3528013-3528032 None:intergenic 20.0%
!!! ATTGAAATTTTGTTAATGTC+AGG - chr2_1:3528014-3528033 None:intergenic 20.0%
!! TGATTATTATAAATTTCAGG+GGG - chr2_1:3528153-3528172 None:intergenic 20.0%
!! GCTTGATTATTATAAATTTC+AGG - chr2_1:3528156-3528175 None:intergenic 20.0%
!!! GAATATTTTTTTTTGTCACA+AGG - chr2_1:3528187-3528206 None:intergenic 20.0%
!!! AGAAAGAATAATTTTTATGC+TGG + chr2_1:3528339-3528358 Msa0188340:intron 20.0%
!! TGTTATACCTTTCAAATATT+TGG + chr2_1:3528419-3528438 Msa0188340:intron 20.0%
!! GTTATACCTTTCAAATATTT+GGG + chr2_1:3528420-3528439 Msa0188340:intron 20.0%
!!! TAAGATTTTGGACTAATAAT+TGG + chr2_1:3528796-3528815 Msa0188340:intron 20.0%
!!! TATATAAATTTTCAAGTTCG+GGG + chr2_1:3528938-3528957 Msa0188340:intron 20.0%
!!! ATTGAAGTTTTATTAATGTC+GGG + chr2_1:3529078-3529097 Msa0188340:intron 20.0%
!!! TTTTTTAGCCATATTAAAAG+TGG - chr2_1:3529882-3529901 None:intergenic 20.0%
!! AAAAAATCTAATATTGTAGG+AGG - chr2_1:3530082-3530101 None:intergenic 20.0%
!!! ATTGAAGAATTTTAGGGTTA+GGG - chr2_1:3524787-3524806 None:intergenic 25.0%
!! ACAGAGATTGAAGAATTTTA+GGG - chr2_1:3524793-3524812 None:intergenic 25.0%
!! AACAAATTCTGAGAAATCAA+TGG + chr2_1:3524815-3524834 Msa0188340:exon 25.0%
!!! AATTGAGTTGATGAAGAAAA+GGG - chr2_1:3524930-3524949 None:intergenic 25.0%
!!! AAATTGAGTTGATGAAGAAA+AGG - chr2_1:3524931-3524950 None:intergenic 25.0%
! ATCATAGCAATGTTATTATC+AGG + chr2_1:3525004-3525023 Msa0188340:intron 25.0%
! TCATAGCAATGTTATTATCA+GGG + chr2_1:3525005-3525024 Msa0188340:intron 25.0%
! ATTATGGGTGCTTAATTTAT+TGG - chr2_1:3525143-3525162 None:intergenic 25.0%
! TAACCTAAAGGGAAAATTAT+GGG - chr2_1:3525158-3525177 None:intergenic 25.0%
! ATAACCTAAAGGGAAAATTA+TGG - chr2_1:3525159-3525178 None:intergenic 25.0%
! CAACATTACAAATAACCTAA+AGG - chr2_1:3525170-3525189 None:intergenic 25.0%
! TAATGTCTAATCAGAAAGAT+AGG - chr2_1:3525230-3525249 None:intergenic 25.0%
! CAATTCATACTTGTAAAGTT+AGG - chr2_1:3525328-3525347 None:intergenic 25.0%
! CTAACTTTACAAGTATGAAT+TGG + chr2_1:3525326-3525345 Msa0188340:intron 25.0%
! GATGTTTCATAAAAACTCTA+CGG + chr2_1:3525366-3525385 Msa0188340:intron 25.0%
! GAAAATGTTACTAGTTAGAT+TGG + chr2_1:3525509-3525528 Msa0188340:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr2_1:3525772-3525791 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG + chr2_1:3525632-3525651 Msa0188340:intron 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr2_1:3525632-3525651 None:intergenic 25.0%
! CTTGAAAATTCATATGCAAA+AGG + chr2_1:3525772-3525791 Msa0188340:intron 25.0%
!!! TTTGCTCCTTTACTTTTTTT+TGG - chr2_1:3525817-3525836 None:intergenic 25.0%
!! TATCTGAAATTAAGAGATCA+CGG + chr2_1:3525841-3525860 Msa0188340:intron 25.0%
! TATGAATGAATTAATACTGC+TGG + chr2_1:3525889-3525908 Msa0188340:intron 25.0%
!! TATTTGAGATAGTTATGTCA+GGG - chr2_1:3525994-3526013 None:intergenic 25.0%
!!! TTATGAACAGATTTTTTTGG+GGG - chr2_1:3526025-3526044 None:intergenic 25.0%
!!! GCATTATGAACAGATTTTTT+TGG - chr2_1:3526028-3526047 None:intergenic 25.0%
! AGATTGTTATGAAAGATAAC+TGG - chr2_1:3526188-3526207 None:intergenic 25.0%
!!! ATGGTTTTATTGATGCAAAA+AGG + chr2_1:3526228-3526247 Msa0188340:intron 25.0%
!! TTCTTTTTCCTTTTCTTTCA+AGG - chr2_1:3526418-3526437 None:intergenic 25.0%
! CTTTAATGTTGTAACATACT+TGG + chr2_1:3526657-3526676 Msa0188340:intron 25.0%
! AGCTTCACAAAAATTGTTAA+AGG - chr2_1:3526695-3526714 None:intergenic 25.0%
! ACACCTGAAATTACAAAAAA+TGG - chr2_1:3526786-3526805 None:intergenic 25.0%
! AGACATTTCTTAATTCATAC+GGG + chr2_1:3527047-3527066 Msa0188340:CDS 25.0%
! CTTAAGAGATCAATAAACAA+GGG - chr2_1:3527132-3527151 None:intergenic 25.0%
!! TTTTGAATCACCTTTATGTT+TGG + chr2_1:3527169-3527188 Msa0188340:intron 25.0%
! GAAAAAACAGATCAGTAATT+AGG - chr2_1:3527256-3527275 None:intergenic 25.0%
! AAACAATAATACCACAAAGA+AGG - chr2_1:3527617-3527636 None:intergenic 25.0%
! CTTTGTGGTATTATTGTTTA+AGG + chr2_1:3527618-3527637 Msa0188340:intron 25.0%
!! AATTATCTTTTCCAAATGCA+AGG - chr2_1:3527665-3527684 None:intergenic 25.0%
! CTATTCTAAATGGAGTAAAT+AGG + chr2_1:3527948-3527967 Msa0188340:intron 25.0%
! ATTGACGAAACTTACAATTT+CGG - chr2_1:3529107-3529126 None:intergenic 25.0%
!! TGAAATTTTGTTAATGTCAG+GGG - chr2_1:3528012-3528031 None:intergenic 25.0%
! TAGGTTTATCTTTCAAAATG+TGG - chr2_1:3528449-3528468 None:intergenic 25.0%
! TCATTAAAGTAACTGATCTT+AGG - chr2_1:3528468-3528487 None:intergenic 25.0%
!! GGAATTTTTCTGTCTATAAT+GGG + chr2_1:3528528-3528547 Msa0188340:intron 25.0%
!! TTTCTTTTTGCAATTACCTA+TGG + chr2_1:3528595-3528614 Msa0188340:intron 25.0%
! TTTCCAAAATTCATATGAAG+TGG + chr2_1:3528651-3528670 Msa0188340:intron 25.0%
!! TATCCACTTCATATGAATTT+TGG - chr2_1:3528657-3528676 None:intergenic 25.0%
!! TTGGTGCAAATATAAGATTT+TGG + chr2_1:3528784-3528803 Msa0188340:intron 25.0%
!! TTGGTGCAAATATAAGATTT+TGG + chr2_1:3528784-3528803 Msa0188340:intron 25.0%
!! ACTTGTTGATCATAATCATT+GGG + chr2_1:3528901-3528920 Msa0188340:intron 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG + chr2_1:3528939-3528958 Msa0188340:intron 25.0%
! TGACTAACAGAAAAATTTGA+CGG + chr2_1:3529014-3529033 Msa0188340:intron 25.0%
! ATTAACGTTGTACAATTTCA+GGG + chr2_1:3529050-3529069 Msa0188340:intron 25.0%
!!! TTGAAGTTTTATTAATGTCG+GGG + chr2_1:3529079-3529098 Msa0188340:intron 25.0%
!! CACATTTAGAATGAGTAAAT+AGG - chr2_1:3529144-3529163 None:intergenic 25.0%
!!! ATGATTTTAATATGTGCACT+TGG + chr2_1:3529204-3529223 Msa0188340:intron 25.0%
!!! AATTTTTGATTGAGCACTTT+TGG + chr2_1:3529395-3529414 Msa0188340:intron 25.0%
! TGTCAATCAAAAATTGTTTG+AGG - chr2_1:3529453-3529472 None:intergenic 25.0%
!! TAGCATTTTCATCATTTATG+TGG - chr2_1:3529688-3529707 None:intergenic 25.0%
! TTAATATGGCTAAAAAACCT+TGG + chr2_1:3529885-3529904 Msa0188340:CDS 25.0%
TTAGGGTTTGAAGAGAAATT+AGG - chr2_1:3524770-3524789 None:intergenic 30.0%
!!! GATTGAAGAATTTTAGGGTT+AGG - chr2_1:3524788-3524807 None:intergenic 30.0%
! CACAGAGATTGAAGAATTTT+AGG - chr2_1:3524794-3524813 None:intergenic 30.0%
CTAAAATTCTTCAATCTCTG+TGG + chr2_1:3524792-3524811 Msa0188340:five_prime_UTR 30.0%
!! ATTGAGTTGATGAAGAAAAG+GGG - chr2_1:3524929-3524948 None:intergenic 30.0%
AGCTCAATTGACAGTAAAAA+AGG - chr2_1:3525094-3525113 None:intergenic 30.0%
TCATGTTCTTAATCAAACGA+TGG + chr2_1:3525292-3525311 Msa0188340:intron 30.0%
TAAGATTCATGTGCAAACAT+GGG + chr2_1:3525689-3525708 Msa0188340:intron 30.0%
TCATATGCAAAAGGATCAAA+AGG + chr2_1:3525781-3525800 Msa0188340:intron 30.0%
CATATGCAAAAGGATCAAAA+GGG + chr2_1:3525782-3525801 Msa0188340:intron 30.0%
! ATCTGAAATTAAGAGATCAC+GGG + chr2_1:3525842-3525861 Msa0188340:intron 30.0%
! GTATTTGAGATAGTTATGTC+AGG - chr2_1:3525995-3526014 None:intergenic 30.0%
AAGATAACTGGAAAGCAAAT+TGG - chr2_1:3526176-3526195 None:intergenic 30.0%
! CAAACTCATGTATTTCTGAA+TGG + chr2_1:3526209-3526228 Msa0188340:intron 30.0%
!!! CTGTGTTTTGTTTTCTTTAG+AGG + chr2_1:3526380-3526399 Msa0188340:intron 30.0%
!! CTTTTCTTTCAAGGCATTTA+TGG - chr2_1:3526409-3526428 None:intergenic 30.0%
CATAAATGCCTTGAAAGAAA+AGG + chr2_1:3526407-3526426 Msa0188340:CDS 30.0%
!! AGAAAAAGTACTTCAGTAGT+TGG - chr2_1:3526468-3526487 None:intergenic 30.0%
! CTTTTTCTTTGTAGCTATGA+AGG + chr2_1:3526480-3526499 Msa0188340:CDS 30.0%
! AGGTAATGAAACTGTTTCTT+CGG + chr2_1:3526598-3526617 Msa0188340:intron 30.0%
CAAAAAATGGAAACTAGGAT+GGG - chr2_1:3526773-3526792 None:intergenic 30.0%
ACAAAAAATGGAAACTAGGA+TGG - chr2_1:3526774-3526793 None:intergenic 30.0%
! ATTTCAGGTGTTGTAATTTC+AGG + chr2_1:3526795-3526814 Msa0188340:intron 30.0%
GATCTATCTTGAGCAATTAT+TGG - chr2_1:3526870-3526889 None:intergenic 30.0%
TTCTAAATAGACCTGACATT+TGG - chr2_1:3526970-3526989 None:intergenic 30.0%
GACATTTCTTAATTCATACG+GGG + chr2_1:3527048-3527067 Msa0188340:CDS 30.0%
ACATTTCTTAATTCATACGG+GGG + chr2_1:3527049-3527068 Msa0188340:CDS 30.0%
CCTTAAGAGATCAATAAACA+AGG - chr2_1:3527133-3527152 None:intergenic 30.0%
! CCTTGTTTATTGATCTCTTA+AGG + chr2_1:3527130-3527149 Msa0188340:intron 30.0%
ATGGAATATGCCAAACATAA+AGG - chr2_1:3527182-3527201 None:intergenic 30.0%
! AGAGTTTTTGCTGATATTCA+GGG - chr2_1:3527209-3527228 None:intergenic 30.0%
! AAGAGTTTTTGCTGATATTC+AGG - chr2_1:3527210-3527229 None:intergenic 30.0%
TTCATATCGGATTCAATCAT+GGG - chr2_1:3527546-3527565 None:intergenic 30.0%
AATGATTCAAACCTTCTTTG+TGG + chr2_1:3527603-3527622 Msa0188340:intron 30.0%
! TTAACCAACCTTTTCATGAT+GGG - chr2_1:3527892-3527911 None:intergenic 30.0%
! ATTAACCAACCTTTTCATGA+TGG - chr2_1:3527893-3527912 None:intergenic 30.0%
TTGACGAAACTTACAATTTC+GGG - chr2_1:3529108-3529127 None:intergenic 30.0%
! AAATTTTGTTAATGTCAGGG+GGG - chr2_1:3528010-3528029 None:intergenic 30.0%
! GAAATTTTGTTAATGTCAGG+GGG - chr2_1:3528011-3528030 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+GGG - chr2_1:3528042-3528061 None:intergenic 30.0%
TAACGGAAAAATTTGACAGA+GGG - chr2_1:3528074-3528093 None:intergenic 30.0%
! GATATCTGAATTTTTCGCAA+AGG + chr2_1:3528243-3528262 Msa0188340:intron 30.0%
! TTTTTCGCAAAGGATCAAAT+AGG + chr2_1:3528253-3528272 Msa0188340:intron 30.0%
!! TCATGTAATTAGCTTTAACC+TGG + chr2_1:3528395-3528414 Msa0188340:intron 30.0%
!! TTAAAGTTAAGCTTGCTACT+TGG + chr2_1:3528502-3528521 Msa0188340:intron 30.0%
! GGGAATTTTTCTGTCTATAA+TGG + chr2_1:3528527-3528546 Msa0188340:intron 30.0%
!! CTCATCAAGTTTGTTATTCA+TGG + chr2_1:3528561-3528580 Msa0188340:intron 30.0%
!!! CTGCTATTTTACTTCTTTGT+TGG + chr2_1:3528696-3528715 Msa0188340:intron 30.0%
! ACTCTAAAGATCATTGCTAT+TGG + chr2_1:3528765-3528784 Msa0188340:intron 30.0%
! TTTTGGACTAATAATTGGCT+TGG + chr2_1:3528801-3528820 Msa0188340:intron 30.0%
! TTTGGACTAATAATTGGCTT+GGG + chr2_1:3528802-3528821 Msa0188340:intron 30.0%
! CACTTGTTGATCATAATCAT+TGG + chr2_1:3528900-3528919 Msa0188340:intron 30.0%
CTTGTTGATCATAATCATTG+GGG + chr2_1:3528902-3528921 Msa0188340:intron 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG + chr2_1:3528940-3528959 Msa0188340:intron 30.0%
TAACAGAAAAATTTGACGGA+GGG + chr2_1:3529018-3529037 Msa0188340:intron 30.0%
GATTAACGTTGTACAATTTC+AGG + chr2_1:3529049-3529068 Msa0188340:intron 30.0%
TTAACGTTGTACAATTTCAG+GGG + chr2_1:3529051-3529070 Msa0188340:intron 30.0%
!!! TGAAGTTTTATTAATGTCGG+GGG + chr2_1:3529080-3529099 Msa0188340:intron 30.0%
TGACGAAACTTACAATTTCA+AGG + chr2_1:3529109-3529128 Msa0188340:intron 30.0%
GACGAAACTTACAATTTCAA+GGG + chr2_1:3529110-3529129 Msa0188340:intron 30.0%
ACGAAACTTACAATTTCAAG+GGG + chr2_1:3529111-3529130 Msa0188340:intron 30.0%
AAAATCATACTTCATGAGAC+AGG - chr2_1:3529192-3529211 None:intergenic 30.0%
GCTCAATCAAAAATTGTTTG+AGG - chr2_1:3529390-3529409 None:intergenic 30.0%
!! GTTTTTGTTTGCTTTTCTGA+AGG - chr2_1:3529533-3529552 None:intergenic 30.0%
AGCTTAAACTGCATTTAAAG+AGG + chr2_1:3529651-3529670 Msa0188340:CDS 30.0%
GCTTAAACTGCATTTAAAGA+GGG + chr2_1:3529652-3529671 Msa0188340:CDS 30.0%
! TTTTCCTTGACATAGTACAT+TGG + chr2_1:3530134-3530153 Msa0188340:three_prime_UTR 30.0%
ATAACCAATGTACTATGTCA+AGG - chr2_1:3530141-3530160 None:intergenic 30.0%
! TGACATAGTACATTGGTTAT+CGG + chr2_1:3530141-3530160 Msa0188340:three_prime_UTR 30.0%
TTAGGAATTAGTTCCTATCG+AGG - chr2_1:3524752-3524771 None:intergenic 35.0%
TTGTTTGACCCATTTAACAG+CGG - chr2_1:3524898-3524917 None:intergenic 35.0%
CTGTTAAATGGGTCAAACAA+TGG + chr2_1:3524898-3524917 Msa0188340:CDS 35.0%
GAAGTGTATGCTGTTAAGAT+GGG + chr2_1:3525056-3525075 Msa0188340:CDS 35.0%
AAAATGCAAATGGGCCAAAA+GGG - chr2_1:3525480-3525499 None:intergenic 35.0%
AAAAATGCAAATGGGCCAAA+AGG - chr2_1:3525481-3525500 None:intergenic 35.0%
!!! TGGTTTTTTCTCTTTCGTTC+CGG + chr2_1:3525529-3525548 Msa0188340:intron 35.0%
TTCATATGCAAACGGATCAA+GGG - chr2_1:3525613-3525632 None:intergenic 35.0%
ATTCATATGCAAACGGATCA+AGG - chr2_1:3525614-3525633 None:intergenic 35.0%
CTAAGATTCATGTGCAAACA+TGG + chr2_1:3525688-3525707 Msa0188340:intron 35.0%
GTTCTCAGTCTTCAAATCTA+TGG - chr2_1:3525671-3525690 None:intergenic 35.0%
GTAATGCTTCATTTCTACGT+TGG + chr2_1:3526105-3526124 Msa0188340:intron 35.0%
AGTTGAATGTTAAGCAAGCT+TGG + chr2_1:3526290-3526309 Msa0188340:intron 35.0%
GGAAAGACATTTATAGATGC+TGG + chr2_1:3526507-3526526 Msa0188340:CDS 35.0%
! CAGTTTGTTTGCCATTATGA+GGG + chr2_1:3526567-3526586 Msa0188340:CDS 35.0%
! AGTTTGTTTGCCATTATGAG+GGG + chr2_1:3526568-3526587 Msa0188340:CDS 35.0%
AGTATAGGTGAGTAAAGACA+TGG - chr2_1:3526750-3526769 None:intergenic 35.0%
! TGTATGCTGGTTATGTTGTA+TGG + chr2_1:3526838-3526857 Msa0188340:intron 35.0%
TCTTATGTTTGCCAAATGTC+AGG + chr2_1:3526956-3526975 Msa0188340:intron 35.0%
GTTTCTGTTGCAGAAATTTC+TGG + chr2_1:3527007-3527026 Msa0188340:intron 35.0%
AGATCAATAAACAAGGGCAA+TGG - chr2_1:3527126-3527145 None:intergenic 35.0%
GTATATGACTATTCAGCAGT+GGG + chr2_1:3527332-3527351 Msa0188340:intron 35.0%
TCATATCGGATTCAATCATG+GGG - chr2_1:3527545-3527564 None:intergenic 35.0%
CTTCATATCGGATTCAATCA+TGG - chr2_1:3527547-3527566 None:intergenic 35.0%
TCCGATATGAAGTTAGTTCA+TGG + chr2_1:3527555-3527574 Msa0188340:intron 35.0%
GCCATGAACTAACTTCATAT+CGG - chr2_1:3527559-3527578 None:intergenic 35.0%
ACAAGTCAAAACCTTGCATT+TGG + chr2_1:3527651-3527670 Msa0188340:intron 35.0%
!! TTTTGTTTGTGCCAATATGC+AGG + chr2_1:3527737-3527756 Msa0188340:intron 35.0%
TAGATCACAGTTACACAAAC+AGG - chr2_1:3527920-3527939 None:intergenic 35.0%
TGACGAAACTTACAATTTCG+GGG - chr2_1:3527983-3528002 None:intergenic 35.0%
TTAACGTTGTGCAATTTCAG+GGG - chr2_1:3528041-3528060 None:intergenic 35.0%
GATTAACGTTGTGCAATTTC+AGG - chr2_1:3528043-3528062 None:intergenic 35.0%
AACGGAAAAATTTGACAGAG+GGG - chr2_1:3528073-3528092 None:intergenic 35.0%
CTAACGGAAAAATTTGACAG+AGG - chr2_1:3528075-3528094 None:intergenic 35.0%
! CAAAACGTCATGTTGACTAA+CGG - chr2_1:3528091-3528110 None:intergenic 35.0%
ACATAAGTGCAAAACTTCAG+GGG - chr2_1:3528971-3528990 None:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG - chr2_1:3528970-3528989 None:intergenic 35.0%
! ATTTGAAAGGTATAACAGCC+AGG - chr2_1:3528416-3528435 None:intergenic 35.0%
TGGACTCCCAAATATTTGAA+AGG - chr2_1:3528429-3528448 None:intergenic 35.0%
TTTCGAAGCAACTTGATCAA+TGG + chr2_1:3528628-3528647 Msa0188340:intron 35.0%
!! ACTAATAATTGGCTTGGGAT+TGG + chr2_1:3528807-3528826 Msa0188340:intron 35.0%
CACATAAGTGCAAAACTTCA+GGG + chr2_1:3528970-3528989 Msa0188340:intron 35.0%
ACATAAGTGCAAAACTTCAG+GGG + chr2_1:3528971-3528990 Msa0188340:intron 35.0%
CTAACAGAAAAATTTGACGG+AGG + chr2_1:3529017-3529036 Msa0188340:intron 35.0%
AACAGAAAAATTTGACGGAG+GGG + chr2_1:3529019-3529038 Msa0188340:intron 35.0%
TAACGTTGTACAATTTCAGG+GGG + chr2_1:3529052-3529071 Msa0188340:intron 35.0%
!!! GAAGTTTTATTAATGTCGGG+GGG + chr2_1:3529081-3529100 Msa0188340:intron 35.0%
!!! AAGTTTTATTAATGTCGGGG+GGG + chr2_1:3529082-3529101 Msa0188340:intron 35.0%
CGAAACTTACAATTTCAAGG+GGG + chr2_1:3529112-3529131 Msa0188340:intron 35.0%
GTGTTCACAATCACAATAGA+TGG + chr2_1:3529161-3529180 Msa0188340:intron 35.0%
TACTTTATCGGCACATCTAT+TGG - chr2_1:3529500-3529519 None:intergenic 35.0%
!! TTTGTTTGCTTTTCTGAAGG+AGG - chr2_1:3529530-3529549 None:intergenic 35.0%
CTTCATAAGGACATGCATAT+GGG - chr2_1:3529601-3529620 None:intergenic 35.0%
CATATGCATGTCCTTATGAA+GGG + chr2_1:3529600-3529619 Msa0188340:CDS 35.0%
! TTTTCATCATTTATGTGGCC+AGG - chr2_1:3529683-3529702 None:intergenic 35.0%
! TTGCTTCTGACTTTTACCAT+TGG - chr2_1:3529786-3529805 None:intergenic 35.0%
TAGCCATATTAAAAGTGGCA+GGG - chr2_1:3529877-3529896 None:intergenic 35.0%
TTAGCCATATTAAAAGTGGC+AGG - chr2_1:3529878-3529897 None:intergenic 35.0%
TCGTAAGTTTCTTCTTTCAC+TGG - chr2_1:3529911-3529930 None:intergenic 35.0%
! AAACAACGAAGATGATGATG+AGG + chr2_1:3529997-3530016 Msa0188340:CDS 35.0%
TGTTTGACCCATTTAACAGC+GGG - chr2_1:3524897-3524916 None:intergenic 40.0%
! GGAAGTGTATGCTGTTAAGA+TGG + chr2_1:3525055-3525074 Msa0188340:CDS 40.0%
ATGCTGTTAAGATGGGTAAC+AGG + chr2_1:3525063-3525082 Msa0188340:CDS 40.0%
! GCACCCATAATTTTCCCTTT+AGG + chr2_1:3525152-3525171 Msa0188340:intron 40.0%
CTACGGCAAAATTACACTTC+TGG + chr2_1:3525383-3525402 Msa0188340:intron 40.0%
TCATATGCAAACGGATCAAG+GGG - chr2_1:3525612-3525631 None:intergenic 40.0%
TTTGAAGACTGAGAACTCAC+AGG - chr2_1:3525726-3525745 None:intergenic 40.0%
TTTGAAGACTGAGAACTCAC+AGG + chr2_1:3525726-3525745 Msa0188340:intron 40.0%
TCATTCATACATGCAGCGTT+TGG - chr2_1:3525878-3525897 None:intergenic 40.0%
AAGGTTGTACTAGTACGACA+TGG - chr2_1:3525948-3525967 None:intergenic 40.0%
CTGTTCATGTGTGCTATGAA+AGG - chr2_1:3525967-3525986 None:intergenic 40.0%
TTCTAGTCTACCCTACTAAG+TGG + chr2_1:3526053-3526072 Msa0188340:intron 40.0%
TCTAGTCTACCCTACTAAGT+GGG + chr2_1:3526054-3526073 Msa0188340:intron 40.0%
! AAGCCTTATCCCACTTAGTA+GGG - chr2_1:3526066-3526085 None:intergenic 40.0%
AAGTACTTCAGTAGTTGGCT+CGG - chr2_1:3526463-3526482 None:intergenic 40.0%
TTATAGATGCTGGTGCTTTG+AGG + chr2_1:3526517-3526536 Msa0188340:CDS 40.0%
! GCAGTTTGTTTGCCATTATG+AGG + chr2_1:3526566-3526585 Msa0188340:CDS 40.0%
CAAGCACAGAAATGCATGTT+AGG + chr2_1:3526634-3526653 Msa0188340:intron 40.0%
AGTAACACACACATGTATGC+TGG + chr2_1:3526825-3526844 Msa0188340:intron 40.0%
! GATTTTGTGTGTCCTCATGA+AGG + chr2_1:3527077-3527096 Msa0188340:CDS 40.0%
TGCTGATATTCAGGGTATGA+TGG - chr2_1:3527201-3527220 None:intergenic 40.0%
GGTATATGACTATTCAGCAG+TGG + chr2_1:3527331-3527350 Msa0188340:intron 40.0%
ACTGTAAATCACCGTTTCCA+TGG + chr2_1:3527456-3527475 Msa0188340:intron 40.0%
CAGGTTAAAATCCAAGGAGA+AGG - chr2_1:3527763-3527782 None:intergenic 40.0%
!! TCTCCTTGGATTTTAACCTG+AGG + chr2_1:3527763-3527782 Msa0188340:CDS 40.0%
AGACCTCAGGTTAAAATCCA+AGG - chr2_1:3527769-3527788 None:intergenic 40.0%
CATTGCTTCCCATCATGAAA+AGG + chr2_1:3527881-3527900 Msa0188340:CDS 40.0%
ACGAAACTTACAATTTCGGG+GGG - chr2_1:3527981-3528000 None:intergenic 40.0%
GACGAAACTTACAATTTCGG+GGG - chr2_1:3527982-3528001 None:intergenic 40.0%
TAACGTTGTGCAATTTCAGG+GGG - chr2_1:3528040-3528059 None:intergenic 40.0%
ACGGAAAAATTTGACAGAGG+GGG - chr2_1:3528072-3528091 None:intergenic 40.0%
ATAAGTGCAAAACTTCAGGG+GGG - chr2_1:3528973-3528992 None:intergenic 40.0%
CATAAGTGCAAAACTTCAGG+GGG - chr2_1:3528972-3528991 None:intergenic 40.0%
GCACATAAGTGCAAAACTTC+AGG - chr2_1:3528969-3528988 None:intergenic 40.0%
!! AGTTAAGCTTGCTACTTGGA+AGG + chr2_1:3528506-3528525 Msa0188340:intron 40.0%
!! GTTAAGCTTGCTACTTGGAA+GGG + chr2_1:3528507-3528526 Msa0188340:intron 40.0%
AGTTGCTTCGAAAGATGTAC+AGG - chr2_1:3528621-3528640 None:intergenic 40.0%
ACAAGTGAGCAACAAATGTG+AGG - chr2_1:3528887-3528906 None:intergenic 40.0%
GCACATAAGTGCAAAACTTC+AGG + chr2_1:3528969-3528988 Msa0188340:intron 40.0%
CATAAGTGCAAAACTTCAGG+GGG + chr2_1:3528972-3528991 Msa0188340:intron 40.0%
ACAGAAAAATTTGACGGAGG+GGG + chr2_1:3529020-3529039 Msa0188340:intron 40.0%
AACGTTGTACAATTTCAGGG+GGG + chr2_1:3529053-3529072 Msa0188340:intron 40.0%
CGTCAAATGAAACCTCTAGA+TGG - chr2_1:3529233-3529252 None:intergenic 40.0%
! ATGATGCATGACTGCACTTT+TGG + chr2_1:3529332-3529351 Msa0188340:intron 40.0%
GGAGGAGTTGCATACTTTAT+CGG - chr2_1:3529512-3529531 None:intergenic 40.0%
ACAAAAACTGCTAGACCTTC+TGG + chr2_1:3529545-3529564 Msa0188340:CDS 40.0%
CCTTCATAAGGACATGCATA+TGG - chr2_1:3529602-3529621 None:intergenic 40.0%
CCATATGCATGTCCTTATGA+AGG + chr2_1:3529599-3529618 Msa0188340:CDS 40.0%
! TCCTTATGAAGGGTGTGAAA+AGG + chr2_1:3529610-3529629 Msa0188340:CDS 40.0%
TGAAAATGCTATGCATGCTC+TGG + chr2_1:3529697-3529716 Msa0188340:CDS 40.0%
! TATGGTGGAAAACGTTCCAA+TGG + chr2_1:3529767-3529786 Msa0188340:CDS 40.0%
GTAAAAGTCAGAAGCAAAGC+AGG + chr2_1:3529789-3529808 Msa0188340:CDS 40.0%
!!! GGCATTTTCAAGTTTGGCTT+GGG - chr2_1:3529815-3529834 None:intergenic 40.0%
!!! AGGCATTTTCAAGTTTGGCT+TGG - chr2_1:3529816-3529835 None:intergenic 40.0%
!!! GAAGGAGGCATTTTCAAGTT+TGG - chr2_1:3529821-3529840 None:intergenic 40.0%
TTACGCTGAGCAACTTTAGA+AGG - chr2_1:3529839-3529858 None:intergenic 40.0%
! TCTAAAGTTGCTCAGCGTAA+AGG + chr2_1:3529839-3529858 Msa0188340:CDS 40.0%
CTAAAGTTGCTCAGCGTAAA+GGG + chr2_1:3529840-3529859 Msa0188340:CDS 40.0%
ATATTAAAAGTGGCAGGGGT+TGG - chr2_1:3529872-3529891 None:intergenic 40.0%
!!! AACCCCTGCCACTTTTAATA+TGG + chr2_1:3529871-3529890 Msa0188340:CDS 40.0%
AGCCATATTAAAAGTGGCAG+GGG - chr2_1:3529876-3529895 None:intergenic 40.0%
GATCGTGACAATGTTGAAGA+TGG + chr2_1:3529959-3529978 Msa0188340:CDS 40.0%
GTGACAATGTTGAAGATGGT+TGG + chr2_1:3529963-3529982 Msa0188340:CDS 40.0%
GGAAGAATGAATGATACCGT+AGG + chr2_1:3530162-3530181 Msa0188340:three_prime_UTR 40.0%
! ATATTTTCTGCTGCGAATCG+CGG + chr2_1:3530231-3530250 Msa0188340:three_prime_UTR 40.0%
TTCCTATCGAGGATGAAGCT+TGG - chr2_1:3524741-3524760 None:intergenic 45.0%
! TCCCGTCAATTTAGCCCTTT+TGG + chr2_1:3525463-3525482 Msa0188340:intron 45.0%
GCCAAAAGGGCTAAATTGAC+GGG - chr2_1:3525467-3525486 None:intergenic 45.0%
GGCCAAAAGGGCTAAATTGA+CGG - chr2_1:3525468-3525487 None:intergenic 45.0%
! TTTGAGGTCCTGGTTCAAAC+CGG - chr2_1:3525551-3525570 None:intergenic 45.0%
ATCCTGCTGCTCAAACAAGA+TGG + chr2_1:3525577-3525596 Msa0188340:intron 45.0%
TCCTGCTGCTCAAACAAGAT+GGG + chr2_1:3525578-3525597 Msa0188340:intron 45.0%
CATATGCAAACGGATCAAGG+GGG - chr2_1:3525611-3525630 None:intergenic 45.0%
TCATGTGCAAACATGGGTGA+AGG + chr2_1:3525695-3525714 Msa0188340:intron 45.0%
CTACCCTACTAAGTGGGATA+AGG + chr2_1:3526060-3526079 Msa0188340:intron 45.0%
! CAAGCCTTATCCCACTTAGT+AGG - chr2_1:3526067-3526086 None:intergenic 45.0%
CTACTAAGTGGGATAAGGCT+TGG + chr2_1:3526065-3526084 Msa0188340:intron 45.0%
! ATAAGGCTTGGTTGTGTTGG+TGG + chr2_1:3526077-3526096 Msa0188340:intron 45.0%
! AGTACTTCAGTAGTTGGCTC+GGG - chr2_1:3526462-3526481 None:intergenic 45.0%
CTTTGTAGCTATGAAGGCTG+TGG + chr2_1:3526486-3526505 Msa0188340:CDS 45.0%
AAACAAACTGCCTCTCTCCA+TGG - chr2_1:3526557-3526576 None:intergenic 45.0%
! GGAAACTAGGATGGGAGTAT+AGG - chr2_1:3526765-3526784 None:intergenic 45.0%
TCTTAATTCATACGGGGGAG+AGG + chr2_1:3527054-3527073 Msa0188340:CDS 45.0%
CTTAATTCATACGGGGGAGA+GGG + chr2_1:3527055-3527074 Msa0188340:CDS 45.0%
ACCGTTTCCATGGTCACTAT+GGG + chr2_1:3527466-3527485 Msa0188340:intron 45.0%
ACCCATAGTGACCATGGAAA+CGG - chr2_1:3527470-3527489 None:intergenic 45.0%
TTCGAAACCCATAGTGACCA+TGG - chr2_1:3527476-3527495 None:intergenic 45.0%
ATATGCCCATACCCAGATTG+TGG + chr2_1:3527822-3527841 Msa0188340:CDS 45.0%
TATGCCCATACCCAGATTGT+GGG + chr2_1:3527823-3527842 Msa0188340:CDS 45.0%
TCTTCCCACAATCTGGGTAT+GGG - chr2_1:3527830-3527849 None:intergenic 45.0%
CGTATCTCTTCCCACAATCT+GGG - chr2_1:3527836-3527855 None:intergenic 45.0%
GCTTCCCATCATGAAAAGGT+TGG + chr2_1:3527885-3527904 Msa0188340:intron 45.0%
CGAAACTTACAATTTCGGGG+GGG - chr2_1:3527980-3527999 None:intergenic 45.0%
AACGTTGTGCAATTTCAGGG+GGG - chr2_1:3528039-3528058 None:intergenic 45.0%
! CAAGCATTGCACTTCAGACA+GGG - chr2_1:3528374-3528393 None:intergenic 45.0%
TCGAAAGATGTACAGGCCAT+AGG - chr2_1:3528614-3528633 None:intergenic 45.0%
TGCACTTGGTTTCCATCTAG+AGG + chr2_1:3529218-3529237 Msa0188340:intron 45.0%
TATTGGTGTACTCTGCAGTG+AGG - chr2_1:3529483-3529502 None:intergenic 45.0%
! GCCTTTTCACACCCTTCATA+AGG - chr2_1:3529614-3529633 None:intergenic 45.0%
!! CATTTAAAGAGGGAGCATCC+TGG + chr2_1:3529662-3529681 Msa0188340:CDS 45.0%
GCAAGTGATCACGATGCTTA+TGG + chr2_1:3529749-3529768 Msa0188340:CDS 45.0%
AGTGATCACGATGCTTATGG+TGG + chr2_1:3529752-3529771 Msa0188340:CDS 45.0%
GTTTCTTCTTTCACTGGCCA+AGG - chr2_1:3529905-3529924 None:intergenic 45.0%
TGAAGACAGCGAAGAAACTG+AGG + chr2_1:3529931-3529950 Msa0188340:CDS 45.0%
GAAGATGGTTGGAGATATGC+TGG + chr2_1:3529974-3529993 Msa0188340:CDS 45.0%
!! ATATAAAGATAAAAAAAATT+GGG - chr2_1:3528217-3528236 None:intergenic 5.0%
CAAGGCTCCCGCTGTTAAAT+GGG + chr2_1:3524887-3524906 Msa0188340:CDS 50.0%
AAGACGTTGTTGCCACTGGT+GGG + chr2_1:3525034-3525053 Msa0188340:CDS 50.0%
! CTTTCGTTCCGGTTTGAACC+AGG + chr2_1:3525540-3525559 Msa0188340:intron 50.0%
CTTGTTTGAGCAGCAGGATG+AGG - chr2_1:3525576-3525595 None:intergenic 50.0%
! GGGATAAGGCTTGGTTGTGT+TGG + chr2_1:3526074-3526093 Msa0188340:intron 50.0%
!! AGGAAGCATTCCCACATCCA+TGG + chr2_1:3526537-3526556 Msa0188340:CDS 50.0%
ATTCCCACATCCATGGAGAG+AGG + chr2_1:3526544-3526563 Msa0188340:CDS 50.0%
GTTTGCCATTATGAGGGGTG+TGG + chr2_1:3526573-3526592 Msa0188340:CDS 50.0%
CCTTTCCACACCCCTCATAA+TGG - chr2_1:3526581-3526600 None:intergenic 50.0%
! CCATTATGAGGGGTGTGGAA+AGG + chr2_1:3526578-3526597 Msa0188340:CDS 50.0%
TCCTCATGAAGGCTGTGGTA+AGG + chr2_1:3527088-3527107 Msa0188340:CDS 50.0%
ACCTTACCACAGCCTTCATG+AGG - chr2_1:3527092-3527111 None:intergenic 50.0%
!! GCTCTAAAGCTTCAGCTGCA+AGG + chr2_1:3527302-3527321 Msa0188340:intron 50.0%
GCTTCAGCTGCAAGGTAATG+AGG + chr2_1:3527310-3527329 Msa0188340:intron 50.0%
CACCGTTTCCATGGTCACTA+TGG + chr2_1:3527465-3527484 Msa0188340:intron 50.0%
CAAGGAGAAGGCCTGCATAT+TGG - chr2_1:3527751-3527770 None:intergenic 50.0%
CAATATGCAGGCCTTCTCCT+TGG + chr2_1:3527749-3527768 Msa0188340:intron 50.0%
GTGTCTTCATGTGAGACCTC+AGG - chr2_1:3527782-3527801 None:intergenic 50.0%
CTCTTCCCACAATCTGGGTA+TGG - chr2_1:3527831-3527850 None:intergenic 50.0%
GCGTATCTCTTCCCACAATC+TGG - chr2_1:3527837-3527856 None:intergenic 50.0%
! GCAAGCATTGCACTTCAGAC+AGG - chr2_1:3528375-3528394 None:intergenic 50.0%
!! AGACCTTCTGGAGCGACATA+CGG + chr2_1:3529557-3529576 Msa0188340:CDS 50.0%
!! TTCTGGAGCGACATACGGTT+CGG + chr2_1:3529562-3529581 Msa0188340:CDS 50.0%
ACATGCATATGGGCGATCAG+AGG - chr2_1:3529591-3529610 None:intergenic 50.0%
! CGCTGAGCAACTTTAGAAGG+AGG - chr2_1:3529836-3529855 None:intergenic 50.0%
AGACAGCGAAGAAACTGAGG+AGG + chr2_1:3529934-3529953 Msa0188340:CDS 50.0%
AATCGCGGTAGTTTCTGACG+AGG + chr2_1:3530246-3530265 Msa0188340:three_prime_UTR 50.0%
GGCGTCTCTCAAAGAGAGAG+TGG - chr2_1:3524854-3524873 None:intergenic 55.0%
GAGCCTTGGACGTGAGAAAG+GGG - chr2_1:3524875-3524894 None:intergenic 55.0%
GGAGCCTTGGACGTGAGAAA+GGG - chr2_1:3524876-3524895 None:intergenic 55.0%
CCATTTAACAGCGGGAGCCT+TGG - chr2_1:3524889-3524908 None:intergenic 55.0%
CCAAGGCTCCCGCTGTTAAA+TGG + chr2_1:3524886-3524905 Msa0188340:CDS 55.0%
CCAGTGGCAACAACGTCTTG+TGG - chr2_1:3525033-3525052 None:intergenic 55.0%
CCACAAGACGTTGTTGCCAC+TGG + chr2_1:3525030-3525049 Msa0188340:CDS 55.0%
CAAGACGTTGTTGCCACTGG+TGG + chr2_1:3525033-3525052 Msa0188340:CDS 55.0%
CAGCATACACTTCCCACCAG+TGG - chr2_1:3525049-3525068 None:intergenic 55.0%
! GGATGAGGAGTTTGAGGTCC+TGG - chr2_1:3525561-3525580 None:intergenic 55.0%
GCAGCAGGATGAGGAGTTTG+AGG - chr2_1:3525567-3525586 None:intergenic 55.0%
! GCCCATCTTGTTTGAGCAGC+AGG - chr2_1:3525582-3525601 None:intergenic 55.0%
!! GGTTCTGGCTCAGGAGCTAA+TGG - chr2_1:3526441-3526460 None:intergenic 55.0%
!! TCAGTAGTTGGCTCGGGTTC+TGG - chr2_1:3526456-3526475 None:intergenic 55.0%
CTGCCTCTCTCCATGGATGT+GGG - chr2_1:3526550-3526569 None:intergenic 55.0%
ACTGCCTCTCTCCATGGATG+TGG - chr2_1:3526551-3526570 None:intergenic 55.0%
GTGTGTCCTCATGAAGGCTG+TGG + chr2_1:3527083-3527102 Msa0188340:CDS 55.0%
GAACCGTATGTCGCTCCAGA+AGG - chr2_1:3529563-3529582 None:intergenic 55.0%
CAGCGAAGAAACTGAGGAGG+AGG + chr2_1:3529937-3529956 Msa0188340:CDS 55.0%
ACGCCCCTTTCTCACGTCCA+AGG + chr2_1:3524869-3524888 Msa0188340:CDS 60.0%
GGGAGCCTTGGACGTGAGAA+AGG - chr2_1:3524877-3524896 None:intergenic 60.0%
!! GTTGGCTCGGGTTCTGGCTC+AGG - chr2_1:3526450-3526469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 3524738 3530319 3524738 ID=Msa0188340;Name=Msa0188340
chr2_1 mRNA 3524738 3530319 3524738 ID=Msa0188340-mRNA-1;Parent=Msa0188340;Name=Msa0188340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|1|1|6|280|375
chr2_1 exon 3524738 3524919 3524738 ID=Msa0188340-mRNA-1:exon:1446;Parent=Msa0188340-mRNA-1
chr2_1 exon 3525026 3525084 3525026 ID=Msa0188340-mRNA-1:exon:1447;Parent=Msa0188340-mRNA-1
chr2_1 exon 3526400 3526599 3526400 ID=Msa0188340-mRNA-1:exon:1448;Parent=Msa0188340-mRNA-1
chr2_1 exon 3527020 3527109 3527020 ID=Msa0188340-mRNA-1:exon:1449;Parent=Msa0188340-mRNA-1
chr2_1 exon 3527759 3527902 3527759 ID=Msa0188340-mRNA-1:exon:1450;Parent=Msa0188340-mRNA-1
chr2_1 exon 3529491 3530319 3529491 ID=Msa0188340-mRNA-1:exon:1451;Parent=Msa0188340-mRNA-1
chr2_1 five_prime_UTR 3524738 3524833 3524738 ID=Msa0188340-mRNA-1:five_prime_utr;Parent=Msa0188340-mRNA-1
chr2_1 CDS 3524834 3524919 3524834 ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1
chr2_1 CDS 3525026 3525084 3525026 ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1
chr2_1 CDS 3526400 3526599 3526400 ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1
chr2_1 CDS 3527020 3527109 3527020 ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1
chr2_1 CDS 3527759 3527902 3527759 ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1
chr2_1 CDS 3529491 3530039 3529491 ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1
chr2_1 three_prime_UTR 3530040 3530319 3530040 ID=Msa0188340-mRNA-1:three_prime_utr;Parent=Msa0188340-mRNA-1
Gene Sequence

>Msa0188340

ATGGAGACTCACTACAACCACTCTCTCTTTGAGAGACGCCCCTTTCTCACGTCCAAGGCTCCCGCTGTTAAATGGGTCAAACAATGGGTTCCACAAGACGTTGTTGCCACTGGTGGGAAGTGTATGCTGTTAAGATGGGTAACAGAGGATACCATAAATGCCTTGAAAGAAAAGGAAAAAGAACCATTAGCTCCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAGTTTGTTTGCCATTATGAGGGGTGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACGGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCAGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCCCATCATGAAAAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAAACTGCTAGACCTTCTGGAGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTAAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCTGCCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA

Protein sequence

>Msa0188340

METHYNHSLFERRPFLTSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTINALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED*