AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0270600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270600 MtrunA17_Chr2g0277381 99.200 375 3 0 1 375 1 375 0.0 781
Msa0270600 MtrunA17_Chr1g0164511 28.497 193 118 5 77 256 13 198 1.51e-12 67.4
Msa0270600 MtrunA17_Chr3g0082161 28.497 193 118 5 77 256 13 198 1.96e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270600 AT4G06634.1 68.407 364 99 7 10 361 12 371 6.54e-161 457
Msa0270600 AT4G06634.3 65.489 368 96 9 10 361 12 364 1.73e-148 425
Msa0270600 AT4G06634.2 65.964 332 97 7 42 361 6 333 7.00e-135 389
Msa0270600 AT3G48430.1 27.273 121 80 2 77 195 1243 1357 2.96e-11 65.9
Msa0270600 AT3G48430.2 27.273 121 80 2 77 195 884 998 3.79e-11 65.5

Find 104 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGCTCCCGCTGTTAAA+TGG 0.155162 2_3:+1824486 Msa0270600:CDS
TCAGTAGTTGGCTCGGGTTC+TGG 0.253968 2_3:-1826100 None:intergenic
TTAGGGTTTGAAGAGAAATT+AGG 0.268581 2_3:-1824367 None:intergenic
TACTTTATCGGCACATCTAT+TGG 0.312836 2_3:-1829147 None:intergenic
GCGTATCTCTTCCCACAATC+TGG 0.321481 2_3:-1827486 None:intergenic
TTACGCTGAGCAACTTTAGA+AGG 0.345270 2_3:-1829486 None:intergenic
CCTTTCCACACCCCTCATAA+TGG 0.376204 2_3:-1826225 None:intergenic
GCAGTTTGTTTGCCATTATG+AGG 0.386353 2_3:+1826213 Msa0270600:CDS
CTAAAGTTGCTCAGCGTAAA+GGG 0.392561 2_3:+1829490 Msa0270600:CDS
ATGCTGTTAAGATGGGTAAC+AGG 0.398286 2_3:+1824749 Msa0270600:CDS
GGAGGAGTTGCATACTTTAT+CGG 0.401475 2_3:-1829159 None:intergenic
TGACATAGTACATTGGTTAT+CGG 0.402772 2_3:+1829791 Msa0270600:three_prime_UTR
CCTTCATAAGGACATGCATA+TGG 0.405323 2_3:-1829249 None:intergenic
CTCTTCCCACAATCTGGGTA+TGG 0.407430 2_3:-1827480 None:intergenic
GGTTCTGGCTCAGGAGCTAA+TGG 0.412849 2_3:-1826085 None:intergenic
GTTGGCTCGGGTTCTGGCTC+AGG 0.414498 2_3:-1826094 None:intergenic
GGGAGCCTTGGACGTGAGAA+AGG 0.426315 2_3:-1824474 None:intergenic
GTTTCTTCTTTCACTGGCCA+AGG 0.432210 2_3:-1829552 None:intergenic
CCATTTAACAGCGGGAGCCT+TGG 0.434294 2_3:-1824486 None:intergenic
CAAGGCTCCCGCTGTTAAAT+GGG 0.434337 2_3:+1824487 Msa0270600:CDS
AAGACATTTCTTAATTCATA+CGG 0.439731 2_3:+1826693 Msa0270600:CDS
GCAAGTGATCACGATGCTTA+TGG 0.440454 2_3:+1829399 Msa0270600:CDS
AGACATTTCTTAATTCATAC+GGG 0.448713 2_3:+1826694 Msa0270600:CDS
TTATAGATGCTGGTGCTTTG+AGG 0.456478 2_3:+1826164 Msa0270600:CDS
TCTAAAGTTGCTCAGCGTAA+AGG 0.457185 2_3:+1829489 Msa0270600:CDS
TCGTAAGTTTCTTCTTTCAC+TGG 0.459248 2_3:-1829558 None:intergenic
CAATATGCAGGCCTTCTCCT+TGG 0.459806 2_3:+1827401 Msa0270600:intron
CAGTTTGTTTGCCATTATGA+GGG 0.471982 2_3:+1826214 Msa0270600:CDS
CATAAATGCCTTGAAAGAAA+AGG 0.473578 2_3:+1826054 Msa0270600:CDS
CATTGCTTCCCATCATGAAA+AGG 0.475165 2_3:+1827533 Msa0270600:CDS
TAATAATGCTGAAAATGAAA+TGG 0.485384 2_3:+1829371 Msa0270600:CDS
CCACAAGACGTTGTTGCCAC+TGG 0.487699 2_3:+1824716 Msa0270600:CDS
AGCTTAAACTGCATTTAAAG+AGG 0.494339 2_3:+1829301 Msa0270600:CDS
ATATTAAAAGTGGCAGGGGT+TGG 0.494716 2_3:-1829519 None:intergenic
TTAGCCATATTAAAAGTGGC+AGG 0.498748 2_3:-1829525 None:intergenic
CCATATGCATGTCCTTATGA+AGG 0.500362 2_3:+1829249 Msa0270600:CDS
CTTTGTAGCTATGAAGGCTG+TGG 0.501431 2_3:+1826133 Msa0270600:CDS
TCCTTATGAAGGGTGTGAAA+AGG 0.501607 2_3:+1829260 Msa0270600:CDS
TGAAAATGCTATGCATGCTC+TGG 0.502807 2_3:+1829347 Msa0270600:CDS
AACAAATTCTGAGAAATCAA+TGG 0.509712 2_3:+1824415 Msa0270600:exon
GGAAGTGTATGCTGTTAAGA+TGG 0.510117 2_3:+1824741 Msa0270600:CDS
AAGTACTTCAGTAGTTGGCT+CGG 0.511218 2_3:-1826107 None:intergenic
GAAGATGGTTGGAGATATGC+TGG 0.512941 2_3:+1829624 Msa0270600:CDS
AGGAAGCATTCCCACATCCA+TGG 0.515275 2_3:+1826184 Msa0270600:CDS
ACTGCCTCTCTCCATGGATG+TGG 0.516577 2_3:-1826195 None:intergenic
GGAGCCTTGGACGTGAGAAA+GGG 0.516870 2_3:-1824473 None:intergenic
CGTATCTCTTCCCACAATCT+GGG 0.520117 2_3:-1827485 None:intergenic
CTTCATAAGGACATGCATAT+GGG 0.522116 2_3:-1829248 None:intergenic
GTAAAAGTCAGAAGCAAAGC+AGG 0.525445 2_3:+1829439 Msa0270600:CDS
AGTACTTCAGTAGTTGGCTC+GGG 0.526508 2_3:-1826106 None:intergenic
TTCTGGAGCGACATACGGTT+CGG 0.536084 2_3:+1829212 Msa0270600:CDS
CAGCGAAGAAACTGAGGAGG+AGG 0.538145 2_3:+1829587 Msa0270600:CDS
AGACCTTCTGGAGCGACATA+CGG 0.541337 2_3:+1829207 Msa0270600:CDS
GTGTCTTCATGTGAGACCTC+AGG 0.542819 2_3:-1827431 None:intergenic
ATTAATATAAATTCATCCTA+CGG 0.545288 2_3:-1829828 None:intergenic
TCTTCCCACAATCTGGGTAT+GGG 0.550401 2_3:-1827479 None:intergenic
CGCTGAGCAACTTTAGAAGG+AGG 0.554525 2_3:-1829483 None:intergenic
TATGCCCATACCCAGATTGT+GGG 0.558178 2_3:+1827475 Msa0270600:CDS
CTGTTAAATGGGTCAAACAA+TGG 0.559100 2_3:+1824498 Msa0270600:CDS
GTTTGCCATTATGAGGGGTG+TGG 0.559433 2_3:+1826220 Msa0270600:CDS
CAAGACGTTGTTGCCACTGG+TGG 0.559549 2_3:+1824719 Msa0270600:CDS
CCATTATGAGGGGTGTGGAA+AGG 0.561192 2_3:+1826225 Msa0270600:CDS
GTGACAATGTTGAAGATGGT+TGG 0.563304 2_3:+1829613 Msa0270600:CDS
GCTTAAACTGCATTTAAAGA+GGG 0.566396 2_3:+1829302 Msa0270600:CDS
AGCCATATTAAAAGTGGCAG+GGG 0.567185 2_3:-1829523 None:intergenic
GTGTGTCCTCATGAAGGCTG+TGG 0.567957 2_3:+1826730 Msa0270600:CDS
CATTTAAAGAGGGAGCATCC+TGG 0.569801 2_3:+1829312 Msa0270600:CDS
GGAAAGACATTTATAGATGC+TGG 0.570125 2_3:+1826154 Msa0270600:CDS
TCCTCATGAAGGCTGTGGTA+AGG 0.574286 2_3:+1826735 Msa0270600:CDS
TTCCTATCGAGGATGAAGCT+TGG 0.574345 2_3:-1824338 None:intergenic
TGTTTGACCCATTTAACAGC+GGG 0.574962 2_3:-1824494 None:intergenic
AAACAAACTGCCTCTCTCCA+TGG 0.576594 2_3:-1826201 None:intergenic
ACGCCCCTTTCTCACGTCCA+AGG 0.578019 2_3:+1824469 Msa0270600:CDS
GAAGTGTATGCTGTTAAGAT+GGG 0.578315 2_3:+1824742 Msa0270600:CDS
ATATGCCCATACCCAGATTG+TGG 0.578913 2_3:+1827474 Msa0270600:CDS
AGACCTCAGGTTAAAATCCA+AGG 0.579184 2_3:-1827418 None:intergenic
CTGCCTCTCTCCATGGATGT+GGG 0.586666 2_3:-1826194 None:intergenic
TAGCCATATTAAAAGTGGCA+GGG 0.588156 2_3:-1829524 None:intergenic
AGTTTGTTTGCCATTATGAG+GGG 0.589676 2_3:+1826215 Msa0270600:CDS
CAGGTTAAAATCCAAGGAGA+AGG 0.604105 2_3:-1827412 None:intergenic
GAACCGTATGTCGCTCCAGA+AGG 0.605176 2_3:-1829210 None:intergenic
CATATGCATGTCCTTATGAA+GGG 0.608937 2_3:+1829250 Msa0270600:CDS
ATAACCAATGTACTATGTCA+AGG 0.609060 2_3:-1829788 None:intergenic
AAACAACGAAGATGATGATG+AGG 0.613095 2_3:+1829647 Msa0270600:CDS
GAGCCTTGGACGTGAGAAAG+GGG 0.615789 2_3:-1824472 None:intergenic
GATCGTGACAATGTTGAAGA+TGG 0.616587 2_3:+1829609 Msa0270600:CDS
TATGGTGGAAAACGTTCCAA+TGG 0.620791 2_3:+1829417 Msa0270600:CDS
ACATGCATATGGGCGATCAG+AGG 0.622960 2_3:-1829238 None:intergenic
AGTGATCACGATGCTTATGG+TGG 0.628298 2_3:+1829402 Msa0270600:CDS
GGCGTCTCTCAAAGAGAGAG+TGG 0.633941 2_3:-1824451 None:intergenic
ACCTTACCACAGCCTTCATG+AGG 0.637114 2_3:-1826736 None:intergenic
AAGACGTTGTTGCCACTGGT+GGG 0.637791 2_3:+1824720 Msa0270600:CDS
CACCAAGCTTCATCCTCGAT+AGG 0.642148 2_3:+1824336 None:intergenic
GACATTTCTTAATTCATACG+GGG 0.654030 2_3:+1826695 Msa0270600:CDS
CAGCATACACTTCCCACCAG+TGG 0.655133 2_3:-1824732 None:intergenic
CCAGTGGCAACAACGTCTTG+TGG 0.655732 2_3:-1824716 None:intergenic
ATTCCCACATCCATGGAGAG+AGG 0.655979 2_3:+1826191 Msa0270600:CDS
TTAGGAATTAGTTCCTATCG+AGG 0.656153 2_3:-1824349 None:intergenic
TGAAGACAGCGAAGAAACTG+AGG 0.661243 2_3:+1829581 Msa0270600:CDS
AGACAGCGAAGAAACTGAGG+AGG 0.668007 2_3:+1829584 Msa0270600:CDS
GGAAGAATGAATGATACCGT+AGG 0.673395 2_3:+1829812 Msa0270600:three_prime_UTR
ACATTTCTTAATTCATACGG+GGG 0.674154 2_3:+1826696 Msa0270600:CDS
TTGTTTGACCCATTTAACAG+CGG 0.696885 2_3:-1824495 None:intergenic
AATCGCGGTAGTTTCTGACG+CGG 0.713483 2_3:+1829893 Msa0270600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTCAATTTTTTTTTTTTT+TGG - chr2_3:1824634-1824653 None:intergenic 10.0%
!! TATTTATATTCTATTCTAAA+TGG + chr2_3:1827590-1827609 Msa0270600:intron 10.0%
!! TTGATTATTATAAATTTAAG+GGG - chr2_3:1827805-1827824 None:intergenic 10.0%
!! CTTGATTATTATAAATTTAA+GGG - chr2_3:1827806-1827825 None:intergenic 10.0%
!! CATATAAAGATAAAAAAAAT+TGG - chr2_3:1827868-1827887 None:intergenic 10.0%
!!! ATATATAAATTTTAAAGTTC+GGG + chr2_3:1828587-1828606 Msa0270600:intron 10.0%
!!! TTTTTTTGTTAAAGTTTGTT+TGG + chr2_3:1824653-1824672 Msa0270600:intron 15.0%
!! TGTTATCTAATATTAAGTTA+AGG - chr2_3:1825096-1825115 None:intergenic 15.0%
!! CATTAAAAAAAAATGCAAAT+GGG - chr2_3:1825175-1825194 None:intergenic 15.0%
!! AATTTACCAAAAAAAAGTAA+AGG + chr2_3:1825455-1825474 Msa0270600:intron 15.0%
!! AATGTACAATAAATATTGTT+TGG + chr2_3:1827063-1827082 Msa0270600:intron 15.0%
!! GCTTGATTATTATAAATTTA+AGG - chr2_3:1827807-1827826 None:intergenic 15.0%
!! TTTATAATAATCAAGCAAAT+TGG + chr2_3:1827811-1827830 Msa0270600:intron 15.0%
!! AAGAAAATCTTTAAACTATA+TGG + chr2_3:1827941-1827960 Msa0270600:intron 15.0%
!!! TATATAAATTTTAAAGTTCG+GGG + chr2_3:1828588-1828607 Msa0270600:intron 15.0%
!!! AATTGAAGTTTTATTAATGT+CGG + chr2_3:1828727-1828746 Msa0270600:intron 15.0%
!!! TATTTTAATACTATTTTGCA+AGG + chr2_3:1828918-1828937 Msa0270600:intron 15.0%
!! AAGAAAAAATCTAATATTGT+AGG - chr2_3:1829735-1829754 None:intergenic 15.0%
!! ATTAATATAAATTCATCCTA+CGG - chr2_3:1829831-1829850 None:intergenic 15.0%
!!! ATTGAAAAATTTTAGGGTTA+GGG - chr2_3:1824387-1824406 None:intergenic 20.0%
!!! ACAGAGATTGAAAAATTTTA+GGG - chr2_3:1824393-1824412 None:intergenic 20.0%
!! AACATTACAAATAACCTAAA+GGG - chr2_3:1824855-1824874 None:intergenic 20.0%
!!! TTTGTAATGTTGATTTATCA+TGG + chr2_3:1824864-1824883 Msa0270600:intron 20.0%
!! CCATTAAAAAAAAATGCAAA+TGG - chr2_3:1825176-1825195 None:intergenic 20.0%
!!! CCATTTGCATTTTTTTTTAA+TGG + chr2_3:1825173-1825192 Msa0270600:intron 20.0%
!!! ATTATGAACAGATTTTTTTG+GGG - chr2_3:1825673-1825692 None:intergenic 20.0%
!!! CATTATGAACAGATTTTTTT+GGG - chr2_3:1825674-1825693 None:intergenic 20.0%
!! CATACAATATAATAATTGCT+TGG - chr2_3:1825970-1825989 None:intergenic 20.0%
!! AATTACAAAAAATGGAAACT+AGG - chr2_3:1826425-1826444 None:intergenic 20.0%
!!! TTTCCATTTTTTGTAATTTC+AGG + chr2_3:1826427-1826446 Msa0270600:intron 20.0%
!! ACTAGATGGAAAAATTAATA+AGG - chr2_3:1826539-1826558 None:intergenic 20.0%
!!! AACTTTTTTATGAAACTAGA+TGG - chr2_3:1826553-1826572 None:intergenic 20.0%
!! AAGACATTTCTTAATTCATA+CGG + chr2_3:1826693-1826712 Msa0270600:CDS 20.0%
!! ATATTTGATCATTACAATGA+AGG - chr2_3:1826925-1826944 None:intergenic 20.0%
!! TAGAAGATGATTAATAGATT+TGG + chr2_3:1827020-1827039 Msa0270600:intron 20.0%
!! AGAAGATGATTAATAGATTT+GGG + chr2_3:1827021-1827040 Msa0270600:intron 20.0%
!!! AATTTTAGTATCATATTGTC+TGG + chr2_3:1827333-1827352 Msa0270600:intron 20.0%
!!! TTGAAATTTTGTTAATGTCA+GGG - chr2_3:1827665-1827684 None:intergenic 20.0%
!!! ATTGAAATTTTGTTAATGTC+AGG - chr2_3:1827666-1827685 None:intergenic 20.0%
!!! AGAATATTTTTTTTGTCACA+AGG - chr2_3:1827838-1827857 None:intergenic 20.0%
!!! AGAAAGAATAATTTTTATGC+TGG + chr2_3:1827989-1828008 Msa0270600:intron 20.0%
!! TGTTATACCTTTCAAATATT+TGG + chr2_3:1828069-1828088 Msa0270600:intron 20.0%
!! GTTATACCTTTCAAATATTT+GGG + chr2_3:1828070-1828089 Msa0270600:intron 20.0%
!!! TAAGATTTTGGACTAATAAT+TGG + chr2_3:1828446-1828465 Msa0270600:intron 20.0%
!!! ATATAAATTTTAAAGTTCGG+GGG + chr2_3:1828589-1828608 Msa0270600:intron 20.0%
!!! ATTAACGTTGTACAATTTTA+GGG + chr2_3:1828700-1828719 Msa0270600:intron 20.0%
!!! ATTGAAGTTTTATTAATGTC+GGG + chr2_3:1828728-1828747 Msa0270600:intron 20.0%
!! TAATAATGCTGAAAATGAAA+TGG + chr2_3:1829371-1829390 Msa0270600:CDS 20.0%
!!! TTTTTTAGCCATATTAAAAG+TGG - chr2_3:1829532-1829551 None:intergenic 20.0%
!! AAAAAATCTAATATTGTAGG+AGG - chr2_3:1829732-1829751 None:intergenic 20.0%
!!! GATTGAAAAATTTTAGGGTT+AGG - chr2_3:1824388-1824407 None:intergenic 25.0%
!! CACAGAGATTGAAAAATTTT+AGG - chr2_3:1824394-1824413 None:intergenic 25.0%
!!! CTAAAATTTTTCAATCTCTG+TGG + chr2_3:1824392-1824411 Msa0270600:five_prime_UTR 25.0%
!! AACAAATTCTGAGAAATCAA+TGG + chr2_3:1824415-1824434 Msa0270600:exon 25.0%
!!! AATTGAGTTGATGAAGAAAA+GGG - chr2_3:1824530-1824549 None:intergenic 25.0%
!!! AAATTGAGTTGATGAAGAAA+AGG - chr2_3:1824531-1824550 None:intergenic 25.0%
! CAAAGTTGAGTTAAAAATTG+AGG - chr2_3:1824564-1824583 None:intergenic 25.0%
! ATCATAGCAATGTTATTATC+AGG + chr2_3:1824690-1824709 Msa0270600:intron 25.0%
! TCATAGCAATGTTATTATCA+GGG + chr2_3:1824691-1824710 Msa0270600:intron 25.0%
! ATTATGGGTGCTTAATTTAT+TGG - chr2_3:1824829-1824848 None:intergenic 25.0%
! TAACCTAAAGGGAAAATTAT+GGG - chr2_3:1824844-1824863 None:intergenic 25.0%
! ATAACCTAAAGGGAAAATTA+TGG - chr2_3:1824845-1824864 None:intergenic 25.0%
! CAACATTACAAATAACCTAA+AGG - chr2_3:1824856-1824875 None:intergenic 25.0%
! TAATGTCTAATCAGAAAGAT+AGG - chr2_3:1824916-1824935 None:intergenic 25.0%
! CAATTCATACTTGTAAAGTT+AGG - chr2_3:1825014-1825033 None:intergenic 25.0%
! CTAACTTTACAAGTATGAAT+TGG + chr2_3:1825012-1825031 Msa0270600:intron 25.0%
! GATGTTTCATAAAAACTCTA+CGG + chr2_3:1825052-1825071 Msa0270600:intron 25.0%
! GAAAATGTTACTAGTTAGAT+TGG + chr2_3:1825195-1825214 Msa0270600:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr2_3:1825419-1825438 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG + chr2_3:1825318-1825337 Msa0270600:intron 25.0%
! CTTGAAAATTCATATGCAAA+AGG + chr2_3:1825419-1825438 Msa0270600:intron 25.0%
!!! TTTGCTCCTTTACTTTTTTT+TGG - chr2_3:1825464-1825483 None:intergenic 25.0%
!! TATCTGAAATTAAGAGATCA+CGG + chr2_3:1825488-1825507 Msa0270600:intron 25.0%
! TATGAATGAATTAATACTGC+TGG + chr2_3:1825536-1825555 Msa0270600:intron 25.0%
!! TATTTGAGATAGTTATGTCA+GGG - chr2_3:1825641-1825660 None:intergenic 25.0%
!!! TTATGAACAGATTTTTTTGG+GGG - chr2_3:1825672-1825691 None:intergenic 25.0%
!!! GCATTATGAACAGATTTTTT+TGG - chr2_3:1825675-1825694 None:intergenic 25.0%
! AGATTGTTATGAAAGATAAC+TGG - chr2_3:1825835-1825854 None:intergenic 25.0%
!!! ATGGTTTTATTGATGCAAAA+AGG + chr2_3:1825875-1825894 Msa0270600:intron 25.0%
!! TTCTTTTTCCTTTTCTTTCA+AGG - chr2_3:1826065-1826084 None:intergenic 25.0%
! CTTTAATGTTGTAACATACT+TGG + chr2_3:1826304-1826323 Msa0270600:intron 25.0%
! AGCTTCACAAAAATTGTTAA+AGG - chr2_3:1826342-1826361 None:intergenic 25.0%
! ACACCTGAAATTACAAAAAA+TGG - chr2_3:1826433-1826452 None:intergenic 25.0%
! AGACATTTCTTAATTCATAC+GGG + chr2_3:1826694-1826713 Msa0270600:CDS 25.0%
! CTTAAGAGATCAATAAACAA+GGG - chr2_3:1826779-1826798 None:intergenic 25.0%
!! TTTTGAATCACCTTTATGTT+TGG + chr2_3:1826816-1826835 Msa0270600:intron 25.0%
! GAAAAAACAGATCAGTAATT+AGG - chr2_3:1826903-1826922 None:intergenic 25.0%
! AAACAATAATACCACAAAGA+AGG - chr2_3:1827269-1827288 None:intergenic 25.0%
! CTTTGTGGTATTATTGTTTA+AGG + chr2_3:1827270-1827289 Msa0270600:intron 25.0%
!! AATTATCTTTTCCAAATGCA+AGG - chr2_3:1827317-1827336 None:intergenic 25.0%
! CTATTCTAAATGGAGTAAAT+AGG + chr2_3:1827600-1827619 Msa0270600:intron 25.0%
! ATTGACGAAACTTACAATTT+CGG - chr2_3:1828757-1828776 None:intergenic 25.0%
!! TGAAATTTTGTTAATGTCAG+GGG - chr2_3:1827664-1827683 None:intergenic 25.0%
! TAGGTTTATCTTTCAAAATG+TGG - chr2_3:1828099-1828118 None:intergenic 25.0%
! TCATTAAAGTAACTGATCTT+AGG - chr2_3:1828118-1828137 None:intergenic 25.0%
!! GGAATTTTTCTGTCTATAAT+GGG + chr2_3:1828178-1828197 Msa0270600:intron 25.0%
!! TTTCTTTTTGCAATTACCTA+TGG + chr2_3:1828245-1828264 Msa0270600:intron 25.0%
! TTTCCAAAATTCATATGAAG+TGG + chr2_3:1828301-1828320 Msa0270600:intron 25.0%
!! TATCCACTTCATATGAATTT+TGG - chr2_3:1828307-1828326 None:intergenic 25.0%
!! TTGGTGCAAATATAAGATTT+TGG + chr2_3:1828434-1828453 Msa0270600:intron 25.0%
!! TTGGTGCAAATATAAGATTT+TGG + chr2_3:1828434-1828453 Msa0270600:intron 25.0%
!! ACTTGTTGATCATAATCATT+GGG + chr2_3:1828551-1828570 Msa0270600:intron 25.0%
!!! TATAAATTTTAAAGTTCGGG+GGG + chr2_3:1828590-1828609 Msa0270600:intron 25.0%
! TAACAGAAAAATTTGACGAA+GGG + chr2_3:1828668-1828687 Msa0270600:intron 25.0%
!! GATTAACGTTGTACAATTTT+AGG + chr2_3:1828699-1828718 Msa0270600:intron 25.0%
!! TTAACGTTGTACAATTTTAG+GGG + chr2_3:1828701-1828720 Msa0270600:intron 25.0%
!!! TTGAAGTTTTATTAATGTCG+GGG + chr2_3:1828729-1828748 Msa0270600:intron 25.0%
!! CACATTTAGAATGAGTAAAT+AGG - chr2_3:1828794-1828813 None:intergenic 25.0%
!!! ATGATTTTAATATGTGCACT+TGG + chr2_3:1828854-1828873 Msa0270600:intron 25.0%
!!! AATTTTTGATTGAGCACTTT+TGG + chr2_3:1829045-1829064 Msa0270600:intron 25.0%
! TGTCAATCAAAAATTGTTTG+AGG - chr2_3:1829103-1829122 None:intergenic 25.0%
! TTAATATGGCTAAAAAACCT+TGG + chr2_3:1829535-1829554 Msa0270600:CDS 25.0%
TTAGGGTTTGAAGAGAAATT+AGG - chr2_3:1824370-1824389 None:intergenic 30.0%
!! ATTGAGTTGATGAAGAAAAG+GGG - chr2_3:1824529-1824548 None:intergenic 30.0%
AGCTCAATTGACAGTAAAAA+AGG - chr2_3:1824780-1824799 None:intergenic 30.0%
TCATGTTCTTAATCAAACGA+TGG + chr2_3:1824978-1824997 Msa0270600:intron 30.0%
TAAGATTCATGTGCAAACAT+GGG - chr2_3:1825390-1825409 None:intergenic 30.0%
TCATATGCAAAAGGATCAAA+AGG + chr2_3:1825428-1825447 Msa0270600:intron 30.0%
CATATGCAAAAGGATCAAAA+GGG + chr2_3:1825429-1825448 Msa0270600:intron 30.0%
! ATCTGAAATTAAGAGATCAC+GGG + chr2_3:1825489-1825508 Msa0270600:intron 30.0%
! GTATTTGAGATAGTTATGTC+AGG - chr2_3:1825642-1825661 None:intergenic 30.0%
AAGATAACTGGAAAGCAAAT+TGG - chr2_3:1825823-1825842 None:intergenic 30.0%
! CAAACTCATGTATTTCTGAA+TGG + chr2_3:1825856-1825875 Msa0270600:intron 30.0%
!!! CTGTGTTTTGTTTTCTTTAG+AGG + chr2_3:1826027-1826046 Msa0270600:intron 30.0%
!! CTTTTCTTTCAAGGCATTTA+TGG - chr2_3:1826056-1826075 None:intergenic 30.0%
CATAAATGCCTTGAAAGAAA+AGG + chr2_3:1826054-1826073 Msa0270600:CDS 30.0%
!! AGAAAAAGTACTTCAGTAGT+TGG - chr2_3:1826115-1826134 None:intergenic 30.0%
! CTTTTTCTTTGTAGCTATGA+AGG + chr2_3:1826127-1826146 Msa0270600:CDS 30.0%
! AGGTAATGAAACTGTTTCTT+CGG + chr2_3:1826245-1826264 Msa0270600:intron 30.0%
CAAAAAATGGAAACTAGGAT+GGG - chr2_3:1826420-1826439 None:intergenic 30.0%
ACAAAAAATGGAAACTAGGA+TGG - chr2_3:1826421-1826440 None:intergenic 30.0%
! ATTTCAGGTGTTGTAATTTC+AGG + chr2_3:1826442-1826461 Msa0270600:intron 30.0%
GATCTATCTTGAGCAATTAT+TGG - chr2_3:1826517-1826536 None:intergenic 30.0%
TTCTAAATAGACCTGACATT+TGG - chr2_3:1826617-1826636 None:intergenic 30.0%
! GTTTTTGTTGCAGAAATTTC+TGG + chr2_3:1826654-1826673 Msa0270600:intron 30.0%
GACATTTCTTAATTCATACG+GGG + chr2_3:1826695-1826714 Msa0270600:CDS 30.0%
ACATTTCTTAATTCATACGG+GGG + chr2_3:1826696-1826715 Msa0270600:CDS 30.0%
CCTTAAGAGATCAATAAACA+AGG - chr2_3:1826780-1826799 None:intergenic 30.0%
! CCTTGTTTATTGATCTCTTA+AGG + chr2_3:1826777-1826796 Msa0270600:intron 30.0%
ATGGAATATGCCAAACATAA+AGG - chr2_3:1826829-1826848 None:intergenic 30.0%
! AGAGTTTTTGCTGATATTCA+GGG - chr2_3:1826856-1826875 None:intergenic 30.0%
! AAGAGTTTTTGCTGATATTC+AGG - chr2_3:1826857-1826876 None:intergenic 30.0%
TTCATATCGGATTCAATCAT+GGG - chr2_3:1827196-1827215 None:intergenic 30.0%
AATGATTCAAACCTTCTTTG+TGG + chr2_3:1827255-1827274 Msa0270600:intron 30.0%
! TTAACCAACCTTTTCATGAT+GGG - chr2_3:1827544-1827563 None:intergenic 30.0%
! ATTAACCAACCTTTTCATGA+TGG - chr2_3:1827545-1827564 None:intergenic 30.0%
TTGACGAAACTTACAATTTC+GGG - chr2_3:1828758-1828777 None:intergenic 30.0%
! AAATTTTGTTAATGTCAGGG+GGG - chr2_3:1827662-1827681 None:intergenic 30.0%
! GAAATTTTGTTAATGTCAGG+GGG - chr2_3:1827663-1827682 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+GGG - chr2_3:1827694-1827713 None:intergenic 30.0%
TAACGGAAAAATTTGACAGA+GGG - chr2_3:1827726-1827745 None:intergenic 30.0%
! GATATCTGAATTTTTCGCAA+AGG + chr2_3:1827893-1827912 Msa0270600:intron 30.0%
! TTTTTCGCAAAGGATCAAAT+AGG + chr2_3:1827903-1827922 Msa0270600:intron 30.0%
!! TCATGTAATTAGCTTTAACC+TGG + chr2_3:1828045-1828064 Msa0270600:intron 30.0%
!! TTAAAGTTAAGCTTGCTACT+TGG + chr2_3:1828152-1828171 Msa0270600:intron 30.0%
! GGGAATTTTTCTGTCTATAA+TGG + chr2_3:1828177-1828196 Msa0270600:intron 30.0%
!! CTCATCAAGTTTGTTATTCA+TGG + chr2_3:1828211-1828230 Msa0270600:intron 30.0%
!!! CTGCTATTTTACTTCTTTGT+TGG + chr2_3:1828346-1828365 Msa0270600:intron 30.0%
! ACTCTAAAGATCATTGCTAT+TGG + chr2_3:1828415-1828434 Msa0270600:intron 30.0%
! TTTTGGACTAATAATTGGCT+TGG + chr2_3:1828451-1828470 Msa0270600:intron 30.0%
! TTTGGACTAATAATTGGCTT+GGG + chr2_3:1828452-1828471 Msa0270600:intron 30.0%
! CACTTGTTGATCATAATCAT+TGG + chr2_3:1828550-1828569 Msa0270600:intron 30.0%
CTTGTTGATCATAATCATTG+GGG + chr2_3:1828552-1828571 Msa0270600:intron 30.0%
CTAACAGAAAAATTTGACGA+AGG + chr2_3:1828667-1828686 Msa0270600:intron 30.0%
AACAGAAAAATTTGACGAAG+GGG + chr2_3:1828669-1828688 Msa0270600:intron 30.0%
! TAACGTTGTACAATTTTAGG+GGG + chr2_3:1828702-1828721 Msa0270600:intron 30.0%
!!! TGAAGTTTTATTAATGTCGG+GGG + chr2_3:1828730-1828749 Msa0270600:intron 30.0%
TGACGAAACTTACAATTTCA+AGG + chr2_3:1828759-1828778 Msa0270600:intron 30.0%
GACGAAACTTACAATTTCAA+GGG + chr2_3:1828760-1828779 Msa0270600:intron 30.0%
ACGAAACTTACAATTTCAAG+GGG + chr2_3:1828761-1828780 Msa0270600:intron 30.0%
AAAATCATACTTCATGAGAC+AGG - chr2_3:1828842-1828861 None:intergenic 30.0%
GCTCAATCAAAAATTGTTTG+AGG - chr2_3:1829040-1829059 None:intergenic 30.0%
!! GTTTTTGTTTGCTTTTCTGA+AGG - chr2_3:1829183-1829202 None:intergenic 30.0%
AGCTTAAACTGCATTTAAAG+AGG + chr2_3:1829301-1829320 Msa0270600:CDS 30.0%
GCTTAAACTGCATTTAAAGA+GGG + chr2_3:1829302-1829321 Msa0270600:CDS 30.0%
! TTTTCCTTGACATAGTACAT+TGG + chr2_3:1829784-1829803 Msa0270600:three_prime_UTR 30.0%
ATAACCAATGTACTATGTCA+AGG - chr2_3:1829791-1829810 None:intergenic 30.0%
! TGACATAGTACATTGGTTAT+CGG + chr2_3:1829791-1829810 Msa0270600:three_prime_UTR 30.0%
TTAGGAATTAGTTCCTATCG+AGG - chr2_3:1824352-1824371 None:intergenic 35.0%
TTGTTTGACCCATTTAACAG+CGG - chr2_3:1824498-1824517 None:intergenic 35.0%
CTGTTAAATGGGTCAAACAA+TGG + chr2_3:1824498-1824517 Msa0270600:CDS 35.0%
TCGCTGTAGAAATTCATTCA+AGG - chr2_3:1824588-1824607 None:intergenic 35.0%
TTGGTTTCTCGTTCATTTGT+TGG - chr2_3:1824615-1824634 None:intergenic 35.0%
GAAGTGTATGCTGTTAAGAT+GGG + chr2_3:1824742-1824761 Msa0270600:CDS 35.0%
AAAATGCAAATGGGCCAAAA+GGG - chr2_3:1825166-1825185 None:intergenic 35.0%
AAAAATGCAAATGGGCCAAA+AGG - chr2_3:1825167-1825186 None:intergenic 35.0%
TTCATATGCAAACGGATCAA+GGG - chr2_3:1825299-1825318 None:intergenic 35.0%
ATTCATATGCAAACGGATCA+AGG - chr2_3:1825300-1825319 None:intergenic 35.0%
GTTCTCAGTCTTCAAATCTA+TGG + chr2_3:1825357-1825376 Msa0270600:intron 35.0%
CTAAGATTCATGTGCAAACA+TGG - chr2_3:1825391-1825410 None:intergenic 35.0%
GTAATGCTTCATTTCTACGT+TGG + chr2_3:1825752-1825771 Msa0270600:intron 35.0%
AGTTGAATGTTAAGCAAGCT+TGG + chr2_3:1825937-1825956 Msa0270600:intron 35.0%
GGAAAGACATTTATAGATGC+TGG + chr2_3:1826154-1826173 Msa0270600:CDS 35.0%
! CAGTTTGTTTGCCATTATGA+GGG + chr2_3:1826214-1826233 Msa0270600:CDS 35.0%
! AGTTTGTTTGCCATTATGAG+GGG + chr2_3:1826215-1826234 Msa0270600:CDS 35.0%
AGTATAGGTGAGTAAAGACA+TGG - chr2_3:1826397-1826416 None:intergenic 35.0%
! TGTATGCTGGTTATGTTGTA+TGG + chr2_3:1826485-1826504 Msa0270600:intron 35.0%
TCTTATGTTTGCCAAATGTC+AGG + chr2_3:1826603-1826622 Msa0270600:intron 35.0%
AGATCAATAAACAAGGGCAA+TGG - chr2_3:1826773-1826792 None:intergenic 35.0%
GTATATGACTATTCAGCAGT+GGG + chr2_3:1826979-1826998 Msa0270600:intron 35.0%
TCATATCGGATTCAATCATG+GGG - chr2_3:1827195-1827214 None:intergenic 35.0%
CTTCATATCGGATTCAATCA+TGG - chr2_3:1827197-1827216 None:intergenic 35.0%
TCCGATATGAAGTTAGTTCA+TGG + chr2_3:1827205-1827224 Msa0270600:intron 35.0%
GCCATGAACTAACTTCATAT+CGG - chr2_3:1827209-1827228 None:intergenic 35.0%
ACAAGTCAAAACCTTGCATT+TGG + chr2_3:1827303-1827322 Msa0270600:intron 35.0%
!! TTTTGTTTGTGCCAATATGC+AGG + chr2_3:1827389-1827408 Msa0270600:intron 35.0%
TAGATCACAGTTACACAAAC+AGG - chr2_3:1827572-1827591 None:intergenic 35.0%
TGACGAAACTTACAATTTCG+GGG - chr2_3:1827635-1827654 None:intergenic 35.0%
TTAACGTTGTGCAATTTCAG+GGG - chr2_3:1827693-1827712 None:intergenic 35.0%
GATTAACGTTGTGCAATTTC+AGG - chr2_3:1827695-1827714 None:intergenic 35.0%
AACGGAAAAATTTGACAGAG+GGG - chr2_3:1827725-1827744 None:intergenic 35.0%
CTAACGGAAAAATTTGACAG+AGG - chr2_3:1827727-1827746 None:intergenic 35.0%
! CAAAACGTCATGTTGACTAA+CGG - chr2_3:1827743-1827762 None:intergenic 35.0%
! ATTTGAAAGGTATAACAGCC+AGG - chr2_3:1828066-1828085 None:intergenic 35.0%
TGGACTCCCAAATATTTGAA+AGG - chr2_3:1828079-1828098 None:intergenic 35.0%
TTTCGAAGCAACTTGATCAA+TGG + chr2_3:1828278-1828297 Msa0270600:intron 35.0%
!! ACTAATAATTGGCTTGGGAT+TGG + chr2_3:1828457-1828476 Msa0270600:intron 35.0%
CACATAAGTGCAAAACTTCA+GGG + chr2_3:1828620-1828639 Msa0270600:intron 35.0%
ACATAAGTGCAAAACTTCAG+GGG + chr2_3:1828621-1828640 Msa0270600:intron 35.0%
ACAGAAAAATTTGACGAAGG+GGG + chr2_3:1828670-1828689 Msa0270600:intron 35.0%
!! AACGTTGTACAATTTTAGGG+GGG + chr2_3:1828703-1828722 Msa0270600:intron 35.0%
!!! GAAGTTTTATTAATGTCGGG+GGG + chr2_3:1828731-1828750 Msa0270600:intron 35.0%
!!! AAGTTTTATTAATGTCGGGG+GGG + chr2_3:1828732-1828751 Msa0270600:intron 35.0%
CGAAACTTACAATTTCAAGG+GGG + chr2_3:1828762-1828781 Msa0270600:intron 35.0%
GTGTTCACAATCACAATAGA+TGG + chr2_3:1828811-1828830 Msa0270600:intron 35.0%
TACTTTATCGGCACATCTAT+TGG - chr2_3:1829150-1829169 None:intergenic 35.0%
!! TTTGTTTGCTTTTCTGAAGG+AGG - chr2_3:1829180-1829199 None:intergenic 35.0%
CTTCATAAGGACATGCATAT+GGG - chr2_3:1829251-1829270 None:intergenic 35.0%
CATATGCATGTCCTTATGAA+GGG + chr2_3:1829250-1829269 Msa0270600:CDS 35.0%
! TTGCTTCTGACTTTTACCAT+TGG - chr2_3:1829436-1829455 None:intergenic 35.0%
TAGCCATATTAAAAGTGGCA+GGG - chr2_3:1829527-1829546 None:intergenic 35.0%
TTAGCCATATTAAAAGTGGC+AGG - chr2_3:1829528-1829547 None:intergenic 35.0%
TCGTAAGTTTCTTCTTTCAC+TGG - chr2_3:1829561-1829580 None:intergenic 35.0%
! AAACAACGAAGATGATGATG+AGG + chr2_3:1829647-1829666 Msa0270600:CDS 35.0%
TGTTTGACCCATTTAACAGC+GGG - chr2_3:1824497-1824516 None:intergenic 40.0%
! GGAAGTGTATGCTGTTAAGA+TGG + chr2_3:1824741-1824760 Msa0270600:CDS 40.0%
ATGCTGTTAAGATGGGTAAC+AGG + chr2_3:1824749-1824768 Msa0270600:CDS 40.0%
! GCACCCATAATTTTCCCTTT+AGG + chr2_3:1824838-1824857 Msa0270600:intron 40.0%
CTACGGCAAAATTACACTTC+TGG + chr2_3:1825069-1825088 Msa0270600:intron 40.0%
!!! TGGTTTTTTCTCCTTCGTTC+CGG + chr2_3:1825215-1825234 Msa0270600:intron 40.0%
TCATATGCAAACGGATCAAG+GGG - chr2_3:1825298-1825317 None:intergenic 40.0%
TTTGAAGACTGAGAACTCAC+AGG - chr2_3:1825353-1825372 None:intergenic 40.0%
TCATTCATACATGCAGCGTT+TGG - chr2_3:1825525-1825544 None:intergenic 40.0%
AAGGTTGTTCTAGTACGACA+TGG - chr2_3:1825595-1825614 None:intergenic 40.0%
CTGTTCATGTGTGCTATGAA+AGG - chr2_3:1825614-1825633 None:intergenic 40.0%
TTCTAGTCTACCCTACTAAG+TGG + chr2_3:1825700-1825719 Msa0270600:intron 40.0%
TCTAGTCTACCCTACTAAGT+GGG + chr2_3:1825701-1825720 Msa0270600:intron 40.0%
! AAGCCTTATCCCACTTAGTA+GGG - chr2_3:1825713-1825732 None:intergenic 40.0%
AAGTACTTCAGTAGTTGGCT+CGG - chr2_3:1826110-1826129 None:intergenic 40.0%
TTATAGATGCTGGTGCTTTG+AGG + chr2_3:1826164-1826183 Msa0270600:CDS 40.0%
! GCAGTTTGTTTGCCATTATG+AGG + chr2_3:1826213-1826232 Msa0270600:CDS 40.0%
CAAGCACAGAAATGCATGTT+AGG + chr2_3:1826281-1826300 Msa0270600:intron 40.0%
AGTAACACACACATGTATGC+TGG + chr2_3:1826472-1826491 Msa0270600:intron 40.0%
! GATTTTGTGTGTCCTCATGA+AGG + chr2_3:1826724-1826743 Msa0270600:CDS 40.0%
TGCTGATATTCAGGGTATGA+TGG - chr2_3:1826848-1826867 None:intergenic 40.0%
GGTATATGACTATTCAGCAG+TGG + chr2_3:1826978-1826997 Msa0270600:intron 40.0%
ACTGTAAATCACCGTTTCCA+TGG + chr2_3:1827103-1827122 Msa0270600:intron 40.0%
CAGGTTAAAATCCAAGGAGA+AGG - chr2_3:1827415-1827434 None:intergenic 40.0%
!! TCTCCTTGGATTTTAACCTG+AGG + chr2_3:1827415-1827434 Msa0270600:CDS 40.0%
AGACCTCAGGTTAAAATCCA+AGG - chr2_3:1827421-1827440 None:intergenic 40.0%
CATTGCTTCCCATCATGAAA+AGG + chr2_3:1827533-1827552 Msa0270600:CDS 40.0%
ACGAAACTTACAATTTCGGG+GGG - chr2_3:1827633-1827652 None:intergenic 40.0%
GACGAAACTTACAATTTCGG+GGG - chr2_3:1827634-1827653 None:intergenic 40.0%
TAACGTTGTGCAATTTCAGG+GGG - chr2_3:1827692-1827711 None:intergenic 40.0%
ACGGAAAAATTTGACAGAGG+GGG - chr2_3:1827724-1827743 None:intergenic 40.0%
ACATAAGCGCAAAACTTCAG+GGG - chr2_3:1827774-1827793 None:intergenic 40.0%
CACATAAGCGCAAAACTTCA+GGG - chr2_3:1827775-1827794 None:intergenic 40.0%
!! AGTTAAGCTTGCTACTTGGA+AGG + chr2_3:1828156-1828175 Msa0270600:intron 40.0%
!! GTTAAGCTTGCTACTTGGAA+GGG + chr2_3:1828157-1828176 Msa0270600:intron 40.0%
AGTTGCTTCGAAAGATGTAC+AGG - chr2_3:1828271-1828290 None:intergenic 40.0%
ACAAGTGAGCAACAAATGTG+AGG - chr2_3:1828537-1828556 None:intergenic 40.0%
GCACATAAGTGCAAAACTTC+AGG + chr2_3:1828619-1828638 Msa0270600:intron 40.0%
CATAAGTGCAAAACTTCAGG+GGG + chr2_3:1828622-1828641 Msa0270600:intron 40.0%
CGTCAAATGAAACCTCTAGA+TGG - chr2_3:1828883-1828902 None:intergenic 40.0%
! ATGATGCATGACTGCACTTT+TGG + chr2_3:1828982-1829001 Msa0270600:intron 40.0%
GGAGGAGTTGCATACTTTAT+CGG - chr2_3:1829162-1829181 None:intergenic 40.0%
ACAAAAACTGCTAGACCTTC+TGG + chr2_3:1829195-1829214 Msa0270600:CDS 40.0%
CCTTCATAAGGACATGCATA+TGG - chr2_3:1829252-1829271 None:intergenic 40.0%
CCATATGCATGTCCTTATGA+AGG + chr2_3:1829249-1829268 Msa0270600:CDS 40.0%
! TCCTTATGAAGGGTGTGAAA+AGG + chr2_3:1829260-1829279 Msa0270600:CDS 40.0%
TGAAAATGCTATGCATGCTC+TGG + chr2_3:1829347-1829366 Msa0270600:CDS 40.0%
! TATGGTGGAAAACGTTCCAA+TGG + chr2_3:1829417-1829436 Msa0270600:CDS 40.0%
GTAAAAGTCAGAAGCAAAGC+AGG + chr2_3:1829439-1829458 Msa0270600:CDS 40.0%
!!! GGCATTTTCAAGTTTGGCTT+GGG - chr2_3:1829465-1829484 None:intergenic 40.0%
!!! AGGCATTTTCAAGTTTGGCT+TGG - chr2_3:1829466-1829485 None:intergenic 40.0%
!!! GAAGGAGGCATTTTCAAGTT+TGG - chr2_3:1829471-1829490 None:intergenic 40.0%
TTACGCTGAGCAACTTTAGA+AGG - chr2_3:1829489-1829508 None:intergenic 40.0%
! TCTAAAGTTGCTCAGCGTAA+AGG + chr2_3:1829489-1829508 Msa0270600:CDS 40.0%
CTAAAGTTGCTCAGCGTAAA+GGG + chr2_3:1829490-1829509 Msa0270600:CDS 40.0%
ATATTAAAAGTGGCAGGGGT+TGG - chr2_3:1829522-1829541 None:intergenic 40.0%
!!! AACCCCTGCCACTTTTAATA+TGG + chr2_3:1829521-1829540 Msa0270600:CDS 40.0%
AGCCATATTAAAAGTGGCAG+GGG - chr2_3:1829526-1829545 None:intergenic 40.0%
GATCGTGACAATGTTGAAGA+TGG + chr2_3:1829609-1829628 Msa0270600:CDS 40.0%
GTGACAATGTTGAAGATGGT+TGG + chr2_3:1829613-1829632 Msa0270600:CDS 40.0%
GGAAGAATGAATGATACCGT+AGG + chr2_3:1829812-1829831 Msa0270600:three_prime_UTR 40.0%
! ATATTTTCTGCTGCGAATCG+CGG + chr2_3:1829878-1829897 Msa0270600:three_prime_UTR 40.0%
TTCCTATCGAGGATGAAGCT+TGG - chr2_3:1824341-1824360 None:intergenic 45.0%
! TCCCGTCAATTTAGCCCTTT+TGG + chr2_3:1825149-1825168 Msa0270600:intron 45.0%
GCCAAAAGGGCTAAATTGAC+GGG - chr2_3:1825153-1825172 None:intergenic 45.0%
GGCCAAAAGGGCTAAATTGA+CGG - chr2_3:1825154-1825173 None:intergenic 45.0%
! TTTGAGGTCCTGGTTCAAAC+CGG - chr2_3:1825237-1825256 None:intergenic 45.0%
ATCCTGCTGCTCAAACAAGA+TGG + chr2_3:1825263-1825282 Msa0270600:intron 45.0%
TCCTGCTGCTCAAACAAGAT+GGG + chr2_3:1825264-1825283 Msa0270600:intron 45.0%
CATATGCAAACGGATCAAGG+GGG - chr2_3:1825297-1825316 None:intergenic 45.0%
TCATGTGCAAACATGGGTGA+AGG - chr2_3:1825384-1825403 None:intergenic 45.0%
CTACCCTACTAAGTGGGATA+AGG + chr2_3:1825707-1825726 Msa0270600:intron 45.0%
! CAAGCCTTATCCCACTTAGT+AGG - chr2_3:1825714-1825733 None:intergenic 45.0%
CTACTAAGTGGGATAAGGCT+TGG + chr2_3:1825712-1825731 Msa0270600:intron 45.0%
! ATAAGGCTTGGTTGTGTTGG+TGG + chr2_3:1825724-1825743 Msa0270600:intron 45.0%
! AGTACTTCAGTAGTTGGCTC+GGG - chr2_3:1826109-1826128 None:intergenic 45.0%
CTTTGTAGCTATGAAGGCTG+TGG + chr2_3:1826133-1826152 Msa0270600:CDS 45.0%
AAACAAACTGCCTCTCTCCA+TGG - chr2_3:1826204-1826223 None:intergenic 45.0%
! GGAAACTAGGATGGGAGTAT+AGG - chr2_3:1826412-1826431 None:intergenic 45.0%
TCTTAATTCATACGGGGGAG+AGG + chr2_3:1826701-1826720 Msa0270600:CDS 45.0%
CTTAATTCATACGGGGGAGA+GGG + chr2_3:1826702-1826721 Msa0270600:CDS 45.0%
ACCGTTTCCATGGTCACTAT+GGG + chr2_3:1827113-1827132 Msa0270600:intron 45.0%
ACCCATAGTGACCATGGAAA+CGG - chr2_3:1827117-1827136 None:intergenic 45.0%
TTCGAAACCCATAGTGACCA+TGG - chr2_3:1827123-1827142 None:intergenic 45.0%
ATATGCCCATACCCAGATTG+TGG + chr2_3:1827474-1827493 Msa0270600:CDS 45.0%
TATGCCCATACCCAGATTGT+GGG + chr2_3:1827475-1827494 Msa0270600:CDS 45.0%
TCTTCCCACAATCTGGGTAT+GGG - chr2_3:1827482-1827501 None:intergenic 45.0%
CGTATCTCTTCCCACAATCT+GGG - chr2_3:1827488-1827507 None:intergenic 45.0%
GCTTCCCATCATGAAAAGGT+TGG + chr2_3:1827537-1827556 Msa0270600:intron 45.0%
CGAAACTTACAATTTCGGGG+GGG - chr2_3:1827632-1827651 None:intergenic 45.0%
AACGTTGTGCAATTTCAGGG+GGG - chr2_3:1827691-1827710 None:intergenic 45.0%
ATAAGCGCAAAACTTCAGGG+GGG - chr2_3:1827772-1827791 None:intergenic 45.0%
CATAAGCGCAAAACTTCAGG+GGG - chr2_3:1827773-1827792 None:intergenic 45.0%
GCACATAAGCGCAAAACTTC+AGG - chr2_3:1827776-1827795 None:intergenic 45.0%
! CAAGCATTGCACTTCAGACA+GGG - chr2_3:1828024-1828043 None:intergenic 45.0%
TCGAAAGATGTACAGGCCAT+AGG - chr2_3:1828264-1828283 None:intergenic 45.0%
TGCACTTGGTTTCCATCTAG+AGG + chr2_3:1828868-1828887 Msa0270600:intron 45.0%
TATTGGTGTACTCTGCAGTG+AGG - chr2_3:1829133-1829152 None:intergenic 45.0%
! GCCTTTTCACACCCTTCATA+AGG - chr2_3:1829264-1829283 None:intergenic 45.0%
!! CATTTAAAGAGGGAGCATCC+TGG + chr2_3:1829312-1829331 Msa0270600:CDS 45.0%
GCAAGTGATCACGATGCTTA+TGG + chr2_3:1829399-1829418 Msa0270600:CDS 45.0%
AGTGATCACGATGCTTATGG+TGG + chr2_3:1829402-1829421 Msa0270600:CDS 45.0%
GTTTCTTCTTTCACTGGCCA+AGG - chr2_3:1829555-1829574 None:intergenic 45.0%
TGAAGACAGCGAAGAAACTG+AGG + chr2_3:1829581-1829600 Msa0270600:CDS 45.0%
GAAGATGGTTGGAGATATGC+TGG + chr2_3:1829624-1829643 Msa0270600:CDS 45.0%
!! ATATAAAGATAAAAAAAATT+GGG - chr2_3:1827867-1827886 None:intergenic 5.0%
!!! AATATATAAATTTTAAAGTT+CGG + chr2_3:1828586-1828605 Msa0270600:intron 5.0%
CAAGGCTCCCGCTGTTAAAT+GGG + chr2_3:1824487-1824506 Msa0270600:CDS 50.0%
AAGACGTTGTTGCCACTGGT+GGG + chr2_3:1824720-1824739 Msa0270600:CDS 50.0%
CTTGTTTGAGCAGCAGGATG+AGG - chr2_3:1825262-1825281 None:intergenic 50.0%
! TCCCATCTTGTTTGAGCAGC+AGG - chr2_3:1825268-1825287 None:intergenic 50.0%
! GGGATAAGGCTTGGTTGTGT+TGG + chr2_3:1825721-1825740 Msa0270600:intron 50.0%
!! AGGAAGCATTCCCACATCCA+TGG + chr2_3:1826184-1826203 Msa0270600:CDS 50.0%
ATTCCCACATCCATGGAGAG+AGG + chr2_3:1826191-1826210 Msa0270600:CDS 50.0%
GTTTGCCATTATGAGGGGTG+TGG + chr2_3:1826220-1826239 Msa0270600:CDS 50.0%
CCTTTCCACACCCCTCATAA+TGG - chr2_3:1826228-1826247 None:intergenic 50.0%
! CCATTATGAGGGGTGTGGAA+AGG + chr2_3:1826225-1826244 Msa0270600:CDS 50.0%
TCCTCATGAAGGCTGTGGTA+AGG + chr2_3:1826735-1826754 Msa0270600:CDS 50.0%
ACCTTACCACAGCCTTCATG+AGG - chr2_3:1826739-1826758 None:intergenic 50.0%
!! GCTCTAAAGCTTCAGCAGCA+AGG + chr2_3:1826949-1826968 Msa0270600:intron 50.0%
GCTTCAGCAGCAAGGTAATG+AGG + chr2_3:1826957-1826976 Msa0270600:intron 50.0%
CACCGTTTCCATGGTCACTA+TGG + chr2_3:1827112-1827131 Msa0270600:intron 50.0%
CAAGGAGAAGGCCTGCATAT+TGG - chr2_3:1827403-1827422 None:intergenic 50.0%
CAATATGCAGGCCTTCTCCT+TGG + chr2_3:1827401-1827420 Msa0270600:intron 50.0%
GTGTCTTCATGTGAGACCTC+AGG - chr2_3:1827434-1827453 None:intergenic 50.0%
CTCTTCCCACAATCTGGGTA+TGG - chr2_3:1827483-1827502 None:intergenic 50.0%
GCGTATCTCTTCCCACAATC+TGG - chr2_3:1827489-1827508 None:intergenic 50.0%
! GCAAGCATTGCACTTCAGAC+AGG - chr2_3:1828025-1828044 None:intergenic 50.0%
!! AGACCTTCTGGAGCGACATA+CGG + chr2_3:1829207-1829226 Msa0270600:CDS 50.0%
!! TTCTGGAGCGACATACGGTT+CGG + chr2_3:1829212-1829231 Msa0270600:CDS 50.0%
ACATGCATATGGGCGATCAG+AGG - chr2_3:1829241-1829260 None:intergenic 50.0%
! CGCTGAGCAACTTTAGAAGG+AGG - chr2_3:1829486-1829505 None:intergenic 50.0%
AGACAGCGAAGAAACTGAGG+AGG + chr2_3:1829584-1829603 Msa0270600:CDS 50.0%
AATCGCGGTAGTTTCTGACG+CGG + chr2_3:1829893-1829912 Msa0270600:three_prime_UTR 50.0%
GGCGTCTCTCAAAGAGAGAG+TGG - chr2_3:1824454-1824473 None:intergenic 55.0%
GAGCCTTGGACGTGAGAAAG+GGG - chr2_3:1824475-1824494 None:intergenic 55.0%
GGAGCCTTGGACGTGAGAAA+GGG - chr2_3:1824476-1824495 None:intergenic 55.0%
CCATTTAACAGCGGGAGCCT+TGG - chr2_3:1824489-1824508 None:intergenic 55.0%
CCAAGGCTCCCGCTGTTAAA+TGG + chr2_3:1824486-1824505 Msa0270600:CDS 55.0%
CCAGTGGCAACAACGTCTTG+TGG - chr2_3:1824719-1824738 None:intergenic 55.0%
CCACAAGACGTTGTTGCCAC+TGG + chr2_3:1824716-1824735 Msa0270600:CDS 55.0%
CAAGACGTTGTTGCCACTGG+TGG + chr2_3:1824719-1824738 Msa0270600:CDS 55.0%
CAGCATACACTTCCCACCAG+TGG - chr2_3:1824735-1824754 None:intergenic 55.0%
CCTGGTTCAAACCGGAACGA+AGG - chr2_3:1825229-1825248 None:intergenic 55.0%
! CCTTCGTTCCGGTTTGAACC+AGG + chr2_3:1825226-1825245 Msa0270600:intron 55.0%
! GGATGAGGAGTTTGAGGTCC+TGG - chr2_3:1825247-1825266 None:intergenic 55.0%
GCAGCAGGATGAGGAGTTTG+AGG - chr2_3:1825253-1825272 None:intergenic 55.0%
!! GGTTCTGGCTCAGGAGCTAA+TGG - chr2_3:1826088-1826107 None:intergenic 55.0%
!! TCAGTAGTTGGCTCGGGTTC+TGG - chr2_3:1826103-1826122 None:intergenic 55.0%
CTGCCTCTCTCCATGGATGT+GGG - chr2_3:1826197-1826216 None:intergenic 55.0%
ACTGCCTCTCTCCATGGATG+TGG - chr2_3:1826198-1826217 None:intergenic 55.0%
GTGTGTCCTCATGAAGGCTG+TGG + chr2_3:1826730-1826749 Msa0270600:CDS 55.0%
GAACCGTATGTCGCTCCAGA+AGG - chr2_3:1829213-1829232 None:intergenic 55.0%
CAGCGAAGAAACTGAGGAGG+AGG + chr2_3:1829587-1829606 Msa0270600:CDS 55.0%
ACGCCCCTTTCTCACGTCCA+AGG + chr2_3:1824469-1824488 Msa0270600:CDS 60.0%
GGGAGCCTTGGACGTGAGAA+AGG - chr2_3:1824477-1824496 None:intergenic 60.0%
!! GTTGGCTCGGGTTCTGGCTC+AGG - chr2_3:1826097-1826116 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1824338 1829966 1824338 ID=Msa0270600;Name=Msa0270600
chr2_3 mRNA 1824338 1829966 1824338 ID=Msa0270600-mRNA-1;Parent=Msa0270600;Name=Msa0270600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|1|1|6|277|375
chr2_3 exon 1824338 1824519 1824338 ID=Msa0270600-mRNA-1:exon:849;Parent=Msa0270600-mRNA-1
chr2_3 exon 1824712 1824770 1824712 ID=Msa0270600-mRNA-1:exon:850;Parent=Msa0270600-mRNA-1
chr2_3 exon 1826047 1826246 1826047 ID=Msa0270600-mRNA-1:exon:851;Parent=Msa0270600-mRNA-1
chr2_3 exon 1826667 1826756 1826667 ID=Msa0270600-mRNA-1:exon:852;Parent=Msa0270600-mRNA-1
chr2_3 exon 1827411 1827554 1827411 ID=Msa0270600-mRNA-1:exon:853;Parent=Msa0270600-mRNA-1
chr2_3 exon 1829141 1829966 1829141 ID=Msa0270600-mRNA-1:exon:854;Parent=Msa0270600-mRNA-1
chr2_3 five_prime_UTR 1824338 1824433 1824338 ID=Msa0270600-mRNA-1:five_prime_utr;Parent=Msa0270600-mRNA-1
chr2_3 CDS 1824434 1824519 1824434 ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3 CDS 1824712 1824770 1824712 ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3 CDS 1826047 1826246 1826047 ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3 CDS 1826667 1826756 1826667 ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3 CDS 1827411 1827554 1827411 ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3 CDS 1829141 1829689 1829141 ID=Msa0270600-mRNA-1:cds;Parent=Msa0270600-mRNA-1
chr2_3 three_prime_UTR 1829690 1829966 1829690 ID=Msa0270600-mRNA-1:three_prime_utr;Parent=Msa0270600-mRNA-1
Gene Sequence

>Msa0270600

ATGGAGACTCACTACAACCACTCTCTCTTTGAGAGACGCCCCTTTCTCACGTCCAAGGCTCCCGCTGTTAAATGGGTCAAACAATGGGTTCCACAAGACGTTGTTGCCACTGGTGGGAAGTGTATGCTGTTAAGATGGGTAACAGAGGATACCATAAATGCCTTGAAAGAAAAGGAAAAAGAACCATTAGCTCCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAGTTTGTTTGCCATTATGAGGGGTGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACGGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCAGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCCCATCATGAAAAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAAACTGCTAGACCTTCTGGAGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTAAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCTGCCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA

Protein sequence

>Msa0270600

METHYNHSLFERRPFLTSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTINALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED*