Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387040 | XP_024642129.1 | 95.210 | 689 | 31 | 1 | 1 | 687 | 1 | 689 | 0.0 | 1352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387040 | sp|Q9SWG3|FAR1_ARATH | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 1.24e-122 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387040 | A0A2K3N9Z9 | 82.310 | 684 | 119 | 1 | 1 | 682 | 1 | 684 | 0.0 | 1190 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1387040 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189330 | Msa1387040 | 0.901021 | 4.079687e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387040 | MtrunA17_Chr2g0296781 | 76.702 | 661 | 151 | 2 | 1 | 659 | 1 | 660 | 0.0 | 1091 |
| Msa1387040 | MtrunA17_Chr1g0196541 | 68.222 | 686 | 213 | 2 | 1 | 685 | 1 | 682 | 0.0 | 953 |
| Msa1387040 | MtrunA17_Chr6g0477261 | 79.636 | 550 | 109 | 2 | 112 | 659 | 1 | 549 | 0.0 | 939 |
| Msa1387040 | MtrunA17_Chr5g0441581 | 48.253 | 601 | 293 | 7 | 1 | 596 | 36 | 623 | 0.0 | 577 |
| Msa1387040 | MtrunA17_Chr1g0207551 | 37.433 | 561 | 341 | 5 | 1 | 558 | 38 | 591 | 1.21e-124 | 389 |
| Msa1387040 | MtrunA17_Chr2g0291581 | 37.077 | 561 | 336 | 6 | 1 | 557 | 75 | 622 | 2.41e-121 | 377 |
| Msa1387040 | MtrunA17_Chr5g0448761 | 34.436 | 665 | 385 | 15 | 1 | 647 | 64 | 695 | 6.17e-120 | 376 |
| Msa1387040 | MtrunA17_Chr2g0329031 | 35.548 | 557 | 335 | 8 | 1 | 551 | 18 | 556 | 1.05e-117 | 369 |
| Msa1387040 | MtrunA17_Chr3g0080351 | 35.945 | 587 | 321 | 9 | 1 | 569 | 80 | 629 | 3.73e-115 | 365 |
| Msa1387040 | MtrunA17_Chr1g0202341 | 35.739 | 568 | 342 | 10 | 1 | 557 | 55 | 610 | 6.40e-112 | 352 |
| Msa1387040 | MtrunA17_Chr2g0291591 | 37.076 | 472 | 293 | 2 | 1 | 470 | 68 | 537 | 8.83e-102 | 322 |
| Msa1387040 | MtrunA17_Chr5g0440451 | 32.884 | 593 | 344 | 13 | 1 | 565 | 47 | 613 | 2.81e-94 | 312 |
| Msa1387040 | MtrunA17_Chr5g0448511 | 34.901 | 404 | 255 | 4 | 154 | 556 | 1 | 397 | 1.07e-87 | 285 |
| Msa1387040 | MtrunA17_Chr3g0118611 | 35.032 | 471 | 273 | 9 | 93 | 556 | 57 | 501 | 1.37e-86 | 288 |
| Msa1387040 | MtrunA17_Chr2g0287651 | 29.194 | 620 | 419 | 11 | 1 | 610 | 79 | 688 | 3.15e-81 | 275 |
| Msa1387040 | MtrunA17_Chr8g0363841 | 31.016 | 561 | 372 | 8 | 4 | 556 | 24 | 577 | 4.21e-81 | 271 |
| Msa1387040 | MtrunA17_Chr1g0198761 | 28.804 | 677 | 430 | 19 | 2 | 650 | 52 | 704 | 2.40e-75 | 257 |
| Msa1387040 | MtrunA17_Chr2g0324011 | 27.797 | 572 | 380 | 12 | 1 | 556 | 14 | 568 | 3.36e-74 | 250 |
| Msa1387040 | MtrunA17_Chr6g0476441 | 68.485 | 165 | 49 | 2 | 497 | 659 | 2 | 165 | 1.10e-72 | 237 |
| Msa1387040 | MtrunA17_Chr2g0287061 | 31.295 | 556 | 333 | 15 | 3 | 554 | 189 | 699 | 1.03e-68 | 240 |
| Msa1387040 | MtrunA17_Chr2g0276841 | 29.027 | 565 | 355 | 15 | 12 | 553 | 85 | 626 | 4.12e-67 | 233 |
| Msa1387040 | MtrunA17_Chr1g0203051 | 29.050 | 537 | 358 | 12 | 11 | 537 | 93 | 616 | 4.46e-67 | 232 |
| Msa1387040 | MtrunA17_Chr3g0082121 | 30.623 | 578 | 345 | 20 | 1 | 556 | 47 | 590 | 2.21e-64 | 226 |
| Msa1387040 | MtrunA17_Chr6g0458391 | 27.496 | 571 | 365 | 14 | 1 | 556 | 229 | 765 | 2.29e-62 | 222 |
| Msa1387040 | MtrunA17_Chr1g0203721 | 26.950 | 564 | 393 | 8 | 3 | 556 | 69 | 623 | 4.52e-61 | 219 |
| Msa1387040 | MtrunA17_Chr2g0294841 | 26.667 | 570 | 382 | 11 | 3 | 552 | 51 | 604 | 3.05e-55 | 201 |
| Msa1387040 | MtrunA17_Chr5g0431001 | 30.496 | 423 | 252 | 10 | 2 | 395 | 66 | 475 | 2.20e-53 | 191 |
| Msa1387040 | MtrunA17_Chr1g0164591 | 33.333 | 324 | 184 | 11 | 75 | 384 | 3 | 308 | 2.18e-45 | 164 |
| Msa1387040 | MtrunA17_Chr2g0290391 | 25.000 | 580 | 386 | 17 | 1 | 554 | 55 | 611 | 3.77e-45 | 172 |
| Msa1387040 | MtrunA17_Chr7g0258861 | 31.159 | 276 | 183 | 4 | 1 | 269 | 14 | 289 | 1.34e-39 | 148 |
| Msa1387040 | MtrunA17_Chr6g0476431 | 65.116 | 86 | 30 | 0 | 1 | 86 | 1 | 86 | 3.97e-32 | 119 |
| Msa1387040 | MtrunA17_Chr6g0451441 | 31.500 | 200 | 121 | 6 | 1 | 189 | 91 | 285 | 7.54e-18 | 87.0 |
| Msa1387040 | MtrunA17_Chr1g0172041 | 37.500 | 96 | 59 | 1 | 468 | 563 | 1 | 95 | 8.46e-17 | 76.6 |
| Msa1387040 | MtrunA17_Chr2g0308841 | 28.372 | 215 | 145 | 6 | 341 | 553 | 17 | 224 | 5.28e-16 | 78.6 |
| Msa1387040 | MtrunA17_Chr1g0149131 | 30.000 | 110 | 76 | 1 | 271 | 379 | 1 | 110 | 1.49e-11 | 62.0 |
| Msa1387040 | MtrunA17_Chr3g0077731 | 56.604 | 53 | 22 | 1 | 607 | 659 | 1 | 52 | 2.19e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387040 | AT4G15090.1 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 1.26e-123 | 387 |
| Msa1387040 | AT4G15090.5 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 1.26e-123 | 387 |
| Msa1387040 | AT4G15090.3 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 1.26e-123 | 387 |
| Msa1387040 | AT4G15090.2 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 1.26e-123 | 387 |
| Msa1387040 | AT4G15090.4 | 35.441 | 601 | 374 | 7 | 1 | 595 | 55 | 647 | 1.26e-123 | 387 |
| Msa1387040 | AT1G76320.3 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 5.92e-118 | 368 |
| Msa1387040 | AT1G76320.1 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 2.39e-117 | 368 |
| Msa1387040 | AT1G76320.4 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 2.39e-117 | 368 |
| Msa1387040 | AT1G76320.2 | 35.993 | 564 | 343 | 8 | 1 | 561 | 1 | 549 | 2.69e-117 | 368 |
| Msa1387040 | AT4G38180.1 | 34.513 | 565 | 354 | 8 | 1 | 556 | 77 | 634 | 1.06e-115 | 365 |
| Msa1387040 | AT3G22170.2 | 34.662 | 577 | 330 | 7 | 1 | 559 | 74 | 621 | 4.94e-115 | 365 |
| Msa1387040 | AT3G22170.1 | 34.662 | 577 | 330 | 7 | 1 | 559 | 74 | 621 | 4.94e-115 | 365 |
| Msa1387040 | AT1G52520.1 | 34.828 | 580 | 354 | 12 | 1 | 572 | 89 | 652 | 7.96e-107 | 340 |
| Msa1387040 | AT1G80010.1 | 34.211 | 570 | 356 | 11 | 1 | 557 | 99 | 662 | 4.44e-99 | 320 |
| Msa1387040 | AT4G19990.7 | 32.776 | 598 | 341 | 10 | 3 | 580 | 41 | 597 | 2.49e-92 | 303 |
| Msa1387040 | AT4G19990.5 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 2.57e-92 | 303 |
| Msa1387040 | AT4G19990.3 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 3.01e-92 | 303 |
| Msa1387040 | AT4G19990.4 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 3.01e-92 | 303 |
| Msa1387040 | AT4G19990.1 | 33.451 | 565 | 321 | 9 | 19 | 580 | 14 | 526 | 3.33e-92 | 301 |
| Msa1387040 | AT4G19990.6 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 7.21e-92 | 302 |
| Msa1387040 | AT4G19990.2 | 32.776 | 598 | 341 | 10 | 3 | 580 | 27 | 583 | 7.21e-92 | 302 |
| Msa1387040 | AT2G32250.5 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 5.32e-90 | 297 |
| Msa1387040 | AT2G32250.8 | 32.554 | 556 | 325 | 8 | 1 | 553 | 1 | 509 | 7.90e-90 | 296 |
| Msa1387040 | AT2G32250.7 | 32.554 | 556 | 325 | 8 | 1 | 553 | 1 | 509 | 1.12e-89 | 296 |
| Msa1387040 | AT2G32250.2 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 1.99e-89 | 296 |
| Msa1387040 | AT2G32250.4 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 1.99e-89 | 296 |
| Msa1387040 | AT2G32250.6 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 2.16e-89 | 296 |
| Msa1387040 | AT2G32250.1 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 2.16e-89 | 296 |
| Msa1387040 | AT2G32250.3 | 32.554 | 556 | 325 | 8 | 1 | 553 | 42 | 550 | 2.16e-89 | 296 |
| Msa1387040 | AT2G27110.2 | 31.720 | 558 | 348 | 8 | 1 | 556 | 53 | 579 | 2.41e-87 | 292 |
| Msa1387040 | AT2G27110.1 | 31.720 | 558 | 348 | 8 | 1 | 556 | 53 | 579 | 2.41e-87 | 292 |
| Msa1387040 | AT2G27110.3 | 34.325 | 437 | 270 | 5 | 121 | 556 | 14 | 434 | 4.70e-84 | 280 |
| Msa1387040 | AT4G38170.1 | 33.418 | 395 | 251 | 6 | 168 | 560 | 19 | 403 | 9.52e-77 | 256 |
| Msa1387040 | AT3G06250.2 | 30.851 | 564 | 325 | 17 | 1 | 554 | 194 | 702 | 3.52e-71 | 246 |
| Msa1387040 | AT3G06250.1 | 30.851 | 564 | 325 | 17 | 1 | 554 | 194 | 702 | 3.52e-71 | 246 |
| Msa1387040 | AT3G06250.3 | 30.851 | 564 | 325 | 17 | 1 | 554 | 194 | 702 | 3.52e-71 | 246 |
| Msa1387040 | AT5G18960.2 | 30.481 | 561 | 334 | 16 | 1 | 554 | 215 | 726 | 1.41e-70 | 245 |
| Msa1387040 | AT5G18960.1 | 30.481 | 561 | 334 | 16 | 1 | 554 | 215 | 726 | 1.41e-70 | 245 |
| Msa1387040 | AT1G10240.2 | 28.850 | 565 | 356 | 15 | 12 | 553 | 63 | 604 | 1.22e-62 | 221 |
| Msa1387040 | AT1G10240.1 | 28.850 | 565 | 356 | 15 | 12 | 553 | 63 | 604 | 1.22e-62 | 221 |
| Msa1387040 | AT5G28530.3 | 25.829 | 573 | 386 | 18 | 3 | 554 | 61 | 615 | 8.75e-45 | 171 |
| Msa1387040 | AT5G28530.2 | 25.829 | 573 | 386 | 18 | 3 | 554 | 61 | 615 | 8.75e-45 | 171 |
| Msa1387040 | AT5G28530.1 | 25.997 | 577 | 384 | 19 | 3 | 554 | 61 | 619 | 1.01e-44 | 171 |
| Msa1387040 | AT5G28530.5 | 24.645 | 564 | 341 | 21 | 3 | 554 | 61 | 552 | 3.21e-28 | 120 |
| Msa1387040 | AT5G28530.4 | 24.824 | 568 | 339 | 22 | 3 | 554 | 61 | 556 | 3.98e-28 | 120 |
Find 108 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTATTTGAGTTTAA+AGG | 0.175567 | tig0020873:+103405 | Msa1387040:CDS |
| ATTGCTTGTGTAAGTCATTT+TGG | 0.210894 | tig0020873:+103165 | Msa1387040:CDS |
| TCACGGTCAATCTGTGTTAT+TGG | 0.210970 | tig0020873:+102579 | Msa1387040:CDS |
| CACCATCTATGACGGGCTTT+TGG | 0.212782 | tig0020873:-102745 | None:intergenic |
| CTTATGGCATTTAATGAAAA+AGG | 0.217940 | tig0020873:+102768 | Msa1387040:CDS |
| GCCGTTTAAGAAATGTATTC+TGG | 0.225017 | tig0020873:+102440 | Msa1387040:CDS |
| TTAACTTCTTCTATGATAAT+AGG | 0.259140 | tig0020873:-103711 | None:intergenic |
| CAATACTTCATTTGAAGAAT+TGG | 0.263521 | tig0020873:+103269 | Msa1387040:CDS |
| AAGGAAAGCAGGGCTGATTT+TGG | 0.269315 | tig0020873:+103126 | Msa1387040:CDS |
| TTGGGCTAAGGCCATGATTA+TGG | 0.275986 | tig0020873:-102126 | None:intergenic |
| AAGCACCGAAGAGGAGTTAT+TGG | 0.292941 | tig0020873:+103632 | Msa1387040:CDS |
| TGTAGAAGCAACTTCATAAA+AGG | 0.295071 | tig0020873:-103604 | None:intergenic |
| AAATCAAGCGTCTAGAATTC+TGG | 0.299260 | tig0020873:+103743 | Msa1387040:CDS |
| CTTTAGATGTAACAAGAATA+TGG | 0.300326 | tig0020873:+102162 | Msa1387040:CDS |
| CTAAAGTACCGTGCCTTGTT+TGG | 0.309171 | tig0020873:-102145 | None:intergenic |
| TGTATGTGAGGGACGTGTTT+TGG | 0.313235 | tig0020873:+102977 | Msa1387040:CDS |
| ATATGGGGTCTCACATAAAA+AGG | 0.316365 | tig0020873:+102179 | Msa1387040:CDS |
| TCAGGATAAGGCAATGAAAA+AGG | 0.353873 | tig0020873:+102705 | Msa1387040:CDS |
| CACGGTCAATCTGTGTTATT+GGG | 0.357694 | tig0020873:+102580 | Msa1387040:CDS |
| CTTATCCTGATCAGTAATAA+TGG | 0.365698 | tig0020873:-102692 | None:intergenic |
| TATGCTCGACGTATGGGTTT+CGG | 0.385909 | tig0020873:+101905 | Msa1387040:CDS |
| CCCAGAATACATTTCTTAAA+CGG | 0.386877 | tig0020873:-102441 | None:intergenic |
| GTTATAAAGAAGAAGATTGC+AGG | 0.390821 | tig0020873:+103831 | Msa1387040:CDS |
| TAAAGTACCGTGCCTTGTTT+GGG | 0.391492 | tig0020873:-102144 | None:intergenic |
| AGTTATTGGAAGTGATGAAT+TGG | 0.394248 | tig0020873:+103646 | Msa1387040:CDS |
| CCCGTAGTGGCTAGAGGAAA+AGG | 0.404206 | tig0020873:+103768 | Msa1387040:CDS |
| AAATGCCATTATTACTGATC+AGG | 0.420229 | tig0020873:+102687 | Msa1387040:CDS |
| CTCTGTGTGCTTAAACTCTC+TGG | 0.422787 | tig0020873:+103447 | Msa1387040:CDS |
| ACTGAATGCATGTATATGTT+TGG | 0.428371 | tig0020873:+102069 | Msa1387040:CDS |
| AGCAAAAGATGTGGTATTCA+AGG | 0.430318 | tig0020873:+103344 | Msa1387040:CDS |
| ATTTGATGAGCGACATCGTT+GGG | 0.432459 | tig0020873:+102948 | Msa1387040:CDS |
| TGATCAGTAATAATGGCATT+TGG | 0.436971 | tig0020873:-102685 | None:intergenic |
| TGATGATTTACTCCAACAAA+AGG | 0.437844 | tig0020873:-102559 | None:intergenic |
| TTTAGATGTAACAAGAATAT+GGG | 0.441345 | tig0020873:+102163 | Msa1387040:CDS |
| TCCCAAAAGCCCGTCATAGA+TGG | 0.444126 | tig0020873:+102743 | Msa1387040:CDS |
| TCCATGGTTGTTGAAGCAAA+TGG | 0.444231 | tig0020873:+102253 | Msa1387040:CDS |
| ATTAAATGTGGTAACTTGAC+TGG | 0.448404 | tig0020873:+103543 | Msa1387040:CDS |
| CATGAATTATGCTCGACGTA+TGG | 0.448690 | tig0020873:+101898 | Msa1387040:CDS |
| AGGTCAGGCGGCTAAGGCTT+GGG | 0.449234 | tig0020873:+102326 | Msa1387040:CDS |
| AAGGTCAGGCGGCTAAGGCT+TGG | 0.449609 | tig0020873:+102325 | Msa1387040:CDS |
| CATGATAATGAATGGTTGAA+AGG | 0.452443 | tig0020873:+102922 | Msa1387040:CDS |
| ATGATAATGAATGGTTGAAA+GGG | 0.468007 | tig0020873:+102923 | Msa1387040:CDS |
| CCGTTTAAGAAATGTATTCT+GGG | 0.474263 | tig0020873:+102441 | Msa1387040:CDS |
| GAAACTATATAGACAAGGTC+AGG | 0.479084 | tig0020873:+102311 | Msa1387040:CDS |
| CCCGTCATAGATGGTGCTTA+TGG | 0.481914 | tig0020873:+102752 | Msa1387040:CDS |
| ATGAATTATGCTCGACGTAT+GGG | 0.482988 | tig0020873:+101899 | Msa1387040:CDS |
| ATATTTGTTTGTTAAATAAG+TGG | 0.483824 | tig0020873:-102521 | None:intergenic |
| ACTTTAGCATGTAGTCGTGC+AGG | 0.485304 | tig0020873:+101977 | Msa1387040:CDS |
| TACTTCATTTGAAGAATTGG+TGG | 0.485590 | tig0020873:+103272 | Msa1387040:CDS |
| GTAGTTACAAGTGTTACTCT+TGG | 0.485901 | tig0020873:+102103 | Msa1387040:CDS |
| CTAGCATTAAAACACAATGT+AGG | 0.486737 | tig0020873:+102041 | Msa1387040:CDS |
| GATGATTTACTCCAACAAAA+GGG | 0.488733 | tig0020873:-102558 | None:intergenic |
| CCATGGTTGTTGAAGCAAAT+GGG | 0.489569 | tig0020873:+102254 | Msa1387040:CDS |
| CACTTCCAATAACTCCTCTT+CGG | 0.491911 | tig0020873:-103637 | None:intergenic |
| CATTATTACTGATCAGGATA+AGG | 0.492137 | tig0020873:+102693 | Msa1387040:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.494704 | tig0020873:+102274 | Msa1387040:CDS |
| ACTCCAACAAAAGGGGCAAA+AGG | 0.494706 | tig0020873:-102550 | None:intergenic |
| GTTACTCTTGGCCATAATCA+TGG | 0.497383 | tig0020873:+102115 | Msa1387040:CDS |
| ATAAGATTGAAAAGGAAAGC+AGG | 0.500957 | tig0020873:+103115 | Msa1387040:CDS |
| AGGCGGCTAAGGCTTGGGAC+AGG | 0.506657 | tig0020873:+102331 | Msa1387040:CDS |
| TAGACAAGGTCAGGCGGCTA+AGG | 0.507073 | tig0020873:+102320 | Msa1387040:CDS |
| ACCGTGCCTTGTTTGGGCTA+AGG | 0.513773 | tig0020873:-102138 | None:intergenic |
| AATTTGTCAAAGTTCAAAAG+AGG | 0.516865 | tig0020873:+103884 | Msa1387040:CDS |
| TAGCATTAAAACACAATGTA+GGG | 0.517008 | tig0020873:+102042 | Msa1387040:CDS |
| TCTGGGCAGATGCAAGATGT+AGG | 0.517224 | tig0020873:+102458 | Msa1387040:CDS |
| ATTGAAAGATAAGATTGAAA+AGG | 0.518395 | tig0020873:+103107 | Msa1387040:CDS |
| GACATTTAGCTCGGAAGCGG+AGG | 0.538522 | tig0020873:+101862 | Msa1387040:CDS |
| GCATGGTTAGAATGCATGTA+TGG | 0.542778 | tig0020873:+102655 | Msa1387040:CDS |
| CCCATTTGCTTCAACAACCA+TGG | 0.544932 | tig0020873:-102254 | None:intergenic |
| GGAAGTGATGAATTGGATCA+AGG | 0.545110 | tig0020873:+103653 | Msa1387040:CDS |
| TACTGAAATGACATTTAGCT+CGG | 0.553939 | tig0020873:+101853 | None:intergenic |
| CTGGGCAGATGCAAGATGTA+GGG | 0.554233 | tig0020873:+102459 | Msa1387040:CDS |
| GCCATAAGCACCATCTATGA+CGG | 0.557023 | tig0020873:-102753 | None:intergenic |
| CCGTAGTGGCTAGAGGAAAA+GGG | 0.567286 | tig0020873:+103769 | Msa1387040:CDS |
| AATGCATGTATATGTTTGGA+TGG | 0.568180 | tig0020873:+102073 | Msa1387040:CDS |
| CCATAAGCACCATCTATGAC+GGG | 0.570872 | tig0020873:-102752 | None:intergenic |
| ACTTCATTTGAAGAATTGGT+GGG | 0.572053 | tig0020873:+103273 | Msa1387040:CDS |
| GCGCCCTCCTTCAAAACGAA+AGG | 0.577527 | tig0020873:+103791 | Msa1387040:CDS |
| AATGACATTTAGCTCGGAAG+CGG | 0.579804 | tig0020873:+101859 | None:intergenic |
| AGCATAATTCATGTAATACA+AGG | 0.583901 | tig0020873:-101888 | None:intergenic |
| TCGCTGTGTAGTTGACATCC+CGG | 0.586566 | tig0020873:-103001 | None:intergenic |
| CGACATACACTTATTAAATG+TGG | 0.586905 | tig0020873:+103531 | Msa1387040:CDS |
| TAAGATTGAAAAGGAAAGCA+GGG | 0.588196 | tig0020873:+103116 | Msa1387040:CDS |
| TAACCATGCGGTGAATAACC+AGG | 0.590885 | tig0020873:-102641 | None:intergenic |
| CTGGATCCCGTAGTGGCTAG+AGG | 0.596726 | tig0020873:+103762 | Msa1387040:CDS |
| TTAGAGATTAATGATCAAGC+AGG | 0.597773 | tig0020873:+102205 | Msa1387040:CDS |
| TTACCTGGTTATTCACCGCA+TGG | 0.601287 | tig0020873:+102638 | Msa1387040:CDS |
| TACAGAGATAAGCACCGAAG+AGG | 0.602848 | tig0020873:+103623 | Msa1387040:CDS |
| AACACGTCCCTCACATACAC+AGG | 0.605724 | tig0020873:-102973 | None:intergenic |
| GCCTTAGCCCAAACAAGGCA+CGG | 0.608538 | tig0020873:+102137 | Msa1387040:CDS |
| TCATGGCCTTAGCCCAAACA+AGG | 0.608595 | tig0020873:+102132 | Msa1387040:CDS |
| ATGAGCTACATGATAATGAA+TGG | 0.609646 | tig0020873:+102914 | Msa1387040:CDS |
| AGGGCTGCATATGAATACTT+TGG | 0.613424 | tig0020873:+102478 | Msa1387040:CDS |
| ATGATTTACTCCAACAAAAG+GGG | 0.614284 | tig0020873:-102557 | None:intergenic |
| AAAGTGATTTCGTAGAGAGG+TGG | 0.617973 | tig0020873:+102872 | Msa1387040:CDS |
| AATGTTGAGTTACAGCGTGT+TGG | 0.628256 | tig0020873:+103567 | Msa1387040:CDS |
| TATTTGATGAGCGACATCGT+TGG | 0.630399 | tig0020873:+102947 | Msa1387040:CDS |
| TTTGTTGGAGTAAATCATCA+CGG | 0.639777 | tig0020873:+102562 | Msa1387040:CDS |
| TAGAATTCTGGATCCCGTAG+TGG | 0.639964 | tig0020873:+103755 | Msa1387040:CDS |
| GTTGGGTTCCTGTGTATGTG+AGG | 0.643514 | tig0020873:+102965 | Msa1387040:CDS |
| TTAGATGTAACAAGAATATG+GGG | 0.645113 | tig0020873:+102164 | Msa1387040:CDS |
| GCAAAAGTGATTTCGTAGAG+AGG | 0.653770 | tig0020873:+102869 | Msa1387040:CDS |
| TTGGGTTCCTGTGTATGTGA+GGG | 0.656328 | tig0020873:+102966 | Msa1387040:CDS |
| ACTATATAGACAAGGTCAGG+CGG | 0.657287 | tig0020873:+102314 | Msa1387040:CDS |
| CTGTAGAAACTATATAGACA+AGG | 0.659640 | tig0020873:+102306 | Msa1387040:CDS |
| ATACGACAAAGCAAAAGATG+TGG | 0.673334 | tig0020873:+103335 | Msa1387040:CDS |
| TTGTGCACTCTTATCACATG+AGG | 0.680978 | tig0020873:+102603 | Msa1387040:CDS |
| ATACATGCATTCTAACCATG+CGG | 0.735598 | tig0020873:-102653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGTTTGTTAAATAAG+TGG | - | tig0020873:102524-102543 | None:intergenic | 15.0% |
| !!! | ATATTTGTTTGTTAAATAAG+TGG | - | tig0020873:102524-102543 | None:intergenic | 15.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | + | tig0020873:101932-101951 | Msa1387040:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | + | tig0020873:102163-102182 | Msa1387040:CDS | 20.0% |
| !!! | TAGTCAGTTTTATTATGTAA+TGG | + | tig0020873:102402-102421 | Msa1387040:CDS | 20.0% |
| !!! | AGTATGAATTCATTTTTTGA+TGG | + | tig0020873:103030-103049 | Msa1387040:CDS | 20.0% |
| !!! | GTATGAATTCATTTTTTGAT+GGG | + | tig0020873:103031-103050 | Msa1387040:CDS | 20.0% |
| !! | ATTGAAAGATAAGATTGAAA+AGG | + | tig0020873:103107-103126 | Msa1387040:CDS | 20.0% |
| !! | TGAGAAAAAATATAATGAGA+TGG | - | tig0020873:103489-103508 | None:intergenic | 20.0% |
| !! | TTAACTTCTTCTATGATAAT+AGG | - | tig0020873:103714-103733 | None:intergenic | 20.0% |
| !!! | TTTGACAAATTGTTCTTTTT+TGG | - | tig0020873:103875-103894 | None:intergenic | 20.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | + | tig0020873:101932-101951 | Msa1387040:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | + | tig0020873:102163-102182 | Msa1387040:CDS | 20.0% |
| !!! | TAGTCAGTTTTATTATGTAA+TGG | + | tig0020873:102402-102421 | Msa1387040:CDS | 20.0% |
| !!! | AGTATGAATTCATTTTTTGA+TGG | + | tig0020873:103030-103049 | Msa1387040:CDS | 20.0% |
| !!! | GTATGAATTCATTTTTTGAT+GGG | + | tig0020873:103031-103050 | Msa1387040:CDS | 20.0% |
| !! | ATTGAAAGATAAGATTGAAA+AGG | + | tig0020873:103107-103126 | Msa1387040:CDS | 20.0% |
| !! | TGAGAAAAAATATAATGAGA+TGG | - | tig0020873:103489-103508 | None:intergenic | 20.0% |
| !! | TTAACTTCTTCTATGATAAT+AGG | - | tig0020873:103714-103733 | None:intergenic | 20.0% |
| !!! | TTTGACAAATTGTTCTTTTT+TGG | - | tig0020873:103875-103894 | None:intergenic | 20.0% |
| ! | AGCATAATTCATGTAATACA+AGG | - | tig0020873:101891-101910 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | + | tig0020873:102042-102061 | Msa1387040:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | + | tig0020873:102162-102181 | Msa1387040:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | + | tig0020873:102164-102183 | Msa1387040:CDS | 25.0% |
| !!! | GTTTTATTATGTAATGGATG+TGG | + | tig0020873:102408-102427 | Msa1387040:CDS | 25.0% |
| ! | CTTATGGCATTTAATGAAAA+AGG | + | tig0020873:102768-102787 | Msa1387040:CDS | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | + | tig0020873:102923-102942 | Msa1387040:CDS | 25.0% |
| ! | CAATACTTCATTTGAAGAAT+TGG | + | tig0020873:103269-103288 | Msa1387040:CDS | 25.0% |
| !!! | CTCATTATATTTTTTCTCAG+TGG | + | tig0020873:103490-103509 | Msa1387040:CDS | 25.0% |
| !!! | ATTATATTTTTTCTCAGTGG+AGG | + | tig0020873:103493-103512 | Msa1387040:CDS | 25.0% |
| ! | AATTTGTCAAAGTTCAAAAG+AGG | + | tig0020873:103884-103903 | Msa1387040:CDS | 25.0% |
| ! | AGCATAATTCATGTAATACA+AGG | - | tig0020873:101891-101910 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | + | tig0020873:102042-102061 | Msa1387040:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | + | tig0020873:102162-102181 | Msa1387040:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | + | tig0020873:102164-102183 | Msa1387040:CDS | 25.0% |
| !!! | GTTTTATTATGTAATGGATG+TGG | + | tig0020873:102408-102427 | Msa1387040:CDS | 25.0% |
| ! | CTTATGGCATTTAATGAAAA+AGG | + | tig0020873:102768-102787 | Msa1387040:CDS | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | + | tig0020873:102923-102942 | Msa1387040:CDS | 25.0% |
| ! | CAATACTTCATTTGAAGAAT+TGG | + | tig0020873:103269-103288 | Msa1387040:CDS | 25.0% |
| !!! | CTCATTATATTTTTTCTCAG+TGG | + | tig0020873:103490-103509 | Msa1387040:CDS | 25.0% |
| !!! | ATTATATTTTTTCTCAGTGG+AGG | + | tig0020873:103493-103512 | Msa1387040:CDS | 25.0% |
| ! | AATTTGTCAAAGTTCAAAAG+AGG | + | tig0020873:103884-103903 | Msa1387040:CDS | 25.0% |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | - | tig0020873:102037-102056 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | + | tig0020873:102041-102060 | Msa1387040:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | + | tig0020873:102069-102088 | Msa1387040:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | + | tig0020873:102073-102092 | Msa1387040:CDS | 30.0% | |
| TTAGAGATTAATGATCAAGC+AGG | + | tig0020873:102205-102224 | Msa1387040:CDS | 30.0% | |
| ! | CAGTAGAAATTTTAGATCCA+TGG | + | tig0020873:102237-102256 | Msa1387040:CDS | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | + | tig0020873:102306-102325 | Msa1387040:CDS | 30.0% | |
| CCCAGAATACATTTCTTAAA+CGG | - | tig0020873:102444-102463 | None:intergenic | 30.0% | |
| CCGTTTAAGAAATGTATTCT+GGG | + | tig0020873:102441-102460 | Msa1387040:CDS | 30.0% | |
| ATGATTTACTCCAACAAAAG+GGG | - | tig0020873:102560-102579 | None:intergenic | 30.0% | |
| GATGATTTACTCCAACAAAA+GGG | - | tig0020873:102561-102580 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | - | tig0020873:102562-102581 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | + | tig0020873:102562-102581 | Msa1387040:CDS | 30.0% | |
| TGATCAGTAATAATGGCATT+TGG | - | tig0020873:102688-102707 | None:intergenic | 30.0% | |
| AAATGCCATTATTACTGATC+AGG | + | tig0020873:102687-102706 | Msa1387040:CDS | 30.0% | |
| CTTATCCTGATCAGTAATAA+TGG | - | tig0020873:102695-102714 | None:intergenic | 30.0% | |
| CATTATTACTGATCAGGATA+AGG | + | tig0020873:102693-102712 | Msa1387040:CDS | 30.0% | |
| !! | AAAAAGGTACCTGAAAAGTT+TGG | + | tig0020873:102784-102803 | Msa1387040:CDS | 30.0% |
| ! | GAGTATTTACCAAACTTTTC+AGG | - | tig0020873:102796-102815 | None:intergenic | 30.0% |
| ! | ATGAGCTACATGATAATGAA+TGG | + | tig0020873:102914-102933 | Msa1387040:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | + | tig0020873:102922-102941 | Msa1387040:CDS | 30.0% |
| ATAAGATTGAAAAGGAAAGC+AGG | + | tig0020873:103115-103134 | Msa1387040:CDS | 30.0% | |
| TAAGATTGAAAAGGAAAGCA+GGG | + | tig0020873:103116-103135 | Msa1387040:CDS | 30.0% | |
| ! | ATTGCTTGTGTAAGTCATTT+TGG | + | tig0020873:103165-103184 | Msa1387040:CDS | 30.0% |
| !! | TTGCGTTGGTAAATGATTTT+TGG | - | tig0020873:103206-103225 | None:intergenic | 30.0% |
| ! | AAATTCTCTGAATTTTGCGT+TGG | - | tig0020873:103220-103239 | None:intergenic | 30.0% |
| TACTTCATTTGAAGAATTGG+TGG | + | tig0020873:103272-103291 | Msa1387040:CDS | 30.0% | |
| ACTTCATTTGAAGAATTGGT+GGG | + | tig0020873:103273-103292 | Msa1387040:CDS | 30.0% | |
| !! | CTCAAAGTCTTTTTCATTGT+AGG | - | tig0020873:103373-103392 | None:intergenic | 30.0% |
| ! | TGCTGCTTATTTGAGTTTAA+AGG | + | tig0020873:103405-103424 | Msa1387040:CDS | 30.0% |
| CGACATACACTTATTAAATG+TGG | + | tig0020873:103531-103550 | Msa1387040:CDS | 30.0% | |
| ATTAAATGTGGTAACTTGAC+TGG | + | tig0020873:103543-103562 | Msa1387040:CDS | 30.0% | |
| TGTAGAAGCAACTTCATAAA+AGG | - | tig0020873:103607-103626 | None:intergenic | 30.0% | |
| AGTTATTGGAAGTGATGAAT+TGG | + | tig0020873:103646-103665 | Msa1387040:CDS | 30.0% | |
| GTTATAAAGAAGAAGATTGC+AGG | + | tig0020873:103831-103850 | Msa1387040:CDS | 30.0% | |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | - | tig0020873:102037-102056 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | + | tig0020873:102041-102060 | Msa1387040:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | + | tig0020873:102069-102088 | Msa1387040:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | + | tig0020873:102073-102092 | Msa1387040:CDS | 30.0% | |
| TTAGAGATTAATGATCAAGC+AGG | + | tig0020873:102205-102224 | Msa1387040:CDS | 30.0% | |
| ! | CAGTAGAAATTTTAGATCCA+TGG | + | tig0020873:102237-102256 | Msa1387040:CDS | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | + | tig0020873:102306-102325 | Msa1387040:CDS | 30.0% | |
| CCCAGAATACATTTCTTAAA+CGG | - | tig0020873:102444-102463 | None:intergenic | 30.0% | |
| CCGTTTAAGAAATGTATTCT+GGG | + | tig0020873:102441-102460 | Msa1387040:CDS | 30.0% | |
| ATGATTTACTCCAACAAAAG+GGG | - | tig0020873:102560-102579 | None:intergenic | 30.0% | |
| GATGATTTACTCCAACAAAA+GGG | - | tig0020873:102561-102580 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | - | tig0020873:102562-102581 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | + | tig0020873:102562-102581 | Msa1387040:CDS | 30.0% | |
| TGATCAGTAATAATGGCATT+TGG | - | tig0020873:102688-102707 | None:intergenic | 30.0% | |
| AAATGCCATTATTACTGATC+AGG | + | tig0020873:102687-102706 | Msa1387040:CDS | 30.0% | |
| CTTATCCTGATCAGTAATAA+TGG | - | tig0020873:102695-102714 | None:intergenic | 30.0% | |
| CATTATTACTGATCAGGATA+AGG | + | tig0020873:102693-102712 | Msa1387040:CDS | 30.0% | |
| !! | AAAAAGGTACCTGAAAAGTT+TGG | + | tig0020873:102784-102803 | Msa1387040:CDS | 30.0% |
| ! | GAGTATTTACCAAACTTTTC+AGG | - | tig0020873:102796-102815 | None:intergenic | 30.0% |
| ! | ATGAGCTACATGATAATGAA+TGG | + | tig0020873:102914-102933 | Msa1387040:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | + | tig0020873:102922-102941 | Msa1387040:CDS | 30.0% |
| ATAAGATTGAAAAGGAAAGC+AGG | + | tig0020873:103115-103134 | Msa1387040:CDS | 30.0% | |
| TAAGATTGAAAAGGAAAGCA+GGG | + | tig0020873:103116-103135 | Msa1387040:CDS | 30.0% | |
| ! | ATTGCTTGTGTAAGTCATTT+TGG | + | tig0020873:103165-103184 | Msa1387040:CDS | 30.0% |
| !! | TTGCGTTGGTAAATGATTTT+TGG | - | tig0020873:103206-103225 | None:intergenic | 30.0% |
| ! | AAATTCTCTGAATTTTGCGT+TGG | - | tig0020873:103220-103239 | None:intergenic | 30.0% |
| TACTTCATTTGAAGAATTGG+TGG | + | tig0020873:103272-103291 | Msa1387040:CDS | 30.0% | |
| ACTTCATTTGAAGAATTGGT+GGG | + | tig0020873:103273-103292 | Msa1387040:CDS | 30.0% | |
| !! | CTCAAAGTCTTTTTCATTGT+AGG | - | tig0020873:103373-103392 | None:intergenic | 30.0% |
| ! | TGCTGCTTATTTGAGTTTAA+AGG | + | tig0020873:103405-103424 | Msa1387040:CDS | 30.0% |
| CGACATACACTTATTAAATG+TGG | + | tig0020873:103531-103550 | Msa1387040:CDS | 30.0% | |
| ATTAAATGTGGTAACTTGAC+TGG | + | tig0020873:103543-103562 | Msa1387040:CDS | 30.0% | |
| TGTAGAAGCAACTTCATAAA+AGG | - | tig0020873:103607-103626 | None:intergenic | 30.0% | |
| AGTTATTGGAAGTGATGAAT+TGG | + | tig0020873:103646-103665 | Msa1387040:CDS | 30.0% | |
| GTTATAAAGAAGAAGATTGC+AGG | + | tig0020873:103831-103850 | Msa1387040:CDS | 30.0% | |
| ATGAATTATGCTCGACGTAT+GGG | + | tig0020873:101899-101918 | Msa1387040:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | + | tig0020873:101941-101960 | Msa1387040:CDS | 35.0% | |
| ! | GTAGTTACAAGTGTTACTCT+TGG | + | tig0020873:102103-102122 | Msa1387040:CDS | 35.0% |
| ATATGGGGTCTCACATAAAA+AGG | + | tig0020873:102179-102198 | Msa1387040:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | + | tig0020873:102311-102330 | Msa1387040:CDS | 35.0% | |
| GCCGTTTAAGAAATGTATTC+TGG | + | tig0020873:102440-102459 | Msa1387040:CDS | 35.0% | |
| ! | AGGATGCTAAAACTTTTACC+TGG | + | tig0020873:102623-102642 | Msa1387040:CDS | 35.0% |
| ATACATGCATTCTAACCATG+CGG | - | tig0020873:102656-102675 | None:intergenic | 35.0% | |
| TCAGGATAAGGCAATGAAAA+AGG | + | tig0020873:102705-102724 | Msa1387040:CDS | 35.0% | |
| ATACGACAAAGCAAAAGATG+TGG | + | tig0020873:103335-103354 | Msa1387040:CDS | 35.0% | |
| AGCAAAAGATGTGGTATTCA+AGG | + | tig0020873:103344-103363 | Msa1387040:CDS | 35.0% | |
| !!! | TATTTTTTCTCAGTGGAGGA+AGG | + | tig0020873:103497-103516 | Msa1387040:CDS | 35.0% |
| ! | AAATCAAGCGTCTAGAATTC+TGG | + | tig0020873:103743-103762 | Msa1387040:CDS | 35.0% |
| ! | ATAGAAGCCTTTCGTTTTGA+AGG | - | tig0020873:103801-103820 | None:intergenic | 35.0% |
| ATGAATTATGCTCGACGTAT+GGG | + | tig0020873:101899-101918 | Msa1387040:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | + | tig0020873:101941-101960 | Msa1387040:CDS | 35.0% | |
| ! | GTAGTTACAAGTGTTACTCT+TGG | + | tig0020873:102103-102122 | Msa1387040:CDS | 35.0% |
| ATATGGGGTCTCACATAAAA+AGG | + | tig0020873:102179-102198 | Msa1387040:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | + | tig0020873:102311-102330 | Msa1387040:CDS | 35.0% | |
| GCCGTTTAAGAAATGTATTC+TGG | + | tig0020873:102440-102459 | Msa1387040:CDS | 35.0% | |
| ! | AGGATGCTAAAACTTTTACC+TGG | + | tig0020873:102623-102642 | Msa1387040:CDS | 35.0% |
| ATACATGCATTCTAACCATG+CGG | - | tig0020873:102656-102675 | None:intergenic | 35.0% | |
| TCAGGATAAGGCAATGAAAA+AGG | + | tig0020873:102705-102724 | Msa1387040:CDS | 35.0% | |
| ATACGACAAAGCAAAAGATG+TGG | + | tig0020873:103335-103354 | Msa1387040:CDS | 35.0% | |
| AGCAAAAGATGTGGTATTCA+AGG | + | tig0020873:103344-103363 | Msa1387040:CDS | 35.0% | |
| !!! | TATTTTTTCTCAGTGGAGGA+AGG | + | tig0020873:103497-103516 | Msa1387040:CDS | 35.0% |
| ! | AAATCAAGCGTCTAGAATTC+TGG | + | tig0020873:103743-103762 | Msa1387040:CDS | 35.0% |
| ! | ATAGAAGCCTTTCGTTTTGA+AGG | - | tig0020873:103801-103820 | None:intergenic | 35.0% |
| CATGAATTATGCTCGACGTA+TGG | + | tig0020873:101898-101917 | Msa1387040:CDS | 40.0% | |
| GTTACTCTTGGCCATAATCA+TGG | + | tig0020873:102115-102134 | Msa1387040:CDS | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | - | tig0020873:102147-102166 | None:intergenic | 40.0% |
| TCCATGGTTGTTGAAGCAAA+TGG | + | tig0020873:102253-102272 | Msa1387040:CDS | 40.0% | |
| CCATGGTTGTTGAAGCAAAT+GGG | + | tig0020873:102254-102273 | Msa1387040:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | + | tig0020873:102274-102293 | Msa1387040:CDS | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | + | tig0020873:102314-102333 | Msa1387040:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | + | tig0020873:102478-102497 | Msa1387040:CDS | 40.0% | |
| TCACGGTCAATCTGTGTTAT+TGG | + | tig0020873:102579-102598 | Msa1387040:CDS | 40.0% | |
| ! | CACGGTCAATCTGTGTTATT+GGG | + | tig0020873:102580-102599 | Msa1387040:CDS | 40.0% |
| TTGTGCACTCTTATCACATG+AGG | + | tig0020873:102603-102622 | Msa1387040:CDS | 40.0% | |
| GCATGGTTAGAATGCATGTA+TGG | + | tig0020873:102655-102674 | Msa1387040:CDS | 40.0% | |
| GCAAAAGTGATTTCGTAGAG+AGG | + | tig0020873:102869-102888 | Msa1387040:CDS | 40.0% | |
| AAAGTGATTTCGTAGAGAGG+TGG | + | tig0020873:102872-102891 | Msa1387040:CDS | 40.0% | |
| TATTTGATGAGCGACATCGT+TGG | + | tig0020873:102947-102966 | Msa1387040:CDS | 40.0% | |
| ATTTGATGAGCGACATCGTT+GGG | + | tig0020873:102948-102967 | Msa1387040:CDS | 40.0% | |
| AATGTTGAGTTACAGCGTGT+TGG | + | tig0020873:103567-103586 | Msa1387040:CDS | 40.0% | |
| CACTTCCAATAACTCCTCTT+CGG | - | tig0020873:103640-103659 | None:intergenic | 40.0% | |
| GGAAGTGATGAATTGGATCA+AGG | + | tig0020873:103653-103672 | Msa1387040:CDS | 40.0% | |
| !!! | AAGCCTTTCGTTTTGAAGGA+GGG | - | tig0020873:103797-103816 | None:intergenic | 40.0% |
| CATGAATTATGCTCGACGTA+TGG | + | tig0020873:101898-101917 | Msa1387040:CDS | 40.0% | |
| GTTACTCTTGGCCATAATCA+TGG | + | tig0020873:102115-102134 | Msa1387040:CDS | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | - | tig0020873:102147-102166 | None:intergenic | 40.0% |
| TCCATGGTTGTTGAAGCAAA+TGG | + | tig0020873:102253-102272 | Msa1387040:CDS | 40.0% | |
| CCATGGTTGTTGAAGCAAAT+GGG | + | tig0020873:102254-102273 | Msa1387040:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | + | tig0020873:102274-102293 | Msa1387040:CDS | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | + | tig0020873:102314-102333 | Msa1387040:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | + | tig0020873:102478-102497 | Msa1387040:CDS | 40.0% | |
| TCACGGTCAATCTGTGTTAT+TGG | + | tig0020873:102579-102598 | Msa1387040:CDS | 40.0% | |
| ! | CACGGTCAATCTGTGTTATT+GGG | + | tig0020873:102580-102599 | Msa1387040:CDS | 40.0% |
| TTGTGCACTCTTATCACATG+AGG | + | tig0020873:102603-102622 | Msa1387040:CDS | 40.0% | |
| GCATGGTTAGAATGCATGTA+TGG | + | tig0020873:102655-102674 | Msa1387040:CDS | 40.0% | |
| GCAAAAGTGATTTCGTAGAG+AGG | + | tig0020873:102869-102888 | Msa1387040:CDS | 40.0% | |
| AAAGTGATTTCGTAGAGAGG+TGG | + | tig0020873:102872-102891 | Msa1387040:CDS | 40.0% | |
| TATTTGATGAGCGACATCGT+TGG | + | tig0020873:102947-102966 | Msa1387040:CDS | 40.0% | |
| ATTTGATGAGCGACATCGTT+GGG | + | tig0020873:102948-102967 | Msa1387040:CDS | 40.0% | |
| AATGTTGAGTTACAGCGTGT+TGG | + | tig0020873:103567-103586 | Msa1387040:CDS | 40.0% | |
| CACTTCCAATAACTCCTCTT+CGG | - | tig0020873:103640-103659 | None:intergenic | 40.0% | |
| GGAAGTGATGAATTGGATCA+AGG | + | tig0020873:103653-103672 | Msa1387040:CDS | 40.0% | |
| !!! | AAGCCTTTCGTTTTGAAGGA+GGG | - | tig0020873:103797-103816 | None:intergenic | 40.0% |
| TATGCTCGACGTATGGGTTT+CGG | + | tig0020873:101905-101924 | Msa1387040:CDS | 45.0% | |
| ACTTTAGCATGTAGTCGTGC+AGG | + | tig0020873:101977-101996 | Msa1387040:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | - | tig0020873:102129-102148 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | - | tig0020873:102148-102167 | None:intergenic | 45.0% |
| CCCATTTGCTTCAACAACCA+TGG | - | tig0020873:102257-102276 | None:intergenic | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | + | tig0020873:102547-102566 | Msa1387040:CDS | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | - | tig0020873:102553-102572 | None:intergenic | 45.0% | |
| TTACCTGGTTATTCACCGCA+TGG | + | tig0020873:102638-102657 | Msa1387040:CDS | 45.0% | |
| TAACCATGCGGTGAATAACC+AGG | - | tig0020873:102644-102663 | None:intergenic | 45.0% | |
| GGCAATGAAAAAGGCGATTG+AGG | + | tig0020873:102714-102733 | Msa1387040:CDS | 45.0% | |
| !!! | ACCATCTATGACGGGCTTTT+GGG | - | tig0020873:102747-102766 | None:intergenic | 45.0% |
| CCATAAGCACCATCTATGAC+GGG | - | tig0020873:102755-102774 | None:intergenic | 45.0% | |
| GCCATAAGCACCATCTATGA+CGG | - | tig0020873:102756-102775 | None:intergenic | 45.0% | |
| TTGGGTTCCTGTGTATGTGA+GGG | + | tig0020873:102966-102985 | Msa1387040:CDS | 45.0% | |
| ! | TGTATGTGAGGGACGTGTTT+TGG | + | tig0020873:102977-102996 | Msa1387040:CDS | 45.0% |
| ! | GTATGTGAGGGACGTGTTTT+GGG | + | tig0020873:102978-102997 | Msa1387040:CDS | 45.0% |
| !! | AAGGAAAGCAGGGCTGATTT+TGG | + | tig0020873:103126-103145 | Msa1387040:CDS | 45.0% |
| CTCTGTGTGCTTAAACTCTC+TGG | + | tig0020873:103447-103466 | Msa1387040:CDS | 45.0% | |
| !! | TACAGAGATAAGCACCGAAG+AGG | + | tig0020873:103623-103642 | Msa1387040:CDS | 45.0% |
| !! | AAGCACCGAAGAGGAGTTAT+TGG | + | tig0020873:103632-103651 | Msa1387040:CDS | 45.0% |
| TAGAATTCTGGATCCCGTAG+TGG | + | tig0020873:103755-103774 | Msa1387040:CDS | 45.0% | |
| !!! | GAAGCCTTTCGTTTTGAAGG+AGG | - | tig0020873:103798-103817 | None:intergenic | 45.0% |
| TATGCTCGACGTATGGGTTT+CGG | + | tig0020873:101905-101924 | Msa1387040:CDS | 45.0% | |
| ACTTTAGCATGTAGTCGTGC+AGG | + | tig0020873:101977-101996 | Msa1387040:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | - | tig0020873:102129-102148 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | - | tig0020873:102148-102167 | None:intergenic | 45.0% |
| CCCATTTGCTTCAACAACCA+TGG | - | tig0020873:102257-102276 | None:intergenic | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | + | tig0020873:102547-102566 | Msa1387040:CDS | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | - | tig0020873:102553-102572 | None:intergenic | 45.0% | |
| TTACCTGGTTATTCACCGCA+TGG | + | tig0020873:102638-102657 | Msa1387040:CDS | 45.0% | |
| TAACCATGCGGTGAATAACC+AGG | - | tig0020873:102644-102663 | None:intergenic | 45.0% | |
| GGCAATGAAAAAGGCGATTG+AGG | + | tig0020873:102714-102733 | Msa1387040:CDS | 45.0% | |
| !!! | ACCATCTATGACGGGCTTTT+GGG | - | tig0020873:102747-102766 | None:intergenic | 45.0% |
| CCATAAGCACCATCTATGAC+GGG | - | tig0020873:102755-102774 | None:intergenic | 45.0% | |
| GCCATAAGCACCATCTATGA+CGG | - | tig0020873:102756-102775 | None:intergenic | 45.0% | |
| TTGGGTTCCTGTGTATGTGA+GGG | + | tig0020873:102966-102985 | Msa1387040:CDS | 45.0% | |
| ! | TGTATGTGAGGGACGTGTTT+TGG | + | tig0020873:102977-102996 | Msa1387040:CDS | 45.0% |
| ! | GTATGTGAGGGACGTGTTTT+GGG | + | tig0020873:102978-102997 | Msa1387040:CDS | 45.0% |
| !! | AAGGAAAGCAGGGCTGATTT+TGG | + | tig0020873:103126-103145 | Msa1387040:CDS | 45.0% |
| CTCTGTGTGCTTAAACTCTC+TGG | + | tig0020873:103447-103466 | Msa1387040:CDS | 45.0% | |
| !! | TACAGAGATAAGCACCGAAG+AGG | + | tig0020873:103623-103642 | Msa1387040:CDS | 45.0% |
| !! | AAGCACCGAAGAGGAGTTAT+TGG | + | tig0020873:103632-103651 | Msa1387040:CDS | 45.0% |
| TAGAATTCTGGATCCCGTAG+TGG | + | tig0020873:103755-103774 | Msa1387040:CDS | 45.0% | |
| !!! | GAAGCCTTTCGTTTTGAAGG+AGG | - | tig0020873:103798-103817 | None:intergenic | 45.0% |
| ! | TCATGGCCTTAGCCCAAACA+AGG | + | tig0020873:102132-102151 | Msa1387040:CDS | 50.0% |
| TCTGGGCAGATGCAAGATGT+AGG | + | tig0020873:102458-102477 | Msa1387040:CDS | 50.0% | |
| CTGGGCAGATGCAAGATGTA+GGG | + | tig0020873:102459-102478 | Msa1387040:CDS | 50.0% | |
| TCCCAAAAGCCCGTCATAGA+TGG | + | tig0020873:102743-102762 | Msa1387040:CDS | 50.0% | |
| !!! | CACCATCTATGACGGGCTTT+TGG | - | tig0020873:102748-102767 | None:intergenic | 50.0% |
| CCCGTCATAGATGGTGCTTA+TGG | + | tig0020873:102752-102771 | Msa1387040:CDS | 50.0% | |
| GTTGGGTTCCTGTGTATGTG+AGG | + | tig0020873:102965-102984 | Msa1387040:CDS | 50.0% | |
| AACACGTCCCTCACATACAC+AGG | - | tig0020873:102976-102995 | None:intergenic | 50.0% | |
| TCGCTGTGTAGTTGACATCC+CGG | - | tig0020873:103004-103023 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTCTAGCCACTAC+GGG | - | tig0020873:103771-103790 | None:intergenic | 50.0% |
| ! | CCCTTTTCCTCTAGCCACTA+CGG | - | tig0020873:103772-103791 | None:intergenic | 50.0% |
| CCGTAGTGGCTAGAGGAAAA+GGG | + | tig0020873:103769-103788 | Msa1387040:CDS | 50.0% | |
| ! | TCATGGCCTTAGCCCAAACA+AGG | + | tig0020873:102132-102151 | Msa1387040:CDS | 50.0% |
| TCTGGGCAGATGCAAGATGT+AGG | + | tig0020873:102458-102477 | Msa1387040:CDS | 50.0% | |
| CTGGGCAGATGCAAGATGTA+GGG | + | tig0020873:102459-102478 | Msa1387040:CDS | 50.0% | |
| TCCCAAAAGCCCGTCATAGA+TGG | + | tig0020873:102743-102762 | Msa1387040:CDS | 50.0% | |
| !!! | CACCATCTATGACGGGCTTT+TGG | - | tig0020873:102748-102767 | None:intergenic | 50.0% |
| CCCGTCATAGATGGTGCTTA+TGG | + | tig0020873:102752-102771 | Msa1387040:CDS | 50.0% | |
| GTTGGGTTCCTGTGTATGTG+AGG | + | tig0020873:102965-102984 | Msa1387040:CDS | 50.0% | |
| AACACGTCCCTCACATACAC+AGG | - | tig0020873:102976-102995 | None:intergenic | 50.0% | |
| TCGCTGTGTAGTTGACATCC+CGG | - | tig0020873:103004-103023 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTCTAGCCACTAC+GGG | - | tig0020873:103771-103790 | None:intergenic | 50.0% |
| ! | CCCTTTTCCTCTAGCCACTA+CGG | - | tig0020873:103772-103791 | None:intergenic | 50.0% |
| CCGTAGTGGCTAGAGGAAAA+GGG | + | tig0020873:103769-103788 | Msa1387040:CDS | 50.0% | |
| ! | GACATTTAGCTCGGAAGCGG+AGG | + | tig0020873:101862-101881 | Msa1387040:CDS | 55.0% |
| GCCTTAGCCCAAACAAGGCA+CGG | + | tig0020873:102137-102156 | Msa1387040:CDS | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | - | tig0020873:102141-102160 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | + | tig0020873:102320-102339 | Msa1387040:CDS | 55.0% | |
| CCCGTAGTGGCTAGAGGAAA+AGG | + | tig0020873:103768-103787 | Msa1387040:CDS | 55.0% | |
| GCGCCCTCCTTCAAAACGAA+AGG | + | tig0020873:103791-103810 | Msa1387040:CDS | 55.0% | |
| ! | GACATTTAGCTCGGAAGCGG+AGG | + | tig0020873:101862-101881 | Msa1387040:CDS | 55.0% |
| GCCTTAGCCCAAACAAGGCA+CGG | + | tig0020873:102137-102156 | Msa1387040:CDS | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | - | tig0020873:102141-102160 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | + | tig0020873:102320-102339 | Msa1387040:CDS | 55.0% | |
| CCCGTAGTGGCTAGAGGAAA+AGG | + | tig0020873:103768-103787 | Msa1387040:CDS | 55.0% | |
| GCGCCCTCCTTCAAAACGAA+AGG | + | tig0020873:103791-103810 | Msa1387040:CDS | 55.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | + | tig0020873:102325-102344 | Msa1387040:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | + | tig0020873:102326-102345 | Msa1387040:CDS | 60.0% | |
| !! | GTGAGGGACGTGTTTTGGGC+CGG | + | tig0020873:102982-103001 | Msa1387040:CDS | 60.0% |
| !! | TGAGGGACGTGTTTTGGGCC+GGG | + | tig0020873:102983-103002 | Msa1387040:CDS | 60.0% |
| CTGGATCCCGTAGTGGCTAG+AGG | + | tig0020873:103762-103781 | Msa1387040:CDS | 60.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | + | tig0020873:102325-102344 | Msa1387040:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | + | tig0020873:102326-102345 | Msa1387040:CDS | 60.0% | |
| !! | GTGAGGGACGTGTTTTGGGC+CGG | + | tig0020873:102982-103001 | Msa1387040:CDS | 60.0% |
| !! | TGAGGGACGTGTTTTGGGCC+GGG | + | tig0020873:102983-103002 | Msa1387040:CDS | 60.0% |
| CTGGATCCCGTAGTGGCTAG+AGG | + | tig0020873:103762-103781 | Msa1387040:CDS | 60.0% | |
| AGGCGGCTAAGGCTTGGGAC+AGG | + | tig0020873:102331-102350 | Msa1387040:CDS | 65.0% | |
| AGGCGGCTAAGGCTTGGGAC+AGG | + | tig0020873:102331-102350 | Msa1387040:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020873 | gene | 101860 | 103923 | 101860 | ID=Msa1387040;Name=Msa1387040 |
| tig0020873 | mRNA | 101860 | 103923 | 101860 | ID=Msa1387040-mRNA-1;Parent=Msa1387040;Name=Msa1387040-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|687 |
| tig0020873 | exon | 101860 | 103923 | 101860 | ID=Msa1387040-mRNA-1:exon:10423;Parent=Msa1387040-mRNA-1 |
| tig0020873 | CDS | 101860 | 103923 | 101860 | ID=Msa1387040-mRNA-1:cds;Parent=Msa1387040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
