Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189390 | XP_003593129.1 | 97.531 | 486 | 11 | 1 | 1 | 485 | 1 | 486 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189390 | sp|Q9MA74|SDC1_ARATH | 76.591 | 487 | 107 | 3 | 1 | 485 | 1 | 482 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189390 | G7IL92 | 97.531 | 486 | 11 | 1 | 1 | 485 | 1 | 486 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189390 | Msa0189420 | 0.850128 | 2.073831e-60 | -8.615850e-47 |
| Msa0189390 | Msa0309970 | 0.906601 | 1.246177e-80 | -8.615850e-47 |
| Msa0189390 | Msa0309990 | 0.872510 | 3.008572e-67 | -8.615850e-47 |
| Msa0189390 | Msa1212830 | 0.804180 | 2.445118e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189390 | MtrunA17_Chr2g0278631 | 97.531 | 486 | 11 | 1 | 1 | 485 | 1 | 486 | 0.0 | 989 |
| Msa0189390 | MtrunA17_Chr1g0202041 | 62.438 | 402 | 151 | 0 | 83 | 484 | 109 | 510 | 0.0 | 563 |
| Msa0189390 | MtrunA17_Chr4g0039151 | 56.209 | 459 | 186 | 2 | 29 | 485 | 20 | 465 | 0.0 | 550 |
| Msa0189390 | MtrunA17_Chr1g0202091 | 59.753 | 405 | 163 | 0 | 80 | 484 | 52 | 456 | 0.0 | 541 |
| Msa0189390 | MtrunA17_Chr1g0202071 | 61.600 | 375 | 137 | 1 | 110 | 484 | 37 | 404 | 1.35e-179 | 509 |
| Msa0189390 | MtrunA17_Chr1g0202061 | 63.988 | 336 | 121 | 0 | 149 | 484 | 3 | 338 | 2.28e-170 | 483 |
| Msa0189390 | MtrunA17_Chr6g0479491 | 96.429 | 140 | 5 | 0 | 212 | 351 | 1 | 140 | 1.11e-95 | 285 |
| Msa0189390 | MtrunA17_Chr6g0479501 | 99.270 | 137 | 1 | 0 | 1 | 137 | 1 | 137 | 3.65e-94 | 281 |
| Msa0189390 | MtrunA17_Chr4g0039171 | 60.733 | 191 | 75 | 0 | 294 | 484 | 16 | 206 | 1.75e-84 | 259 |
| Msa0189390 | MtrunA17_Chr4g0039161 | 66.038 | 159 | 54 | 0 | 149 | 307 | 3 | 161 | 2.16e-78 | 242 |
| Msa0189390 | MtrunA17_Chr2g0278611 | 96.262 | 107 | 4 | 0 | 374 | 480 | 7 | 113 | 8.27e-71 | 221 |
| Msa0189390 | MtrunA17_Chr6g0479481 | 97.647 | 85 | 2 | 0 | 401 | 485 | 1 | 85 | 3.40e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189390 | AT1G43710.1 | 76.591 | 487 | 107 | 3 | 1 | 485 | 1 | 482 | 0.0 | 783 |
Find 144 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTTGGATTTCGATTA+TGG | 0.126797 | 2_1:+4806959 | Msa0189390:CDS |
| ATTGGCAGTGTAAGTGTTTC+TGG | 0.141024 | 2_1:+4808356 | Msa0189390:CDS |
| TGGATCTCCAAGGTTGTTTA+TGG | 0.175281 | 2_1:-4807008 | None:intergenic |
| GAAAGCCTCTGTATCCTTTC+CGG | 0.211785 | 2_1:-4808541 | None:intergenic |
| CGCAGGCTACCCCTACAATT+TGG | 0.213194 | 2_1:+4806946 | Msa0189390:intron |
| CAAGGTATACCAAAGGAAAA+TGG | 0.240898 | 2_1:-4808516 | None:intergenic |
| GAAAGGACAAAGTATCATTT+AGG | 0.241696 | 2_1:+4806350 | Msa0189390:CDS |
| CACGTTGATGGGGCTTTGTT+TGG | 0.289688 | 2_1:+4807639 | Msa0189390:CDS |
| ACAATCATGGGCAGTCTAAA+TGG | 0.300579 | 2_1:+4808485 | Msa0189390:CDS |
| AGAGAAAAGAGAAATAGTTC+TGG | 0.308912 | 2_1:+4806208 | Msa0189390:CDS |
| GGCTTCTTAAAAGTAACTTT+TGG | 0.313494 | 2_1:-4808332 | None:intergenic |
| CTCTGTTGTGGATAACAAAA+TGG | 0.320166 | 2_1:+4806025 | Msa0189390:exon |
| ATACTTTGTCCTTTCGGTTA+AGG | 0.320246 | 2_1:-4806342 | None:intergenic |
| AAGATTGAGACTCTTAATTC+TGG | 0.327843 | 2_1:+4807359 | Msa0189390:CDS |
| GTCAATGGTTTGAGCACTAA+TGG | 0.335526 | 2_1:+4806068 | Msa0189390:CDS |
| ATGTTCACATTTATAATTGC+CGG | 0.344490 | 2_1:-4807434 | None:intergenic |
| GTAATTTCATCATCTGCTTC+AGG | 0.355673 | 2_1:-4806269 | None:intergenic |
| AGCATATTAATGCTCTTTCC+AGG | 0.361100 | 2_1:+4808432 | Msa0189390:CDS |
| CGCAAGGTATTCCACATTCC+TGG | 0.361243 | 2_1:-4808450 | None:intergenic |
| GTCCTGGTGGCGAAGAAGTT+TGG | 0.362509 | 2_1:-4807408 | None:intergenic |
| TCTCTCCAGTTCCCACAATC+TGG | 0.362569 | 2_1:-4807095 | None:intergenic |
| CCGTAATTGCTTTCAATGAA+TGG | 0.369771 | 2_1:-4807028 | None:intergenic |
| TAAATGATACTTTGTCCTTT+CGG | 0.372149 | 2_1:-4806348 | None:intergenic |
| ACTTACAGAAGAATGAGATT+TGG | 0.373288 | 2_1:-4805649 | None:intergenic |
| GGTTGGAAGTGCTGATGTTT+TGG | 0.376129 | 2_1:+4806046 | Msa0189390:CDS |
| CCATTCATTGAAAGCAATTA+CGG | 0.379808 | 2_1:+4807028 | Msa0189390:CDS |
| CACCAATCCCAGCCTCAATA+AGG | 0.379909 | 2_1:-4808613 | None:intergenic |
| AGCTTCTCAATAGTGACATT+TGG | 0.398828 | 2_1:-4808749 | None:intergenic |
| TCTGTATCCTTTCCGGTTCA+AGG | 0.400166 | 2_1:-4808534 | None:intergenic |
| ATCTCCACGGCATCTTAGTT+GGG | 0.400781 | 2_1:+4807161 | Msa0189390:CDS |
| AATCTCCACGGCATCTTAGT+TGG | 0.400971 | 2_1:+4807160 | Msa0189390:CDS |
| TACAACGGTAGTTGTTTGTT+TGG | 0.402412 | 2_1:+4808923 | Msa0189390:three_prime_UTR |
| GTACTTACTCGGCCTGCTAT+TGG | 0.402769 | 2_1:+4809032 | Msa0189390:three_prime_UTR |
| CGGCGATCGTGATGCTCATA+TGG | 0.404054 | 2_1:+4806292 | Msa0189390:CDS |
| GATTGATTGTGACGATTTCA+AGG | 0.407598 | 2_1:+4807385 | Msa0189390:CDS |
| TAATCGAAATCCAAATTGTA+GGG | 0.409133 | 2_1:-4806956 | None:intergenic |
| TCCTTTGGTATACCTTGAAC+CGG | 0.409987 | 2_1:+4808522 | Msa0189390:CDS |
| CGCCTTATTGAGGCTGGGAT+TGG | 0.413634 | 2_1:+4808611 | Msa0189390:CDS |
| GAGAAAAGAGAAATAGTTCT+GGG | 0.419070 | 2_1:+4806209 | Msa0189390:CDS |
| GCAGTTTGAAGTTGGTGTTT+TGG | 0.421806 | 2_1:+4807063 | Msa0189390:CDS |
| ATAATCGAAATCCAAATTGT+AGG | 0.431275 | 2_1:-4806957 | None:intergenic |
| GAAGCAGATGATGAAATTAC+CGG | 0.436026 | 2_1:+4806272 | Msa0189390:CDS |
| CACATTCCATTCTGTACATA+CGG | 0.437616 | 2_1:-4807334 | None:intergenic |
| GTTTGCCAGATTGTGGGAAC+TGG | 0.438579 | 2_1:+4807090 | Msa0189390:CDS |
| TGGATTGGTTTGCCAGATTG+TGG | 0.440343 | 2_1:+4807083 | Msa0189390:CDS |
| AAAGATCGCCTTATTGAGGC+TGG | 0.444472 | 2_1:+4808605 | Msa0189390:CDS |
| GGTTCTACATCCACGTTGAT+GGG | 0.451639 | 2_1:+4807628 | Msa0189390:CDS |
| AAGGTATACCAAAGGAAAAT+GGG | 0.454267 | 2_1:-4808515 | None:intergenic |
| AACTGGAGAGAAATGAGTAC+TGG | 0.457961 | 2_1:+4807107 | Msa0189390:CDS |
| GCACTTACTCGTTTCACAAA+CGG | 0.462074 | 2_1:-4807672 | None:intergenic |
| TGTTTCTGGCCACAAATTTG+TGG | 0.463956 | 2_1:+4808370 | Msa0189390:CDS |
| AGGTTCTACATCCACGTTGA+TGG | 0.464905 | 2_1:+4807627 | Msa0189390:CDS |
| TGTGGAATACCTTGCGTCTA+GGG | 0.469635 | 2_1:+4808457 | Msa0189390:CDS |
| TTGTGCAGAAGCGTGCTGCC+TGG | 0.472473 | 2_1:+4808792 | Msa0189390:CDS |
| GTCTAGGGATGCTACAATCA+TGG | 0.475937 | 2_1:+4808472 | Msa0189390:CDS |
| TTATAATTGCCGGTTTGTCC+TGG | 0.477482 | 2_1:-4807424 | None:intergenic |
| GGATTGGTTTGCCAGATTGT+GGG | 0.481071 | 2_1:+4807084 | Msa0189390:CDS |
| AGCTGTGGATGATCTTGATC+TGG | 0.487663 | 2_1:+4807566 | Msa0189390:CDS |
| GAGATTTGGAATCGAACAAA+GGG | 0.490635 | 2_1:-4805635 | None:intergenic |
| GAAACACTTACACTGCCAAT+AGG | 0.491831 | 2_1:-4808353 | None:intergenic |
| TGTCAGCTGTTCCTCTGTTG+TGG | 0.493820 | 2_1:+4806013 | Msa0189390:intron |
| CACTCCCGGCAGTTTGAAGT+TGG | 0.494148 | 2_1:+4807055 | Msa0189390:CDS |
| CAAGTGGCAGCTAGCATGCA+AGG | 0.495774 | 2_1:+4808700 | Msa0189390:CDS |
| ATGTGGAATACCTTGCGTCT+AGG | 0.497620 | 2_1:+4808456 | Msa0189390:CDS |
| CTTCAAAGATCGCCTTATTG+AGG | 0.502325 | 2_1:+4808601 | Msa0189390:CDS |
| ATGCCATTGTCTGCAACTAC+AGG | 0.502844 | 2_1:-4806152 | None:intergenic |
| TCTTCGCCACCAGGACAAAC+CGG | 0.503457 | 2_1:+4807415 | Msa0189390:CDS |
| GAAGCATACAAAATCCCATC+TGG | 0.503780 | 2_1:-4807278 | None:intergenic |
| GCTGACACATCAAAATCATC+AGG | 0.505859 | 2_1:-4806107 | None:intergenic |
| CAACTTCAAACTGCCGGGAG+TGG | 0.511064 | 2_1:-4807054 | None:intergenic |
| AAACACCAACTTCAAACTGC+CGG | 0.513920 | 2_1:-4807060 | None:intergenic |
| TGCTCATATGGCAAGTGTGC+TGG | 0.514546 | 2_1:+4806304 | Msa0189390:CDS |
| GCAATTACGGTGTCCACTCC+CGG | 0.517071 | 2_1:+4807041 | Msa0189390:CDS |
| ACATCTGATGCTATGCAATA+CGG | 0.519849 | 2_1:-4808836 | None:intergenic |
| AGCTGCCCGTATGTACAGAA+TGG | 0.519902 | 2_1:+4807328 | Msa0189390:CDS |
| GTTTCTGGCCACAAATTTGT+GGG | 0.520034 | 2_1:+4808371 | Msa0189390:CDS |
| TAGGGCACCCCACAAATTTG+TGG | 0.531810 | 2_1:-4808379 | None:intergenic |
| AACACCAACTTCAAACTGCC+GGG | 0.540408 | 2_1:-4807059 | None:intergenic |
| GGCCAAACTTCTTCGCCACC+AGG | 0.541501 | 2_1:+4807406 | Msa0189390:CDS |
| ATACAGAGGCTTTCAGAAAG+AGG | 0.543655 | 2_1:+4808550 | Msa0189390:CDS |
| CGTGCTGCCTGGTTTGAAGA+TGG | 0.544092 | 2_1:+4808803 | Msa0189390:CDS |
| TAATGCTCTTTCCAGGAATG+TGG | 0.546453 | 2_1:+4808439 | Msa0189390:CDS |
| ATAACAAACTGCGGCACAGA+AGG | 0.546572 | 2_1:+4807136 | Msa0189390:CDS |
| AAGTGGCAGCTAGCATGCAA+GGG | 0.555226 | 2_1:+4808701 | Msa0189390:CDS |
| AACAATATATGACCAATAGC+AGG | 0.555266 | 2_1:-4809044 | None:intergenic |
| AGGAGAGAGGTGTTACCAGA+TGG | 0.556029 | 2_1:+4807263 | Msa0189390:intron |
| TTTGCAGGTACAACTGTGAA+AGG | 0.557302 | 2_1:+4807543 | Msa0189390:intron |
| CAACTACCGTTGTAAACTCT+AGG | 0.557829 | 2_1:-4808914 | None:intergenic |
| TGGTGTGCAGATAACAAGAT+TGG | 0.558215 | 2_1:+4808409 | Msa0189390:CDS |
| ACTGGAGAGAAATGAGTACT+GGG | 0.560922 | 2_1:+4807108 | Msa0189390:CDS |
| TAATTGCCGGTTTGTCCTGG+TGG | 0.564263 | 2_1:-4807421 | None:intergenic |
| AGGCACTGGATCTTTGATGA+TGG | 0.564483 | 2_1:-4806129 | None:intergenic |
| TCTGCAACTACAGGAGGCAC+TGG | 0.566407 | 2_1:-4806143 | None:intergenic |
| CATATGAGCATCACGATCGC+CGG | 0.568671 | 2_1:-4806291 | None:intergenic |
| TGGTATACCTTGAACCGGAA+AGG | 0.568933 | 2_1:+4808527 | Msa0189390:CDS |
| GCAATTATAAATGTGAACAT+AGG | 0.571006 | 2_1:+4807437 | Msa0189390:CDS |
| GTTGTGGATAACAAAATGGT+TGG | 0.572307 | 2_1:+4806029 | Msa0189390:exon |
| CGTATAAATTCTTCATCATG+TGG | 0.574666 | 2_1:-4808677 | None:intergenic |
| ATGAAGAATTTATACGCAAG+TGG | 0.575001 | 2_1:+4808684 | Msa0189390:CDS |
| ACCAAAGGAAAATGGGAGCA+TGG | 0.576829 | 2_1:-4808508 | None:intergenic |
| AAGGAGGAGGCAAAGACCAA+TGG | 0.579696 | 2_1:+4806179 | Msa0189390:CDS |
| TCTAGGGATGCTACAATCAT+GGG | 0.583702 | 2_1:+4808473 | Msa0189390:CDS |
| GGAGAGAGGTGTTACCAGAT+GGG | 0.584932 | 2_1:+4807264 | Msa0189390:intron |
| ATCTGCACACCACAAGGCAT+AGG | 0.585285 | 2_1:-4808398 | None:intergenic |
| TCTGCACACCACAAGGCATA+GGG | 0.585390 | 2_1:-4808397 | None:intergenic |
| ATTACTTATGCAAAGCACAT+AGG | 0.585834 | 2_1:-4808874 | None:intergenic |
| TGAGATTTGGAATCGAACAA+AGG | 0.586672 | 2_1:-4805636 | None:intergenic |
| CTTGTTATCTGCACACCACA+AGG | 0.586677 | 2_1:-4808404 | None:intergenic |
| AAGATCGCCTTATTGAGGCT+GGG | 0.598414 | 2_1:+4808606 | Msa0189390:CDS |
| CAAGGGGAACATCGCTCATG+TGG | 0.599449 | 2_1:+4808718 | Msa0189390:CDS |
| CTCCGTGACTTCTAGACACG+TGG | 0.600111 | 2_1:-4806246 | None:intergenic |
| GGCACAGAAGGCAATCTCCA+CGG | 0.601970 | 2_1:+4807148 | Msa0189390:CDS |
| TTTCAATGAATGGATCTCCA+AGG | 0.602183 | 2_1:-4807018 | None:intergenic |
| TATTGCATAGCATCAGATGT+AGG | 0.606217 | 2_1:+4808839 | Msa0189390:CDS |
| CACCACGTGTCTAGAAGTCA+CGG | 0.612407 | 2_1:+4806244 | Msa0189390:CDS |
| TCCGGTTCAAGGTATACCAA+AGG | 0.613210 | 2_1:-4808523 | None:intergenic |
| TCTTTGCTATCGTACTTACT+CGG | 0.615895 | 2_1:+4809021 | Msa0189390:three_prime_UTR |
| AAATGTGCCATCTTCAAACC+AGG | 0.619279 | 2_1:-4808810 | None:intergenic |
| ACATTCCATTCTGTACATAC+GGG | 0.622283 | 2_1:-4807333 | None:intergenic |
| CAATGGCATTGACAAGGAGG+AGG | 0.624325 | 2_1:+4806166 | Msa0189390:CDS |
| GAGGAGGCAAAGACCAATGG+AGG | 0.626032 | 2_1:+4806182 | Msa0189390:CDS |
| ACAGAAAATCCTTAACCGAA+AGG | 0.628041 | 2_1:+4806333 | Msa0189390:CDS |
| GTTCTACATCCACGTTGATG+GGG | 0.628041 | 2_1:+4807629 | Msa0189390:CDS |
| GTGGGGTGCCCTATGCCTTG+TGG | 0.629093 | 2_1:+4808389 | Msa0189390:CDS |
| TGCAGACAATGGCATTGACA+AGG | 0.630101 | 2_1:+4806160 | Msa0189390:CDS |
| GGGGAACATCGCTCATGTGG+TGG | 0.630496 | 2_1:+4808721 | Msa0189390:CDS |
| CCTCCTGTAGTTGCAGACAA+TGG | 0.632901 | 2_1:+4806149 | Msa0189390:CDS |
| AGTGGCAGCTAGCATGCAAG+GGG | 0.633178 | 2_1:+4808702 | Msa0189390:CDS |
| CTAACCCAACTAAGATGCCG+TGG | 0.634841 | 2_1:-4807165 | None:intergenic |
| GCAGCACGGTTGTATTTGAG+CGG | 0.636417 | 2_1:+4808654 | Msa0189390:CDS |
| TTTCTGGCCACAAATTTGTG+GGG | 0.645464 | 2_1:+4808372 | Msa0189390:CDS |
| CCATTGTCTGCAACTACAGG+AGG | 0.649629 | 2_1:-4806149 | None:intergenic |
| TACAACTGTGAAAGGAGCTG+TGG | 0.649687 | 2_1:+4807551 | Msa0189390:CDS |
| TTGTAGCATCCCTAGACGCA+AGG | 0.653494 | 2_1:-4808466 | None:intergenic |
| GCTTAATGAGCTCAGCAGCA+CGG | 0.655655 | 2_1:+4808640 | Msa0189390:CDS |
| AATCGAAATCCAAATTGTAG+GGG | 0.668248 | 2_1:-4806955 | None:intergenic |
| AGACAATGGCATTGACAAGG+AGG | 0.668839 | 2_1:+4806163 | Msa0189390:CDS |
| AAGAGGTACAGAAATGCTTG+CGG | 0.690246 | 2_1:+4808567 | Msa0189390:CDS |
| TGGGGCTATATAACAAACTG+CGG | 0.697601 | 2_1:+4807127 | Msa0189390:CDS |
| CAAACAAAGCCCCATCAACG+TGG | 0.706029 | 2_1:-4807638 | None:intergenic |
| TTGAACCGGAAAGGATACAG+AGG | 0.728176 | 2_1:+4808536 | Msa0189390:CDS |
| ACAAAGGGAGAAGAAAACAG+TGG | 0.734404 | 2_1:-4805620 | None:intergenic |
| CTGGAGAGAAATGAGTACTG+GGG | 0.739944 | 2_1:+4807109 | Msa0189390:CDS |
| ATAGAACCTAGAGTTTACAA+CGG | 0.759152 | 2_1:+4808908 | Msa0189390:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATAATCAATTGATAA+TGG | - | chr2_1:4805716-4805735 | None:intergenic | 15.0% |
| !! | TTTAATTCATTATGTAAATC+AGG | + | chr2_1:4805754-4805773 | Msa0189390:intron | 15.0% |
| !! | AAGAGTAAATCATAAAAAAT+GGG | - | chr2_1:4805974-4805993 | None:intergenic | 15.0% |
| !! | TAAGAGTAAATCATAAAAAA+TGG | - | chr2_1:4805975-4805994 | None:intergenic | 15.0% |
| !!! | TTATGATTTACTCTTAATTT+TGG | + | chr2_1:4805979-4805998 | Msa0189390:intron | 15.0% |
| !! | ATCATATAATAATTGGAATA+AGG | - | chr2_1:4807928-4807947 | None:intergenic | 15.0% |
| !! | AAGTTTGATCATATAATAAT+TGG | - | chr2_1:4807935-4807954 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTAAATATAACC+AGG | - | chr2_1:4808105-4808124 | None:intergenic | 15.0% |
| !! | TTGAAAATGTTGTAATAAAC+AGG | + | chr2_1:4805858-4805877 | Msa0189390:intron | 20.0% |
| !!! | TGTAATCTTGCATATATTTT+TGG | + | chr2_1:4806634-4806653 | Msa0189390:intron | 20.0% |
| !!! | TGAAGTTACTTTATTTTACT+TGG | + | chr2_1:4806722-4806741 | Msa0189390:intron | 20.0% |
| !! | CATAAATTAAATGAGATGAT+AGG | - | chr2_1:4806916-4806935 | None:intergenic | 20.0% |
| !! | TTTGTAAAGAACCTAAAATA+TGG | + | chr2_1:4807224-4807243 | Msa0189390:intron | 20.0% |
| !!! | AGACTTAAATTTGAAATAAG+GGG | - | chr2_1:4808060-4808079 | None:intergenic | 20.0% |
| !!! | CAGACTTAAATTTGAAATAA+GGG | - | chr2_1:4808061-4808080 | None:intergenic | 20.0% |
| !!! | TCAGACTTAAATTTGAAATA+AGG | - | chr2_1:4808062-4808081 | None:intergenic | 20.0% |
| !!! | TTTTTTTGGAGTTTTTTATG+TGG | + | chr2_1:4808952-4808971 | Msa0189390:three_prime_UTR | 20.0% |
| ! | GCAAAATCAATTATAATCTC+TGG | - | chr2_1:4805819-4805838 | None:intergenic | 25.0% |
| ! | TAAATGATACTTTGTCCTTT+CGG | - | chr2_1:4806351-4806370 | None:intergenic | 25.0% |
| !!! | TTGCATATATTTTTGGAAGT+TGG | + | chr2_1:4806641-4806660 | Msa0189390:intron | 25.0% |
| ! | CTAGAGATTAATTAATGAGT+TGG | + | chr2_1:4806770-4806789 | Msa0189390:intron | 25.0% |
| !! | AGATTAATTAATGAGTTGGA+TGG | + | chr2_1:4806774-4806793 | Msa0189390:intron | 25.0% |
| !! | GATTAATTAATGAGTTGGAT+GGG | + | chr2_1:4806775-4806794 | Msa0189390:intron | 25.0% |
| !! | ATTAATTAATGAGTTGGATG+GGG | + | chr2_1:4806776-4806795 | Msa0189390:intron | 25.0% |
| ! | TGCTATATGATAGAACATTA+TGG | + | chr2_1:4806802-4806821 | Msa0189390:intron | 25.0% |
| ! | TATATGATAGAACATTATGG+TGG | + | chr2_1:4806805-4806824 | Msa0189390:intron | 25.0% |
| ! | ATTTATGAAAAATCTATCGC+AGG | + | chr2_1:4806929-4806948 | Msa0189390:intron | 25.0% |
| ! | TAATCGAAATCCAAATTGTA+GGG | - | chr2_1:4806959-4806978 | None:intergenic | 25.0% |
| ! | ATAATCGAAATCCAAATTGT+AGG | - | chr2_1:4806960-4806979 | None:intergenic | 25.0% |
| ! | TACAATTTGGATTTCGATTA+TGG | + | chr2_1:4806959-4806978 | Msa0189390:CDS | 25.0% |
| !! | AGTCACTTAAACCATATTTT+AGG | - | chr2_1:4807238-4807257 | None:intergenic | 25.0% |
| ! | ATGTTCACATTTATAATTGC+CGG | - | chr2_1:4807437-4807456 | None:intergenic | 25.0% |
| ! | GCAATTATAAATGTGAACAT+AGG | + | chr2_1:4807437-4807456 | Msa0189390:CDS | 25.0% |
| ! | TGCTCACATTTGTATAAATT+AGG | - | chr2_1:4808005-4808024 | None:intergenic | 25.0% |
| ! | TTGGACAATATGTTATTGTT+TGG | + | chr2_1:4808164-4808183 | Msa0189390:intron | 25.0% |
| ! | GGATACAAAATAACAGAATA+CGG | - | chr2_1:4808238-4808257 | None:intergenic | 25.0% |
| ! | AAAATAAATTGTGCTTTGTC+AGG | + | chr2_1:4808307-4808326 | Msa0189390:intron | 25.0% |
| !!! | TTGTTTGGAGTTTGTTTTTT+TGG | + | chr2_1:4808938-4808957 | Msa0189390:three_prime_UTR | 25.0% |
| ACTTACAGAAGAATGAGATT+TGG | - | chr2_1:4805652-4805671 | None:intergenic | 30.0% | |
| AAACAGGCTCTATATATTTG+TGG | + | chr2_1:4805874-4805893 | Msa0189390:intron | 30.0% | |
| ! | GTGAAACATTTTCTTTTTGC+AGG | + | chr2_1:4805899-4805918 | Msa0189390:intron | 30.0% |
| ! | TTTTCTTTTTGCAGGCATTT+TGG | + | chr2_1:4805907-4805926 | Msa0189390:intron | 30.0% |
| ! | TTTCTTTTTGCAGGCATTTT+GGG | + | chr2_1:4805908-4805927 | Msa0189390:intron | 30.0% |
| AGAGAAAAGAGAAATAGTTC+TGG | + | chr2_1:4806208-4806227 | Msa0189390:CDS | 30.0% | |
| GAGAAAAGAGAAATAGTTCT+GGG | + | chr2_1:4806209-4806228 | Msa0189390:CDS | 30.0% | |
| ! | GAAAGGACAAAGTATCATTT+AGG | + | chr2_1:4806350-4806369 | Msa0189390:CDS | 30.0% |
| AATGCAATCAGCAAAGTAAA+AGG | - | chr2_1:4806400-4806419 | None:intergenic | 30.0% | |
| AAGATCATTCTATAGACTAG+AGG | + | chr2_1:4806593-4806612 | Msa0189390:intron | 30.0% | |
| AGATCATTCTATAGACTAGA+GGG | + | chr2_1:4806594-4806613 | Msa0189390:intron | 30.0% | |
| AATCTCTAGATCTTTCTCAA+TGG | - | chr2_1:4806759-4806778 | None:intergenic | 30.0% | |
| ACTAATCTGTGTAGTTCATT+AGG | + | chr2_1:4806890-4806909 | Msa0189390:intron | 30.0% | |
| AATCGAAATCCAAATTGTAG+GGG | - | chr2_1:4806958-4806977 | None:intergenic | 30.0% | |
| CCATTCATTGAAAGCAATTA+CGG | + | chr2_1:4807028-4807047 | Msa0189390:CDS | 30.0% | |
| AAGATTGAGACTCTTAATTC+TGG | + | chr2_1:4807359-4807378 | Msa0189390:CDS | 30.0% | |
| ACCAAAAGAATGAAGATGAT+GGG | - | chr2_1:4807502-4807521 | None:intergenic | 30.0% | |
| AACCAAAAGAATGAAGATGA+TGG | - | chr2_1:4807503-4807522 | None:intergenic | 30.0% | |
| ! | TCATAGAACTGAAATTTTGC+AGG | + | chr2_1:4807528-4807547 | Msa0189390:intron | 30.0% |
| TTACAAAAACTTGAAGAAGC+TGG | + | chr2_1:4807591-4807610 | Msa0189390:CDS | 30.0% | |
| AATGTTACACGATTTACTCA+TGG | - | chr2_1:4807706-4807725 | None:intergenic | 30.0% | |
| ATGCAAACAACCAAAACAAA+TGG | - | chr2_1:4807799-4807818 | None:intergenic | 30.0% | |
| TGGTGACTATTAGTAAGAAA+CGG | + | chr2_1:4808032-4808051 | Msa0189390:intron | 30.0% | |
| ! | ATTTTGTCTTTATTCTGACC+TGG | + | chr2_1:4808084-4808103 | Msa0189390:intron | 30.0% |
| CTTTGTCAATACATCTATGT+TGG | + | chr2_1:4808145-4808164 | Msa0189390:intron | 30.0% | |
| ! | GGCTTCTTAAAAGTAACTTT+TGG | - | chr2_1:4808335-4808354 | None:intergenic | 30.0% |
| !!! | GTTACTTTTAAGAAGCCTAT+TGG | + | chr2_1:4808338-4808357 | Msa0189390:CDS | 30.0% |
| AAGGTATACCAAAGGAAAAT+GGG | - | chr2_1:4808518-4808537 | None:intergenic | 30.0% | |
| CGTATAAATTCTTCATCATG+TGG | - | chr2_1:4808680-4808699 | None:intergenic | 30.0% | |
| ATGAAGAATTTATACGCAAG+TGG | + | chr2_1:4808684-4808703 | Msa0189390:CDS | 30.0% | |
| ATTACTTATGCAAAGCACAT+AGG | - | chr2_1:4808877-4808896 | None:intergenic | 30.0% | |
| ATAGAACCTAGAGTTTACAA+CGG | + | chr2_1:4808908-4808927 | Msa0189390:three_prime_UTR | 30.0% | |
| ! | GAGATTTGGAATCGAACAAA+GGG | - | chr2_1:4805638-4805657 | None:intergenic | 35.0% |
| ! | TGAGATTTGGAATCGAACAA+AGG | - | chr2_1:4805639-4805658 | None:intergenic | 35.0% |
| !! | CATTTTGTTATCCACAACAG+AGG | - | chr2_1:4806027-4806046 | None:intergenic | 35.0% |
| CTCTGTTGTGGATAACAAAA+TGG | + | chr2_1:4806025-4806044 | Msa0189390:exon | 35.0% | |
| GTTGTGGATAACAAAATGGT+TGG | + | chr2_1:4806029-4806048 | Msa0189390:exon | 35.0% | |
| ! | TCTTTTCTCTTTTCCTCCAT+TGG | - | chr2_1:4806198-4806217 | None:intergenic | 35.0% |
| GTAATTTCATCATCTGCTTC+AGG | - | chr2_1:4806272-4806291 | None:intergenic | 35.0% | |
| GAAGCAGATGATGAAATTAC+CGG | + | chr2_1:4806272-4806291 | Msa0189390:CDS | 35.0% | |
| ! | GGTTAAGGATTTTCTGTATC+TGG | - | chr2_1:4806330-4806349 | None:intergenic | 35.0% |
| ACAGAAAATCCTTAACCGAA+AGG | + | chr2_1:4806333-4806352 | Msa0189390:CDS | 35.0% | |
| ATACTTTGTCCTTTCGGTTA+AGG | - | chr2_1:4806345-4806364 | None:intergenic | 35.0% | |
| GCAAAGTAAAAGGATCAAGA+GGG | - | chr2_1:4806390-4806409 | None:intergenic | 35.0% | |
| AGCAAAGTAAAAGGATCAAG+AGG | - | chr2_1:4806391-4806410 | None:intergenic | 35.0% | |
| ! | CGGCGCTATTATAATTTTAC+TGG | + | chr2_1:4806479-4806498 | Msa0189390:intron | 35.0% |
| AACAACAACAACCAAGTACA+TGG | - | chr2_1:4806839-4806858 | None:intergenic | 35.0% | |
| ! | CACTTTTCCATAAACAACCT+TGG | + | chr2_1:4807001-4807020 | Msa0189390:CDS | 35.0% |
| TTTCAATGAATGGATCTCCA+AGG | - | chr2_1:4807021-4807040 | None:intergenic | 35.0% | |
| CCGTAATTGCTTTCAATGAA+TGG | - | chr2_1:4807031-4807050 | None:intergenic | 35.0% | |
| !!! | TTGAAGTTGGTGTTTTGGAT+TGG | + | chr2_1:4807068-4807087 | Msa0189390:CDS | 35.0% |
| ! | ATGGTTTAAGTGACTTTTGC+AGG | + | chr2_1:4807243-4807262 | Msa0189390:intron | 35.0% |
| ACATTCCATTCTGTACATAC+GGG | - | chr2_1:4807336-4807355 | None:intergenic | 35.0% | |
| CACATTCCATTCTGTACATA+CGG | - | chr2_1:4807337-4807356 | None:intergenic | 35.0% | |
| GATTGATTGTGACGATTTCA+AGG | + | chr2_1:4807385-4807404 | Msa0189390:CDS | 35.0% | |
| !! | AAAAGAATGAAGATGATGGG+AGG | - | chr2_1:4807499-4807518 | None:intergenic | 35.0% |
| ! | TCCCATCATCTTCATTCTTT+TGG | + | chr2_1:4807498-4807517 | Msa0189390:intron | 35.0% |
| !!! | CATCTTCATTCTTTTGGTTC+TGG | + | chr2_1:4807504-4807523 | Msa0189390:intron | 35.0% |
| ! | TGAAGAAGCTGGATTTTCAA+AGG | + | chr2_1:4807602-4807621 | Msa0189390:CDS | 35.0% |
| GCATTCTCTATCAGAACATA+TGG | - | chr2_1:4807763-4807782 | None:intergenic | 35.0% | |
| !! | TGTGTCATTGCCATTTGTTT+TGG | + | chr2_1:4807786-4807805 | Msa0189390:intron | 35.0% |
| ATACCCTTTCTATCTTACAG+TGG | + | chr2_1:4807857-4807876 | Msa0189390:intron | 35.0% | |
| AAGCCACTGTAAGATAGAAA+GGG | - | chr2_1:4807863-4807882 | None:intergenic | 35.0% | |
| ! | GCATTTTCACTTCAGCAATA+AGG | + | chr2_1:4807888-4807907 | Msa0189390:intron | 35.0% |
| ACAAATGTGAGCATGACTAT+TGG | + | chr2_1:4808012-4808031 | Msa0189390:intron | 35.0% | |
| GAACTATTCCTGTAGTTTCT+TGG | + | chr2_1:4808206-4808225 | Msa0189390:intron | 35.0% | |
| AGCATATTAATGCTCTTTCC+AGG | + | chr2_1:4808432-4808451 | Msa0189390:CDS | 35.0% | |
| CAAGGTATACCAAAGGAAAA+TGG | - | chr2_1:4808519-4808538 | None:intergenic | 35.0% | |
| AGCTTCTCAATAGTGACATT+TGG | - | chr2_1:4808752-4808771 | None:intergenic | 35.0% | |
| ACATCTGATGCTATGCAATA+CGG | - | chr2_1:4808839-4808858 | None:intergenic | 35.0% | |
| TATTGCATAGCATCAGATGT+AGG | + | chr2_1:4808839-4808858 | Msa0189390:CDS | 35.0% | |
| TACAACGGTAGTTGTTTGTT+TGG | + | chr2_1:4808923-4808942 | Msa0189390:three_prime_UTR | 35.0% | |
| ! | TCTTTGCTATCGTACTTACT+CGG | + | chr2_1:4809021-4809040 | Msa0189390:three_prime_UTR | 35.0% |
| CTCTATCATCTTCCACTTAG+TGG | + | chr2_1:4805683-4805702 | Msa0189390:intron | 40.0% | |
| AATGGAAATGCACCACTAAG+TGG | - | chr2_1:4805698-4805717 | None:intergenic | 40.0% | |
| GAGGAACAGCTGACAAAAAT+TGG | - | chr2_1:4806008-4806027 | None:intergenic | 40.0% | |
| !!! | AGTGCTGATGTTTTGGTCAA+TGG | + | chr2_1:4806053-4806072 | Msa0189390:CDS | 40.0% |
| GTCAATGGTTTGAGCACTAA+TGG | + | chr2_1:4806068-4806087 | Msa0189390:CDS | 40.0% | |
| GCTGACACATCAAAATCATC+AGG | - | chr2_1:4806110-4806129 | None:intergenic | 40.0% | |
| GAATGAATTTGCAACTGCGT+CGG | + | chr2_1:4806459-4806478 | Msa0189390:intron | 40.0% | |
| ! | ACCTTCAAAGGGGTCTTTTT+GGG | - | chr2_1:4806519-4806538 | None:intergenic | 40.0% |
| ! | AACCTTCAAAGGGGTCTTTT+TGG | - | chr2_1:4806520-4806539 | None:intergenic | 40.0% |
| TCACATGCACAACCTTCAAA+GGG | - | chr2_1:4806530-4806549 | None:intergenic | 40.0% | |
| TGGCATTTGATCCATGTACT+TGG | + | chr2_1:4806825-4806844 | Msa0189390:intron | 40.0% | |
| TGGATCTCCAAGGTTGTTTA+TGG | - | chr2_1:4807011-4807030 | None:intergenic | 40.0% | |
| AAACACCAACTTCAAACTGC+CGG | - | chr2_1:4807063-4807082 | None:intergenic | 40.0% | |
| !!! | GCAGTTTGAAGTTGGTGTTT+TGG | + | chr2_1:4807063-4807082 | Msa0189390:CDS | 40.0% |
| AACTGGAGAGAAATGAGTAC+TGG | + | chr2_1:4807107-4807126 | Msa0189390:CDS | 40.0% | |
| ACTGGAGAGAAATGAGTACT+GGG | + | chr2_1:4807108-4807127 | Msa0189390:CDS | 40.0% | |
| TGGGGCTATATAACAAACTG+CGG | + | chr2_1:4807127-4807146 | Msa0189390:CDS | 40.0% | |
| GAAGCATACAAAATCCCATC+TGG | - | chr2_1:4807281-4807300 | None:intergenic | 40.0% | |
| !! | TTATAATTGCCGGTTTGTCC+TGG | - | chr2_1:4807427-4807446 | None:intergenic | 40.0% |
| TTTGCAGGTACAACTGTGAA+AGG | + | chr2_1:4807543-4807562 | Msa0189390:intron | 40.0% | |
| ! | AAGCTGGATTTTCAAAGGAC+AGG | + | chr2_1:4807607-4807626 | Msa0189390:CDS | 40.0% |
| GCACTTACTCGTTTCACAAA+CGG | - | chr2_1:4807675-4807694 | None:intergenic | 40.0% | |
| TCAGAACATATGGAGATAGC+AGG | - | chr2_1:4807753-4807772 | None:intergenic | 40.0% | |
| ! | GATATTTGCGCACTGCATTT+TGG | + | chr2_1:4807823-4807842 | Msa0189390:intron | 40.0% |
| ! | TAAGATAGAAAGGGTATGCG+TGG | - | chr2_1:4807854-4807873 | None:intergenic | 40.0% |
| CAAGCCACTGTAAGATAGAA+AGG | - | chr2_1:4807864-4807883 | None:intergenic | 40.0% | |
| CTCTGTCGATGCATATGAAA+TGG | - | chr2_1:4808259-4808278 | None:intergenic | 40.0% | |
| GAAACACTTACACTGCCAAT+AGG | - | chr2_1:4808356-4808375 | None:intergenic | 40.0% | |
| ATTGGCAGTGTAAGTGTTTC+TGG | + | chr2_1:4808356-4808375 | Msa0189390:CDS | 40.0% | |
| !! | TGTTTCTGGCCACAAATTTG+TGG | + | chr2_1:4808370-4808389 | Msa0189390:CDS | 40.0% |
| !! | GTTTCTGGCCACAAATTTGT+GGG | + | chr2_1:4808371-4808390 | Msa0189390:CDS | 40.0% |
| ! | TTTCTGGCCACAAATTTGTG+GGG | + | chr2_1:4808372-4808391 | Msa0189390:CDS | 40.0% |
| TGGTGTGCAGATAACAAGAT+TGG | + | chr2_1:4808409-4808428 | Msa0189390:CDS | 40.0% | |
| TAATGCTCTTTCCAGGAATG+TGG | + | chr2_1:4808439-4808458 | Msa0189390:CDS | 40.0% | |
| TCTAGGGATGCTACAATCAT+GGG | + | chr2_1:4808473-4808492 | Msa0189390:CDS | 40.0% | |
| ACAATCATGGGCAGTCTAAA+TGG | + | chr2_1:4808485-4808504 | Msa0189390:CDS | 40.0% | |
| TCCTTTGGTATACCTTGAAC+CGG | + | chr2_1:4808522-4808541 | Msa0189390:CDS | 40.0% | |
| ATACAGAGGCTTTCAGAAAG+AGG | + | chr2_1:4808550-4808569 | Msa0189390:CDS | 40.0% | |
| ! | AAGAGGTACAGAAATGCTTG+CGG | + | chr2_1:4808567-4808586 | Msa0189390:CDS | 40.0% |
| ! | CTTCAAAGATCGCCTTATTG+AGG | + | chr2_1:4808601-4808620 | Msa0189390:CDS | 40.0% |
| AAATGTGCCATCTTCAAACC+AGG | - | chr2_1:4808813-4808832 | None:intergenic | 40.0% | |
| CAACTACCGTTGTAAACTCT+AGG | - | chr2_1:4808917-4808936 | None:intergenic | 40.0% | |
| !!! | GGTTGGAAGTGCTGATGTTT+TGG | + | chr2_1:4806046-4806065 | Msa0189390:CDS | 45.0% |
| !! | AGGCACTGGATCTTTGATGA+TGG | - | chr2_1:4806132-4806151 | None:intergenic | 45.0% |
| ATGCCATTGTCTGCAACTAC+AGG | - | chr2_1:4806155-4806174 | None:intergenic | 45.0% | |
| !! | TGCAGACAATGGCATTGACA+AGG | + | chr2_1:4806160-4806179 | Msa0189390:CDS | 45.0% |
| !! | AGACAATGGCATTGACAAGG+AGG | + | chr2_1:4806163-4806182 | Msa0189390:CDS | 45.0% |
| !! | AGGGGTCTTTTTGGGAATCA+AGG | - | chr2_1:4806511-4806530 | None:intergenic | 45.0% |
| TCCCAAAAAGACCCCTTTGA+AGG | + | chr2_1:4806515-4806534 | Msa0189390:intron | 45.0% | |
| CACATGCACAACCTTCAAAG+GGG | - | chr2_1:4806529-4806548 | None:intergenic | 45.0% | |
| CTCACATGCACAACCTTCAA+AGG | - | chr2_1:4806531-4806550 | None:intergenic | 45.0% | |
| AACACCAACTTCAAACTGCC+GGG | - | chr2_1:4807062-4807081 | None:intergenic | 45.0% | |
| !! | TGGATTGGTTTGCCAGATTG+TGG | + | chr2_1:4807083-4807102 | Msa0189390:CDS | 45.0% |
| !! | GGATTGGTTTGCCAGATTGT+GGG | + | chr2_1:4807084-4807103 | Msa0189390:CDS | 45.0% |
| ! | CTGGAGAGAAATGAGTACTG+GGG | + | chr2_1:4807109-4807128 | Msa0189390:CDS | 45.0% |
| ATAACAAACTGCGGCACAGA+AGG | + | chr2_1:4807136-4807155 | Msa0189390:CDS | 45.0% | |
| AATCTCCACGGCATCTTAGT+TGG | + | chr2_1:4807160-4807179 | Msa0189390:CDS | 45.0% | |
| ATCTCCACGGCATCTTAGTT+GGG | + | chr2_1:4807161-4807180 | Msa0189390:CDS | 45.0% | |
| ! | AAGTGACTTTTGCAGGAGAG+AGG | + | chr2_1:4807250-4807269 | Msa0189390:intron | 45.0% |
| !! | ATGAAGATGATGGGAGGCAT+GGG | - | chr2_1:4807493-4807512 | None:intergenic | 45.0% |
| !! | AATGAAGATGATGGGAGGCA+TGG | - | chr2_1:4807494-4807513 | None:intergenic | 45.0% |
| TACAACTGTGAAAGGAGCTG+TGG | + | chr2_1:4807551-4807570 | Msa0189390:CDS | 45.0% | |
| AGCTGTGGATGATCTTGATC+TGG | + | chr2_1:4807566-4807585 | Msa0189390:CDS | 45.0% | |
| AGGTTCTACATCCACGTTGA+TGG | + | chr2_1:4807627-4807646 | Msa0189390:CDS | 45.0% | |
| GGTTCTACATCCACGTTGAT+GGG | + | chr2_1:4807628-4807647 | Msa0189390:CDS | 45.0% | |
| GTTCTACATCCACGTTGATG+GGG | + | chr2_1:4807629-4807648 | Msa0189390:CDS | 45.0% | |
| GAACATATGGAGATAGCAGG+TGG | - | chr2_1:4807750-4807769 | None:intergenic | 45.0% | |
| ! | CTTGTTATCTGCACACCACA+AGG | - | chr2_1:4808407-4808426 | None:intergenic | 45.0% |
| ATGTGGAATACCTTGCGTCT+AGG | + | chr2_1:4808456-4808475 | Msa0189390:CDS | 45.0% | |
| TGTGGAATACCTTGCGTCTA+GGG | + | chr2_1:4808457-4808476 | Msa0189390:CDS | 45.0% | |
| GTCTAGGGATGCTACAATCA+TGG | + | chr2_1:4808472-4808491 | Msa0189390:CDS | 45.0% | |
| ACCAAAGGAAAATGGGAGCA+TGG | - | chr2_1:4808511-4808530 | None:intergenic | 45.0% | |
| TCCGGTTCAAGGTATACCAA+AGG | - | chr2_1:4808526-4808545 | None:intergenic | 45.0% | |
| TGGTATACCTTGAACCGGAA+AGG | + | chr2_1:4808527-4808546 | Msa0189390:CDS | 45.0% | |
| TCTGTATCCTTTCCGGTTCA+AGG | - | chr2_1:4808537-4808556 | None:intergenic | 45.0% | |
| TTGAACCGGAAAGGATACAG+AGG | + | chr2_1:4808536-4808555 | Msa0189390:CDS | 45.0% | |
| GAAAGCCTCTGTATCCTTTC+CGG | - | chr2_1:4808544-4808563 | None:intergenic | 45.0% | |
| ! | AAAGATCGCCTTATTGAGGC+TGG | + | chr2_1:4808605-4808624 | Msa0189390:CDS | 45.0% |
| ! | AAGATCGCCTTATTGAGGCT+GGG | + | chr2_1:4808606-4808625 | Msa0189390:CDS | 45.0% |
| !!! | TTAAAAAAAAAAATTGATTT+TGG | + | chr2_1:4805946-4805965 | Msa0189390:intron | 5.0% |
| TGTCAGCTGTTCCTCTGTTG+TGG | + | chr2_1:4806013-4806032 | Msa0189390:intron | 50.0% | |
| CCATTGTCTGCAACTACAGG+AGG | - | chr2_1:4806152-4806171 | None:intergenic | 50.0% | |
| CCTCCTGTAGTTGCAGACAA+TGG | + | chr2_1:4806149-4806168 | Msa0189390:CDS | 50.0% | |
| !! | CAATGGCATTGACAAGGAGG+AGG | + | chr2_1:4806166-4806185 | Msa0189390:CDS | 50.0% |
| AAGGAGGAGGCAAAGACCAA+TGG | + | chr2_1:4806179-4806198 | Msa0189390:CDS | 50.0% | |
| CACCACGTGTCTAGAAGTCA+CGG | + | chr2_1:4806244-4806263 | Msa0189390:CDS | 50.0% | |
| CATATGAGCATCACGATCGC+CGG | - | chr2_1:4806294-4806313 | None:intergenic | 50.0% | |
| TGCTCATATGGCAAGTGTGC+TGG | + | chr2_1:4806304-4806323 | Msa0189390:CDS | 50.0% | |
| GTTTGCCAGATTGTGGGAAC+TGG | + | chr2_1:4807090-4807109 | Msa0189390:CDS | 50.0% | |
| TCTCTCCAGTTCCCACAATC+TGG | - | chr2_1:4807098-4807117 | None:intergenic | 50.0% | |
| CTAACCCAACTAAGATGCCG+TGG | - | chr2_1:4807168-4807187 | None:intergenic | 50.0% | |
| !! | AGGAGAGAGGTGTTACCAGA+TGG | + | chr2_1:4807263-4807282 | Msa0189390:intron | 50.0% |
| !! | GGAGAGAGGTGTTACCAGAT+GGG | + | chr2_1:4807264-4807283 | Msa0189390:intron | 50.0% |
| AGCTGCCCGTATGTACAGAA+TGG | + | chr2_1:4807328-4807347 | Msa0189390:CDS | 50.0% | |
| !! | TAATTGCCGGTTTGTCCTGG+TGG | - | chr2_1:4807424-4807443 | None:intergenic | 50.0% |
| GCATGGGACTATTGCAGAGA+CGG | - | chr2_1:4807477-4807496 | None:intergenic | 50.0% | |
| CAAACAAAGCCCCATCAACG+TGG | - | chr2_1:4807641-4807660 | None:intergenic | 50.0% | |
| !! | CACGTTGATGGGGCTTTGTT+TGG | + | chr2_1:4807639-4807658 | Msa0189390:CDS | 50.0% |
| CATATGGAGATAGCAGGTGG+AGG | - | chr2_1:4807747-4807766 | None:intergenic | 50.0% | |
| GGCACGATCCAAGAAACTAC+AGG | - | chr2_1:4808217-4808236 | None:intergenic | 50.0% | |
| ! | TAGGGCACCCCACAAATTTG+TGG | - | chr2_1:4808382-4808401 | None:intergenic | 50.0% |
| TCTGCACACCACAAGGCATA+GGG | - | chr2_1:4808400-4808419 | None:intergenic | 50.0% | |
| ATCTGCACACCACAAGGCAT+AGG | - | chr2_1:4808401-4808420 | None:intergenic | 50.0% | |
| ! | CGCAAGGTATTCCACATTCC+TGG | - | chr2_1:4808453-4808472 | None:intergenic | 50.0% |
| TTGTAGCATCCCTAGACGCA+AGG | - | chr2_1:4808469-4808488 | None:intergenic | 50.0% | |
| ! | GCCATGCTCCCATTTTCCTT+TGG | + | chr2_1:4808507-4808526 | Msa0189390:CDS | 50.0% |
| CACCAATCCCAGCCTCAATA+AGG | - | chr2_1:4808616-4808635 | None:intergenic | 50.0% | |
| GCTTAATGAGCTCAGCAGCA+CGG | + | chr2_1:4808640-4808659 | Msa0189390:CDS | 50.0% | |
| GCAGCACGGTTGTATTTGAG+CGG | + | chr2_1:4808654-4808673 | Msa0189390:CDS | 50.0% | |
| AAGTGGCAGCTAGCATGCAA+GGG | + | chr2_1:4808701-4808720 | Msa0189390:CDS | 50.0% | |
| GTACTTACTCGGCCTGCTAT+TGG | + | chr2_1:4809032-4809051 | Msa0189390:three_prime_UTR | 50.0% | |
| ! | TCTGCAACTACAGGAGGCAC+TGG | - | chr2_1:4806146-4806165 | None:intergenic | 55.0% |
| GAGGAGGCAAAGACCAATGG+AGG | + | chr2_1:4806182-4806201 | Msa0189390:CDS | 55.0% | |
| CTCCGTGACTTCTAGACACG+TGG | - | chr2_1:4806249-4806268 | None:intergenic | 55.0% | |
| CGGCGATCGTGATGCTCATA+TGG | + | chr2_1:4806292-4806311 | Msa0189390:CDS | 55.0% | |
| CGCAGGCTACCCCTACAATT+TGG | + | chr2_1:4806946-4806965 | Msa0189390:intron | 55.0% | |
| GCAATTACGGTGTCCACTCC+CGG | + | chr2_1:4807041-4807060 | Msa0189390:CDS | 55.0% | |
| CAACTTCAAACTGCCGGGAG+TGG | - | chr2_1:4807057-4807076 | None:intergenic | 55.0% | |
| ! | CACTCCCGGCAGTTTGAAGT+TGG | + | chr2_1:4807055-4807074 | Msa0189390:CDS | 55.0% |
| GGCACAGAAGGCAATCTCCA+CGG | + | chr2_1:4807148-4807167 | Msa0189390:CDS | 55.0% | |
| ! | GTCCTGGTGGCGAAGAAGTT+TGG | - | chr2_1:4807411-4807430 | None:intergenic | 55.0% |
| TCTTCGCCACCAGGACAAAC+CGG | + | chr2_1:4807415-4807434 | Msa0189390:CDS | 55.0% | |
| ! | CGCCTTATTGAGGCTGGGAT+TGG | + | chr2_1:4808611-4808630 | Msa0189390:CDS | 55.0% |
| CAAGTGGCAGCTAGCATGCA+AGG | + | chr2_1:4808700-4808719 | Msa0189390:CDS | 55.0% | |
| AGTGGCAGCTAGCATGCAAG+GGG | + | chr2_1:4808702-4808721 | Msa0189390:CDS | 55.0% | |
| CAAGGGGAACATCGCTCATG+TGG | + | chr2_1:4808718-4808737 | Msa0189390:CDS | 55.0% | |
| ! | CGTGCTGCCTGGTTTGAAGA+TGG | + | chr2_1:4808803-4808822 | Msa0189390:CDS | 55.0% |
| GGCCAAACTTCTTCGCCACC+AGG | + | chr2_1:4807406-4807425 | Msa0189390:CDS | 60.0% | |
| GGGGAACATCGCTCATGTGG+TGG | + | chr2_1:4808721-4808740 | Msa0189390:CDS | 60.0% | |
| ! | TTGTGCAGAAGCGTGCTGCC+TGG | + | chr2_1:4808792-4808811 | Msa0189390:CDS | 60.0% |
| ! | GTGGGGTGCCCTATGCCTTG+TGG | + | chr2_1:4808389-4808408 | Msa0189390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4805621 | 4809055 | 4805621 | ID=Msa0189390;Name=Msa0189390 |
| chr2_1 | mRNA | 4805621 | 4809055 | 4805621 | ID=Msa0189390-mRNA-1;Parent=Msa0189390;Name=Msa0189390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=70|1|1|1|0.6|0.66|6|160|485 |
| chr2_1 | exon | 4805621 | 4805665 | 4805621 | ID=Msa0189390-mRNA-1:exon:2131;Parent=Msa0189390-mRNA-1 |
| chr2_1 | exon | 4806019 | 4806371 | 4806019 | ID=Msa0189390-mRNA-1:exon:2132;Parent=Msa0189390-mRNA-1 |
| chr2_1 | exon | 4806951 | 4807182 | 4806951 | ID=Msa0189390-mRNA-1:exon:2133;Parent=Msa0189390-mRNA-1 |
| chr2_1 | exon | 4807265 | 4807458 | 4807265 | ID=Msa0189390-mRNA-1:exon:2134;Parent=Msa0189390-mRNA-1 |
| chr2_1 | exon | 4807550 | 4807686 | 4807550 | ID=Msa0189390-mRNA-1:exon:2135;Parent=Msa0189390-mRNA-1 |
| chr2_1 | exon | 4808329 | 4809055 | 4808329 | ID=Msa0189390-mRNA-1:exon:2136;Parent=Msa0189390-mRNA-1 |
| chr2_1 | five_prime_UTR | 4805621 | 4805665 | 4805621 | ID=Msa0189390-mRNA-1:five_prime_utr;Parent=Msa0189390-mRNA-1 |
| chr2_1 | five_prime_UTR | 4806019 | 4806043 | 4806019 | ID=Msa0189390-mRNA-1:five_prime_utr;Parent=Msa0189390-mRNA-1 |
| chr2_1 | CDS | 4806044 | 4806371 | 4806044 | ID=Msa0189390-mRNA-1:cds;Parent=Msa0189390-mRNA-1 |
| chr2_1 | CDS | 4806951 | 4807182 | 4806951 | ID=Msa0189390-mRNA-1:cds;Parent=Msa0189390-mRNA-1 |
| chr2_1 | CDS | 4807265 | 4807458 | 4807265 | ID=Msa0189390-mRNA-1:cds;Parent=Msa0189390-mRNA-1 |
| chr2_1 | CDS | 4807550 | 4807686 | 4807550 | ID=Msa0189390-mRNA-1:cds;Parent=Msa0189390-mRNA-1 |
| chr2_1 | CDS | 4808329 | 4808895 | 4808329 | ID=Msa0189390-mRNA-1:cds;Parent=Msa0189390-mRNA-1 |
| chr2_1 | three_prime_UTR | 4808896 | 4809055 | 4808896 | ID=Msa0189390-mRNA-1:three_prime_utr;Parent=Msa0189390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
