Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189330 | XP_024642129.1 | 94.883 | 684 | 33 | 1 | 1 | 682 | 1 | 684 | 0.0 | 1340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189330 | sp|Q9SWG3|FAR1_ARATH | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 3.58e-121 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189330 | A0A2K3N9Z9 | 76.221 | 778 | 153 | 2 | 1 | 776 | 1 | 748 | 0.0 | 1234 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0189330 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189330 | Msa1387040 | 0.901021 | 4.079687e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189330 | MtrunA17_Chr2g0296781 | 72.879 | 719 | 185 | 4 | 1 | 713 | 1 | 715 | 0.0 | 1093 |
| Msa0189330 | MtrunA17_Chr6g0477261 | 70.043 | 701 | 166 | 6 | 112 | 809 | 1 | 660 | 0.0 | 985 |
| Msa0189330 | MtrunA17_Chr1g0196541 | 67.575 | 697 | 220 | 3 | 1 | 695 | 1 | 693 | 0.0 | 954 |
| Msa0189330 | MtrunA17_Chr5g0441581 | 48.087 | 601 | 294 | 7 | 1 | 596 | 36 | 623 | 0.0 | 574 |
| Msa0189330 | MtrunA17_Chr1g0207551 | 37.433 | 561 | 341 | 5 | 1 | 558 | 38 | 591 | 2.83e-123 | 390 |
| Msa0189330 | MtrunA17_Chr2g0291581 | 37.077 | 561 | 336 | 6 | 1 | 557 | 75 | 622 | 4.41e-121 | 380 |
| Msa0189330 | MtrunA17_Chr5g0448761 | 34.436 | 665 | 385 | 15 | 1 | 647 | 64 | 695 | 9.13e-118 | 374 |
| Msa0189330 | MtrunA17_Chr2g0329031 | 35.548 | 557 | 335 | 8 | 1 | 551 | 18 | 556 | 1.24e-116 | 370 |
| Msa0189330 | MtrunA17_Chr3g0080351 | 35.945 | 587 | 321 | 9 | 1 | 569 | 80 | 629 | 4.97e-114 | 366 |
| Msa0189330 | MtrunA17_Chr1g0202341 | 35.739 | 568 | 342 | 10 | 1 | 557 | 55 | 610 | 1.17e-109 | 350 |
| Msa0189330 | MtrunA17_Chr2g0291591 | 37.744 | 461 | 283 | 2 | 12 | 470 | 79 | 537 | 2.15e-100 | 322 |
| Msa0189330 | MtrunA17_Chr6g0476441 | 52.648 | 321 | 85 | 5 | 497 | 783 | 2 | 289 | 1.30e-98 | 308 |
| Msa0189330 | MtrunA17_Chr5g0440451 | 33.278 | 598 | 335 | 14 | 1 | 565 | 47 | 613 | 1.64e-92 | 311 |
| Msa0189330 | MtrunA17_Chr5g0448511 | 35.149 | 404 | 254 | 4 | 154 | 556 | 1 | 397 | 5.04e-87 | 286 |
| Msa0189330 | MtrunA17_Chr3g0118611 | 38.010 | 392 | 234 | 5 | 166 | 556 | 118 | 501 | 5.95e-85 | 286 |
| Msa0189330 | MtrunA17_Chr2g0287651 | 29.194 | 620 | 419 | 11 | 1 | 610 | 79 | 688 | 5.02e-80 | 275 |
| Msa0189330 | MtrunA17_Chr8g0363841 | 30.769 | 559 | 376 | 6 | 4 | 556 | 24 | 577 | 3.63e-79 | 268 |
| Msa0189330 | MtrunA17_Chr1g0198761 | 29.247 | 677 | 427 | 19 | 2 | 650 | 52 | 704 | 8.55e-75 | 258 |
| Msa0189330 | MtrunA17_Chr2g0324011 | 27.797 | 572 | 380 | 12 | 1 | 556 | 14 | 568 | 1.52e-72 | 248 |
| Msa0189330 | MtrunA17_Chr2g0287061 | 31.295 | 556 | 333 | 15 | 3 | 554 | 189 | 699 | 2.47e-67 | 239 |
| Msa0189330 | MtrunA17_Chr1g0203051 | 29.050 | 537 | 358 | 12 | 11 | 537 | 93 | 616 | 1.83e-66 | 233 |
| Msa0189330 | MtrunA17_Chr2g0276841 | 29.027 | 565 | 355 | 15 | 12 | 553 | 85 | 626 | 1.58e-65 | 232 |
| Msa0189330 | MtrunA17_Chr3g0082121 | 30.623 | 578 | 345 | 20 | 1 | 556 | 47 | 590 | 3.23e-63 | 225 |
| Msa0189330 | MtrunA17_Chr6g0458391 | 27.496 | 571 | 365 | 14 | 1 | 556 | 229 | 765 | 1.54e-61 | 222 |
| Msa0189330 | MtrunA17_Chr1g0203721 | 26.950 | 564 | 393 | 8 | 3 | 556 | 69 | 623 | 4.13e-60 | 219 |
| Msa0189330 | MtrunA17_Chr2g0294841 | 26.667 | 570 | 382 | 11 | 3 | 552 | 51 | 604 | 7.58e-55 | 202 |
| Msa0189330 | MtrunA17_Chr5g0431001 | 30.140 | 428 | 257 | 10 | 2 | 400 | 66 | 480 | 2.40e-53 | 193 |
| Msa0189330 | MtrunA17_Chr2g0290391 | 25.216 | 579 | 386 | 18 | 1 | 554 | 55 | 611 | 8.22e-45 | 172 |
| Msa0189330 | MtrunA17_Chr1g0164591 | 33.231 | 325 | 185 | 11 | 74 | 384 | 2 | 308 | 2.23e-44 | 163 |
| Msa0189330 | MtrunA17_Chr7g0258861 | 31.159 | 276 | 183 | 4 | 1 | 269 | 14 | 289 | 4.25e-39 | 147 |
| Msa0189330 | MtrunA17_Chr6g0476431 | 65.116 | 86 | 30 | 0 | 1 | 86 | 1 | 86 | 6.97e-32 | 119 |
| Msa0189330 | MtrunA17_Chr6g0451441 | 31.500 | 200 | 121 | 6 | 1 | 189 | 91 | 285 | 3.26e-18 | 88.6 |
| Msa0189330 | MtrunA17_Chr1g0172041 | 37.500 | 96 | 59 | 1 | 468 | 563 | 1 | 95 | 1.08e-16 | 76.6 |
| Msa0189330 | MtrunA17_Chr2g0308841 | 28.372 | 215 | 145 | 6 | 341 | 553 | 17 | 224 | 5.50e-16 | 79.0 |
| Msa0189330 | MtrunA17_Chr3g0077731 | 44.444 | 108 | 58 | 2 | 607 | 713 | 1 | 107 | 2.17e-13 | 67.4 |
| Msa0189330 | MtrunA17_Chr1g0149131 | 30.000 | 110 | 76 | 1 | 271 | 379 | 1 | 110 | 8.60e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189330 | AT4G15090.1 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 3.64e-122 | 387 |
| Msa0189330 | AT4G15090.5 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 3.64e-122 | 387 |
| Msa0189330 | AT4G15090.3 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 3.64e-122 | 387 |
| Msa0189330 | AT4G15090.2 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 3.64e-122 | 387 |
| Msa0189330 | AT4G15090.4 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 3.64e-122 | 387 |
| Msa0189330 | AT1G76320.3 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 7.94e-117 | 369 |
| Msa0189330 | AT1G76320.1 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 1.38e-116 | 370 |
| Msa0189330 | AT1G76320.4 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 1.38e-116 | 370 |
| Msa0189330 | AT1G76320.2 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 1.80e-116 | 370 |
| Msa0189330 | AT4G38180.1 | 34.513 | 565 | 354 | 8 | 1 | 556 | 77 | 634 | 6.91e-114 | 365 |
| Msa0189330 | AT3G22170.2 | 34.662 | 577 | 330 | 7 | 1 | 559 | 74 | 621 | 1.83e-113 | 365 |
| Msa0189330 | AT3G22170.1 | 34.662 | 577 | 330 | 7 | 1 | 559 | 74 | 621 | 1.83e-113 | 365 |
| Msa0189330 | AT1G52520.1 | 34.542 | 579 | 357 | 11 | 1 | 572 | 89 | 652 | 8.45e-105 | 338 |
| Msa0189330 | AT1G80010.1 | 34.211 | 570 | 356 | 11 | 1 | 557 | 99 | 662 | 3.04e-97 | 319 |
| Msa0189330 | AT4G19990.5 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 1.34e-91 | 304 |
| Msa0189330 | AT4G19990.3 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 1.37e-91 | 304 |
| Msa0189330 | AT4G19990.4 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 1.37e-91 | 304 |
| Msa0189330 | AT4G19990.7 | 32.776 | 598 | 341 | 10 | 3 | 580 | 41 | 597 | 1.52e-91 | 305 |
| Msa0189330 | AT4G19990.6 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 1.84e-91 | 305 |
| Msa0189330 | AT4G19990.2 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 1.84e-91 | 305 |
| Msa0189330 | AT4G19990.1 | 33.451 | 565 | 321 | 9 | 19 | 580 | 14 | 526 | 3.37e-91 | 302 |
| Msa0189330 | AT2G32250.8 | 32.554 | 556 | 325 | 8 | 1 | 553 | 1 | 509 | 8.71e-89 | 297 |
| Msa0189330 | AT2G32250.7 | 32.554 | 556 | 325 | 8 | 1 | 553 | 1 | 509 | 8.80e-89 | 297 |
| Msa0189330 | AT2G32250.5 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 9.84e-89 | 297 |
| Msa0189330 | AT2G32250.2 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 2.99e-88 | 296 |
| Msa0189330 | AT2G32250.4 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 2.99e-88 | 296 |
| Msa0189330 | AT2G32250.6 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 3.44e-88 | 296 |
| Msa0189330 | AT2G32250.1 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 3.44e-88 | 296 |
| Msa0189330 | AT2G32250.3 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 3.44e-88 | 296 |
| Msa0189330 | AT2G27110.2 | 31.720 | 558 | 348 | 8 | 1 | 556 | 53 | 579 | 8.25e-86 | 291 |
| Msa0189330 | AT2G27110.1 | 31.720 | 558 | 348 | 8 | 1 | 556 | 53 | 579 | 8.25e-86 | 291 |
| Msa0189330 | AT2G27110.3 | 34.325 | 437 | 270 | 5 | 121 | 556 | 14 | 434 | 3.68e-82 | 278 |
| Msa0189330 | AT4G38170.1 | 33.418 | 395 | 251 | 6 | 168 | 560 | 19 | 403 | 1.47e-75 | 256 |
| Msa0189330 | AT5G18960.2 | 30.125 | 561 | 336 | 15 | 1 | 554 | 215 | 726 | 1.36e-69 | 245 |
| Msa0189330 | AT5G18960.1 | 30.125 | 561 | 336 | 15 | 1 | 554 | 215 | 726 | 1.36e-69 | 245 |
| Msa0189330 | AT3G06250.2 | 30.851 | 564 | 325 | 17 | 1 | 554 | 194 | 702 | 1.44e-69 | 244 |
| Msa0189330 | AT3G06250.1 | 30.851 | 564 | 325 | 17 | 1 | 554 | 194 | 702 | 1.44e-69 | 244 |
| Msa0189330 | AT3G06250.3 | 30.851 | 564 | 325 | 17 | 1 | 554 | 194 | 702 | 1.44e-69 | 244 |
| Msa0189330 | AT1G10240.2 | 28.850 | 565 | 356 | 15 | 12 | 553 | 63 | 604 | 2.16e-61 | 220 |
| Msa0189330 | AT1G10240.1 | 28.850 | 565 | 356 | 15 | 12 | 553 | 63 | 604 | 2.16e-61 | 220 |
| Msa0189330 | AT5G28530.3 | 25.829 | 573 | 386 | 18 | 3 | 554 | 61 | 615 | 4.37e-44 | 170 |
| Msa0189330 | AT5G28530.2 | 25.829 | 573 | 386 | 18 | 3 | 554 | 61 | 615 | 4.37e-44 | 170 |
| Msa0189330 | AT5G28530.1 | 25.997 | 577 | 384 | 19 | 3 | 554 | 61 | 619 | 4.76e-44 | 170 |
| Msa0189330 | AT5G28530.5 | 24.648 | 568 | 336 | 21 | 3 | 554 | 61 | 552 | 6.67e-28 | 120 |
| Msa0189330 | AT5G28530.4 | 24.825 | 572 | 334 | 22 | 3 | 554 | 61 | 556 | 1.20e-27 | 119 |
Find 120 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTATTTGAGTTTAA+AGG | 0.175567 | 2_1:-4741752 | Msa0189330:CDS |
| ATTGCTTGTGTAAGTCATTT+TGG | 0.210894 | 2_1:-4741992 | Msa0189330:CDS |
| TCACGGTCAATCTGTGTTAT+TGG | 0.210970 | 2_1:-4742578 | Msa0189330:CDS |
| CACCATCTATGACGGGCTTT+TGG | 0.212782 | 2_1:+4742412 | None:intergenic |
| CTTATGGCATTTAATGAAAA+AGG | 0.217940 | 2_1:-4742389 | Msa0189330:CDS |
| GCCGTTTAAGAAATGTATTC+TGG | 0.225017 | 2_1:-4742717 | Msa0189330:CDS |
| TATTTCATTTGAGAATAATT+TGG | 0.236123 | 2_1:+4740490 | None:intergenic |
| TTAACTTCTTCTATGATAAT+AGG | 0.259140 | 2_1:+4741446 | None:intergenic |
| CAATACTTCATTTGAAGAAT+TGG | 0.263521 | 2_1:-4741888 | Msa0189330:CDS |
| TCAGCAAAATGTTCTTGATT+TGG | 0.266598 | 2_1:+4740757 | None:intergenic |
| AAGGAAAGCAGGGCTGATTT+TGG | 0.269315 | 2_1:-4742031 | Msa0189330:CDS |
| TTGGGCTAAGGCCATGATTA+TGG | 0.275986 | 2_1:+4743031 | None:intergenic |
| GCACTGTTATGTTCTTCATT+TGG | 0.292368 | 2_1:+4740938 | None:intergenic |
| AAGCACCGAAGAGGAGTTAT+TGG | 0.292941 | 2_1:-4741525 | Msa0189330:CDS |
| TGTAGAAGCAACTTCATAAA+AGG | 0.295071 | 2_1:+4741553 | None:intergenic |
| AAATCAAGCGTCTAGAATTC+TGG | 0.299260 | 2_1:-4741414 | Msa0189330:CDS |
| CTTTAGATGTAACAAGAATA+TGG | 0.300326 | 2_1:-4742995 | Msa0189330:CDS |
| CTAAAGTACCGTGCCTTGTT+TGG | 0.309171 | 2_1:+4743012 | None:intergenic |
| TGTATGTGAGGGACGTGTTT+TGG | 0.313235 | 2_1:-4742180 | Msa0189330:CDS |
| ATATGGGGTCTCACATAAAA+AGG | 0.316365 | 2_1:-4742978 | Msa0189330:CDS |
| TACATCTTGAGCAGTGAAAA+TGG | 0.320675 | 2_1:-4740989 | Msa0189330:CDS |
| CCTGTCATCTTGTGTCTCTA+TGG | 0.351652 | 2_1:+4740299 | None:intergenic |
| TCAGGATAAGGCAATGAAAA+AGG | 0.353873 | 2_1:-4742452 | Msa0189330:CDS |
| TGTTCTTCATTTGGATCAAA+TGG | 0.354418 | 2_1:+4740947 | None:intergenic |
| CACGGTCAATCTGTGTTATT+GGG | 0.357694 | 2_1:-4742577 | Msa0189330:CDS |
| CTTATCCTGATCAGTAATAA+TGG | 0.365698 | 2_1:+4742465 | None:intergenic |
| TATGCTCGACGTATGGGTTT+CGG | 0.385909 | 2_1:-4743252 | Msa0189330:CDS |
| CCCAGAATACATTTCTTAAA+CGG | 0.386877 | 2_1:+4742716 | None:intergenic |
| GTTATAAAGAAGAAGATTGC+AGG | 0.390821 | 2_1:-4741326 | Msa0189330:CDS |
| TAAAGTACCGTGCCTTGTTT+GGG | 0.391492 | 2_1:+4743013 | None:intergenic |
| AGTTATTGGAAGTGATGAAT+TGG | 0.394248 | 2_1:-4741511 | Msa0189330:CDS |
| CCCGTAGTGGCTAGAGGAAA+AGG | 0.404206 | 2_1:-4741389 | Msa0189330:CDS |
| AAATGCCATTATTACTGATC+AGG | 0.420229 | 2_1:-4742470 | Msa0189330:CDS |
| CTCTGTGTGCTTAAACTCTC+TGG | 0.422787 | 2_1:-4741710 | Msa0189330:CDS |
| ACTGAATGCATGTATATGTT+TGG | 0.428371 | 2_1:-4743088 | Msa0189330:CDS |
| ACATAACAGTGCAATAAATC+AGG | 0.429615 | 2_1:-4740927 | Msa0189330:intron |
| AGCAAAAGATGTGGTATTCA+AGG | 0.430318 | 2_1:-4741813 | Msa0189330:CDS |
| ATTTGATGAGCGACATCATT+GGG | 0.432888 | 2_1:-4742209 | Msa0189330:CDS |
| TGATCAGTAATAATGGCATT+TGG | 0.436971 | 2_1:+4742472 | None:intergenic |
| TGATGATTTACTCCAACAAA+AGG | 0.437844 | 2_1:+4742598 | None:intergenic |
| TTTAGATGTAACAAGAATAT+GGG | 0.441345 | 2_1:-4742994 | Msa0189330:CDS |
| TCCCAAAAGCCCGTCATAGA+TGG | 0.444126 | 2_1:-4742414 | Msa0189330:CDS |
| TCCATGGTTGTTGAAGCAAA+TGG | 0.444231 | 2_1:-4742904 | Msa0189330:CDS |
| ATTAAATGTGGTAACTTGAC+TGG | 0.448404 | 2_1:-4741614 | Msa0189330:CDS |
| CATGAATTATGCTCGACGTA+TGG | 0.448690 | 2_1:-4743259 | Msa0189330:CDS |
| AGGTCAGGCGGCTAAGGCTT+GGG | 0.449234 | 2_1:-4742831 | Msa0189330:CDS |
| AAGGTCAGGCGGCTAAGGCT+TGG | 0.449609 | 2_1:-4742832 | Msa0189330:CDS |
| CATGATAATGAATGGTTGAA+AGG | 0.452443 | 2_1:-4742235 | Msa0189330:CDS |
| TTTGAACAACAGGCAATCTC+AGG | 0.461480 | 2_1:+4741169 | None:intergenic |
| ATGATAATGAATGGTTGAAA+GGG | 0.468007 | 2_1:-4742234 | Msa0189330:CDS |
| CCGTTTAAGAAATGTATTCT+GGG | 0.474263 | 2_1:-4742716 | Msa0189330:CDS |
| GAAACTATATAGACAAGGTC+AGG | 0.479084 | 2_1:-4742846 | Msa0189330:CDS |
| CCCGTCATAGATGGTGCTTA+TGG | 0.481914 | 2_1:-4742405 | Msa0189330:CDS |
| ATGAATTATGCTCGACGTAT+GGG | 0.482988 | 2_1:-4743258 | Msa0189330:CDS |
| ATATTTGTTTGTTAAATAAG+TGG | 0.483824 | 2_1:+4742636 | None:intergenic |
| TGTTCTTGATTTGGATTGAA+GGG | 0.485095 | 2_1:+4740766 | None:intergenic |
| ACTTTAGCATGTAGTCGTGC+AGG | 0.485304 | 2_1:-4743180 | Msa0189330:CDS |
| TACTTCATTTGAAGAATTGG+TGG | 0.485590 | 2_1:-4741885 | Msa0189330:CDS |
| GTAGTTACAAGTGTTACTCT+TGG | 0.485901 | 2_1:-4743054 | Msa0189330:CDS |
| CTAGCATTAAAACACAATGT+AGG | 0.486737 | 2_1:-4743116 | Msa0189330:CDS |
| GATGATTTACTCCAACAAAA+GGG | 0.488733 | 2_1:+4742599 | None:intergenic |
| CCATGGTTGTTGAAGCAAAT+GGG | 0.489569 | 2_1:-4742903 | Msa0189330:CDS |
| CACTTCCAATAACTCCTCTT+CGG | 0.491911 | 2_1:+4741520 | None:intergenic |
| CATTATTACTGATCAGGATA+AGG | 0.492137 | 2_1:-4742464 | Msa0189330:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.494704 | 2_1:-4742883 | Msa0189330:CDS |
| ACTCCAACAAAAGGGGCAAA+AGG | 0.494706 | 2_1:+4742607 | None:intergenic |
| GTTACTCTTGGCCATAATCA+TGG | 0.497383 | 2_1:-4743042 | Msa0189330:CDS |
| ATAAGATTGAAAAGGAAAGC+AGG | 0.500957 | 2_1:-4742042 | Msa0189330:CDS |
| AGGCGGCTAAGGCTTGGGAC+AGG | 0.506657 | 2_1:-4742826 | Msa0189330:CDS |
| TAGACAAGGTCAGGCGGCTA+AGG | 0.507073 | 2_1:-4742837 | Msa0189330:CDS |
| ATGTTCTTGATTTGGATTGA+AGG | 0.510387 | 2_1:+4740765 | None:intergenic |
| ACCGTGCCTTGTTTGGGCTA+AGG | 0.513773 | 2_1:+4743019 | None:intergenic |
| AATTTGTCAAAGTTCAAAAG+AGG | 0.516865 | 2_1:-4741273 | Msa0189330:intron |
| TAGCATTAAAACACAATGTA+GGG | 0.517008 | 2_1:-4743115 | Msa0189330:CDS |
| TCTGGGCAGATGCAAGATGT+AGG | 0.517224 | 2_1:-4742699 | Msa0189330:CDS |
| ATTGAAAGATAAGATTGAAA+AGG | 0.518395 | 2_1:-4742050 | Msa0189330:CDS |
| TATTTGATGAGCGACATCAT+TGG | 0.521365 | 2_1:-4742210 | Msa0189330:CDS |
| GACATTTAGCTCGGAAGCGG+AGG | 0.538522 | 2_1:-4743295 | Msa0189330:CDS |
| GCATGGTTAGAATGCATGTA+TGG | 0.542778 | 2_1:-4742502 | Msa0189330:CDS |
| CCCATTTGCTTCAACAACCA+TGG | 0.544932 | 2_1:+4742903 | None:intergenic |
| GGAAGTGATGAATTGGATCA+AGG | 0.545110 | 2_1:-4741504 | Msa0189330:CDS |
| TACTGAAATGACATTTAGCT+CGG | 0.553939 | 2_1:-4743304 | None:intergenic |
| CTGGGCAGATGCAAGATGTA+GGG | 0.554233 | 2_1:-4742698 | Msa0189330:CDS |
| GCCATAAGCACCATCTATGA+CGG | 0.557023 | 2_1:+4742404 | None:intergenic |
| CCGTAGTGGCTAGAGGAAAA+GGG | 0.567286 | 2_1:-4741388 | Msa0189330:CDS |
| AATGCATGTATATGTTTGGA+TGG | 0.568180 | 2_1:-4743084 | Msa0189330:CDS |
| CCATAAGCACCATCTATGAC+GGG | 0.570872 | 2_1:+4742405 | None:intergenic |
| ACTTCATTTGAAGAATTGGT+GGG | 0.572053 | 2_1:-4741884 | Msa0189330:CDS |
| GCGCCCTCCTTCAAAACGAA+AGG | 0.577527 | 2_1:-4741366 | Msa0189330:CDS |
| AATGACATTTAGCTCGGAAG+CGG | 0.579804 | 2_1:-4743298 | Msa0189330:CDS |
| AGCATAATTCATGTAATACA+AGG | 0.583901 | 2_1:+4743269 | None:intergenic |
| TCGCTGTGTAGTTGACATCC+CGG | 0.586566 | 2_1:+4742156 | None:intergenic |
| CGACATACACTTATTAAATG+TGG | 0.586905 | 2_1:-4741626 | Msa0189330:CDS |
| TAAGATTGAAAAGGAAAGCA+GGG | 0.588196 | 2_1:-4742041 | Msa0189330:CDS |
| TAACCATGCGGTGAATAACC+AGG | 0.590885 | 2_1:+4742516 | None:intergenic |
| CTGGATCCCGTAGTGGCTAG+AGG | 0.596726 | 2_1:-4741395 | Msa0189330:CDS |
| TTAGAGATTAATGATCAAGC+AGG | 0.597773 | 2_1:-4742952 | Msa0189330:CDS |
| TTACCTGGTTATTCACCGCA+TGG | 0.601287 | 2_1:-4742519 | Msa0189330:CDS |
| TACAGAGATAAGCACCGAAG+AGG | 0.602848 | 2_1:-4741534 | Msa0189330:CDS |
| AACACGTCCCTCACATACAC+AGG | 0.605724 | 2_1:+4742184 | None:intergenic |
| GCCTTAGCCCAAACAAGGCA+CGG | 0.608538 | 2_1:-4743020 | Msa0189330:CDS |
| TCATGGCCTTAGCCCAAACA+AGG | 0.608595 | 2_1:-4743025 | Msa0189330:CDS |
| ATGAGCTACATGATAATGAA+TGG | 0.609646 | 2_1:-4742243 | Msa0189330:CDS |
| GTGTATTTGTAGTGTGAGCA+AGG | 0.609896 | 2_1:-4740832 | Msa0189330:intron |
| ATTGGGTTCCTGTGTATGTG+AGG | 0.610862 | 2_1:-4742192 | Msa0189330:CDS |
| AGGGCTGCATATGAATACTT+TGG | 0.613424 | 2_1:-4742679 | Msa0189330:CDS |
| ATGATTTACTCCAACAAAAG+GGG | 0.614284 | 2_1:+4742600 | None:intergenic |
| AAAGTGATTTCGTAGAGAGG+TGG | 0.617973 | 2_1:-4742285 | Msa0189330:CDS |
| AATGTTGAGTTACAGCGTGT+TGG | 0.628256 | 2_1:-4741590 | Msa0189330:CDS |
| TTTGTTGGAGTAAATCATCA+CGG | 0.639777 | 2_1:-4742595 | Msa0189330:CDS |
| TAGAATTCTGGATCCCGTAG+TGG | 0.639964 | 2_1:-4741402 | Msa0189330:CDS |
| TTAGATGTAACAAGAATATG+GGG | 0.645113 | 2_1:-4742993 | Msa0189330:CDS |
| GCAAAAGTGATTTCGTAGAG+AGG | 0.653770 | 2_1:-4742288 | Msa0189330:CDS |
| GATCAGAACGAGTAACATTG+TGG | 0.656997 | 2_1:+4740467 | None:intergenic |
| ACTATATAGACAAGGTCAGG+CGG | 0.657287 | 2_1:-4742843 | Msa0189330:CDS |
| CTGTAGAAACTATATAGACA+AGG | 0.659640 | 2_1:-4742851 | Msa0189330:CDS |
| TTGGGTTCCTGTGTATGTGA+GGG | 0.669172 | 2_1:-4742191 | Msa0189330:CDS |
| ATACGACAAAGCAAAAGATG+TGG | 0.673334 | 2_1:-4741822 | Msa0189330:CDS |
| TTGTGCACTCTTATCACATG+AGG | 0.680978 | 2_1:-4742554 | Msa0189330:CDS |
| ATACATGCATTCTAACCATG+CGG | 0.735598 | 2_1:+4742504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTATAAAATTTATTTTC+TGG | - | chr2_1:4742358-4742377 | Msa0189330:CDS | 10.0% |
| !!! | ATATTTGTTTGTTAAATAAG+TGG | + | chr2_1:4740967-4740986 | None:intergenic | 15.0% |
| !! | ATTTGAAAACTAATATCAAT+TGG | - | chr2_1:4742910-4742929 | Msa0189330:CDS | 15.0% |
| !! | TATTTCATTTGAGAATAATT+TGG | + | chr2_1:4743113-4743132 | None:intergenic | 15.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | - | chr2_1:4740375-4740394 | Msa0189330:intron | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | - | chr2_1:4740606-4740625 | Msa0189330:intron | 20.0% |
| !!! | TAGTCAGTTTTATTATGTAA+TGG | - | chr2_1:4740845-4740864 | Msa0189330:intron | 20.0% |
| !!! | AGTATGAATTCATTTTTTGA+TGG | - | chr2_1:4741473-4741492 | Msa0189330:CDS | 20.0% |
| !!! | GTATGAATTCATTTTTTGAT+GGG | - | chr2_1:4741474-4741493 | Msa0189330:CDS | 20.0% |
| !! | ATTGAAAGATAAGATTGAAA+AGG | - | chr2_1:4741550-4741569 | Msa0189330:CDS | 20.0% |
| !! | TGAGAAAAAATATAATGAGA+TGG | + | chr2_1:4741932-4741951 | None:intergenic | 20.0% |
| !! | TTAACTTCTTCTATGATAAT+AGG | + | chr2_1:4742157-4742176 | None:intergenic | 20.0% |
| !!! | TTTGACAAATTGTTCTTTTT+TGG | + | chr2_1:4742318-4742337 | None:intergenic | 20.0% |
| !!! | GTCTAATTTTTGTTTTTTCA+TGG | - | chr2_1:4742403-4742422 | Msa0189330:CDS | 20.0% |
| !!! | CTAGATATGAAATTTTTGAT+GGG | - | chr2_1:4742475-4742494 | Msa0189330:CDS | 20.0% |
| !! | AATAAATCAGGTTTAAACAT+AGG | - | chr2_1:4742685-4742704 | Msa0189330:CDS | 20.0% |
| !! | TTATGGTATAAATACTGAAA+TGG | + | chr2_1:4742730-4742749 | None:intergenic | 20.0% |
| !! | GAGAGATAAACATTAATTTA+TGG | + | chr2_1:4742747-4742766 | None:intergenic | 20.0% |
| !! | AAATTATGCTACAAATTTGT+TGG | - | chr2_1:4742960-4742979 | Msa0189330:CDS | 20.0% |
| ! | AGCATAATTCATGTAATACA+AGG | + | chr2_1:4740334-4740353 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | - | chr2_1:4740485-4740504 | Msa0189330:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | - | chr2_1:4740605-4740624 | Msa0189330:intron | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | - | chr2_1:4740607-4740626 | Msa0189330:intron | 25.0% |
| !!! | GTTTTATTATGTAATGGATG+TGG | - | chr2_1:4740851-4740870 | Msa0189330:intron | 25.0% |
| ! | CTTATGGCATTTAATGAAAA+AGG | - | chr2_1:4741211-4741230 | Msa0189330:intron | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | - | chr2_1:4741366-4741385 | Msa0189330:CDS | 25.0% |
| ! | CAATACTTCATTTGAAGAAT+TGG | - | chr2_1:4741712-4741731 | Msa0189330:CDS | 25.0% |
| !!! | CTCATTATATTTTTTCTCAG+TGG | - | chr2_1:4741933-4741952 | Msa0189330:CDS | 25.0% |
| !!! | ATTATATTTTTTCTCAGTGG+AGG | - | chr2_1:4741936-4741955 | Msa0189330:CDS | 25.0% |
| ! | AATTTGTCAAAGTTCAAAAG+AGG | - | chr2_1:4742327-4742346 | Msa0189330:CDS | 25.0% |
| !!! | AATTTTTGTTTTTTCATGGC+AGG | - | chr2_1:4742407-4742426 | Msa0189330:CDS | 25.0% |
| !!! | ATTTTTGTTTTTTCATGGCA+GGG | - | chr2_1:4742408-4742427 | Msa0189330:CDS | 25.0% |
| !!! | TTTGTAGTATTTTGAACAAC+AGG | + | chr2_1:4742444-4742463 | None:intergenic | 25.0% |
| ! | CCATCAAAAATTTCATATCT+AGG | + | chr2_1:4742477-4742496 | None:intergenic | 25.0% |
| !! | CCTAGATATGAAATTTTTGA+TGG | - | chr2_1:4742474-4742493 | Msa0189330:CDS | 25.0% |
| ! | TGTATCTTTATATCTATAGC+AGG | - | chr2_1:4742580-4742599 | Msa0189330:CDS | 25.0% |
| !!! | TATTTTAGGAACAATGGATA+TGG | - | chr2_1:4742792-4742811 | Msa0189330:CDS | 25.0% |
| !! | TTTTTCTTAAGTTTGATCTG+CGG | - | chr2_1:4743001-4743020 | Msa0189330:CDS | 25.0% |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | + | chr2_1:4740480-4740499 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | - | chr2_1:4740484-4740503 | Msa0189330:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | - | chr2_1:4740512-4740531 | Msa0189330:intron | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | - | chr2_1:4740516-4740535 | Msa0189330:intron | 30.0% | |
| TTAGAGATTAATGATCAAGC+AGG | - | chr2_1:4740648-4740667 | Msa0189330:intron | 30.0% | |
| ! | CAGTAGAAATTTTAGATCCA+TGG | - | chr2_1:4740680-4740699 | Msa0189330:intron | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | - | chr2_1:4740749-4740768 | Msa0189330:CDS | 30.0% | |
| CCCAGAATACATTTCTTAAA+CGG | + | chr2_1:4740887-4740906 | None:intergenic | 30.0% | |
| CCGTTTAAGAAATGTATTCT+GGG | - | chr2_1:4740884-4740903 | Msa0189330:intron | 30.0% | |
| ATGATTTACTCCAACAAAAG+GGG | + | chr2_1:4741003-4741022 | None:intergenic | 30.0% | |
| GATGATTTACTCCAACAAAA+GGG | + | chr2_1:4741004-4741023 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | + | chr2_1:4741005-4741024 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | - | chr2_1:4741005-4741024 | Msa0189330:intron | 30.0% | |
| TGATCAGTAATAATGGCATT+TGG | + | chr2_1:4741131-4741150 | None:intergenic | 30.0% | |
| AAATGCCATTATTACTGATC+AGG | - | chr2_1:4741130-4741149 | Msa0189330:CDS | 30.0% | |
| CTTATCCTGATCAGTAATAA+TGG | + | chr2_1:4741138-4741157 | None:intergenic | 30.0% | |
| CATTATTACTGATCAGGATA+AGG | - | chr2_1:4741136-4741155 | Msa0189330:CDS | 30.0% | |
| !! | AAAAAGGTACCTGAAAAGTT+TGG | - | chr2_1:4741227-4741246 | Msa0189330:intron | 30.0% |
| ! | GAGTATTTACCAAACTTTTC+AGG | + | chr2_1:4741239-4741258 | None:intergenic | 30.0% |
| ! | ATGAGCTACATGATAATGAA+TGG | - | chr2_1:4741357-4741376 | Msa0189330:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | - | chr2_1:4741365-4741384 | Msa0189330:CDS | 30.0% |
| ATAAGATTGAAAAGGAAAGC+AGG | - | chr2_1:4741558-4741577 | Msa0189330:CDS | 30.0% | |
| TAAGATTGAAAAGGAAAGCA+GGG | - | chr2_1:4741559-4741578 | Msa0189330:CDS | 30.0% | |
| ! | ATTGCTTGTGTAAGTCATTT+TGG | - | chr2_1:4741608-4741627 | Msa0189330:CDS | 30.0% |
| !! | TTGCGTTGGTAAATGATTTT+TGG | + | chr2_1:4741649-4741668 | None:intergenic | 30.0% |
| ! | AAATTCTCTGAATTTTGCGT+TGG | + | chr2_1:4741663-4741682 | None:intergenic | 30.0% |
| TACTTCATTTGAAGAATTGG+TGG | - | chr2_1:4741715-4741734 | Msa0189330:CDS | 30.0% | |
| ACTTCATTTGAAGAATTGGT+GGG | - | chr2_1:4741716-4741735 | Msa0189330:CDS | 30.0% | |
| !! | CTCAAAGTCTTTTTCATTGT+AGG | + | chr2_1:4741816-4741835 | None:intergenic | 30.0% |
| ! | TGCTGCTTATTTGAGTTTAA+AGG | - | chr2_1:4741848-4741867 | Msa0189330:CDS | 30.0% |
| CGACATACACTTATTAAATG+TGG | - | chr2_1:4741974-4741993 | Msa0189330:CDS | 30.0% | |
| ATTAAATGTGGTAACTTGAC+TGG | - | chr2_1:4741986-4742005 | Msa0189330:CDS | 30.0% | |
| TGTAGAAGCAACTTCATAAA+AGG | + | chr2_1:4742050-4742069 | None:intergenic | 30.0% | |
| AGTTATTGGAAGTGATGAAT+TGG | - | chr2_1:4742089-4742108 | Msa0189330:CDS | 30.0% | |
| GTTATAAAGAAGAAGATTGC+AGG | - | chr2_1:4742274-4742293 | Msa0189330:CDS | 30.0% | |
| TGTTCTTCATTTGGATCAAA+TGG | + | chr2_1:4742656-4742675 | None:intergenic | 30.0% | |
| ACATAACAGTGCAATAAATC+AGG | - | chr2_1:4742673-4742692 | Msa0189330:CDS | 30.0% | |
| !!! | CAAGGTTATTTTAGGAACAA+TGG | - | chr2_1:4742786-4742805 | Msa0189330:CDS | 30.0% |
| !! | TGTTCTTGATTTGGATTGAA+GGG | + | chr2_1:4742837-4742856 | None:intergenic | 30.0% |
| !! | ATGTTCTTGATTTGGATTGA+AGG | + | chr2_1:4742838-4742857 | None:intergenic | 30.0% |
| TCAGCAAAATGTTCTTGATT+TGG | + | chr2_1:4742846-4742865 | None:intergenic | 30.0% | |
| ! | ACATTTTGCTGAAGTAAACA+AGG | - | chr2_1:4742854-4742873 | Msa0189330:CDS | 30.0% |
| TAATATCAATTGGATGCCAA+AGG | - | chr2_1:4742920-4742939 | Msa0189330:CDS | 30.0% | |
| AAAAAACATAGCAGACTAGA+AGG | + | chr2_1:4742986-4743005 | None:intergenic | 30.0% | |
| ! | AGGTATTGTCTCTTATTGTA+TGG | - | chr2_1:4743162-4743181 | Msa0189330:CDS | 30.0% |
| TCAGTTAGTTGTTTATTGTG+TGG | - | chr2_1:4743193-4743212 | Msa0189330:CDS | 30.0% | |
| ! | ATCTCTTTGTGTCTTTTTGT+AGG | - | chr2_1:4743247-4743266 | Msa0189330:CDS | 30.0% |
| ATGAATTATGCTCGACGTAT+GGG | - | chr2_1:4740342-4740361 | Msa0189330:intron | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | - | chr2_1:4740384-4740403 | Msa0189330:intron | 35.0% | |
| ! | GTAGTTACAAGTGTTACTCT+TGG | - | chr2_1:4740546-4740565 | Msa0189330:intron | 35.0% |
| ATATGGGGTCTCACATAAAA+AGG | - | chr2_1:4740622-4740641 | Msa0189330:intron | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | - | chr2_1:4740754-4740773 | Msa0189330:CDS | 35.0% | |
| GCCGTTTAAGAAATGTATTC+TGG | - | chr2_1:4740883-4740902 | Msa0189330:intron | 35.0% | |
| ATACATGCATTCTAACCATG+CGG | + | chr2_1:4741099-4741118 | None:intergenic | 35.0% | |
| TCAGGATAAGGCAATGAAAA+AGG | - | chr2_1:4741148-4741167 | Msa0189330:CDS | 35.0% | |
| TATTTGATGAGCGACATCAT+TGG | - | chr2_1:4741390-4741409 | Msa0189330:CDS | 35.0% | |
| ATTTGATGAGCGACATCATT+GGG | - | chr2_1:4741391-4741410 | Msa0189330:CDS | 35.0% | |
| ATACGACAAAGCAAAAGATG+TGG | - | chr2_1:4741778-4741797 | Msa0189330:CDS | 35.0% | |
| AGCAAAAGATGTGGTATTCA+AGG | - | chr2_1:4741787-4741806 | Msa0189330:CDS | 35.0% | |
| !!! | TATTTTTTCTCAGTGGAGGA+AGG | - | chr2_1:4741940-4741959 | Msa0189330:CDS | 35.0% |
| ! | AAATCAAGCGTCTAGAATTC+TGG | - | chr2_1:4742186-4742205 | Msa0189330:CDS | 35.0% |
| ! | ATAGAAGCCTTTCGTTTTGA+AGG | + | chr2_1:4742244-4742263 | None:intergenic | 35.0% |
| TACATCTTGAGCAGTGAAAA+TGG | - | chr2_1:4742611-4742630 | Msa0189330:CDS | 35.0% | |
| GCACTGTTATGTTCTTCATT+TGG | + | chr2_1:4742665-4742684 | None:intergenic | 35.0% | |
| !! | AGTGTGAGCAAGGTTATTTT+AGG | - | chr2_1:4742778-4742797 | Msa0189330:CDS | 35.0% |
| ATTTCATCCACCAAATCCTT+TGG | + | chr2_1:4742939-4742958 | None:intergenic | 35.0% | |
| TGATTTAGTATATTCCACGC+AGG | - | chr2_1:4743085-4743104 | Msa0189330:CDS | 35.0% | |
| ! | TACTCGTTCTGATCTTTTTC+AGG | - | chr2_1:4743142-4743161 | Msa0189330:CDS | 35.0% |
| CATGAATTATGCTCGACGTA+TGG | - | chr2_1:4740341-4740360 | Msa0189330:intron | 40.0% | |
| GTTACTCTTGGCCATAATCA+TGG | - | chr2_1:4740558-4740577 | Msa0189330:intron | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | + | chr2_1:4740590-4740609 | None:intergenic | 40.0% |
| TCCATGGTTGTTGAAGCAAA+TGG | - | chr2_1:4740696-4740715 | Msa0189330:intron | 40.0% | |
| CCATGGTTGTTGAAGCAAAT+GGG | - | chr2_1:4740697-4740716 | Msa0189330:intron | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | - | chr2_1:4740717-4740736 | Msa0189330:intron | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | - | chr2_1:4740757-4740776 | Msa0189330:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | - | chr2_1:4740921-4740940 | Msa0189330:intron | 40.0% | |
| TCACGGTCAATCTGTGTTAT+TGG | - | chr2_1:4741022-4741041 | Msa0189330:intron | 40.0% | |
| ! | CACGGTCAATCTGTGTTATT+GGG | - | chr2_1:4741023-4741042 | Msa0189330:intron | 40.0% |
| TTGTGCACTCTTATCACATG+AGG | - | chr2_1:4741046-4741065 | Msa0189330:intron | 40.0% | |
| ! | AGGATGCTAACACTTTTACC+TGG | - | chr2_1:4741066-4741085 | Msa0189330:intron | 40.0% |
| GCATGGTTAGAATGCATGTA+TGG | - | chr2_1:4741098-4741117 | Msa0189330:intron | 40.0% | |
| GCAAAAGTGATTTCGTAGAG+AGG | - | chr2_1:4741312-4741331 | Msa0189330:CDS | 40.0% | |
| AAAGTGATTTCGTAGAGAGG+TGG | - | chr2_1:4741315-4741334 | Msa0189330:CDS | 40.0% | |
| AATGTTGAGTTACAGCGTGT+TGG | - | chr2_1:4742010-4742029 | Msa0189330:CDS | 40.0% | |
| CACTTCCAATAACTCCTCTT+CGG | + | chr2_1:4742083-4742102 | None:intergenic | 40.0% | |
| GGAAGTGATGAATTGGATCA+AGG | - | chr2_1:4742096-4742115 | Msa0189330:CDS | 40.0% | |
| !!! | AAGCCTTTCGTTTTGAAGGA+GGG | + | chr2_1:4742240-4742259 | None:intergenic | 40.0% |
| TTTGAACAACAGGCAATCTC+AGG | + | chr2_1:4742434-4742453 | None:intergenic | 40.0% | |
| GTGTATTTGTAGTGTGAGCA+AGG | - | chr2_1:4742768-4742787 | Msa0189330:CDS | 40.0% | |
| CAATTGGATGCCAAAGGATT+TGG | - | chr2_1:4742926-4742945 | Msa0189330:CDS | 40.0% | |
| CCTACTGCTGTCAAATTTAC+AGG | + | chr2_1:4743035-4743054 | None:intergenic | 40.0% | |
| CCTGTAAATTTGACAGCAGT+AGG | - | chr2_1:4743032-4743051 | Msa0189330:CDS | 40.0% | |
| ! | AGAATAATTTGGAACCTGCG+TGG | + | chr2_1:4743102-4743121 | None:intergenic | 40.0% |
| GATCAGAACGAGTAACATTG+TGG | + | chr2_1:4743136-4743155 | None:intergenic | 40.0% | |
| TATGCTCGACGTATGGGTTT+CGG | - | chr2_1:4740348-4740367 | Msa0189330:intron | 45.0% | |
| ACTTTAGCATGTAGTCGTGC+AGG | - | chr2_1:4740420-4740439 | Msa0189330:intron | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | + | chr2_1:4740572-4740591 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | + | chr2_1:4740591-4740610 | None:intergenic | 45.0% |
| CCCATTTGCTTCAACAACCA+TGG | + | chr2_1:4740700-4740719 | None:intergenic | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | - | chr2_1:4740990-4741009 | Msa0189330:CDS | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | + | chr2_1:4740996-4741015 | None:intergenic | 45.0% | |
| TTACCTGGTTATTCACCGCA+TGG | - | chr2_1:4741081-4741100 | Msa0189330:intron | 45.0% | |
| TAACCATGCGGTGAATAACC+AGG | + | chr2_1:4741087-4741106 | None:intergenic | 45.0% | |
| GGCAATGAAAAAGGCGATTG+AGG | - | chr2_1:4741157-4741176 | Msa0189330:CDS | 45.0% | |
| !!! | ACCATCTATGACGGGCTTTT+GGG | + | chr2_1:4741190-4741209 | None:intergenic | 45.0% |
| CCATAAGCACCATCTATGAC+GGG | + | chr2_1:4741198-4741217 | None:intergenic | 45.0% | |
| GCCATAAGCACCATCTATGA+CGG | + | chr2_1:4741199-4741218 | None:intergenic | 45.0% | |
| ATTGGGTTCCTGTGTATGTG+AGG | - | chr2_1:4741408-4741427 | Msa0189330:CDS | 45.0% | |
| TTGGGTTCCTGTGTATGTGA+GGG | - | chr2_1:4741409-4741428 | Msa0189330:CDS | 45.0% | |
| ! | TGTATGTGAGGGACGTGTTT+TGG | - | chr2_1:4741420-4741439 | Msa0189330:CDS | 45.0% |
| ! | GTATGTGAGGGACGTGTTTT+GGG | - | chr2_1:4741421-4741440 | Msa0189330:CDS | 45.0% |
| !! | AAGGAAAGCAGGGCTGATTT+TGG | - | chr2_1:4741569-4741588 | Msa0189330:CDS | 45.0% |
| CTCTGTGTGCTTAAACTCTC+TGG | - | chr2_1:4741890-4741909 | Msa0189330:CDS | 45.0% | |
| !! | TACAGAGATAAGCACCGAAG+AGG | - | chr2_1:4742066-4742085 | Msa0189330:CDS | 45.0% |
| !! | AAGCACCGAAGAGGAGTTAT+TGG | - | chr2_1:4742075-4742094 | Msa0189330:CDS | 45.0% |
| TAGAATTCTGGATCCCGTAG+TGG | - | chr2_1:4742198-4742217 | Msa0189330:CDS | 45.0% | |
| !!! | GAAGCCTTTCGTTTTGAAGG+AGG | + | chr2_1:4742241-4742260 | None:intergenic | 45.0% |
| TTGGATGCCAAAGGATTTGG+TGG | - | chr2_1:4742929-4742948 | Msa0189330:CDS | 45.0% | |
| ! | TCATGGCCTTAGCCCAAACA+AGG | - | chr2_1:4740575-4740594 | Msa0189330:intron | 50.0% |
| TCTGGGCAGATGCAAGATGT+AGG | - | chr2_1:4740901-4740920 | Msa0189330:intron | 50.0% | |
| CTGGGCAGATGCAAGATGTA+GGG | - | chr2_1:4740902-4740921 | Msa0189330:intron | 50.0% | |
| TCCCAAAAGCCCGTCATAGA+TGG | - | chr2_1:4741186-4741205 | Msa0189330:intron | 50.0% | |
| !!! | CACCATCTATGACGGGCTTT+TGG | + | chr2_1:4741191-4741210 | None:intergenic | 50.0% |
| CCCGTCATAGATGGTGCTTA+TGG | - | chr2_1:4741195-4741214 | Msa0189330:intron | 50.0% | |
| AACACGTCCCTCACATACAC+AGG | + | chr2_1:4741419-4741438 | None:intergenic | 50.0% | |
| TCGCTGTGTAGTTGACATCC+CGG | + | chr2_1:4741447-4741466 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTCTAGCCACTAC+GGG | + | chr2_1:4742214-4742233 | None:intergenic | 50.0% |
| ! | CCCTTTTCCTCTAGCCACTA+CGG | + | chr2_1:4742215-4742234 | None:intergenic | 50.0% |
| CCGTAGTGGCTAGAGGAAAA+GGG | - | chr2_1:4742212-4742231 | Msa0189330:CDS | 50.0% | |
| ! | GACATTTAGCTCGGAAGCGG+AGG | - | chr2_1:4740305-4740324 | Msa0189330:CDS | 55.0% |
| GCCTTAGCCCAAACAAGGCA+CGG | - | chr2_1:4740580-4740599 | Msa0189330:intron | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | + | chr2_1:4740584-4740603 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | - | chr2_1:4740763-4740782 | Msa0189330:CDS | 55.0% | |
| CCCGTAGTGGCTAGAGGAAA+AGG | - | chr2_1:4742211-4742230 | Msa0189330:CDS | 55.0% | |
| GCGCCCTCCTTCAAAACGAA+AGG | - | chr2_1:4742234-4742253 | Msa0189330:CDS | 55.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | - | chr2_1:4740768-4740787 | Msa0189330:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | - | chr2_1:4740769-4740788 | Msa0189330:CDS | 60.0% | |
| !! | GTGAGGGACGTGTTTTGGGC+CGG | - | chr2_1:4741425-4741444 | Msa0189330:CDS | 60.0% |
| !! | TGAGGGACGTGTTTTGGGCC+GGG | - | chr2_1:4741426-4741445 | Msa0189330:CDS | 60.0% |
| CTGGATCCCGTAGTGGCTAG+AGG | - | chr2_1:4742205-4742224 | Msa0189330:CDS | 60.0% | |
| AGGCGGCTAAGGCTTGGGAC+AGG | - | chr2_1:4740774-4740793 | Msa0189330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4740303 | 4743319 | 4740303 | ID=Msa0189330;Name=Msa0189330 |
| chr2_1 | mRNA | 4740303 | 4743319 | 4740303 | ID=Msa0189330-mRNA-1;Parent=Msa0189330;Name=Msa0189330-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.16|1|1|6|0|811 |
| chr2_1 | exon | 4741274 | 4743319 | 4741274 | ID=Msa0189330-mRNA-1:exon:2123;Parent=Msa0189330-mRNA-1 |
| chr2_1 | exon | 4741101 | 4741193 | 4741101 | ID=Msa0189330-mRNA-1:exon:2122;Parent=Msa0189330-mRNA-1 |
| chr2_1 | exon | 4740928 | 4741020 | 4740928 | ID=Msa0189330-mRNA-1:exon:2121;Parent=Msa0189330-mRNA-1 |
| chr2_1 | exon | 4740747 | 4740842 | 4740747 | ID=Msa0189330-mRNA-1:exon:2120;Parent=Msa0189330-mRNA-1 |
| chr2_1 | exon | 4740459 | 4740515 | 4740459 | ID=Msa0189330-mRNA-1:exon:2119;Parent=Msa0189330-mRNA-1 |
| chr2_1 | exon | 4740303 | 4740353 | 4740303 | ID=Msa0189330-mRNA-1:exon:2118;Parent=Msa0189330-mRNA-1 |
| chr2_1 | CDS | 4741274 | 4743319 | 4741274 | ID=Msa0189330-mRNA-1:cds;Parent=Msa0189330-mRNA-1 |
| chr2_1 | CDS | 4741101 | 4741193 | 4741101 | ID=Msa0189330-mRNA-1:cds;Parent=Msa0189330-mRNA-1 |
| chr2_1 | CDS | 4740928 | 4741020 | 4740928 | ID=Msa0189330-mRNA-1:cds;Parent=Msa0189330-mRNA-1 |
| chr2_1 | CDS | 4740747 | 4740842 | 4740747 | ID=Msa0189330-mRNA-1:cds;Parent=Msa0189330-mRNA-1 |
| chr2_1 | CDS | 4740459 | 4740515 | 4740459 | ID=Msa0189330-mRNA-1:cds;Parent=Msa0189330-mRNA-1 |
| chr2_1 | CDS | 4740303 | 4740353 | 4740303 | ID=Msa0189330-mRNA-1:cds;Parent=Msa0189330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
