AlfalfaGEDB | Msa0270600

M. sativa cultivar zhongmu-4 / Msa0270600

KEGG: K09201|K20828
GO: GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00096.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270600	XP_024633268.1	99.200	375	3	0	1	375	1	375	0.0	781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270600	sp\|Q2V3L3\|YY1_ARATH	68.407	364	99	7	10	361	12	371	6.43e-160	457

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0270600	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037570	Msa0270600	0.811623	6.381863e-51	-8.615850e-47
Msa0044000	Msa0270600	-0.818167	2.257838e-52	-8.615850e-47
Msa0127800	Msa0270600	-0.802135	6.478083e-49	-8.615850e-47
Msa0188340	Msa0270600	0.950634	1.096934e-108	-8.615850e-47
Msa0270600	Msa0768370	-0.802633	5.113357e-49	-8.615850e-47
Msa0270600	Msa0820850	-0.808124	3.613759e-50	-8.615850e-47
Msa0270600	Msa0927380	-0.815801	7.674183e-52	-8.615850e-47
Msa0270600	Msa1121490	-0.814380	1.586687e-51	-8.615850e-47
Msa0270600	Msa1186950	0.807340	5.303352e-50	-8.615850e-47
Msa0270600	Msa1211140	0.805920	1.057318e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270600	MtrunA17_Chr2g0277381	99.200	375	3	0	1	375	1	375	0.0	781
Msa0270600	MtrunA17_Chr1g0164511	28.497	193	118	5	77	256	13	198	1.51e-12	67.4
Msa0270600	MtrunA17_Chr3g0082161	28.497	193	118	5	77	256	13	198	1.96e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270600	AT4G06634.1	68.407	364	99	7	10	361	12	371	6.54e-161	457
Msa0270600	AT4G06634.3	65.489	368	96	9	10	361	12	364	1.73e-148	425
Msa0270600	AT4G06634.2	65.964	332	97	7	42	361	6	333	7.00e-135	389
Msa0270600	AT3G48430.1	27.273	121	80	2	77	195	1243	1357	2.96e-11	65.9
Msa0270600	AT3G48430.2	27.273	121	80	2	77	195	884	998	3.79e-11	65.5

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Find 104 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACTGCCTCTCTCCA+TGG	0.576594	2_3:-1826201	None:intergenic
AAACAACGAAGATGATGATG+AGG	0.613095	2_3:+1829647	Msa0270600:CDS
AACAAATTCTGAGAAATCAA+TGG	0.509712	2_3:+1824415	Msa0270600:exon
AAGACATTTCTTAATTCATA+CGG	0.439731	2_3:+1826693	Msa0270600:CDS
AAGACGTTGTTGCCACTGGT+GGG	0.637791	2_3:+1824720	Msa0270600:CDS
AAGTACTTCAGTAGTTGGCT+CGG	0.511218	2_3:-1826107	None:intergenic
AATCGCGGTAGTTTCTGACG+CGG	0.713483	2_3:+1829893	Msa0270600:three_prime_UTR
ACATGCATATGGGCGATCAG+AGG	0.622960	2_3:-1829238	None:intergenic
ACATTTCTTAATTCATACGG+GGG	0.674154	2_3:+1826696	Msa0270600:CDS
ACCTTACCACAGCCTTCATG+AGG	0.637114	2_3:-1826736	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGGGTTTGAAGAGAAATT+AGG	-	chr2_3:1824370-1824389	None:intergenic	30.0%
AGCTCAATTGACAGTAAAAA+AGG	-	chr2_3:1824780-1824799	None:intergenic	30.0%
TCATGTTCTTAATCAAACGA+TGG	+	chr2_3:1824978-1824997	Msa0270600:intron	30.0%
TAAGATTCATGTGCAAACAT+GGG	-	chr2_3:1825390-1825409	None:intergenic	30.0%
TCATATGCAAAAGGATCAAA+AGG	+	chr2_3:1825428-1825447	Msa0270600:intron	30.0%
CATATGCAAAAGGATCAAAA+GGG	+	chr2_3:1825429-1825448	Msa0270600:intron	30.0%
AAGATAACTGGAAAGCAAAT+TGG	-	chr2_3:1825823-1825842	None:intergenic	30.0%
CATAAATGCCTTGAAAGAAA+AGG	+	chr2_3:1826054-1826073	Msa0270600:CDS	30.0%
CAAAAAATGGAAACTAGGAT+GGG	-	chr2_3:1826420-1826439	None:intergenic	30.0%
ACAAAAAATGGAAACTAGGA+TGG	-	chr2_3:1826421-1826440	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	1824338	1829966	1824338	ID=Msa0270600;Name=Msa0270600
chr2_3	mRNA	1824338	1829966	1824338	ID=Msa0270600-mRNA-1;Parent=Msa0270600;Name=Msa0270600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96\|1\|1\|1\|1\|1\|6\|277\|375
chr2_3	exon	1824338	1824519	1824338	ID=Msa0270600-mRNA-1:exon:849;Parent=Msa0270600-mRNA-1
chr2_3	exon	1824712	1824770	1824712	ID=Msa0270600-mRNA-1:exon:850;Parent=Msa0270600-mRNA-1
chr2_3	exon	1826047	1826246	1826047	ID=Msa0270600-mRNA-1:exon:851;Parent=Msa0270600-mRNA-1
chr2_3	exon	1826667	1826756	1826667	ID=Msa0270600-mRNA-1:exon:852;Parent=Msa0270600-mRNA-1
chr2_3	exon	1827411	1827554	1827411	ID=Msa0270600-mRNA-1:exon:853;Parent=Msa0270600-mRNA-1
chr2_3	exon	1829141	1829966	1829141	ID=Msa0270600-mRNA-1:exon:854;Parent=Msa0270600-mRNA-1
chr2_3	five_prime_UTR	1824338	1824433	1824338	ID=Msa0270600-mRNA-1:five_prime_utr;Parent=Msa0270600-mRNA-1
chr2_3	CDS	1824434	1824519	1824434	ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3	CDS	1824712	1824770	1824712	ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3	CDS	1826047	1826246	1826047	ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3	CDS	1826667	1826756	1826667	ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3	CDS	1827411	1827554	1827411	ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3	CDS	1829141	1829689	1829141	ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3	three_prime_UTR	1829690	1829966	1829690	ID=Msa0270600-mRNA-1:three_prime_utr;Parent=Msa0270600-mRNA-1

Gene Sequence

>Msa0270600

ATGGAGACTCACTACAACCACTCTCTCTTTGAGAGACGCCCCTTTCTCACGTCCAAGGCTCCCGCTGTTAAATGGGTCAAACAATGGGTTCCACAAGACGTTGTTGCCACTGGTGGGAAGTGTATGCTGTTAAGATGGGTAACAGAGGATACCATAAATGCCTTGAAAGAAAAGGAAAAAGAACCATTAGCTCCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAGTTTGTTTGCCATTATGAGGGGTGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACGGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCAGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCCCATCATGAAAAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAAACTGCTAGACCTTCTGGAGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTAAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCTGCCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA

Protein sequence

>Msa0270600

METHYNHSLFERRPFLTSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTINALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED*