Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309970 | XP_003593129.1 | 97.737 | 486 | 10 | 1 | 1 | 485 | 1 | 486 | 0.0 | 992 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309970 | sp|Q9MA74|SDC1_ARATH | 76.386 | 487 | 108 | 3 | 1 | 485 | 1 | 482 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189390 | Msa0309970 | 0.906601 | 1.246177e-80 | -8.615850e-47 |
| Msa0189420 | Msa0309970 | 0.857462 | 1.605506e-62 | -8.615850e-47 |
| Msa0309970 | Msa0309990 | 0.900363 | 7.895533e-78 | -8.615850e-47 |
| Msa0309970 | Msa0423550 | 0.800940 | 1.138291e-48 | -8.615850e-47 |
| Msa0309970 | Msa0465500 | 0.803525 | 3.344640e-49 | -8.615850e-47 |
| Msa0309970 | Msa0752450 | 0.812467 | 4.178395e-51 | -8.615850e-47 |
| Msa0309970 | Msa0855870 | 0.802647 | 5.080483e-49 | -8.615850e-47 |
| Msa0309970 | Msa1213040 | 0.801245 | 9.861253e-49 | -8.615850e-47 |
| Msa0309970 | Msa1228040 | 0.810497 | 1.119290e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309970 | MtrunA17_Chr2g0278631 | 97.737 | 486 | 10 | 1 | 1 | 485 | 1 | 486 | 0.0 | 992 |
| Msa0309970 | MtrunA17_Chr1g0202041 | 62.687 | 402 | 150 | 0 | 83 | 484 | 109 | 510 | 0.0 | 565 |
| Msa0309970 | MtrunA17_Chr4g0039151 | 56.427 | 459 | 185 | 2 | 29 | 485 | 20 | 465 | 0.0 | 553 |
| Msa0309970 | MtrunA17_Chr1g0202091 | 59.753 | 405 | 163 | 0 | 80 | 484 | 52 | 456 | 0.0 | 543 |
| Msa0309970 | MtrunA17_Chr1g0202071 | 61.867 | 375 | 136 | 1 | 110 | 484 | 37 | 404 | 2.04e-180 | 511 |
| Msa0309970 | MtrunA17_Chr1g0202061 | 64.286 | 336 | 120 | 0 | 149 | 484 | 3 | 338 | 3.23e-171 | 485 |
| Msa0309970 | MtrunA17_Chr6g0479491 | 95.714 | 140 | 6 | 0 | 212 | 351 | 1 | 140 | 4.83e-95 | 283 |
| Msa0309970 | MtrunA17_Chr6g0479501 | 99.270 | 137 | 1 | 0 | 1 | 137 | 1 | 137 | 2.39e-94 | 281 |
| Msa0309970 | MtrunA17_Chr4g0039171 | 61.257 | 191 | 74 | 0 | 294 | 484 | 16 | 206 | 8.05e-86 | 263 |
| Msa0309970 | MtrunA17_Chr4g0039161 | 66.038 | 159 | 54 | 0 | 149 | 307 | 3 | 161 | 3.44e-78 | 241 |
| Msa0309970 | MtrunA17_Chr2g0278611 | 96.262 | 107 | 4 | 0 | 374 | 480 | 7 | 113 | 8.73e-71 | 221 |
| Msa0309970 | MtrunA17_Chr6g0479481 | 97.647 | 85 | 2 | 0 | 401 | 485 | 1 | 85 | 2.84e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309970 | AT1G43710.1 | 76.386 | 487 | 108 | 3 | 1 | 485 | 1 | 482 | 0.0 | 783 |
Find 140 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTTGGATTTCGATTA+TGG | 0.126797 | 2_4:+4801454 | Msa0309970:CDS |
| ATTGGCAGTGTAAGTGTTTC+TGG | 0.141024 | 2_4:+4802849 | Msa0309970:CDS |
| TGGATCTCCAAGGTTGTTTA+TGG | 0.175281 | 2_4:-4801503 | None:intergenic |
| GAAAGCCTCTGTATCCTTTC+CGG | 0.211785 | 2_4:-4803034 | None:intergenic |
| TGCAGGCTACCCCTACAATT+TGG | 0.236167 | 2_4:+4801441 | Msa0309970:intron |
| CAAGGTATACCAAAGGAAAA+TGG | 0.240898 | 2_4:-4803009 | None:intergenic |
| GAAAGGACAAAGTATCATTT+AGG | 0.241696 | 2_4:+4799790 | Msa0309970:CDS |
| CCATTCATTGAAAGCAATTA+TGG | 0.265147 | 2_4:+4801523 | Msa0309970:CDS |
| CACGTTGATGGGGCTTTGTT+TGG | 0.289688 | 2_4:+4802134 | Msa0309970:CDS |
| AGAGAAAAGAGAAATAGTTC+TGG | 0.308912 | 2_4:+4799648 | Msa0309970:CDS |
| GGCTTCTTAAAAGTAACTTT+TGG | 0.313494 | 2_4:-4802825 | None:intergenic |
| CTCTGTTGTGGATAACAAAA+TGG | 0.320166 | 2_4:+4799465 | Msa0309970:exon |
| ATACTTTGTCCTTTCGGTTA+AGG | 0.320246 | 2_4:-4799782 | None:intergenic |
| GTAATTTCATCATCTGCTTC+TGG | 0.325522 | 2_4:-4799709 | None:intergenic |
| AAGATTGAGACTCTTAATTC+TGG | 0.327843 | 2_4:+4801854 | Msa0309970:CDS |
| GTCAATGGTTTGAGCACTAA+TGG | 0.335526 | 2_4:+4799508 | Msa0309970:CDS |
| ATGTTCACATTTATAATTGC+CGG | 0.344490 | 2_4:-4801929 | None:intergenic |
| TTCCTGGTGGCGAAGAAGTT+TGG | 0.349106 | 2_4:-4801903 | None:intergenic |
| AGCATATTAATGCTCTTTCC+AGG | 0.361100 | 2_4:+4802925 | Msa0309970:CDS |
| CGCAAGGTATTCCACATTCC+TGG | 0.361243 | 2_4:-4802943 | None:intergenic |
| TTTCTCCAGTTCCCACAATC+TGG | 0.367009 | 2_4:-4801590 | None:intergenic |
| CCATAATTGCTTTCAATGAA+TGG | 0.369361 | 2_4:-4801523 | None:intergenic |
| TAAATGATACTTTGTCCTTT+CGG | 0.372149 | 2_4:-4799788 | None:intergenic |
| ACTTACAGAAGAATGAGATT+TGG | 0.373288 | 2_4:-4799091 | None:intergenic |
| GGTTGGAAGTGCTGATGTTT+TGG | 0.376129 | 2_4:+4799486 | Msa0309970:CDS |
| CACCAATCCCAGCCTCAATA+AGG | 0.379909 | 2_4:-4803106 | None:intergenic |
| AGCTTCTCAATAGTGACATT+TGG | 0.398828 | 2_4:-4803242 | None:intergenic |
| TCTGTATCCTTTCCGGTTCA+AGG | 0.400166 | 2_4:-4803027 | None:intergenic |
| ATCTCCACGGCATCTTAGTT+GGG | 0.400781 | 2_4:+4801656 | Msa0309970:CDS |
| AATCTCCACGGCATCTTAGT+TGG | 0.400971 | 2_4:+4801655 | Msa0309970:CDS |
| TACAACGGTAGTTGTTTGTT+TGG | 0.402412 | 2_4:+4803416 | Msa0309970:three_prime_UTR |
| GTACTTACTCGGCCTGCTAT+TGG | 0.402769 | 2_4:+4803524 | Msa0309970:three_prime_UTR |
| CGGCGATCGTGATGCTCATA+TGG | 0.404054 | 2_4:+4799732 | Msa0309970:CDS |
| GATTGATTGTGACGATTTCA+AGG | 0.407598 | 2_4:+4801880 | Msa0309970:CDS |
| TAATCGAAATCCAAATTGTA+GGG | 0.409133 | 2_4:-4801451 | None:intergenic |
| GCAGTTTGAAGTTGGCGTTT+TGG | 0.409772 | 2_4:+4801558 | Msa0309970:CDS |
| TCCTTTGGTATACCTTGAAC+CGG | 0.409987 | 2_4:+4803015 | Msa0309970:CDS |
| CGCCTTATTGAGGCTGGGAT+TGG | 0.413634 | 2_4:+4803104 | Msa0309970:CDS |
| GAGAAAAGAGAAATAGTTCT+GGG | 0.419070 | 2_4:+4799649 | Msa0309970:CDS |
| ATAATCGAAATCCAAATTGT+AGG | 0.431275 | 2_4:-4801452 | None:intergenic |
| GCACTTACTCGTTTCACAAA+AGG | 0.434352 | 2_4:-4802167 | None:intergenic |
| CACATTCCATTCTGTACATA+CGG | 0.437616 | 2_4:-4801829 | None:intergenic |
| GAAGCAGATGATGAAATTAC+CGG | 0.438465 | 2_4:+4799712 | Msa0309970:CDS |
| GTTTGCCAGATTGTGGGAAC+TGG | 0.438579 | 2_4:+4801585 | Msa0309970:CDS |
| TGGATTGGTTTGCCAGATTG+TGG | 0.440343 | 2_4:+4801578 | Msa0309970:CDS |
| AAAGACCGCCTTATTGAGGC+TGG | 0.449109 | 2_4:+4803098 | Msa0309970:CDS |
| GGTTCTACATCCACGTTGAT+GGG | 0.451639 | 2_4:+4802123 | Msa0309970:CDS |
| AAGGTATACCAAAGGAAAAT+GGG | 0.454267 | 2_4:-4803008 | None:intergenic |
| ACAATCATGGGCAGTCGAAA+TGG | 0.457766 | 2_4:+4802978 | Msa0309970:CDS |
| TGTTTCTGGCCACAAATTTG+TGG | 0.463956 | 2_4:+4802863 | Msa0309970:CDS |
| AGGTTCTACATCCACGTTGA+TGG | 0.464905 | 2_4:+4802122 | Msa0309970:CDS |
| CACTCCCGGCAGTTTGAAGT+TGG | 0.465122 | 2_4:+4801550 | Msa0309970:CDS |
| TGTGGAATACCTTGCGTCTA+GGG | 0.469635 | 2_4:+4802950 | Msa0309970:CDS |
| TTGTGCAGAAGCGTGCTGCC+TGG | 0.472473 | 2_4:+4803285 | Msa0309970:CDS |
| GTCTAGGGATGCTACAATCA+TGG | 0.475937 | 2_4:+4802965 | Msa0309970:CDS |
| GGATTGGTTTGCCAGATTGT+GGG | 0.481071 | 2_4:+4801579 | Msa0309970:CDS |
| AGCTGTGGATGATCTTGATC+TGG | 0.487663 | 2_4:+4802061 | Msa0309970:CDS |
| GAGATTTGGAATCGAACAAA+GGG | 0.490635 | 2_4:-4799077 | None:intergenic |
| GAAACACTTACACTGCCAAT+AGG | 0.491831 | 2_4:-4802846 | None:intergenic |
| TGTCAGCTGTTCCTCTGTTG+TGG | 0.493820 | 2_4:+4799453 | Msa0309970:intron |
| CAAGTGGCAGCTAGCATGCA+AGG | 0.495774 | 2_4:+4803193 | Msa0309970:CDS |
| GCAATTATGGTGTCCACTCC+CGG | 0.496665 | 2_4:+4801536 | Msa0309970:CDS |
| ATGTGGAATACCTTGCGTCT+AGG | 0.497620 | 2_4:+4802949 | Msa0309970:CDS |
| ATGCCATTGTCTGCAACTAC+AGG | 0.502844 | 2_4:-4799592 | None:intergenic |
| GCTGACACATCAAAATCATC+AGG | 0.505859 | 2_4:-4799547 | None:intergenic |
| GAGGCATACAAAATCCCATC+TGG | 0.510600 | 2_4:-4801773 | None:intergenic |
| AAACGCCAACTTCAAACTGC+CGG | 0.513920 | 2_4:-4801555 | None:intergenic |
| TGCTCATATGGCAAGTGTGC+TGG | 0.514546 | 2_4:+4799744 | Msa0309970:CDS |
| GGCCAAACTTCTTCGCCACC+AGG | 0.519246 | 2_4:+4801901 | Msa0309970:CDS |
| ACATCTGATGCTATGCAATA+CGG | 0.519849 | 2_4:-4803329 | None:intergenic |
| AGCTGCCCGTATGTACAGAA+TGG | 0.519902 | 2_4:+4801823 | Msa0309970:CDS |
| GTTTCTGGCCACAAATTTGT+GGG | 0.520034 | 2_4:+4802864 | Msa0309970:CDS |
| CTTCAAAGACCGCCTTATTG+AGG | 0.520811 | 2_4:+4803094 | Msa0309970:CDS |
| TAGGGCACCCCACAAATTTG+TGG | 0.531810 | 2_4:-4802872 | None:intergenic |
| CAACTTCAAACTGCCGGGAG+TGG | 0.533328 | 2_4:-4801549 | None:intergenic |
| ATACAGAGGCTTTCAGAAAG+AGG | 0.543655 | 2_4:+4803043 | Msa0309970:CDS |
| CGTGCTGCCTGGTTTGAAGA+TGG | 0.544092 | 2_4:+4803296 | Msa0309970:CDS |
| TAATGCTCTTTCCAGGAATG+TGG | 0.546453 | 2_4:+4802932 | Msa0309970:CDS |
| ATAACAAACTGCGGCACAGA+AGG | 0.546572 | 2_4:+4801631 | Msa0309970:CDS |
| AACGCCAACTTCAAACTGCC+GGG | 0.553686 | 2_4:-4801554 | None:intergenic |
| AAGTGGCAGCTAGCATGCAA+GGG | 0.555226 | 2_4:+4803194 | Msa0309970:CDS |
| AACAATATATGACCAATAGC+AGG | 0.555266 | 2_4:-4803536 | None:intergenic |
| AGGAGAGAGGTGTTACCAGA+TGG | 0.556029 | 2_4:+4801758 | Msa0309970:intron |
| TTTGCAGGTACAACTGTGAA+AGG | 0.557302 | 2_4:+4802038 | Msa0309970:intron |
| CAACTACCGTTGTAAACTCT+AGG | 0.557829 | 2_4:-4803407 | None:intergenic |
| TGGTGTGCAGATAACAAGAT+TGG | 0.558215 | 2_4:+4802902 | Msa0309970:CDS |
| AGGCACTGGATCTTTGATGA+TGG | 0.564483 | 2_4:-4799569 | None:intergenic |
| TCTGCAACTACAGGAGGCAC+TGG | 0.566407 | 2_4:-4799583 | None:intergenic |
| CATATGAGCATCACGATCGC+CGG | 0.568671 | 2_4:-4799731 | None:intergenic |
| TGGTATACCTTGAACCGGAA+AGG | 0.568933 | 2_4:+4803020 | Msa0309970:CDS |
| GCAATTATAAATGTGAACAT+AGG | 0.571006 | 2_4:+4801932 | Msa0309970:CDS |
| GTTGTGGATAACAAAATGGT+TGG | 0.572307 | 2_4:+4799469 | Msa0309970:exon |
| CGTATAAATTCTTCATCATG+TGG | 0.574666 | 2_4:-4803170 | None:intergenic |
| ATGAAGAATTTATACGCAAG+TGG | 0.575001 | 2_4:+4803177 | Msa0309970:CDS |
| ACCAAAGGAAAATGGGAGCA+TGG | 0.576829 | 2_4:-4803001 | None:intergenic |
| AAGGAGGAGGCAAAGACCAA+TGG | 0.579696 | 2_4:+4799619 | Msa0309970:CDS |
| TCTAGGGATGCTACAATCAT+GGG | 0.583702 | 2_4:+4802966 | Msa0309970:CDS |
| GGAGAGAGGTGTTACCAGAT+GGG | 0.584932 | 2_4:+4801759 | Msa0309970:intron |
| ATCTGCACACCACAAGGCAT+AGG | 0.585285 | 2_4:-4802891 | None:intergenic |
| TCTGCACACCACAAGGCATA+GGG | 0.585390 | 2_4:-4802890 | None:intergenic |
| TGAGATTTGGAATCGAACAA+AGG | 0.586672 | 2_4:-4799078 | None:intergenic |
| CTTGTTATCTGCACACCACA+AGG | 0.586677 | 2_4:-4802897 | None:intergenic |
| AAGACCGCCTTATTGAGGCT+GGG | 0.598414 | 2_4:+4803099 | Msa0309970:CDS |
| CAAGGGGAACATCGCTCATG+TGG | 0.599449 | 2_4:+4803211 | Msa0309970:CDS |
| CTCCGTGACTTCTAGACACG+TGG | 0.601099 | 2_4:-4799686 | None:intergenic |
| GGCACAGAAGGCAATCTCCA+CGG | 0.601970 | 2_4:+4801643 | Msa0309970:CDS |
| TTTCAATGAATGGATCTCCA+AGG | 0.602183 | 2_4:-4801513 | None:intergenic |
| TATTGCATAGCATCAGATGT+AGG | 0.606217 | 2_4:+4803332 | Msa0309970:CDS |
| CACCACGTGTCTAGAAGTCA+CGG | 0.612407 | 2_4:+4799684 | Msa0309970:CDS |
| TCCGGTTCAAGGTATACCAA+AGG | 0.613210 | 2_4:-4803016 | None:intergenic |
| TCTTTGCTATCGTACTTACT+CGG | 0.615895 | 2_4:+4803513 | Msa0309970:three_prime_UTR |
| AAATGTGCCATCTTCAAACC+AGG | 0.619279 | 2_4:-4803303 | None:intergenic |
| ACATTCCATTCTGTACATAC+GGG | 0.622283 | 2_4:-4801828 | None:intergenic |
| ATTACTTATGCAGAGCACAT+AGG | 0.622908 | 2_4:-4803367 | None:intergenic |
| CAATGGCATTGACAAGGAGG+AGG | 0.624325 | 2_4:+4799606 | Msa0309970:CDS |
| GAGGAGGCAAAGACCAATGG+AGG | 0.626032 | 2_4:+4799622 | Msa0309970:CDS |
| ACAGAAAATCCTTAACCGAA+AGG | 0.628041 | 2_4:+4799773 | Msa0309970:CDS |
| GTTCTACATCCACGTTGATG+GGG | 0.628041 | 2_4:+4802124 | Msa0309970:CDS |
| GTGGGGTGCCCTATGCCTTG+TGG | 0.629093 | 2_4:+4802882 | Msa0309970:CDS |
| TGCAGACAATGGCATTGACA+AGG | 0.630101 | 2_4:+4799600 | Msa0309970:CDS |
| GGGGAACATCGCTCATGTGG+TGG | 0.630496 | 2_4:+4803214 | Msa0309970:CDS |
| CCTCCTGTAGTTGCAGACAA+TGG | 0.632901 | 2_4:+4799589 | Msa0309970:CDS |
| AGTGGCAGCTAGCATGCAAG+GGG | 0.633178 | 2_4:+4803195 | Msa0309970:CDS |
| CTAACCCAACTAAGATGCCG+TGG | 0.634841 | 2_4:-4801660 | None:intergenic |
| GCAGCACGGTTGTATTTGAG+CGG | 0.636417 | 2_4:+4803147 | Msa0309970:CDS |
| TTTCTGGCCACAAATTTGTG+GGG | 0.645464 | 2_4:+4802865 | Msa0309970:CDS |
| CCATTGTCTGCAACTACAGG+AGG | 0.649629 | 2_4:-4799589 | None:intergenic |
| TACAACTGTGAAAGGAGCTG+TGG | 0.649687 | 2_4:+4802046 | Msa0309970:CDS |
| TTGTAGCATCCCTAGACGCA+AGG | 0.653494 | 2_4:-4802959 | None:intergenic |
| GCTTAATGAGCTCAGCAGCA+CGG | 0.655655 | 2_4:+4803133 | Msa0309970:CDS |
| AATCGAAATCCAAATTGTAG+GGG | 0.668248 | 2_4:-4801450 | None:intergenic |
| AGACAATGGCATTGACAAGG+AGG | 0.668839 | 2_4:+4799603 | Msa0309970:CDS |
| CAATCCCAGCCTCAATAAGG+CGG | 0.669234 | 2_4:-4803103 | None:intergenic |
| TGAATAATGTGAATCTTGTG+AGG | 0.674099 | 2_4:-4801792 | None:intergenic |
| AAGAGGTACAGAAATGCTTG+CGG | 0.690246 | 2_4:+4803060 | Msa0309970:CDS |
| TGGGGCTATATAACAAACTG+CGG | 0.697601 | 2_4:+4801622 | Msa0309970:CDS |
| CAAACAAAGCCCCATCAACG+TGG | 0.706029 | 2_4:-4802133 | None:intergenic |
| TTGAACCGGAAAGGATACAG+AGG | 0.728176 | 2_4:+4803029 | Msa0309970:CDS |
| ACAAAGGGAGAAGAAAACAG+TGG | 0.734404 | 2_4:-4799062 | None:intergenic |
| ATAGAACCTAGAGTTTACAA+CGG | 0.759152 | 2_4:+4803401 | Msa0309970:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTACTTCAAAAAA+TGG | - | chr2_4:4801200-4801219 | None:intergenic | 10.0% |
| !! | TTTACATAATCAATTGATAA+TGG | - | chr2_4:4799158-4799177 | None:intergenic | 15.0% |
| !! | TTTAATTCATTATGTAAATC+AGG | + | chr2_4:4799196-4799215 | Msa0309970:intron | 15.0% |
| !! | AAGAGTAAATCATAAAAAAT+GGG | - | chr2_4:4799414-4799433 | None:intergenic | 15.0% |
| !! | TAAGAGTAAATCATAAAAAA+TGG | - | chr2_4:4799415-4799434 | None:intergenic | 15.0% |
| !!! | TTATGATTTACTCTTAATTT+TGG | + | chr2_4:4799419-4799438 | Msa0309970:intron | 15.0% |
| !!! | TGAAGTAATTTTATTTTACT+AGG | + | chr2_4:4801205-4801224 | Msa0309970:intron | 15.0% |
| !! | TGCTATATTATAGAAAATTA+TGG | + | chr2_4:4801285-4801304 | Msa0309970:intron | 15.0% |
| !! | TATATTATAGAAAATTATGG+TGG | + | chr2_4:4801288-4801307 | Msa0309970:intron | 15.0% |
| !! | ATCATATAATAATTGGAATA+AGG | - | chr2_4:4802421-4802440 | None:intergenic | 15.0% |
| !! | AAGTTTGATCATATAATAAT+TGG | - | chr2_4:4802428-4802447 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTAAATATAACC+AGG | - | chr2_4:4802598-4802617 | None:intergenic | 15.0% |
| !! | TTGAAAATGTTGTAATAAAC+AGG | + | chr2_4:4799300-4799319 | Msa0309970:intron | 20.0% |
| !!! | ATTTGAAATAGAATGATCAA+GGG | - | chr2_4:4800380-4800399 | None:intergenic | 20.0% |
| !!! | TCTTTTATTACCAAGTATTA+TGG | + | chr2_4:4800743-4800762 | Msa0309970:intron | 20.0% |
| !! | ATTACTTCAAAAAATGGAAA+TGG | - | chr2_4:4801194-4801213 | None:intergenic | 20.0% |
| !! | CATAAATTAAATGAGATGAT+AGG | - | chr2_4:4801411-4801430 | None:intergenic | 20.0% |
| !! | ATTTATGAAAAATCTATTGC+AGG | + | chr2_4:4801424-4801443 | Msa0309970:intron | 20.0% |
| !! | TTTGTAAAGAACCTAAAATA+TGG | + | chr2_4:4801719-4801738 | Msa0309970:intron | 20.0% |
| !!! | AGTCATTTAAACCATATTTT+AGG | - | chr2_4:4801733-4801752 | None:intergenic | 20.0% |
| !!! | AGACTTAAATTTGAAATAAG+GGG | - | chr2_4:4802553-4802572 | None:intergenic | 20.0% |
| !!! | CAGACTTAAATTTGAAATAA+GGG | - | chr2_4:4802554-4802573 | None:intergenic | 20.0% |
| !!! | TCAGACTTAAATTTGAAATA+AGG | - | chr2_4:4802555-4802574 | None:intergenic | 20.0% |
| ! | GCAAAATCAATTATAATCTC+TGG | - | chr2_4:4799261-4799280 | None:intergenic | 25.0% |
| ! | TAAATGATACTTTGTCCTTT+CGG | - | chr2_4:4799791-4799810 | None:intergenic | 25.0% |
| ! | ATTTATGTCATTGTTGTATC+TGG | + | chr2_4:4799862-4799881 | Msa0309970:intron | 25.0% |
| ! | TTTATGTCATTGTTGTATCT+GGG | + | chr2_4:4799863-4799882 | Msa0309970:intron | 25.0% |
| ! | AGAAAATAGTGTTTACTAGT+AGG | + | chr2_4:4799916-4799935 | Msa0309970:intron | 25.0% |
| !!! | TTTTTTTTAGGGCTTGTAAT+TGG | - | chr2_4:4799985-4800004 | None:intergenic | 25.0% |
| ! | ATCAAAACCGAATTATAAAG+TGG | + | chr2_4:4800165-4800184 | Msa0309970:intron | 25.0% |
| ! | AACCAAACCACTTTATAATT+CGG | - | chr2_4:4800175-4800194 | None:intergenic | 25.0% |
| ! | ATTCATTAAAAGCTTCTTCA+GGG | - | chr2_4:4800223-4800242 | None:intergenic | 25.0% |
| !!! | GTTACTATTTTTTCAGCAAA+TGG | + | chr2_4:4800309-4800328 | Msa0309970:intron | 25.0% |
| !! | GATTTGAAATAGAATGATCA+AGG | - | chr2_4:4800381-4800400 | None:intergenic | 25.0% |
| !!! | TTAAGTTCTAGATAACTCAA+CGG | + | chr2_4:4800453-4800472 | Msa0309970:intron | 25.0% |
| ! | CTGTAAAATTTGTCAGAAAT+AGG | + | chr2_4:4800527-4800546 | Msa0309970:intron | 25.0% |
| ! | AAAGTAGTATATTGTATGGT+TGG | + | chr2_4:4800582-4800601 | Msa0309970:intron | 25.0% |
| ! | TATATTGTATGGTTGGAAAT+TGG | + | chr2_4:4800589-4800608 | Msa0309970:intron | 25.0% |
| ! | TTCATTCTTTCTCAAACATA+TGG | + | chr2_4:4800689-4800708 | Msa0309970:intron | 25.0% |
| ! | TCATTCTTTCTCAAACATAT+GGG | + | chr2_4:4800690-4800709 | Msa0309970:intron | 25.0% |
| !!! | TTTTTTTCCAGAGTAAAATG+AGG | - | chr2_4:4800791-4800810 | None:intergenic | 25.0% |
| !! | CTCTGGAAAAAAAGTAAATA+TGG | + | chr2_4:4800798-4800817 | Msa0309970:intron | 25.0% |
| !! | AAGGATTCAAATGATTTTCT+TGG | - | chr2_4:4800847-4800866 | None:intergenic | 25.0% |
| ! | AGTCTATAGAATGATCTTAT+GGG | - | chr2_4:4801071-4801090 | None:intergenic | 25.0% |
| ! | TAGTCTATAGAATGATCTTA+TGG | - | chr2_4:4801072-4801091 | None:intergenic | 25.0% |
| !! | ATTGTAATCTTGCATGTTTT+TGG | + | chr2_4:4801112-4801131 | Msa0309970:intron | 25.0% |
| !! | ATCAATTAATGAGTTGGATA+GGG | + | chr2_4:4801259-4801278 | Msa0309970:intron | 25.0% |
| ! | TAATCGAAATCCAAATTGTA+GGG | - | chr2_4:4801454-4801473 | None:intergenic | 25.0% |
| ! | ATAATCGAAATCCAAATTGT+AGG | - | chr2_4:4801455-4801474 | None:intergenic | 25.0% |
| ! | TACAATTTGGATTTCGATTA+TGG | + | chr2_4:4801454-4801473 | Msa0309970:CDS | 25.0% |
| ! | ATGTTCACATTTATAATTGC+CGG | - | chr2_4:4801932-4801951 | None:intergenic | 25.0% |
| ! | GCAATTATAAATGTGAACAT+AGG | + | chr2_4:4801932-4801951 | Msa0309970:CDS | 25.0% |
| ! | ATATGCAAACAACCAAAAAA+TGG | - | chr2_4:4802294-4802313 | None:intergenic | 25.0% |
| ! | TGCTCACATTTGTATAAATT+AGG | - | chr2_4:4802498-4802517 | None:intergenic | 25.0% |
| ! | TTGGACAATATGTTATTGTT+TGG | + | chr2_4:4802657-4802676 | Msa0309970:intron | 25.0% |
| ! | GGATACAAAATAACAGAATA+TGG | - | chr2_4:4802731-4802750 | None:intergenic | 25.0% |
| ! | AAAATAAATTGTGCTTTGTC+AGG | + | chr2_4:4802800-4802819 | Msa0309970:intron | 25.0% |
| !!! | TTTGTTTGGAGTTTGTTTTT+TGG | + | chr2_4:4803430-4803449 | Msa0309970:three_prime_UTR | 25.0% |
| !!! | GTTTTTTGGAGTTTTTTATG+TGG | + | chr2_4:4803444-4803463 | Msa0309970:three_prime_UTR | 25.0% |
| ACTTACAGAAGAATGAGATT+TGG | - | chr2_4:4799094-4799113 | None:intergenic | 30.0% | |
| AAACAGGCTCTATATATTTG+TGG | + | chr2_4:4799316-4799335 | Msa0309970:intron | 30.0% | |
| ! | GTGAAACATTTTCTTTTTGC+CGG | + | chr2_4:4799341-4799360 | Msa0309970:intron | 30.0% |
| AGAGAAAAGAGAAATAGTTC+TGG | + | chr2_4:4799648-4799667 | Msa0309970:CDS | 30.0% | |
| GAGAAAAGAGAAATAGTTCT+GGG | + | chr2_4:4799649-4799668 | Msa0309970:CDS | 30.0% | |
| ! | GAAAGGACAAAGTATCATTT+AGG | + | chr2_4:4799790-4799809 | Msa0309970:CDS | 30.0% |
| AATGCAATCAGCAAAGTAAA+AGG | - | chr2_4:4799840-4799859 | None:intergenic | 30.0% | |
| TTATGTCATTGTTGTATCTG+GGG | + | chr2_4:4799864-4799883 | Msa0309970:intron | 30.0% | |
| AACCGAATTATAAAGTGGTT+TGG | + | chr2_4:4800170-4800189 | Msa0309970:intron | 30.0% | |
| CATTCATTAAAAGCTTCTTC+AGG | - | chr2_4:4800224-4800243 | None:intergenic | 30.0% | |
| AGGGAAATAAAGAACATGAA+TGG | - | chr2_4:4800361-4800380 | None:intergenic | 30.0% | |
| CAAATCTTTATTCCCAGATT+AGG | + | chr2_4:4800395-4800414 | Msa0309970:intron | 30.0% | |
| !! | TAAGTTCTAGATAACTCAAC+GGG | + | chr2_4:4800454-4800473 | Msa0309970:intron | 30.0% |
| ! | GGTTACTTTCTGTACATAAA+GGG | + | chr2_4:4800475-4800494 | Msa0309970:intron | 30.0% |
| GAAATAGGATACTAAGATGT+AGG | + | chr2_4:4800542-4800561 | Msa0309970:intron | 30.0% | |
| GGGTAAAGTAGTATATTGTA+TGG | + | chr2_4:4800578-4800597 | Msa0309970:intron | 30.0% | |
| ACAAATAATCTGATAGACTC+TGG | - | chr2_4:4800723-4800742 | None:intergenic | 30.0% | |
| AAGATCATTCTATAGACTAG+AGG | + | chr2_4:4801073-4801092 | Msa0309970:intron | 30.0% | |
| AGATCATTCTATAGACTAGA+GGG | + | chr2_4:4801074-4801093 | Msa0309970:intron | 30.0% | |
| !!! | ATCTTGCATGTTTTTGGAAT+TGG | + | chr2_4:4801118-4801137 | Msa0309970:intron | 30.0% |
| CTAGAGATCAATTAATGAGT+TGG | + | chr2_4:4801253-4801272 | Msa0309970:intron | 30.0% | |
| ! | GATCAATTAATGAGTTGGAT+AGG | + | chr2_4:4801258-4801277 | Msa0309970:intron | 30.0% |
| AATCGAAATCCAAATTGTAG+GGG | - | chr2_4:4801453-4801472 | None:intergenic | 30.0% | |
| CCATAATTGCTTTCAATGAA+TGG | - | chr2_4:4801526-4801545 | None:intergenic | 30.0% | |
| CCATTCATTGAAAGCAATTA+TGG | + | chr2_4:4801523-4801542 | Msa0309970:CDS | 30.0% | |
| ! | ATGGTTTAAATGACTTTTGC+AGG | + | chr2_4:4801738-4801757 | Msa0309970:intron | 30.0% |
| TGAATAATGTGAATCTTGTG+AGG | - | chr2_4:4801795-4801814 | None:intergenic | 30.0% | |
| AAGATTGAGACTCTTAATTC+TGG | + | chr2_4:4801854-4801873 | Msa0309970:CDS | 30.0% | |
| ACCAAAAGAATGAAGATGAT+GGG | - | chr2_4:4801997-4802016 | None:intergenic | 30.0% | |
| AACCAAAAGAATGAAGATGA+TGG | - | chr2_4:4801998-4802017 | None:intergenic | 30.0% | |
| ! | TCATAGAACTGAAATTTTGC+AGG | + | chr2_4:4802023-4802042 | Msa0309970:intron | 30.0% |
| TTACAAAAACTTGAAGAAGC+TGG | + | chr2_4:4802086-4802105 | Msa0309970:CDS | 30.0% | |
| AATGTTACACGATTTACTCA+TGG | - | chr2_4:4802201-4802220 | None:intergenic | 30.0% | |
| ACATTCTCTATCAGAACATA+TGG | - | chr2_4:4802258-4802277 | None:intergenic | 30.0% | |
| TGGTGACTATTAGTAAGAAA+CGG | + | chr2_4:4802525-4802544 | Msa0309970:intron | 30.0% | |
| ! | ATTTTGTCTTTATTCTGACC+TGG | + | chr2_4:4802577-4802596 | Msa0309970:intron | 30.0% |
| CTTTGTCAATACATCTATGT+TGG | + | chr2_4:4802638-4802657 | Msa0309970:intron | 30.0% | |
| ! | GGCTTCTTAAAAGTAACTTT+TGG | - | chr2_4:4802828-4802847 | None:intergenic | 30.0% |
| !!! | GTTACTTTTAAGAAGCCTAT+TGG | + | chr2_4:4802831-4802850 | Msa0309970:CDS | 30.0% |
| AAGGTATACCAAAGGAAAAT+GGG | - | chr2_4:4803011-4803030 | None:intergenic | 30.0% | |
| CGTATAAATTCTTCATCATG+TGG | - | chr2_4:4803173-4803192 | None:intergenic | 30.0% | |
| ATGAAGAATTTATACGCAAG+TGG | + | chr2_4:4803177-4803196 | Msa0309970:CDS | 30.0% | |
| ATAGAACCTAGAGTTTACAA+CGG | + | chr2_4:4803401-4803420 | Msa0309970:three_prime_UTR | 30.0% | |
| ! | GAGATTTGGAATCGAACAAA+GGG | - | chr2_4:4799080-4799099 | None:intergenic | 35.0% |
| ! | TGAGATTTGGAATCGAACAA+AGG | - | chr2_4:4799081-4799100 | None:intergenic | 35.0% |
| ! | TTTTCTTTTTGCCGGCATTT+TGG | + | chr2_4:4799349-4799368 | Msa0309970:intron | 35.0% |
| ! | TTTCTTTTTGCCGGCATTTT+GGG | + | chr2_4:4799350-4799369 | Msa0309970:intron | 35.0% |
| ACTAATGAATCCCAAAATGC+CGG | - | chr2_4:4799363-4799382 | None:intergenic | 35.0% | |
| !! | CATTTTGTTATCCACAACAG+AGG | - | chr2_4:4799467-4799486 | None:intergenic | 35.0% |
| CTCTGTTGTGGATAACAAAA+TGG | + | chr2_4:4799465-4799484 | Msa0309970:exon | 35.0% | |
| GTTGTGGATAACAAAATGGT+TGG | + | chr2_4:4799469-4799488 | Msa0309970:exon | 35.0% | |
| ! | TCTTTTCTCTTTTCCTCCAT+TGG | - | chr2_4:4799638-4799657 | None:intergenic | 35.0% |
| GTAATTTCATCATCTGCTTC+TGG | - | chr2_4:4799712-4799731 | None:intergenic | 35.0% | |
| GAAGCAGATGATGAAATTAC+CGG | + | chr2_4:4799712-4799731 | Msa0309970:CDS | 35.0% | |
| ! | GGTTAAGGATTTTCTGTATC+TGG | - | chr2_4:4799770-4799789 | None:intergenic | 35.0% |
| ACAGAAAATCCTTAACCGAA+AGG | + | chr2_4:4799773-4799792 | Msa0309970:CDS | 35.0% | |
| ATACTTTGTCCTTTCGGTTA+AGG | - | chr2_4:4799785-4799804 | None:intergenic | 35.0% | |
| GCAAAGTAAAAGGATCAAGA+GGG | - | chr2_4:4799830-4799849 | None:intergenic | 35.0% | |
| AGCAAAGTAAAAGGATCAAG+AGG | - | chr2_4:4799831-4799850 | None:intergenic | 35.0% | |
| TATGTCATTGTTGTATCTGG+GGG | + | chr2_4:4799865-4799884 | Msa0309970:intron | 35.0% | |
| !! | GTTGTCACAAACCTTTTTCA+GGG | - | chr2_4:4800122-4800141 | None:intergenic | 35.0% |
| ! | AGTTGTCACAAACCTTTTTC+AGG | - | chr2_4:4800123-4800142 | None:intergenic | 35.0% |
| TTGAGCTTACTTCCTAATCT+GGG | - | chr2_4:4800410-4800429 | None:intergenic | 35.0% | |
| ATTGAGCTTACTTCCTAATC+TGG | - | chr2_4:4800411-4800430 | None:intergenic | 35.0% | |
| TCAATTGTGTCTGTAGGAAA+TGG | + | chr2_4:4800426-4800445 | Msa0309970:intron | 35.0% | |
| ! | GGGTTACTTTCTGTACATAA+AGG | + | chr2_4:4800474-4800493 | Msa0309970:intron | 35.0% |
| ATGTAGGAACTAGAAAGACA+GGG | + | chr2_4:4800558-4800577 | Msa0309970:intron | 35.0% | |
| !! | TATGGTTGGAAATTGGTCTT+AGG | + | chr2_4:4800596-4800615 | Msa0309970:intron | 35.0% |
| !! | ATGGTTGGAAATTGGTCTTA+GGG | + | chr2_4:4800597-4800616 | Msa0309970:intron | 35.0% |
| CCAGAATAAGCCATAATACT+TGG | - | chr2_4:4800756-4800775 | None:intergenic | 35.0% | |
| CCAAGTATTATGGCTTATTC+TGG | + | chr2_4:4800753-4800772 | Msa0309970:intron | 35.0% | |
| AGTATTATGGCTTATTCTGG+AGG | + | chr2_4:4800756-4800775 | Msa0309970:intron | 35.0% | |
| ! | AATAGCACCTCATTTTACTC+TGG | + | chr2_4:4800781-4800800 | Msa0309970:intron | 35.0% |
| TAAAACACTAGAGCAAAGTC+TGG | - | chr2_4:4800877-4800896 | None:intergenic | 35.0% | |
| !! | TGGTGCTATTACAATTTCAC+TGG | + | chr2_4:4800936-4800955 | Msa0309970:intron | 35.0% |
| GTCATATCTCACTAAGTACA+TGG | - | chr2_4:4801322-4801341 | None:intergenic | 35.0% | |
| GTACTTAGTGAGATATGACT+CGG | + | chr2_4:4801323-4801342 | Msa0309970:intron | 35.0% | |
| GTTGAAGAAATGAGCTTCAA+CGG | - | chr2_4:4801367-4801386 | None:intergenic | 35.0% | |
| ! | CACTTTTCCATAAACAACCT+TGG | + | chr2_4:4801496-4801515 | Msa0309970:CDS | 35.0% |
| TTTCAATGAATGGATCTCCA+AGG | - | chr2_4:4801516-4801535 | None:intergenic | 35.0% | |
| AACTGGAGAAAAATGAGTAC+TGG | + | chr2_4:4801602-4801621 | Msa0309970:CDS | 35.0% | |
| ACTGGAGAAAAATGAGTACT+GGG | + | chr2_4:4801603-4801622 | Msa0309970:CDS | 35.0% | |
| ACATTCCATTCTGTACATAC+GGG | - | chr2_4:4801831-4801850 | None:intergenic | 35.0% | |
| CACATTCCATTCTGTACATA+CGG | - | chr2_4:4801832-4801851 | None:intergenic | 35.0% | |
| GATTGATTGTGACGATTTCA+AGG | + | chr2_4:4801880-4801899 | Msa0309970:CDS | 35.0% | |
| !!! | TTATAATTGCCGGTTTTTCC+TGG | - | chr2_4:4801922-4801941 | None:intergenic | 35.0% |
| !! | AAAAGAATGAAGATGATGGG+AGG | - | chr2_4:4801994-4802013 | None:intergenic | 35.0% |
| ! | TCCCATCATCTTCATTCTTT+TGG | + | chr2_4:4801993-4802012 | Msa0309970:intron | 35.0% |
| !!! | CATCTTCATTCTTTTGGTTC+TGG | + | chr2_4:4801999-4802018 | Msa0309970:intron | 35.0% |
| ! | TGAAGAAGCTGGATTTTCAA+AGG | + | chr2_4:4802097-4802116 | Msa0309970:CDS | 35.0% |
| TCTATCAGAACATATGGAGA+TGG | - | chr2_4:4802252-4802271 | None:intergenic | 35.0% | |
| !!! | GATGTGTCATTGCCATTTTT+TGG | + | chr2_4:4802279-4802298 | Msa0309970:intron | 35.0% |
| GATATTTGCGCACTACATTA+TGG | + | chr2_4:4802316-4802335 | Msa0309970:intron | 35.0% | |
| ! | GCATTTTCACTTCAGCAATA+AGG | + | chr2_4:4802381-4802400 | Msa0309970:intron | 35.0% |
| ACAAATGTGAGCATGACTAT+TGG | + | chr2_4:4802505-4802524 | Msa0309970:intron | 35.0% | |
| GAACTATTCCTGTAGTTTCT+TGG | + | chr2_4:4802699-4802718 | Msa0309970:intron | 35.0% | |
| AGCATATTAATGCTCTTTCC+AGG | + | chr2_4:4802925-4802944 | Msa0309970:CDS | 35.0% | |
| CAAGGTATACCAAAGGAAAA+TGG | - | chr2_4:4803012-4803031 | None:intergenic | 35.0% | |
| AGCTTCTCAATAGTGACATT+TGG | - | chr2_4:4803245-4803264 | None:intergenic | 35.0% | |
| ACATCTGATGCTATGCAATA+CGG | - | chr2_4:4803332-4803351 | None:intergenic | 35.0% | |
| TATTGCATAGCATCAGATGT+AGG | + | chr2_4:4803332-4803351 | Msa0309970:CDS | 35.0% | |
| ATTACTTATGCAGAGCACAT+AGG | - | chr2_4:4803370-4803389 | None:intergenic | 35.0% | |
| TACAACGGTAGTTGTTTGTT+TGG | + | chr2_4:4803416-4803435 | Msa0309970:three_prime_UTR | 35.0% | |
| ! | TCTTTGCTATCGTACTTACT+CGG | + | chr2_4:4803513-4803532 | Msa0309970:three_prime_UTR | 35.0% |
| CTCTATCATCTTCCACTTAG+TGG | + | chr2_4:4799125-4799144 | Msa0309970:intron | 40.0% | |
| AATGGAAATGCACCACTAAG+TGG | - | chr2_4:4799140-4799159 | None:intergenic | 40.0% | |
| GAGGAACAGCTGACAAAAAT+TGG | - | chr2_4:4799448-4799467 | None:intergenic | 40.0% | |
| !!! | AGTGCTGATGTTTTGGTCAA+TGG | + | chr2_4:4799493-4799512 | Msa0309970:CDS | 40.0% |
| GTCAATGGTTTGAGCACTAA+TGG | + | chr2_4:4799508-4799527 | Msa0309970:CDS | 40.0% | |
| GCTGACACATCAAAATCATC+AGG | - | chr2_4:4799550-4799569 | None:intergenic | 40.0% | |
| !! | GTTGTATCTGGGGGTATTAT+AGG | + | chr2_4:4799874-4799893 | Msa0309970:intron | 40.0% |
| GGTATTATAGGTGCTAGTTC+TGG | + | chr2_4:4799886-4799905 | Msa0309970:intron | 40.0% | |
| !!! | GTGCGGGGGATTTTTTTTTA+GGG | - | chr2_4:4799996-4800015 | None:intergenic | 40.0% |
| !!! | TGTGCGGGGGATTTTTTTTT+AGG | - | chr2_4:4799997-4800016 | None:intergenic | 40.0% |
| GCACAATCCTATATTGCCTA+CGG | - | chr2_4:4800064-4800083 | None:intergenic | 40.0% | |
| CAAATGCAACACCCTGAAAA+AGG | + | chr2_4:4800108-4800127 | Msa0309970:intron | 40.0% | |
| !! | GTGGTTTGGTTCACTTGATT+TGG | + | chr2_4:4800184-4800203 | Msa0309970:intron | 40.0% |
| ! | AAATGGACCCAAACCCATTT+TGG | + | chr2_4:4800326-4800345 | Msa0309970:intron | 40.0% |
| ATGGAATACCCCACCAAAAT+GGG | - | chr2_4:4800342-4800361 | None:intergenic | 40.0% | |
| AATGGAATACCCCACCAAAA+TGG | - | chr2_4:4800343-4800362 | None:intergenic | 40.0% | |
| GTAAGCTCAATTGTGTCTGT+AGG | + | chr2_4:4800420-4800439 | Msa0309970:intron | 40.0% | |
| GATGTAGGAACTAGAAAGAC+AGG | + | chr2_4:4800557-4800576 | Msa0309970:intron | 40.0% | |
| !! | TGGTTGGAAATTGGTCTTAG+GGG | + | chr2_4:4800598-4800617 | Msa0309970:intron | 40.0% |
| ! | ACCAGGTTAGTCATTGATCT+AGG | + | chr2_4:4800628-4800647 | Msa0309970:intron | 40.0% |
| ! | CCAGGTTAGTCATTGATCTA+GGG | + | chr2_4:4800629-4800648 | Msa0309970:intron | 40.0% |
| !!! | TGATTTTCTTGGTGTCGACA+TGG | - | chr2_4:4800836-4800855 | None:intergenic | 40.0% |
| AGCAAAGTCTGGATGGAAAA+AGG | - | chr2_4:4800866-4800885 | None:intergenic | 40.0% | |
| GAATGAATTTGCAACTGCGT+TGG | + | chr2_4:4800916-4800935 | Msa0309970:intron | 40.0% | |
| ! | AGGTGTCTTTTCGTGAATCA+AGG | - | chr2_4:4800968-4800987 | None:intergenic | 40.0% |
| TCACGAAAAGACACCTTTGA+AGG | + | chr2_4:4800972-4800991 | Msa0309970:intron | 40.0% | |
| TGGATCTCCAAGGTTGTTTA+TGG | - | chr2_4:4801506-4801525 | None:intergenic | 40.0% | |
| !! | TTGAAGTTGGCGTTTTGGAT+TGG | + | chr2_4:4801563-4801582 | Msa0309970:CDS | 40.0% |
| ! | CTGGAGAAAAATGAGTACTG+GGG | + | chr2_4:4801604-4801623 | Msa0309970:CDS | 40.0% |
| TGGGGCTATATAACAAACTG+CGG | + | chr2_4:4801622-4801641 | Msa0309970:CDS | 40.0% | |
| ! | AAATGACTTTTGCAGGAGAG+AGG | + | chr2_4:4801745-4801764 | Msa0309970:intron | 40.0% |
| TTTGCAGGTACAACTGTGAA+AGG | + | chr2_4:4802038-4802057 | Msa0309970:intron | 40.0% | |
| ! | AAGCTGGATTTTCAAAGGAC+AGG | + | chr2_4:4802102-4802121 | Msa0309970:CDS | 40.0% |
| GCACTTACTCGTTTCACAAA+AGG | - | chr2_4:4802170-4802189 | None:intergenic | 40.0% | |
| ATACCCTTTCCATCTTACAG+TGG | + | chr2_4:4802350-4802369 | Msa0309970:intron | 40.0% | |
| AAGCCACTGTAAGATGGAAA+GGG | - | chr2_4:4802356-4802375 | None:intergenic | 40.0% | |
| CTCTGTCGATGCATATGAAA+TGG | - | chr2_4:4802752-4802771 | None:intergenic | 40.0% | |
| GAAACACTTACACTGCCAAT+AGG | - | chr2_4:4802849-4802868 | None:intergenic | 40.0% | |
| ATTGGCAGTGTAAGTGTTTC+TGG | + | chr2_4:4802849-4802868 | Msa0309970:CDS | 40.0% | |
| !! | TGTTTCTGGCCACAAATTTG+TGG | + | chr2_4:4802863-4802882 | Msa0309970:CDS | 40.0% |
| !! | GTTTCTGGCCACAAATTTGT+GGG | + | chr2_4:4802864-4802883 | Msa0309970:CDS | 40.0% |
| ! | TTTCTGGCCACAAATTTGTG+GGG | + | chr2_4:4802865-4802884 | Msa0309970:CDS | 40.0% |
| TGGTGTGCAGATAACAAGAT+TGG | + | chr2_4:4802902-4802921 | Msa0309970:CDS | 40.0% | |
| TAATGCTCTTTCCAGGAATG+TGG | + | chr2_4:4802932-4802951 | Msa0309970:CDS | 40.0% | |
| TCTAGGGATGCTACAATCAT+GGG | + | chr2_4:4802966-4802985 | Msa0309970:CDS | 40.0% | |
| TCCTTTGGTATACCTTGAAC+CGG | + | chr2_4:4803015-4803034 | Msa0309970:CDS | 40.0% | |
| ATACAGAGGCTTTCAGAAAG+AGG | + | chr2_4:4803043-4803062 | Msa0309970:CDS | 40.0% | |
| ! | AAGAGGTACAGAAATGCTTG+CGG | + | chr2_4:4803060-4803079 | Msa0309970:CDS | 40.0% |
| AAATGTGCCATCTTCAAACC+AGG | - | chr2_4:4803306-4803325 | None:intergenic | 40.0% | |
| CAACTACCGTTGTAAACTCT+AGG | - | chr2_4:4803410-4803429 | None:intergenic | 40.0% | |
| !!! | GGTTGGAAGTGCTGATGTTT+TGG | + | chr2_4:4799486-4799505 | Msa0309970:CDS | 45.0% |
| !! | AGGCACTGGATCTTTGATGA+TGG | - | chr2_4:4799572-4799591 | None:intergenic | 45.0% |
| ATGCCATTGTCTGCAACTAC+AGG | - | chr2_4:4799595-4799614 | None:intergenic | 45.0% | |
| !! | TGCAGACAATGGCATTGACA+AGG | + | chr2_4:4799600-4799619 | Msa0309970:CDS | 45.0% |
| !! | AGACAATGGCATTGACAAGG+AGG | + | chr2_4:4799603-4799622 | Msa0309970:CDS | 45.0% |
| ! | TCGTTTGGTCTCTTTTGTGC+GGG | - | chr2_4:4800012-4800031 | None:intergenic | 45.0% |
| ! | CTCGTTTGGTCTCTTTTGTG+CGG | - | chr2_4:4800013-4800032 | None:intergenic | 45.0% |
| GGTTTGTGACAACTGACAAG+CGG | + | chr2_4:4800129-4800148 | Msa0309970:intron | 45.0% | |
| !! | AACTGACAAGCGGTTTGGTT+TGG | + | chr2_4:4800139-4800158 | Msa0309970:intron | 45.0% |
| AAGCTTCTTCAGGGTGTACA+TGG | - | chr2_4:4800214-4800233 | None:intergenic | 45.0% | |
| ! | TACCCCACCAAAATGGGTTT+GGG | - | chr2_4:4800336-4800355 | None:intergenic | 45.0% |
| ! | ATACCCCACCAAAATGGGTT+TGG | - | chr2_4:4800337-4800356 | None:intergenic | 45.0% |
| !! | GGTTGGAAATTGGTCTTAGG+GGG | + | chr2_4:4800599-4800618 | Msa0309970:intron | 45.0% |
| CCCTAGATCAATGACTAACC+TGG | - | chr2_4:4800632-4800651 | None:intergenic | 45.0% | |
| ACACTAGAGCAAAGTCTGGA+TGG | - | chr2_4:4800873-4800892 | None:intergenic | 45.0% | |
| CTCACATGCACAACCTTCAA+AGG | - | chr2_4:4800988-4801007 | None:intergenic | 45.0% | |
| AAACGCCAACTTCAAACTGC+CGG | - | chr2_4:4801558-4801577 | None:intergenic | 45.0% | |
| !! | GCAGTTTGAAGTTGGCGTTT+TGG | + | chr2_4:4801558-4801577 | Msa0309970:CDS | 45.0% |
| !! | TGGATTGGTTTGCCAGATTG+TGG | + | chr2_4:4801578-4801597 | Msa0309970:CDS | 45.0% |
| !! | GGATTGGTTTGCCAGATTGT+GGG | + | chr2_4:4801579-4801598 | Msa0309970:CDS | 45.0% |
| TTTCTCCAGTTCCCACAATC+TGG | - | chr2_4:4801593-4801612 | None:intergenic | 45.0% | |
| ATAACAAACTGCGGCACAGA+AGG | + | chr2_4:4801631-4801650 | Msa0309970:CDS | 45.0% | |
| AATCTCCACGGCATCTTAGT+TGG | + | chr2_4:4801655-4801674 | Msa0309970:CDS | 45.0% | |
| ATCTCCACGGCATCTTAGTT+GGG | + | chr2_4:4801656-4801675 | Msa0309970:CDS | 45.0% | |
| GAGGCATACAAAATCCCATC+TGG | - | chr2_4:4801776-4801795 | None:intergenic | 45.0% | |
| !!! | TAATTGCCGGTTTTTCCTGG+TGG | - | chr2_4:4801919-4801938 | None:intergenic | 45.0% |
| GCATGGGACTATTGAAGAGA+CGG | - | chr2_4:4801972-4801991 | None:intergenic | 45.0% | |
| !! | ATGAAGATGATGGGAGGCAT+GGG | - | chr2_4:4801988-4802007 | None:intergenic | 45.0% |
| !! | AATGAAGATGATGGGAGGCA+TGG | - | chr2_4:4801989-4802008 | None:intergenic | 45.0% |
| TACAACTGTGAAAGGAGCTG+TGG | + | chr2_4:4802046-4802065 | Msa0309970:CDS | 45.0% | |
| AGCTGTGGATGATCTTGATC+TGG | + | chr2_4:4802061-4802080 | Msa0309970:CDS | 45.0% | |
| AGGTTCTACATCCACGTTGA+TGG | + | chr2_4:4802122-4802141 | Msa0309970:CDS | 45.0% | |
| GGTTCTACATCCACGTTGAT+GGG | + | chr2_4:4802123-4802142 | Msa0309970:CDS | 45.0% | |
| GTTCTACATCCACGTTGATG+GGG | + | chr2_4:4802124-4802143 | Msa0309970:CDS | 45.0% | |
| TCAGAACATATGGAGATGGC+AGG | - | chr2_4:4802248-4802267 | None:intergenic | 45.0% | |
| ! | TAAGATGGAAAGGGTATGCG+TGG | - | chr2_4:4802347-4802366 | None:intergenic | 45.0% |
| CAAGCCACTGTAAGATGGAA+AGG | - | chr2_4:4802357-4802376 | None:intergenic | 45.0% | |
| CAGAACAAGCCACTGTAAGA+TGG | - | chr2_4:4802362-4802381 | None:intergenic | 45.0% | |
| ! | CTTGTTATCTGCACACCACA+AGG | - | chr2_4:4802900-4802919 | None:intergenic | 45.0% |
| ATGTGGAATACCTTGCGTCT+AGG | + | chr2_4:4802949-4802968 | Msa0309970:CDS | 45.0% | |
| TGTGGAATACCTTGCGTCTA+GGG | + | chr2_4:4802950-4802969 | Msa0309970:CDS | 45.0% | |
| GTCTAGGGATGCTACAATCA+TGG | + | chr2_4:4802965-4802984 | Msa0309970:CDS | 45.0% | |
| ACAATCATGGGCAGTCGAAA+TGG | + | chr2_4:4802978-4802997 | Msa0309970:CDS | 45.0% | |
| ACCAAAGGAAAATGGGAGCA+TGG | - | chr2_4:4803004-4803023 | None:intergenic | 45.0% | |
| TCCGGTTCAAGGTATACCAA+AGG | - | chr2_4:4803019-4803038 | None:intergenic | 45.0% | |
| TGGTATACCTTGAACCGGAA+AGG | + | chr2_4:4803020-4803039 | Msa0309970:CDS | 45.0% | |
| TCTGTATCCTTTCCGGTTCA+AGG | - | chr2_4:4803030-4803049 | None:intergenic | 45.0% | |
| TTGAACCGGAAAGGATACAG+AGG | + | chr2_4:4803029-4803048 | Msa0309970:CDS | 45.0% | |
| GAAAGCCTCTGTATCCTTTC+CGG | - | chr2_4:4803037-4803056 | None:intergenic | 45.0% | |
| ! | CTTCAAAGACCGCCTTATTG+AGG | + | chr2_4:4803094-4803113 | Msa0309970:CDS | 45.0% |
| !! | AAAATTAAAAAAAAAAAAAC+AGG | - | chr2_4:4800262-4800281 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATTTTTATTTGT+TGG | + | chr2_4:4800269-4800288 | Msa0309970:intron | 5.0% |
| TGTCAGCTGTTCCTCTGTTG+TGG | + | chr2_4:4799453-4799472 | Msa0309970:intron | 50.0% | |
| CCATTGTCTGCAACTACAGG+AGG | - | chr2_4:4799592-4799611 | None:intergenic | 50.0% | |
| CCTCCTGTAGTTGCAGACAA+TGG | + | chr2_4:4799589-4799608 | Msa0309970:CDS | 50.0% | |
| !! | CAATGGCATTGACAAGGAGG+AGG | + | chr2_4:4799606-4799625 | Msa0309970:CDS | 50.0% |
| AAGGAGGAGGCAAAGACCAA+TGG | + | chr2_4:4799619-4799638 | Msa0309970:CDS | 50.0% | |
| CACCACGTGTCTAGAAGTCA+CGG | + | chr2_4:4799684-4799703 | Msa0309970:CDS | 50.0% | |
| CATATGAGCATCACGATCGC+CGG | - | chr2_4:4799734-4799753 | None:intergenic | 50.0% | |
| TGCTCATATGGCAAGTGTGC+TGG | + | chr2_4:4799744-4799763 | Msa0309970:CDS | 50.0% | |
| ! | GTTTGGTCTCTTTTGTGCGG+GGG | - | chr2_4:4800010-4800029 | None:intergenic | 50.0% |
| ! | CGTTTGGTCTCTTTTGTGCG+GGG | - | chr2_4:4800011-4800030 | None:intergenic | 50.0% |
| ACTGTGATGCGTTGCTCGTT+TGG | - | chr2_4:4800027-4800046 | None:intergenic | 50.0% | |
| CGCAACACCGTAGGCAATAT+AGG | + | chr2_4:4800054-4800073 | Msa0309970:intron | 50.0% | |
| !! | CAGGGTGTTGCATTTGCTGT+TGG | - | chr2_4:4800104-4800123 | None:intergenic | 50.0% |
| GTGACAACTGACAAGCGGTT+TGG | + | chr2_4:4800134-4800153 | Msa0309970:intron | 50.0% | |
| ! | TGGACCCAAACCCATTTTGG+TGG | + | chr2_4:4800329-4800348 | Msa0309970:intron | 50.0% |
| !! | GGACCCAAACCCATTTTGGT+GGG | + | chr2_4:4800330-4800349 | Msa0309970:intron | 50.0% |
| !! | GACCCAAACCCATTTTGGTG+GGG | + | chr2_4:4800331-4800350 | Msa0309970:intron | 50.0% |
| TGCAGGCTACCCCTACAATT+TGG | + | chr2_4:4801441-4801460 | Msa0309970:intron | 50.0% | |
| GCAATTATGGTGTCCACTCC+CGG | + | chr2_4:4801536-4801555 | Msa0309970:CDS | 50.0% | |
| AACGCCAACTTCAAACTGCC+GGG | - | chr2_4:4801557-4801576 | None:intergenic | 50.0% | |
| GTTTGCCAGATTGTGGGAAC+TGG | + | chr2_4:4801585-4801604 | Msa0309970:CDS | 50.0% | |
| CTAACCCAACTAAGATGCCG+TGG | - | chr2_4:4801663-4801682 | None:intergenic | 50.0% | |
| !! | AGGAGAGAGGTGTTACCAGA+TGG | + | chr2_4:4801758-4801777 | Msa0309970:intron | 50.0% |
| !! | GGAGAGAGGTGTTACCAGAT+GGG | + | chr2_4:4801759-4801778 | Msa0309970:intron | 50.0% |
| AGCTGCCCGTATGTACAGAA+TGG | + | chr2_4:4801823-4801842 | Msa0309970:CDS | 50.0% | |
| ! | TTCCTGGTGGCGAAGAAGTT+TGG | - | chr2_4:4801906-4801925 | None:intergenic | 50.0% |
| TCTTCGCCACCAGGAAAAAC+CGG | + | chr2_4:4801910-4801929 | Msa0309970:CDS | 50.0% | |
| CAAACAAAGCCCCATCAACG+TGG | - | chr2_4:4802136-4802155 | None:intergenic | 50.0% | |
| !! | CACGTTGATGGGGCTTTGTT+TGG | + | chr2_4:4802134-4802153 | Msa0309970:CDS | 50.0% |
| GAACATATGGAGATGGCAGG+TGG | - | chr2_4:4802245-4802264 | None:intergenic | 50.0% | |
| GGCACGATCCAAGAAACTAC+AGG | - | chr2_4:4802710-4802729 | None:intergenic | 50.0% | |
| ! | TAGGGCACCCCACAAATTTG+TGG | - | chr2_4:4802875-4802894 | None:intergenic | 50.0% |
| TCTGCACACCACAAGGCATA+GGG | - | chr2_4:4802893-4802912 | None:intergenic | 50.0% | |
| ATCTGCACACCACAAGGCAT+AGG | - | chr2_4:4802894-4802913 | None:intergenic | 50.0% | |
| ! | CGCAAGGTATTCCACATTCC+TGG | - | chr2_4:4802946-4802965 | None:intergenic | 50.0% |
| TTGTAGCATCCCTAGACGCA+AGG | - | chr2_4:4802962-4802981 | None:intergenic | 50.0% | |
| ! | GCCATGCTCCCATTTTCCTT+TGG | + | chr2_4:4803000-4803019 | Msa0309970:CDS | 50.0% |
| ! | AAAGACCGCCTTATTGAGGC+TGG | + | chr2_4:4803098-4803117 | Msa0309970:CDS | 50.0% |
| ! | AAGACCGCCTTATTGAGGCT+GGG | + | chr2_4:4803099-4803118 | Msa0309970:CDS | 50.0% |
| CAATCCCAGCCTCAATAAGG+CGG | - | chr2_4:4803106-4803125 | None:intergenic | 50.0% | |
| CACCAATCCCAGCCTCAATA+AGG | - | chr2_4:4803109-4803128 | None:intergenic | 50.0% | |
| GCTTAATGAGCTCAGCAGCA+CGG | + | chr2_4:4803133-4803152 | Msa0309970:CDS | 50.0% | |
| GCAGCACGGTTGTATTTGAG+CGG | + | chr2_4:4803147-4803166 | Msa0309970:CDS | 50.0% | |
| AAGTGGCAGCTAGCATGCAA+GGG | + | chr2_4:4803194-4803213 | Msa0309970:CDS | 50.0% | |
| GTACTTACTCGGCCTGCTAT+TGG | + | chr2_4:4803524-4803543 | Msa0309970:three_prime_UTR | 50.0% | |
| ! | TCTGCAACTACAGGAGGCAC+TGG | - | chr2_4:4799586-4799605 | None:intergenic | 55.0% |
| GAGGAGGCAAAGACCAATGG+AGG | + | chr2_4:4799622-4799641 | Msa0309970:CDS | 55.0% | |
| CTCCGTGACTTCTAGACACG+TGG | - | chr2_4:4799689-4799708 | None:intergenic | 55.0% | |
| CGGCGATCGTGATGCTCATA+TGG | + | chr2_4:4799732-4799751 | Msa0309970:CDS | 55.0% | |
| GTAGACAGTCGCAACACCGT+AGG | + | chr2_4:4800045-4800064 | Msa0309970:intron | 55.0% | |
| GTCTTAGGGGGAGTGATACC+AGG | + | chr2_4:4800611-4800630 | Msa0309970:intron | 55.0% | |
| CAACTTCAAACTGCCGGGAG+TGG | - | chr2_4:4801552-4801571 | None:intergenic | 55.0% | |
| ! | CACTCCCGGCAGTTTGAAGT+TGG | + | chr2_4:4801550-4801569 | Msa0309970:CDS | 55.0% |
| GGCACAGAAGGCAATCTCCA+CGG | + | chr2_4:4801643-4801662 | Msa0309970:CDS | 55.0% | |
| CATATGGAGATGGCAGGTGG+AGG | - | chr2_4:4802242-4802261 | None:intergenic | 55.0% | |
| ! | CGCCTTATTGAGGCTGGGAT+TGG | + | chr2_4:4803104-4803123 | Msa0309970:CDS | 55.0% |
| CAAGTGGCAGCTAGCATGCA+AGG | + | chr2_4:4803193-4803212 | Msa0309970:CDS | 55.0% | |
| AGTGGCAGCTAGCATGCAAG+GGG | + | chr2_4:4803195-4803214 | Msa0309970:CDS | 55.0% | |
| CAAGGGGAACATCGCTCATG+TGG | + | chr2_4:4803211-4803230 | Msa0309970:CDS | 55.0% | |
| ! | CGTGCTGCCTGGTTTGAAGA+TGG | + | chr2_4:4803296-4803315 | Msa0309970:CDS | 55.0% |
| GGCCAAACTTCTTCGCCACC+AGG | + | chr2_4:4801901-4801920 | Msa0309970:CDS | 60.0% | |
| GGGGAACATCGCTCATGTGG+TGG | + | chr2_4:4803214-4803233 | Msa0309970:CDS | 60.0% | |
| ! | TTGTGCAGAAGCGTGCTGCC+TGG | + | chr2_4:4803285-4803304 | Msa0309970:CDS | 60.0% |
| ! | GTGGGGTGCCCTATGCCTTG+TGG | + | chr2_4:4802882-4802901 | Msa0309970:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4799063 | 4803547 | 4799063 | ID=Msa0309970;Name=Msa0309970 |
| chr2_4 | mRNA | 4799063 | 4803547 | 4799063 | ID=Msa0309970-mRNA-1;Parent=Msa0309970;Name=Msa0309970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=70|1|1|1|0.8|0.66|6|159|485 |
| chr2_4 | exon | 4799063 | 4799107 | 4799063 | ID=Msa0309970-mRNA-1:exon:1631;Parent=Msa0309970-mRNA-1 |
| chr2_4 | exon | 4799459 | 4799811 | 4799459 | ID=Msa0309970-mRNA-1:exon:1632;Parent=Msa0309970-mRNA-1 |
| chr2_4 | exon | 4801446 | 4801677 | 4801446 | ID=Msa0309970-mRNA-1:exon:1633;Parent=Msa0309970-mRNA-1 |
| chr2_4 | exon | 4801760 | 4801953 | 4801760 | ID=Msa0309970-mRNA-1:exon:1634;Parent=Msa0309970-mRNA-1 |
| chr2_4 | exon | 4802045 | 4802181 | 4802045 | ID=Msa0309970-mRNA-1:exon:1635;Parent=Msa0309970-mRNA-1 |
| chr2_4 | exon | 4802822 | 4803547 | 4802822 | ID=Msa0309970-mRNA-1:exon:1636;Parent=Msa0309970-mRNA-1 |
| chr2_4 | five_prime_UTR | 4799063 | 4799107 | 4799063 | ID=Msa0309970-mRNA-1:five_prime_utr;Parent=Msa0309970-mRNA-1 |
| chr2_4 | five_prime_UTR | 4799459 | 4799483 | 4799459 | ID=Msa0309970-mRNA-1:five_prime_utr;Parent=Msa0309970-mRNA-1 |
| chr2_4 | CDS | 4799484 | 4799811 | 4799484 | ID=Msa0309970-mRNA-1:cds;Parent=Msa0309970-mRNA-1 |
| chr2_4 | CDS | 4801446 | 4801677 | 4801446 | ID=Msa0309970-mRNA-1:cds;Parent=Msa0309970-mRNA-1 |
| chr2_4 | CDS | 4801760 | 4801953 | 4801760 | ID=Msa0309970-mRNA-1:cds;Parent=Msa0309970-mRNA-1 |
| chr2_4 | CDS | 4802045 | 4802181 | 4802045 | ID=Msa0309970-mRNA-1:cds;Parent=Msa0309970-mRNA-1 |
| chr2_4 | CDS | 4802822 | 4803388 | 4802822 | ID=Msa0309970-mRNA-1:cds;Parent=Msa0309970-mRNA-1 |
| chr2_4 | three_prime_UTR | 4803389 | 4803547 | 4803389 | ID=Msa0309970-mRNA-1:three_prime_utr;Parent=Msa0309970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
