Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0188340 | XP_024633268.1 | 99.200 | 375 | 3 | 0 | 1 | 375 | 1 | 375 | 0.0 | 781 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0188340 | sp|Q2V3L3|YY1_ARATH | 68.407 | 364 | 99 | 7 | 10 | 361 | 12 | 371 | 6.43e-160 | 457 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0188340 | A0A396J0E0 | 99.200 | 375 | 3 | 0 | 1 | 375 | 1 | 375 | 0.0 | 781 |
Gene ID | Type | Classification |
---|---|---|
Msa0188340 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0188340 | Msa0270600 | 0.950634 | 1.096934e-108 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0188340 | MtrunA17_Chr2g0277381 | 99.200 | 375 | 3 | 0 | 1 | 375 | 1 | 375 | 0.0 | 781 |
Msa0188340 | MtrunA17_Chr1g0164511 | 28.497 | 193 | 118 | 5 | 77 | 256 | 13 | 198 | 1.51e-12 | 67.4 |
Msa0188340 | MtrunA17_Chr3g0082161 | 28.497 | 193 | 118 | 5 | 77 | 256 | 13 | 198 | 1.96e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0188340 | AT4G06634.1 | 68.407 | 364 | 99 | 7 | 10 | 361 | 12 | 371 | 6.54e-161 | 457 |
Msa0188340 | AT4G06634.3 | 65.489 | 368 | 96 | 9 | 10 | 361 | 12 | 364 | 1.73e-148 | 425 |
Msa0188340 | AT4G06634.2 | 65.964 | 332 | 97 | 7 | 42 | 361 | 6 | 333 | 7.00e-135 | 389 |
Msa0188340 | AT3G48430.1 | 27.273 | 121 | 80 | 2 | 77 | 195 | 1243 | 1357 | 2.96e-11 | 65.9 |
Msa0188340 | AT3G48430.2 | 27.273 | 121 | 80 | 2 | 77 | 195 | 884 | 998 | 3.79e-11 | 65.5 |
Find 106 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAAGGCTCCCGCTGTTAAA+TGG | 0.155162 | 2_1:+3524886 | Msa0188340:CDS |
GTTTCTGTTGCAGAAATTTC+TGG | 0.165103 | 2_1:+3527007 | Msa0188340:intron |
TCAGTAGTTGGCTCGGGTTC+TGG | 0.253968 | 2_1:-3526453 | None:intergenic |
TTAGGGTTTGAAGAGAAATT+AGG | 0.268581 | 2_1:-3524767 | None:intergenic |
TACTTTATCGGCACATCTAT+TGG | 0.312836 | 2_1:-3529497 | None:intergenic |
GCGTATCTCTTCCCACAATC+TGG | 0.321481 | 2_1:-3527834 | None:intergenic |
TTACGCTGAGCAACTTTAGA+AGG | 0.345270 | 2_1:-3529836 | None:intergenic |
CCTTTCCACACCCCTCATAA+TGG | 0.376204 | 2_1:-3526578 | None:intergenic |
GCAGTTTGTTTGCCATTATG+AGG | 0.386353 | 2_1:+3526566 | Msa0188340:CDS |
CTAAAGTTGCTCAGCGTAAA+GGG | 0.392561 | 2_1:+3529840 | Msa0188340:CDS |
ATGCTGTTAAGATGGGTAAC+AGG | 0.398286 | 2_1:+3525063 | Msa0188340:CDS |
GGAGGAGTTGCATACTTTAT+CGG | 0.401475 | 2_1:-3529509 | None:intergenic |
TGACATAGTACATTGGTTAT+CGG | 0.402772 | 2_1:+3530141 | Msa0188340:three_prime_UTR |
CCTTCATAAGGACATGCATA+TGG | 0.405323 | 2_1:-3529599 | None:intergenic |
CTCTTCCCACAATCTGGGTA+TGG | 0.407430 | 2_1:-3527828 | None:intergenic |
GGTTCTGGCTCAGGAGCTAA+TGG | 0.412849 | 2_1:-3526438 | None:intergenic |
GTTGGCTCGGGTTCTGGCTC+AGG | 0.414498 | 2_1:-3526447 | None:intergenic |
GGGAGCCTTGGACGTGAGAA+AGG | 0.426315 | 2_1:-3524874 | None:intergenic |
GTTTCTTCTTTCACTGGCCA+AGG | 0.432210 | 2_1:-3529902 | None:intergenic |
CCATTTAACAGCGGGAGCCT+TGG | 0.434294 | 2_1:-3524886 | None:intergenic |
CAAGGCTCCCGCTGTTAAAT+GGG | 0.434337 | 2_1:+3524887 | Msa0188340:CDS |
AAGACATTTCTTAATTCATA+CGG | 0.439731 | 2_1:+3527046 | Msa0188340:CDS |
GCAAGTGATCACGATGCTTA+TGG | 0.440454 | 2_1:+3529749 | Msa0188340:CDS |
AGACATTTCTTAATTCATAC+GGG | 0.448713 | 2_1:+3527047 | Msa0188340:CDS |
TTATAGATGCTGGTGCTTTG+AGG | 0.456478 | 2_1:+3526517 | Msa0188340:CDS |
TCTAAAGTTGCTCAGCGTAA+AGG | 0.457185 | 2_1:+3529839 | Msa0188340:CDS |
TCGTAAGTTTCTTCTTTCAC+TGG | 0.459248 | 2_1:-3529908 | None:intergenic |
CAATATGCAGGCCTTCTCCT+TGG | 0.459806 | 2_1:+3527749 | Msa0188340:intron |
CAGTTTGTTTGCCATTATGA+GGG | 0.471982 | 2_1:+3526567 | Msa0188340:CDS |
CATAAATGCCTTGAAAGAAA+AGG | 0.473578 | 2_1:+3526407 | Msa0188340:CDS |
CATTGCTTCCCATCATGAAA+AGG | 0.475165 | 2_1:+3527881 | Msa0188340:CDS |
TAATAATGCTGAAAATGAAA+TGG | 0.485384 | 2_1:+3529721 | Msa0188340:CDS |
CCACAAGACGTTGTTGCCAC+TGG | 0.487699 | 2_1:+3525030 | Msa0188340:CDS |
AGCTTAAACTGCATTTAAAG+AGG | 0.494339 | 2_1:+3529651 | Msa0188340:CDS |
ATATTAAAAGTGGCAGGGGT+TGG | 0.494716 | 2_1:-3529869 | None:intergenic |
TTAGCCATATTAAAAGTGGC+AGG | 0.498748 | 2_1:-3529875 | None:intergenic |
CCATATGCATGTCCTTATGA+AGG | 0.500362 | 2_1:+3529599 | Msa0188340:CDS |
CTTTGTAGCTATGAAGGCTG+TGG | 0.501431 | 2_1:+3526486 | Msa0188340:CDS |
TCCTTATGAAGGGTGTGAAA+AGG | 0.501607 | 2_1:+3529610 | Msa0188340:CDS |
TGAAAATGCTATGCATGCTC+TGG | 0.502807 | 2_1:+3529697 | Msa0188340:CDS |
AACAAATTCTGAGAAATCAA+TGG | 0.509712 | 2_1:+3524815 | Msa0188340:exon |
GGAAGTGTATGCTGTTAAGA+TGG | 0.510117 | 2_1:+3525055 | Msa0188340:CDS |
AAGTACTTCAGTAGTTGGCT+CGG | 0.511218 | 2_1:-3526460 | None:intergenic |
GAAGATGGTTGGAGATATGC+TGG | 0.512941 | 2_1:+3529974 | Msa0188340:CDS |
AGGAAGCATTCCCACATCCA+TGG | 0.515275 | 2_1:+3526537 | Msa0188340:CDS |
ACTGCCTCTCTCCATGGATG+TGG | 0.516577 | 2_1:-3526548 | None:intergenic |
GGAGCCTTGGACGTGAGAAA+GGG | 0.516870 | 2_1:-3524873 | None:intergenic |
CGTATCTCTTCCCACAATCT+GGG | 0.520117 | 2_1:-3527833 | None:intergenic |
CTTCATAAGGACATGCATAT+GGG | 0.522116 | 2_1:-3529598 | None:intergenic |
GTAAAAGTCAGAAGCAAAGC+AGG | 0.525445 | 2_1:+3529789 | Msa0188340:CDS |
AGTACTTCAGTAGTTGGCTC+GGG | 0.526508 | 2_1:-3526459 | None:intergenic |
TTCTGGAGCGACATACGGTT+CGG | 0.536084 | 2_1:+3529562 | Msa0188340:CDS |
CAGCGAAGAAACTGAGGAGG+AGG | 0.538145 | 2_1:+3529937 | Msa0188340:CDS |
AGACCTTCTGGAGCGACATA+CGG | 0.541337 | 2_1:+3529557 | Msa0188340:CDS |
GTGTCTTCATGTGAGACCTC+AGG | 0.542819 | 2_1:-3527779 | None:intergenic |
ATTAATATAAATTCATCCTA+CGG | 0.545288 | 2_1:-3530178 | None:intergenic |
TCTTCCCACAATCTGGGTAT+GGG | 0.550401 | 2_1:-3527827 | None:intergenic |
CGCTGAGCAACTTTAGAAGG+AGG | 0.554525 | 2_1:-3529833 | None:intergenic |
TATGCCCATACCCAGATTGT+GGG | 0.558178 | 2_1:+3527823 | Msa0188340:CDS |
CTGTTAAATGGGTCAAACAA+TGG | 0.559100 | 2_1:+3524898 | Msa0188340:CDS |
GTTTGCCATTATGAGGGGTG+TGG | 0.559433 | 2_1:+3526573 | Msa0188340:CDS |
CAAGACGTTGTTGCCACTGG+TGG | 0.559549 | 2_1:+3525033 | Msa0188340:CDS |
CCATTATGAGGGGTGTGGAA+AGG | 0.561192 | 2_1:+3526578 | Msa0188340:CDS |
GTGACAATGTTGAAGATGGT+TGG | 0.563304 | 2_1:+3529963 | Msa0188340:CDS |
GCTTAAACTGCATTTAAAGA+GGG | 0.566396 | 2_1:+3529652 | Msa0188340:CDS |
AGCCATATTAAAAGTGGCAG+GGG | 0.567185 | 2_1:-3529873 | None:intergenic |
GTGTGTCCTCATGAAGGCTG+TGG | 0.567957 | 2_1:+3527083 | Msa0188340:CDS |
CATTTAAAGAGGGAGCATCC+TGG | 0.569801 | 2_1:+3529662 | Msa0188340:CDS |
GGAAAGACATTTATAGATGC+TGG | 0.570125 | 2_1:+3526507 | Msa0188340:CDS |
TCCTCATGAAGGCTGTGGTA+AGG | 0.574286 | 2_1:+3527088 | Msa0188340:CDS |
TTCCTATCGAGGATGAAGCT+TGG | 0.574345 | 2_1:-3524738 | None:intergenic |
TGTTTGACCCATTTAACAGC+GGG | 0.574962 | 2_1:-3524894 | None:intergenic |
AAACAAACTGCCTCTCTCCA+TGG | 0.576594 | 2_1:-3526554 | None:intergenic |
ACGCCCCTTTCTCACGTCCA+AGG | 0.578019 | 2_1:+3524869 | Msa0188340:CDS |
GAAGTGTATGCTGTTAAGAT+GGG | 0.578315 | 2_1:+3525056 | Msa0188340:CDS |
ATATGCCCATACCCAGATTG+TGG | 0.578913 | 2_1:+3527822 | Msa0188340:CDS |
AGACCTCAGGTTAAAATCCA+AGG | 0.579184 | 2_1:-3527766 | None:intergenic |
CTAAAATTCTTCAATCTCTG+TGG | 0.582478 | 2_1:+3524792 | Msa0188340:five_prime_UTR |
CTGCCTCTCTCCATGGATGT+GGG | 0.586666 | 2_1:-3526547 | None:intergenic |
TAGCCATATTAAAAGTGGCA+GGG | 0.588156 | 2_1:-3529874 | None:intergenic |
AGTTTGTTTGCCATTATGAG+GGG | 0.589676 | 2_1:+3526568 | Msa0188340:CDS |
CAGGTTAAAATCCAAGGAGA+AGG | 0.604105 | 2_1:-3527760 | None:intergenic |
GAACCGTATGTCGCTCCAGA+AGG | 0.605176 | 2_1:-3529560 | None:intergenic |
CATATGCATGTCCTTATGAA+GGG | 0.608937 | 2_1:+3529600 | Msa0188340:CDS |
ATAACCAATGTACTATGTCA+AGG | 0.609060 | 2_1:-3530138 | None:intergenic |
AAACAACGAAGATGATGATG+AGG | 0.613095 | 2_1:+3529997 | Msa0188340:CDS |
GAGCCTTGGACGTGAGAAAG+GGG | 0.615789 | 2_1:-3524872 | None:intergenic |
GATCGTGACAATGTTGAAGA+TGG | 0.616587 | 2_1:+3529959 | Msa0188340:CDS |
TATGGTGGAAAACGTTCCAA+TGG | 0.620791 | 2_1:+3529767 | Msa0188340:CDS |
ACATGCATATGGGCGATCAG+AGG | 0.622960 | 2_1:-3529588 | None:intergenic |
AGTGATCACGATGCTTATGG+TGG | 0.628298 | 2_1:+3529752 | Msa0188340:CDS |
GGCGTCTCTCAAAGAGAGAG+TGG | 0.633941 | 2_1:-3524851 | None:intergenic |
ACCTTACCACAGCCTTCATG+AGG | 0.637114 | 2_1:-3527089 | None:intergenic |
AAGACGTTGTTGCCACTGGT+GGG | 0.637791 | 2_1:+3525034 | Msa0188340:CDS |
CACCAAGCTTCATCCTCGAT+AGG | 0.642148 | 2_1:+3524736 | None:intergenic |
AATCGCGGTAGTTTCTGACG+AGG | 0.650726 | 2_1:+3530246 | Msa0188340:three_prime_UTR |
GACATTTCTTAATTCATACG+GGG | 0.654030 | 2_1:+3527048 | Msa0188340:CDS |
CAGCATACACTTCCCACCAG+TGG | 0.655133 | 2_1:-3525046 | None:intergenic |
CCAGTGGCAACAACGTCTTG+TGG | 0.655732 | 2_1:-3525030 | None:intergenic |
ATTCCCACATCCATGGAGAG+AGG | 0.655979 | 2_1:+3526544 | Msa0188340:CDS |
TTAGGAATTAGTTCCTATCG+AGG | 0.656153 | 2_1:-3524749 | None:intergenic |
TGAAGACAGCGAAGAAACTG+AGG | 0.661243 | 2_1:+3529931 | Msa0188340:CDS |
AGACAGCGAAGAAACTGAGG+AGG | 0.668007 | 2_1:+3529934 | Msa0188340:CDS |
GGAAGAATGAATGATACCGT+AGG | 0.673395 | 2_1:+3530162 | Msa0188340:three_prime_UTR |
ACATTTCTTAATTCATACGG+GGG | 0.674154 | 2_1:+3527049 | Msa0188340:CDS |
TTGTTTGACCCATTTAACAG+CGG | 0.696885 | 2_1:-3524895 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTATATTCTATTCTAAA+TGG | + | chr2_1:3527938-3527957 | Msa0188340:intron | 10.0% |
!! | CATATAAAGATAAAAAAAAT+TGG | - | chr2_1:3528218-3528237 | None:intergenic | 10.0% |
!!! | AATATATAAATTTTCAAGTT+CGG | + | chr2_1:3528936-3528955 | Msa0188340:intron | 10.0% |
!! | TGTTATCTAATATTAAGTTA+AGG | - | chr2_1:3525410-3525429 | None:intergenic | 15.0% |
!! | CATTAAAAAAAAATGCAAAT+GGG | - | chr2_1:3525489-3525508 | None:intergenic | 15.0% |
!! | AATTTACCAAAAAAAAGTAA+AGG | + | chr2_1:3525808-3525827 | Msa0188340:intron | 15.0% |
!! | AATGTACAATAAATATTGTT+TGG | + | chr2_1:3527416-3527435 | Msa0188340:intron | 15.0% |
!! | TTGATTATTATAAATTTCAG+GGG | - | chr2_1:3528154-3528173 | None:intergenic | 15.0% |
!! | CTTGATTATTATAAATTTCA+GGG | - | chr2_1:3528155-3528174 | None:intergenic | 15.0% |
!! | TTTATAATAATCAAGCAAAT+TGG | + | chr2_1:3528160-3528179 | Msa0188340:intron | 15.0% |
!! | AAGAAAATCTTTAAACTATA+TGG | + | chr2_1:3528291-3528310 | Msa0188340:intron | 15.0% |
!!! | ATATATAAATTTTCAAGTTC+GGG | + | chr2_1:3528937-3528956 | Msa0188340:intron | 15.0% |
!!! | AATTGAAGTTTTATTAATGT+CGG | + | chr2_1:3529077-3529096 | Msa0188340:intron | 15.0% |
!!! | TATTTTAATACTATTTTGCA+AGG | + | chr2_1:3529268-3529287 | Msa0188340:intron | 15.0% |
!! | AAGAAAAAATCTAATATTGT+AGG | - | chr2_1:3530085-3530104 | None:intergenic | 15.0% |
!! | ATTAATATAAATTCATCCTA+CGG | - | chr2_1:3530181-3530200 | None:intergenic | 15.0% |
!! | AAACTTTAACAGAAAAATTG+AGG | - | chr2_1:3524964-3524983 | None:intergenic | 20.0% |
!!! | TTTTTCTGTTAAAGTTTGTT+TGG | + | chr2_1:3524967-3524986 | Msa0188340:intron | 20.0% |
!! | AACATTACAAATAACCTAAA+GGG | - | chr2_1:3525169-3525188 | None:intergenic | 20.0% |
!!! | TTTGTAATGTTGATTTATCA+TGG | + | chr2_1:3525178-3525197 | Msa0188340:intron | 20.0% |
!! | CCATTAAAAAAAAATGCAAA+TGG | - | chr2_1:3525490-3525509 | None:intergenic | 20.0% |
!!! | CCATTTGCATTTTTTTTTAA+TGG | + | chr2_1:3525487-3525506 | Msa0188340:intron | 20.0% |
!!! | ATTATGAACAGATTTTTTTG+GGG | - | chr2_1:3526026-3526045 | None:intergenic | 20.0% |
!!! | CATTATGAACAGATTTTTTT+GGG | - | chr2_1:3526027-3526046 | None:intergenic | 20.0% |
!! | CATACAATATAATAATTGCT+TGG | - | chr2_1:3526323-3526342 | None:intergenic | 20.0% |
!! | AATTACAAAAAATGGAAACT+AGG | - | chr2_1:3526778-3526797 | None:intergenic | 20.0% |
!!! | TTTCCATTTTTTGTAATTTC+AGG | + | chr2_1:3526780-3526799 | Msa0188340:intron | 20.0% |
!! | ACTAGATGGAAAAATTAATA+AGG | - | chr2_1:3526892-3526911 | None:intergenic | 20.0% |
!!! | AACTTTTTTATGAAACTAGA+TGG | - | chr2_1:3526906-3526925 | None:intergenic | 20.0% |
!! | AAGACATTTCTTAATTCATA+CGG | + | chr2_1:3527046-3527065 | Msa0188340:CDS | 20.0% |
!! | ATATTTGATCATTACAATGA+AGG | - | chr2_1:3527278-3527297 | None:intergenic | 20.0% |
!! | TAGAAGATGATTAATAGATT+TGG | + | chr2_1:3527373-3527392 | Msa0188340:intron | 20.0% |
!! | AGAAGATGATTAATAGATTT+GGG | + | chr2_1:3527374-3527393 | Msa0188340:intron | 20.0% |
!!! | AATTTTAGTATCATATTGTC+TGG | + | chr2_1:3527681-3527700 | Msa0188340:intron | 20.0% |
!!! | TTGAAATTTTGTTAATGTCA+GGG | - | chr2_1:3528013-3528032 | None:intergenic | 20.0% |
!!! | ATTGAAATTTTGTTAATGTC+AGG | - | chr2_1:3528014-3528033 | None:intergenic | 20.0% |
!! | TGATTATTATAAATTTCAGG+GGG | - | chr2_1:3528153-3528172 | None:intergenic | 20.0% |
!! | GCTTGATTATTATAAATTTC+AGG | - | chr2_1:3528156-3528175 | None:intergenic | 20.0% |
!!! | GAATATTTTTTTTTGTCACA+AGG | - | chr2_1:3528187-3528206 | None:intergenic | 20.0% |
!!! | AGAAAGAATAATTTTTATGC+TGG | + | chr2_1:3528339-3528358 | Msa0188340:intron | 20.0% |
!! | TGTTATACCTTTCAAATATT+TGG | + | chr2_1:3528419-3528438 | Msa0188340:intron | 20.0% |
!! | GTTATACCTTTCAAATATTT+GGG | + | chr2_1:3528420-3528439 | Msa0188340:intron | 20.0% |
!!! | TAAGATTTTGGACTAATAAT+TGG | + | chr2_1:3528796-3528815 | Msa0188340:intron | 20.0% |
!!! | TATATAAATTTTCAAGTTCG+GGG | + | chr2_1:3528938-3528957 | Msa0188340:intron | 20.0% |
!!! | ATTGAAGTTTTATTAATGTC+GGG | + | chr2_1:3529078-3529097 | Msa0188340:intron | 20.0% |
!!! | TTTTTTAGCCATATTAAAAG+TGG | - | chr2_1:3529882-3529901 | None:intergenic | 20.0% |
!! | AAAAAATCTAATATTGTAGG+AGG | - | chr2_1:3530082-3530101 | None:intergenic | 20.0% |
!!! | ATTGAAGAATTTTAGGGTTA+GGG | - | chr2_1:3524787-3524806 | None:intergenic | 25.0% |
!! | ACAGAGATTGAAGAATTTTA+GGG | - | chr2_1:3524793-3524812 | None:intergenic | 25.0% |
!! | AACAAATTCTGAGAAATCAA+TGG | + | chr2_1:3524815-3524834 | Msa0188340:exon | 25.0% |
!!! | AATTGAGTTGATGAAGAAAA+GGG | - | chr2_1:3524930-3524949 | None:intergenic | 25.0% |
!!! | AAATTGAGTTGATGAAGAAA+AGG | - | chr2_1:3524931-3524950 | None:intergenic | 25.0% |
! | ATCATAGCAATGTTATTATC+AGG | + | chr2_1:3525004-3525023 | Msa0188340:intron | 25.0% |
! | TCATAGCAATGTTATTATCA+GGG | + | chr2_1:3525005-3525024 | Msa0188340:intron | 25.0% |
! | ATTATGGGTGCTTAATTTAT+TGG | - | chr2_1:3525143-3525162 | None:intergenic | 25.0% |
! | TAACCTAAAGGGAAAATTAT+GGG | - | chr2_1:3525158-3525177 | None:intergenic | 25.0% |
! | ATAACCTAAAGGGAAAATTA+TGG | - | chr2_1:3525159-3525178 | None:intergenic | 25.0% |
! | CAACATTACAAATAACCTAA+AGG | - | chr2_1:3525170-3525189 | None:intergenic | 25.0% |
! | TAATGTCTAATCAGAAAGAT+AGG | - | chr2_1:3525230-3525249 | None:intergenic | 25.0% |
! | CAATTCATACTTGTAAAGTT+AGG | - | chr2_1:3525328-3525347 | None:intergenic | 25.0% |
! | CTAACTTTACAAGTATGAAT+TGG | + | chr2_1:3525326-3525345 | Msa0188340:intron | 25.0% |
! | GATGTTTCATAAAAACTCTA+CGG | + | chr2_1:3525366-3525385 | Msa0188340:intron | 25.0% |
! | GAAAATGTTACTAGTTAGAT+TGG | + | chr2_1:3525509-3525528 | Msa0188340:intron | 25.0% |
! | CTTGAAAATTCATATGCAAA+CGG | - | chr2_1:3525772-3525791 | None:intergenic | 25.0% |
!!! | ATTTTCAAGCTTCAAATCTA+TGG | + | chr2_1:3525632-3525651 | Msa0188340:intron | 25.0% |
!!! | ATTTTCAAGCTTCAAATCTA+TGG | - | chr2_1:3525632-3525651 | None:intergenic | 25.0% |
! | CTTGAAAATTCATATGCAAA+AGG | + | chr2_1:3525772-3525791 | Msa0188340:intron | 25.0% |
!!! | TTTGCTCCTTTACTTTTTTT+TGG | - | chr2_1:3525817-3525836 | None:intergenic | 25.0% |
!! | TATCTGAAATTAAGAGATCA+CGG | + | chr2_1:3525841-3525860 | Msa0188340:intron | 25.0% |
! | TATGAATGAATTAATACTGC+TGG | + | chr2_1:3525889-3525908 | Msa0188340:intron | 25.0% |
!! | TATTTGAGATAGTTATGTCA+GGG | - | chr2_1:3525994-3526013 | None:intergenic | 25.0% |
!!! | TTATGAACAGATTTTTTTGG+GGG | - | chr2_1:3526025-3526044 | None:intergenic | 25.0% |
!!! | GCATTATGAACAGATTTTTT+TGG | - | chr2_1:3526028-3526047 | None:intergenic | 25.0% |
! | AGATTGTTATGAAAGATAAC+TGG | - | chr2_1:3526188-3526207 | None:intergenic | 25.0% |
!!! | ATGGTTTTATTGATGCAAAA+AGG | + | chr2_1:3526228-3526247 | Msa0188340:intron | 25.0% |
!! | TTCTTTTTCCTTTTCTTTCA+AGG | - | chr2_1:3526418-3526437 | None:intergenic | 25.0% |
! | CTTTAATGTTGTAACATACT+TGG | + | chr2_1:3526657-3526676 | Msa0188340:intron | 25.0% |
! | AGCTTCACAAAAATTGTTAA+AGG | - | chr2_1:3526695-3526714 | None:intergenic | 25.0% |
! | ACACCTGAAATTACAAAAAA+TGG | - | chr2_1:3526786-3526805 | None:intergenic | 25.0% |
! | AGACATTTCTTAATTCATAC+GGG | + | chr2_1:3527047-3527066 | Msa0188340:CDS | 25.0% |
! | CTTAAGAGATCAATAAACAA+GGG | - | chr2_1:3527132-3527151 | None:intergenic | 25.0% |
!! | TTTTGAATCACCTTTATGTT+TGG | + | chr2_1:3527169-3527188 | Msa0188340:intron | 25.0% |
! | GAAAAAACAGATCAGTAATT+AGG | - | chr2_1:3527256-3527275 | None:intergenic | 25.0% |
! | AAACAATAATACCACAAAGA+AGG | - | chr2_1:3527617-3527636 | None:intergenic | 25.0% |
! | CTTTGTGGTATTATTGTTTA+AGG | + | chr2_1:3527618-3527637 | Msa0188340:intron | 25.0% |
!! | AATTATCTTTTCCAAATGCA+AGG | - | chr2_1:3527665-3527684 | None:intergenic | 25.0% |
! | CTATTCTAAATGGAGTAAAT+AGG | + | chr2_1:3527948-3527967 | Msa0188340:intron | 25.0% |
! | ATTGACGAAACTTACAATTT+CGG | - | chr2_1:3529107-3529126 | None:intergenic | 25.0% |
!! | TGAAATTTTGTTAATGTCAG+GGG | - | chr2_1:3528012-3528031 | None:intergenic | 25.0% |
! | TAGGTTTATCTTTCAAAATG+TGG | - | chr2_1:3528449-3528468 | None:intergenic | 25.0% |
! | TCATTAAAGTAACTGATCTT+AGG | - | chr2_1:3528468-3528487 | None:intergenic | 25.0% |
!! | GGAATTTTTCTGTCTATAAT+GGG | + | chr2_1:3528528-3528547 | Msa0188340:intron | 25.0% |
!! | TTTCTTTTTGCAATTACCTA+TGG | + | chr2_1:3528595-3528614 | Msa0188340:intron | 25.0% |
! | TTTCCAAAATTCATATGAAG+TGG | + | chr2_1:3528651-3528670 | Msa0188340:intron | 25.0% |
!! | TATCCACTTCATATGAATTT+TGG | - | chr2_1:3528657-3528676 | None:intergenic | 25.0% |
!! | TTGGTGCAAATATAAGATTT+TGG | + | chr2_1:3528784-3528803 | Msa0188340:intron | 25.0% |
!! | TTGGTGCAAATATAAGATTT+TGG | + | chr2_1:3528784-3528803 | Msa0188340:intron | 25.0% |
!! | ACTTGTTGATCATAATCATT+GGG | + | chr2_1:3528901-3528920 | Msa0188340:intron | 25.0% |
!!! | ATATAAATTTTCAAGTTCGG+GGG | + | chr2_1:3528939-3528958 | Msa0188340:intron | 25.0% |
! | TGACTAACAGAAAAATTTGA+CGG | + | chr2_1:3529014-3529033 | Msa0188340:intron | 25.0% |
! | ATTAACGTTGTACAATTTCA+GGG | + | chr2_1:3529050-3529069 | Msa0188340:intron | 25.0% |
!!! | TTGAAGTTTTATTAATGTCG+GGG | + | chr2_1:3529079-3529098 | Msa0188340:intron | 25.0% |
!! | CACATTTAGAATGAGTAAAT+AGG | - | chr2_1:3529144-3529163 | None:intergenic | 25.0% |
!!! | ATGATTTTAATATGTGCACT+TGG | + | chr2_1:3529204-3529223 | Msa0188340:intron | 25.0% |
!!! | AATTTTTGATTGAGCACTTT+TGG | + | chr2_1:3529395-3529414 | Msa0188340:intron | 25.0% |
! | TGTCAATCAAAAATTGTTTG+AGG | - | chr2_1:3529453-3529472 | None:intergenic | 25.0% |
!! | TAGCATTTTCATCATTTATG+TGG | - | chr2_1:3529688-3529707 | None:intergenic | 25.0% |
! | TTAATATGGCTAAAAAACCT+TGG | + | chr2_1:3529885-3529904 | Msa0188340:CDS | 25.0% |
TTAGGGTTTGAAGAGAAATT+AGG | - | chr2_1:3524770-3524789 | None:intergenic | 30.0% | |
!!! | GATTGAAGAATTTTAGGGTT+AGG | - | chr2_1:3524788-3524807 | None:intergenic | 30.0% |
! | CACAGAGATTGAAGAATTTT+AGG | - | chr2_1:3524794-3524813 | None:intergenic | 30.0% |
CTAAAATTCTTCAATCTCTG+TGG | + | chr2_1:3524792-3524811 | Msa0188340:five_prime_UTR | 30.0% | |
!! | ATTGAGTTGATGAAGAAAAG+GGG | - | chr2_1:3524929-3524948 | None:intergenic | 30.0% |
AGCTCAATTGACAGTAAAAA+AGG | - | chr2_1:3525094-3525113 | None:intergenic | 30.0% | |
TCATGTTCTTAATCAAACGA+TGG | + | chr2_1:3525292-3525311 | Msa0188340:intron | 30.0% | |
TAAGATTCATGTGCAAACAT+GGG | + | chr2_1:3525689-3525708 | Msa0188340:intron | 30.0% | |
TCATATGCAAAAGGATCAAA+AGG | + | chr2_1:3525781-3525800 | Msa0188340:intron | 30.0% | |
CATATGCAAAAGGATCAAAA+GGG | + | chr2_1:3525782-3525801 | Msa0188340:intron | 30.0% | |
! | ATCTGAAATTAAGAGATCAC+GGG | + | chr2_1:3525842-3525861 | Msa0188340:intron | 30.0% |
! | GTATTTGAGATAGTTATGTC+AGG | - | chr2_1:3525995-3526014 | None:intergenic | 30.0% |
AAGATAACTGGAAAGCAAAT+TGG | - | chr2_1:3526176-3526195 | None:intergenic | 30.0% | |
! | CAAACTCATGTATTTCTGAA+TGG | + | chr2_1:3526209-3526228 | Msa0188340:intron | 30.0% |
!!! | CTGTGTTTTGTTTTCTTTAG+AGG | + | chr2_1:3526380-3526399 | Msa0188340:intron | 30.0% |
!! | CTTTTCTTTCAAGGCATTTA+TGG | - | chr2_1:3526409-3526428 | None:intergenic | 30.0% |
CATAAATGCCTTGAAAGAAA+AGG | + | chr2_1:3526407-3526426 | Msa0188340:CDS | 30.0% | |
!! | AGAAAAAGTACTTCAGTAGT+TGG | - | chr2_1:3526468-3526487 | None:intergenic | 30.0% |
! | CTTTTTCTTTGTAGCTATGA+AGG | + | chr2_1:3526480-3526499 | Msa0188340:CDS | 30.0% |
! | AGGTAATGAAACTGTTTCTT+CGG | + | chr2_1:3526598-3526617 | Msa0188340:intron | 30.0% |
CAAAAAATGGAAACTAGGAT+GGG | - | chr2_1:3526773-3526792 | None:intergenic | 30.0% | |
ACAAAAAATGGAAACTAGGA+TGG | - | chr2_1:3526774-3526793 | None:intergenic | 30.0% | |
! | ATTTCAGGTGTTGTAATTTC+AGG | + | chr2_1:3526795-3526814 | Msa0188340:intron | 30.0% |
GATCTATCTTGAGCAATTAT+TGG | - | chr2_1:3526870-3526889 | None:intergenic | 30.0% | |
TTCTAAATAGACCTGACATT+TGG | - | chr2_1:3526970-3526989 | None:intergenic | 30.0% | |
GACATTTCTTAATTCATACG+GGG | + | chr2_1:3527048-3527067 | Msa0188340:CDS | 30.0% | |
ACATTTCTTAATTCATACGG+GGG | + | chr2_1:3527049-3527068 | Msa0188340:CDS | 30.0% | |
CCTTAAGAGATCAATAAACA+AGG | - | chr2_1:3527133-3527152 | None:intergenic | 30.0% | |
! | CCTTGTTTATTGATCTCTTA+AGG | + | chr2_1:3527130-3527149 | Msa0188340:intron | 30.0% |
ATGGAATATGCCAAACATAA+AGG | - | chr2_1:3527182-3527201 | None:intergenic | 30.0% | |
! | AGAGTTTTTGCTGATATTCA+GGG | - | chr2_1:3527209-3527228 | None:intergenic | 30.0% |
! | AAGAGTTTTTGCTGATATTC+AGG | - | chr2_1:3527210-3527229 | None:intergenic | 30.0% |
TTCATATCGGATTCAATCAT+GGG | - | chr2_1:3527546-3527565 | None:intergenic | 30.0% | |
AATGATTCAAACCTTCTTTG+TGG | + | chr2_1:3527603-3527622 | Msa0188340:intron | 30.0% | |
! | TTAACCAACCTTTTCATGAT+GGG | - | chr2_1:3527892-3527911 | None:intergenic | 30.0% |
! | ATTAACCAACCTTTTCATGA+TGG | - | chr2_1:3527893-3527912 | None:intergenic | 30.0% |
TTGACGAAACTTACAATTTC+GGG | - | chr2_1:3529108-3529127 | None:intergenic | 30.0% | |
! | AAATTTTGTTAATGTCAGGG+GGG | - | chr2_1:3528010-3528029 | None:intergenic | 30.0% |
! | GAAATTTTGTTAATGTCAGG+GGG | - | chr2_1:3528011-3528030 | None:intergenic | 30.0% |
ATTAACGTTGTGCAATTTCA+GGG | - | chr2_1:3528042-3528061 | None:intergenic | 30.0% | |
TAACGGAAAAATTTGACAGA+GGG | - | chr2_1:3528074-3528093 | None:intergenic | 30.0% | |
! | GATATCTGAATTTTTCGCAA+AGG | + | chr2_1:3528243-3528262 | Msa0188340:intron | 30.0% |
! | TTTTTCGCAAAGGATCAAAT+AGG | + | chr2_1:3528253-3528272 | Msa0188340:intron | 30.0% |
!! | TCATGTAATTAGCTTTAACC+TGG | + | chr2_1:3528395-3528414 | Msa0188340:intron | 30.0% |
!! | TTAAAGTTAAGCTTGCTACT+TGG | + | chr2_1:3528502-3528521 | Msa0188340:intron | 30.0% |
! | GGGAATTTTTCTGTCTATAA+TGG | + | chr2_1:3528527-3528546 | Msa0188340:intron | 30.0% |
!! | CTCATCAAGTTTGTTATTCA+TGG | + | chr2_1:3528561-3528580 | Msa0188340:intron | 30.0% |
!!! | CTGCTATTTTACTTCTTTGT+TGG | + | chr2_1:3528696-3528715 | Msa0188340:intron | 30.0% |
! | ACTCTAAAGATCATTGCTAT+TGG | + | chr2_1:3528765-3528784 | Msa0188340:intron | 30.0% |
! | TTTTGGACTAATAATTGGCT+TGG | + | chr2_1:3528801-3528820 | Msa0188340:intron | 30.0% |
! | TTTGGACTAATAATTGGCTT+GGG | + | chr2_1:3528802-3528821 | Msa0188340:intron | 30.0% |
! | CACTTGTTGATCATAATCAT+TGG | + | chr2_1:3528900-3528919 | Msa0188340:intron | 30.0% |
CTTGTTGATCATAATCATTG+GGG | + | chr2_1:3528902-3528921 | Msa0188340:intron | 30.0% | |
!!! | TATAAATTTTCAAGTTCGGG+GGG | + | chr2_1:3528940-3528959 | Msa0188340:intron | 30.0% |
TAACAGAAAAATTTGACGGA+GGG | + | chr2_1:3529018-3529037 | Msa0188340:intron | 30.0% | |
GATTAACGTTGTACAATTTC+AGG | + | chr2_1:3529049-3529068 | Msa0188340:intron | 30.0% | |
TTAACGTTGTACAATTTCAG+GGG | + | chr2_1:3529051-3529070 | Msa0188340:intron | 30.0% | |
!!! | TGAAGTTTTATTAATGTCGG+GGG | + | chr2_1:3529080-3529099 | Msa0188340:intron | 30.0% |
TGACGAAACTTACAATTTCA+AGG | + | chr2_1:3529109-3529128 | Msa0188340:intron | 30.0% | |
GACGAAACTTACAATTTCAA+GGG | + | chr2_1:3529110-3529129 | Msa0188340:intron | 30.0% | |
ACGAAACTTACAATTTCAAG+GGG | + | chr2_1:3529111-3529130 | Msa0188340:intron | 30.0% | |
AAAATCATACTTCATGAGAC+AGG | - | chr2_1:3529192-3529211 | None:intergenic | 30.0% | |
GCTCAATCAAAAATTGTTTG+AGG | - | chr2_1:3529390-3529409 | None:intergenic | 30.0% | |
!! | GTTTTTGTTTGCTTTTCTGA+AGG | - | chr2_1:3529533-3529552 | None:intergenic | 30.0% |
AGCTTAAACTGCATTTAAAG+AGG | + | chr2_1:3529651-3529670 | Msa0188340:CDS | 30.0% | |
GCTTAAACTGCATTTAAAGA+GGG | + | chr2_1:3529652-3529671 | Msa0188340:CDS | 30.0% | |
! | TTTTCCTTGACATAGTACAT+TGG | + | chr2_1:3530134-3530153 | Msa0188340:three_prime_UTR | 30.0% |
ATAACCAATGTACTATGTCA+AGG | - | chr2_1:3530141-3530160 | None:intergenic | 30.0% | |
! | TGACATAGTACATTGGTTAT+CGG | + | chr2_1:3530141-3530160 | Msa0188340:three_prime_UTR | 30.0% |
TTAGGAATTAGTTCCTATCG+AGG | - | chr2_1:3524752-3524771 | None:intergenic | 35.0% | |
TTGTTTGACCCATTTAACAG+CGG | - | chr2_1:3524898-3524917 | None:intergenic | 35.0% | |
CTGTTAAATGGGTCAAACAA+TGG | + | chr2_1:3524898-3524917 | Msa0188340:CDS | 35.0% | |
GAAGTGTATGCTGTTAAGAT+GGG | + | chr2_1:3525056-3525075 | Msa0188340:CDS | 35.0% | |
AAAATGCAAATGGGCCAAAA+GGG | - | chr2_1:3525480-3525499 | None:intergenic | 35.0% | |
AAAAATGCAAATGGGCCAAA+AGG | - | chr2_1:3525481-3525500 | None:intergenic | 35.0% | |
!!! | TGGTTTTTTCTCTTTCGTTC+CGG | + | chr2_1:3525529-3525548 | Msa0188340:intron | 35.0% |
TTCATATGCAAACGGATCAA+GGG | - | chr2_1:3525613-3525632 | None:intergenic | 35.0% | |
ATTCATATGCAAACGGATCA+AGG | - | chr2_1:3525614-3525633 | None:intergenic | 35.0% | |
CTAAGATTCATGTGCAAACA+TGG | + | chr2_1:3525688-3525707 | Msa0188340:intron | 35.0% | |
GTTCTCAGTCTTCAAATCTA+TGG | - | chr2_1:3525671-3525690 | None:intergenic | 35.0% | |
GTAATGCTTCATTTCTACGT+TGG | + | chr2_1:3526105-3526124 | Msa0188340:intron | 35.0% | |
AGTTGAATGTTAAGCAAGCT+TGG | + | chr2_1:3526290-3526309 | Msa0188340:intron | 35.0% | |
GGAAAGACATTTATAGATGC+TGG | + | chr2_1:3526507-3526526 | Msa0188340:CDS | 35.0% | |
! | CAGTTTGTTTGCCATTATGA+GGG | + | chr2_1:3526567-3526586 | Msa0188340:CDS | 35.0% |
! | AGTTTGTTTGCCATTATGAG+GGG | + | chr2_1:3526568-3526587 | Msa0188340:CDS | 35.0% |
AGTATAGGTGAGTAAAGACA+TGG | - | chr2_1:3526750-3526769 | None:intergenic | 35.0% | |
! | TGTATGCTGGTTATGTTGTA+TGG | + | chr2_1:3526838-3526857 | Msa0188340:intron | 35.0% |
TCTTATGTTTGCCAAATGTC+AGG | + | chr2_1:3526956-3526975 | Msa0188340:intron | 35.0% | |
GTTTCTGTTGCAGAAATTTC+TGG | + | chr2_1:3527007-3527026 | Msa0188340:intron | 35.0% | |
AGATCAATAAACAAGGGCAA+TGG | - | chr2_1:3527126-3527145 | None:intergenic | 35.0% | |
GTATATGACTATTCAGCAGT+GGG | + | chr2_1:3527332-3527351 | Msa0188340:intron | 35.0% | |
TCATATCGGATTCAATCATG+GGG | - | chr2_1:3527545-3527564 | None:intergenic | 35.0% | |
CTTCATATCGGATTCAATCA+TGG | - | chr2_1:3527547-3527566 | None:intergenic | 35.0% | |
TCCGATATGAAGTTAGTTCA+TGG | + | chr2_1:3527555-3527574 | Msa0188340:intron | 35.0% | |
GCCATGAACTAACTTCATAT+CGG | - | chr2_1:3527559-3527578 | None:intergenic | 35.0% | |
ACAAGTCAAAACCTTGCATT+TGG | + | chr2_1:3527651-3527670 | Msa0188340:intron | 35.0% | |
!! | TTTTGTTTGTGCCAATATGC+AGG | + | chr2_1:3527737-3527756 | Msa0188340:intron | 35.0% |
TAGATCACAGTTACACAAAC+AGG | - | chr2_1:3527920-3527939 | None:intergenic | 35.0% | |
TGACGAAACTTACAATTTCG+GGG | - | chr2_1:3527983-3528002 | None:intergenic | 35.0% | |
TTAACGTTGTGCAATTTCAG+GGG | - | chr2_1:3528041-3528060 | None:intergenic | 35.0% | |
GATTAACGTTGTGCAATTTC+AGG | - | chr2_1:3528043-3528062 | None:intergenic | 35.0% | |
AACGGAAAAATTTGACAGAG+GGG | - | chr2_1:3528073-3528092 | None:intergenic | 35.0% | |
CTAACGGAAAAATTTGACAG+AGG | - | chr2_1:3528075-3528094 | None:intergenic | 35.0% | |
! | CAAAACGTCATGTTGACTAA+CGG | - | chr2_1:3528091-3528110 | None:intergenic | 35.0% |
ACATAAGTGCAAAACTTCAG+GGG | - | chr2_1:3528971-3528990 | None:intergenic | 35.0% | |
CACATAAGTGCAAAACTTCA+GGG | - | chr2_1:3528970-3528989 | None:intergenic | 35.0% | |
! | ATTTGAAAGGTATAACAGCC+AGG | - | chr2_1:3528416-3528435 | None:intergenic | 35.0% |
TGGACTCCCAAATATTTGAA+AGG | - | chr2_1:3528429-3528448 | None:intergenic | 35.0% | |
TTTCGAAGCAACTTGATCAA+TGG | + | chr2_1:3528628-3528647 | Msa0188340:intron | 35.0% | |
!! | ACTAATAATTGGCTTGGGAT+TGG | + | chr2_1:3528807-3528826 | Msa0188340:intron | 35.0% |
CACATAAGTGCAAAACTTCA+GGG | + | chr2_1:3528970-3528989 | Msa0188340:intron | 35.0% | |
ACATAAGTGCAAAACTTCAG+GGG | + | chr2_1:3528971-3528990 | Msa0188340:intron | 35.0% | |
CTAACAGAAAAATTTGACGG+AGG | + | chr2_1:3529017-3529036 | Msa0188340:intron | 35.0% | |
AACAGAAAAATTTGACGGAG+GGG | + | chr2_1:3529019-3529038 | Msa0188340:intron | 35.0% | |
TAACGTTGTACAATTTCAGG+GGG | + | chr2_1:3529052-3529071 | Msa0188340:intron | 35.0% | |
!!! | GAAGTTTTATTAATGTCGGG+GGG | + | chr2_1:3529081-3529100 | Msa0188340:intron | 35.0% |
!!! | AAGTTTTATTAATGTCGGGG+GGG | + | chr2_1:3529082-3529101 | Msa0188340:intron | 35.0% |
CGAAACTTACAATTTCAAGG+GGG | + | chr2_1:3529112-3529131 | Msa0188340:intron | 35.0% | |
GTGTTCACAATCACAATAGA+TGG | + | chr2_1:3529161-3529180 | Msa0188340:intron | 35.0% | |
TACTTTATCGGCACATCTAT+TGG | - | chr2_1:3529500-3529519 | None:intergenic | 35.0% | |
!! | TTTGTTTGCTTTTCTGAAGG+AGG | - | chr2_1:3529530-3529549 | None:intergenic | 35.0% |
CTTCATAAGGACATGCATAT+GGG | - | chr2_1:3529601-3529620 | None:intergenic | 35.0% | |
CATATGCATGTCCTTATGAA+GGG | + | chr2_1:3529600-3529619 | Msa0188340:CDS | 35.0% | |
! | TTTTCATCATTTATGTGGCC+AGG | - | chr2_1:3529683-3529702 | None:intergenic | 35.0% |
! | TTGCTTCTGACTTTTACCAT+TGG | - | chr2_1:3529786-3529805 | None:intergenic | 35.0% |
TAGCCATATTAAAAGTGGCA+GGG | - | chr2_1:3529877-3529896 | None:intergenic | 35.0% | |
TTAGCCATATTAAAAGTGGC+AGG | - | chr2_1:3529878-3529897 | None:intergenic | 35.0% | |
TCGTAAGTTTCTTCTTTCAC+TGG | - | chr2_1:3529911-3529930 | None:intergenic | 35.0% | |
! | AAACAACGAAGATGATGATG+AGG | + | chr2_1:3529997-3530016 | Msa0188340:CDS | 35.0% |
TGTTTGACCCATTTAACAGC+GGG | - | chr2_1:3524897-3524916 | None:intergenic | 40.0% | |
! | GGAAGTGTATGCTGTTAAGA+TGG | + | chr2_1:3525055-3525074 | Msa0188340:CDS | 40.0% |
ATGCTGTTAAGATGGGTAAC+AGG | + | chr2_1:3525063-3525082 | Msa0188340:CDS | 40.0% | |
! | GCACCCATAATTTTCCCTTT+AGG | + | chr2_1:3525152-3525171 | Msa0188340:intron | 40.0% |
CTACGGCAAAATTACACTTC+TGG | + | chr2_1:3525383-3525402 | Msa0188340:intron | 40.0% | |
TCATATGCAAACGGATCAAG+GGG | - | chr2_1:3525612-3525631 | None:intergenic | 40.0% | |
TTTGAAGACTGAGAACTCAC+AGG | - | chr2_1:3525726-3525745 | None:intergenic | 40.0% | |
TTTGAAGACTGAGAACTCAC+AGG | + | chr2_1:3525726-3525745 | Msa0188340:intron | 40.0% | |
TCATTCATACATGCAGCGTT+TGG | - | chr2_1:3525878-3525897 | None:intergenic | 40.0% | |
AAGGTTGTACTAGTACGACA+TGG | - | chr2_1:3525948-3525967 | None:intergenic | 40.0% | |
CTGTTCATGTGTGCTATGAA+AGG | - | chr2_1:3525967-3525986 | None:intergenic | 40.0% | |
TTCTAGTCTACCCTACTAAG+TGG | + | chr2_1:3526053-3526072 | Msa0188340:intron | 40.0% | |
TCTAGTCTACCCTACTAAGT+GGG | + | chr2_1:3526054-3526073 | Msa0188340:intron | 40.0% | |
! | AAGCCTTATCCCACTTAGTA+GGG | - | chr2_1:3526066-3526085 | None:intergenic | 40.0% |
AAGTACTTCAGTAGTTGGCT+CGG | - | chr2_1:3526463-3526482 | None:intergenic | 40.0% | |
TTATAGATGCTGGTGCTTTG+AGG | + | chr2_1:3526517-3526536 | Msa0188340:CDS | 40.0% | |
! | GCAGTTTGTTTGCCATTATG+AGG | + | chr2_1:3526566-3526585 | Msa0188340:CDS | 40.0% |
CAAGCACAGAAATGCATGTT+AGG | + | chr2_1:3526634-3526653 | Msa0188340:intron | 40.0% | |
AGTAACACACACATGTATGC+TGG | + | chr2_1:3526825-3526844 | Msa0188340:intron | 40.0% | |
! | GATTTTGTGTGTCCTCATGA+AGG | + | chr2_1:3527077-3527096 | Msa0188340:CDS | 40.0% |
TGCTGATATTCAGGGTATGA+TGG | - | chr2_1:3527201-3527220 | None:intergenic | 40.0% | |
GGTATATGACTATTCAGCAG+TGG | + | chr2_1:3527331-3527350 | Msa0188340:intron | 40.0% | |
ACTGTAAATCACCGTTTCCA+TGG | + | chr2_1:3527456-3527475 | Msa0188340:intron | 40.0% | |
CAGGTTAAAATCCAAGGAGA+AGG | - | chr2_1:3527763-3527782 | None:intergenic | 40.0% | |
!! | TCTCCTTGGATTTTAACCTG+AGG | + | chr2_1:3527763-3527782 | Msa0188340:CDS | 40.0% |
AGACCTCAGGTTAAAATCCA+AGG | - | chr2_1:3527769-3527788 | None:intergenic | 40.0% | |
CATTGCTTCCCATCATGAAA+AGG | + | chr2_1:3527881-3527900 | Msa0188340:CDS | 40.0% | |
ACGAAACTTACAATTTCGGG+GGG | - | chr2_1:3527981-3528000 | None:intergenic | 40.0% | |
GACGAAACTTACAATTTCGG+GGG | - | chr2_1:3527982-3528001 | None:intergenic | 40.0% | |
TAACGTTGTGCAATTTCAGG+GGG | - | chr2_1:3528040-3528059 | None:intergenic | 40.0% | |
ACGGAAAAATTTGACAGAGG+GGG | - | chr2_1:3528072-3528091 | None:intergenic | 40.0% | |
ATAAGTGCAAAACTTCAGGG+GGG | - | chr2_1:3528973-3528992 | None:intergenic | 40.0% | |
CATAAGTGCAAAACTTCAGG+GGG | - | chr2_1:3528972-3528991 | None:intergenic | 40.0% | |
GCACATAAGTGCAAAACTTC+AGG | - | chr2_1:3528969-3528988 | None:intergenic | 40.0% | |
!! | AGTTAAGCTTGCTACTTGGA+AGG | + | chr2_1:3528506-3528525 | Msa0188340:intron | 40.0% |
!! | GTTAAGCTTGCTACTTGGAA+GGG | + | chr2_1:3528507-3528526 | Msa0188340:intron | 40.0% |
AGTTGCTTCGAAAGATGTAC+AGG | - | chr2_1:3528621-3528640 | None:intergenic | 40.0% | |
ACAAGTGAGCAACAAATGTG+AGG | - | chr2_1:3528887-3528906 | None:intergenic | 40.0% | |
GCACATAAGTGCAAAACTTC+AGG | + | chr2_1:3528969-3528988 | Msa0188340:intron | 40.0% | |
CATAAGTGCAAAACTTCAGG+GGG | + | chr2_1:3528972-3528991 | Msa0188340:intron | 40.0% | |
ACAGAAAAATTTGACGGAGG+GGG | + | chr2_1:3529020-3529039 | Msa0188340:intron | 40.0% | |
AACGTTGTACAATTTCAGGG+GGG | + | chr2_1:3529053-3529072 | Msa0188340:intron | 40.0% | |
CGTCAAATGAAACCTCTAGA+TGG | - | chr2_1:3529233-3529252 | None:intergenic | 40.0% | |
! | ATGATGCATGACTGCACTTT+TGG | + | chr2_1:3529332-3529351 | Msa0188340:intron | 40.0% |
GGAGGAGTTGCATACTTTAT+CGG | - | chr2_1:3529512-3529531 | None:intergenic | 40.0% | |
ACAAAAACTGCTAGACCTTC+TGG | + | chr2_1:3529545-3529564 | Msa0188340:CDS | 40.0% | |
CCTTCATAAGGACATGCATA+TGG | - | chr2_1:3529602-3529621 | None:intergenic | 40.0% | |
CCATATGCATGTCCTTATGA+AGG | + | chr2_1:3529599-3529618 | Msa0188340:CDS | 40.0% | |
! | TCCTTATGAAGGGTGTGAAA+AGG | + | chr2_1:3529610-3529629 | Msa0188340:CDS | 40.0% |
TGAAAATGCTATGCATGCTC+TGG | + | chr2_1:3529697-3529716 | Msa0188340:CDS | 40.0% | |
! | TATGGTGGAAAACGTTCCAA+TGG | + | chr2_1:3529767-3529786 | Msa0188340:CDS | 40.0% |
GTAAAAGTCAGAAGCAAAGC+AGG | + | chr2_1:3529789-3529808 | Msa0188340:CDS | 40.0% | |
!!! | GGCATTTTCAAGTTTGGCTT+GGG | - | chr2_1:3529815-3529834 | None:intergenic | 40.0% |
!!! | AGGCATTTTCAAGTTTGGCT+TGG | - | chr2_1:3529816-3529835 | None:intergenic | 40.0% |
!!! | GAAGGAGGCATTTTCAAGTT+TGG | - | chr2_1:3529821-3529840 | None:intergenic | 40.0% |
TTACGCTGAGCAACTTTAGA+AGG | - | chr2_1:3529839-3529858 | None:intergenic | 40.0% | |
! | TCTAAAGTTGCTCAGCGTAA+AGG | + | chr2_1:3529839-3529858 | Msa0188340:CDS | 40.0% |
CTAAAGTTGCTCAGCGTAAA+GGG | + | chr2_1:3529840-3529859 | Msa0188340:CDS | 40.0% | |
ATATTAAAAGTGGCAGGGGT+TGG | - | chr2_1:3529872-3529891 | None:intergenic | 40.0% | |
!!! | AACCCCTGCCACTTTTAATA+TGG | + | chr2_1:3529871-3529890 | Msa0188340:CDS | 40.0% |
AGCCATATTAAAAGTGGCAG+GGG | - | chr2_1:3529876-3529895 | None:intergenic | 40.0% | |
GATCGTGACAATGTTGAAGA+TGG | + | chr2_1:3529959-3529978 | Msa0188340:CDS | 40.0% | |
GTGACAATGTTGAAGATGGT+TGG | + | chr2_1:3529963-3529982 | Msa0188340:CDS | 40.0% | |
GGAAGAATGAATGATACCGT+AGG | + | chr2_1:3530162-3530181 | Msa0188340:three_prime_UTR | 40.0% | |
! | ATATTTTCTGCTGCGAATCG+CGG | + | chr2_1:3530231-3530250 | Msa0188340:three_prime_UTR | 40.0% |
TTCCTATCGAGGATGAAGCT+TGG | - | chr2_1:3524741-3524760 | None:intergenic | 45.0% | |
! | TCCCGTCAATTTAGCCCTTT+TGG | + | chr2_1:3525463-3525482 | Msa0188340:intron | 45.0% |
GCCAAAAGGGCTAAATTGAC+GGG | - | chr2_1:3525467-3525486 | None:intergenic | 45.0% | |
GGCCAAAAGGGCTAAATTGA+CGG | - | chr2_1:3525468-3525487 | None:intergenic | 45.0% | |
! | TTTGAGGTCCTGGTTCAAAC+CGG | - | chr2_1:3525551-3525570 | None:intergenic | 45.0% |
ATCCTGCTGCTCAAACAAGA+TGG | + | chr2_1:3525577-3525596 | Msa0188340:intron | 45.0% | |
TCCTGCTGCTCAAACAAGAT+GGG | + | chr2_1:3525578-3525597 | Msa0188340:intron | 45.0% | |
CATATGCAAACGGATCAAGG+GGG | - | chr2_1:3525611-3525630 | None:intergenic | 45.0% | |
TCATGTGCAAACATGGGTGA+AGG | + | chr2_1:3525695-3525714 | Msa0188340:intron | 45.0% | |
CTACCCTACTAAGTGGGATA+AGG | + | chr2_1:3526060-3526079 | Msa0188340:intron | 45.0% | |
! | CAAGCCTTATCCCACTTAGT+AGG | - | chr2_1:3526067-3526086 | None:intergenic | 45.0% |
CTACTAAGTGGGATAAGGCT+TGG | + | chr2_1:3526065-3526084 | Msa0188340:intron | 45.0% | |
! | ATAAGGCTTGGTTGTGTTGG+TGG | + | chr2_1:3526077-3526096 | Msa0188340:intron | 45.0% |
! | AGTACTTCAGTAGTTGGCTC+GGG | - | chr2_1:3526462-3526481 | None:intergenic | 45.0% |
CTTTGTAGCTATGAAGGCTG+TGG | + | chr2_1:3526486-3526505 | Msa0188340:CDS | 45.0% | |
AAACAAACTGCCTCTCTCCA+TGG | - | chr2_1:3526557-3526576 | None:intergenic | 45.0% | |
! | GGAAACTAGGATGGGAGTAT+AGG | - | chr2_1:3526765-3526784 | None:intergenic | 45.0% |
TCTTAATTCATACGGGGGAG+AGG | + | chr2_1:3527054-3527073 | Msa0188340:CDS | 45.0% | |
CTTAATTCATACGGGGGAGA+GGG | + | chr2_1:3527055-3527074 | Msa0188340:CDS | 45.0% | |
ACCGTTTCCATGGTCACTAT+GGG | + | chr2_1:3527466-3527485 | Msa0188340:intron | 45.0% | |
ACCCATAGTGACCATGGAAA+CGG | - | chr2_1:3527470-3527489 | None:intergenic | 45.0% | |
TTCGAAACCCATAGTGACCA+TGG | - | chr2_1:3527476-3527495 | None:intergenic | 45.0% | |
ATATGCCCATACCCAGATTG+TGG | + | chr2_1:3527822-3527841 | Msa0188340:CDS | 45.0% | |
TATGCCCATACCCAGATTGT+GGG | + | chr2_1:3527823-3527842 | Msa0188340:CDS | 45.0% | |
TCTTCCCACAATCTGGGTAT+GGG | - | chr2_1:3527830-3527849 | None:intergenic | 45.0% | |
CGTATCTCTTCCCACAATCT+GGG | - | chr2_1:3527836-3527855 | None:intergenic | 45.0% | |
GCTTCCCATCATGAAAAGGT+TGG | + | chr2_1:3527885-3527904 | Msa0188340:intron | 45.0% | |
CGAAACTTACAATTTCGGGG+GGG | - | chr2_1:3527980-3527999 | None:intergenic | 45.0% | |
AACGTTGTGCAATTTCAGGG+GGG | - | chr2_1:3528039-3528058 | None:intergenic | 45.0% | |
! | CAAGCATTGCACTTCAGACA+GGG | - | chr2_1:3528374-3528393 | None:intergenic | 45.0% |
TCGAAAGATGTACAGGCCAT+AGG | - | chr2_1:3528614-3528633 | None:intergenic | 45.0% | |
TGCACTTGGTTTCCATCTAG+AGG | + | chr2_1:3529218-3529237 | Msa0188340:intron | 45.0% | |
TATTGGTGTACTCTGCAGTG+AGG | - | chr2_1:3529483-3529502 | None:intergenic | 45.0% | |
! | GCCTTTTCACACCCTTCATA+AGG | - | chr2_1:3529614-3529633 | None:intergenic | 45.0% |
!! | CATTTAAAGAGGGAGCATCC+TGG | + | chr2_1:3529662-3529681 | Msa0188340:CDS | 45.0% |
GCAAGTGATCACGATGCTTA+TGG | + | chr2_1:3529749-3529768 | Msa0188340:CDS | 45.0% | |
AGTGATCACGATGCTTATGG+TGG | + | chr2_1:3529752-3529771 | Msa0188340:CDS | 45.0% | |
GTTTCTTCTTTCACTGGCCA+AGG | - | chr2_1:3529905-3529924 | None:intergenic | 45.0% | |
TGAAGACAGCGAAGAAACTG+AGG | + | chr2_1:3529931-3529950 | Msa0188340:CDS | 45.0% | |
GAAGATGGTTGGAGATATGC+TGG | + | chr2_1:3529974-3529993 | Msa0188340:CDS | 45.0% | |
!! | ATATAAAGATAAAAAAAATT+GGG | - | chr2_1:3528217-3528236 | None:intergenic | 5.0% |
CAAGGCTCCCGCTGTTAAAT+GGG | + | chr2_1:3524887-3524906 | Msa0188340:CDS | 50.0% | |
AAGACGTTGTTGCCACTGGT+GGG | + | chr2_1:3525034-3525053 | Msa0188340:CDS | 50.0% | |
! | CTTTCGTTCCGGTTTGAACC+AGG | + | chr2_1:3525540-3525559 | Msa0188340:intron | 50.0% |
CTTGTTTGAGCAGCAGGATG+AGG | - | chr2_1:3525576-3525595 | None:intergenic | 50.0% | |
! | GGGATAAGGCTTGGTTGTGT+TGG | + | chr2_1:3526074-3526093 | Msa0188340:intron | 50.0% |
!! | AGGAAGCATTCCCACATCCA+TGG | + | chr2_1:3526537-3526556 | Msa0188340:CDS | 50.0% |
ATTCCCACATCCATGGAGAG+AGG | + | chr2_1:3526544-3526563 | Msa0188340:CDS | 50.0% | |
GTTTGCCATTATGAGGGGTG+TGG | + | chr2_1:3526573-3526592 | Msa0188340:CDS | 50.0% | |
CCTTTCCACACCCCTCATAA+TGG | - | chr2_1:3526581-3526600 | None:intergenic | 50.0% | |
! | CCATTATGAGGGGTGTGGAA+AGG | + | chr2_1:3526578-3526597 | Msa0188340:CDS | 50.0% |
TCCTCATGAAGGCTGTGGTA+AGG | + | chr2_1:3527088-3527107 | Msa0188340:CDS | 50.0% | |
ACCTTACCACAGCCTTCATG+AGG | - | chr2_1:3527092-3527111 | None:intergenic | 50.0% | |
!! | GCTCTAAAGCTTCAGCTGCA+AGG | + | chr2_1:3527302-3527321 | Msa0188340:intron | 50.0% |
GCTTCAGCTGCAAGGTAATG+AGG | + | chr2_1:3527310-3527329 | Msa0188340:intron | 50.0% | |
CACCGTTTCCATGGTCACTA+TGG | + | chr2_1:3527465-3527484 | Msa0188340:intron | 50.0% | |
CAAGGAGAAGGCCTGCATAT+TGG | - | chr2_1:3527751-3527770 | None:intergenic | 50.0% | |
CAATATGCAGGCCTTCTCCT+TGG | + | chr2_1:3527749-3527768 | Msa0188340:intron | 50.0% | |
GTGTCTTCATGTGAGACCTC+AGG | - | chr2_1:3527782-3527801 | None:intergenic | 50.0% | |
CTCTTCCCACAATCTGGGTA+TGG | - | chr2_1:3527831-3527850 | None:intergenic | 50.0% | |
GCGTATCTCTTCCCACAATC+TGG | - | chr2_1:3527837-3527856 | None:intergenic | 50.0% | |
! | GCAAGCATTGCACTTCAGAC+AGG | - | chr2_1:3528375-3528394 | None:intergenic | 50.0% |
!! | AGACCTTCTGGAGCGACATA+CGG | + | chr2_1:3529557-3529576 | Msa0188340:CDS | 50.0% |
!! | TTCTGGAGCGACATACGGTT+CGG | + | chr2_1:3529562-3529581 | Msa0188340:CDS | 50.0% |
ACATGCATATGGGCGATCAG+AGG | - | chr2_1:3529591-3529610 | None:intergenic | 50.0% | |
! | CGCTGAGCAACTTTAGAAGG+AGG | - | chr2_1:3529836-3529855 | None:intergenic | 50.0% |
AGACAGCGAAGAAACTGAGG+AGG | + | chr2_1:3529934-3529953 | Msa0188340:CDS | 50.0% | |
AATCGCGGTAGTTTCTGACG+AGG | + | chr2_1:3530246-3530265 | Msa0188340:three_prime_UTR | 50.0% | |
GGCGTCTCTCAAAGAGAGAG+TGG | - | chr2_1:3524854-3524873 | None:intergenic | 55.0% | |
GAGCCTTGGACGTGAGAAAG+GGG | - | chr2_1:3524875-3524894 | None:intergenic | 55.0% | |
GGAGCCTTGGACGTGAGAAA+GGG | - | chr2_1:3524876-3524895 | None:intergenic | 55.0% | |
CCATTTAACAGCGGGAGCCT+TGG | - | chr2_1:3524889-3524908 | None:intergenic | 55.0% | |
CCAAGGCTCCCGCTGTTAAA+TGG | + | chr2_1:3524886-3524905 | Msa0188340:CDS | 55.0% | |
CCAGTGGCAACAACGTCTTG+TGG | - | chr2_1:3525033-3525052 | None:intergenic | 55.0% | |
CCACAAGACGTTGTTGCCAC+TGG | + | chr2_1:3525030-3525049 | Msa0188340:CDS | 55.0% | |
CAAGACGTTGTTGCCACTGG+TGG | + | chr2_1:3525033-3525052 | Msa0188340:CDS | 55.0% | |
CAGCATACACTTCCCACCAG+TGG | - | chr2_1:3525049-3525068 | None:intergenic | 55.0% | |
! | GGATGAGGAGTTTGAGGTCC+TGG | - | chr2_1:3525561-3525580 | None:intergenic | 55.0% |
GCAGCAGGATGAGGAGTTTG+AGG | - | chr2_1:3525567-3525586 | None:intergenic | 55.0% | |
! | GCCCATCTTGTTTGAGCAGC+AGG | - | chr2_1:3525582-3525601 | None:intergenic | 55.0% |
!! | GGTTCTGGCTCAGGAGCTAA+TGG | - | chr2_1:3526441-3526460 | None:intergenic | 55.0% |
!! | TCAGTAGTTGGCTCGGGTTC+TGG | - | chr2_1:3526456-3526475 | None:intergenic | 55.0% |
CTGCCTCTCTCCATGGATGT+GGG | - | chr2_1:3526550-3526569 | None:intergenic | 55.0% | |
ACTGCCTCTCTCCATGGATG+TGG | - | chr2_1:3526551-3526570 | None:intergenic | 55.0% | |
GTGTGTCCTCATGAAGGCTG+TGG | + | chr2_1:3527083-3527102 | Msa0188340:CDS | 55.0% | |
GAACCGTATGTCGCTCCAGA+AGG | - | chr2_1:3529563-3529582 | None:intergenic | 55.0% | |
CAGCGAAGAAACTGAGGAGG+AGG | + | chr2_1:3529937-3529956 | Msa0188340:CDS | 55.0% | |
ACGCCCCTTTCTCACGTCCA+AGG | + | chr2_1:3524869-3524888 | Msa0188340:CDS | 60.0% | |
GGGAGCCTTGGACGTGAGAA+AGG | - | chr2_1:3524877-3524896 | None:intergenic | 60.0% | |
!! | GTTGGCTCGGGTTCTGGCTC+AGG | - | chr2_1:3526450-3526469 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 3524738 | 3530319 | 3524738 | ID=Msa0188340;Name=Msa0188340 |
chr2_1 | mRNA | 3524738 | 3530319 | 3524738 | ID=Msa0188340-mRNA-1;Parent=Msa0188340;Name=Msa0188340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|1|1|6|280|375 |
chr2_1 | exon | 3524738 | 3524919 | 3524738 | ID=Msa0188340-mRNA-1:exon:1446;Parent=Msa0188340-mRNA-1 |
chr2_1 | exon | 3525026 | 3525084 | 3525026 | ID=Msa0188340-mRNA-1:exon:1447;Parent=Msa0188340-mRNA-1 |
chr2_1 | exon | 3526400 | 3526599 | 3526400 | ID=Msa0188340-mRNA-1:exon:1448;Parent=Msa0188340-mRNA-1 |
chr2_1 | exon | 3527020 | 3527109 | 3527020 | ID=Msa0188340-mRNA-1:exon:1449;Parent=Msa0188340-mRNA-1 |
chr2_1 | exon | 3527759 | 3527902 | 3527759 | ID=Msa0188340-mRNA-1:exon:1450;Parent=Msa0188340-mRNA-1 |
chr2_1 | exon | 3529491 | 3530319 | 3529491 | ID=Msa0188340-mRNA-1:exon:1451;Parent=Msa0188340-mRNA-1 |
chr2_1 | five_prime_UTR | 3524738 | 3524833 | 3524738 | ID=Msa0188340-mRNA-1:five_prime_utr;Parent=Msa0188340-mRNA-1 |
chr2_1 | CDS | 3524834 | 3524919 | 3524834 | ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1 |
chr2_1 | CDS | 3525026 | 3525084 | 3525026 | ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1 |
chr2_1 | CDS | 3526400 | 3526599 | 3526400 | ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1 |
chr2_1 | CDS | 3527020 | 3527109 | 3527020 | ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1 |
chr2_1 | CDS | 3527759 | 3527902 | 3527759 | ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1 |
chr2_1 | CDS | 3529491 | 3530039 | 3529491 | ID=Msa0188340-mRNA-1:cds;Parent=Msa0188340-mRNA-1 |
chr2_1 | three_prime_UTR | 3530040 | 3530319 | 3530040 | ID=Msa0188340-mRNA-1:three_prime_utr;Parent=Msa0188340-mRNA-1 |
Gene Sequence |
Protein sequence |