Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189740 | RHN71613.1 | 80.761 | 473 | 32 | 4 | 1 | 415 | 84 | 555 | 0.0 | 748 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189740 | sp|D4Q9Z5|SGT3_SOYBN | 64.059 | 473 | 109 | 5 | 1 | 413 | 1 | 472 | 0.0 | 599 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189740 | A0A396J4Q7 | 80.761 | 473 | 32 | 4 | 1 | 415 | 84 | 555 | 0.0 | 748 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0189640 | Msa0189740 | 0.978505 | 5.765155e-146 | -8.615850e-47 |
Msa0189740 | Msa0232040 | 0.802644 | 5.086282e-49 | -8.615850e-47 |
Msa0189740 | Msa0232110 | 0.984907 | 6.053449e-162 | -8.615850e-47 |
Msa0189740 | Msa0310120 | 0.992907 | 3.375477e-196 | -8.615850e-47 |
Msa0189740 | Msa0346830 | 0.833949 | 3.973705e-56 | -8.615850e-47 |
Msa0189740 | Msa0440280 | 0.840934 | 6.445358e-58 | -8.615850e-47 |
Msa0189740 | Msa0881320 | 0.983465 | 8.140011e-158 | -8.615850e-47 |
Msa0189740 | Msa1452400 | 0.995029 | 2.314304e-212 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189740 | MtrunA17_Chr2g0278741 | 80.761 | 473 | 32 | 4 | 1 | 415 | 84 | 555 | 0.0 | 748 |
Msa0189740 | MtrunA17_Chr2g0278721 | 75.427 | 468 | 55 | 5 | 1 | 409 | 1 | 467 | 0.0 | 691 |
Msa0189740 | MtrunA17_Chr2g0278721 | 48.203 | 473 | 169 | 10 | 3 | 404 | 506 | 973 | 4.42e-144 | 434 |
Msa0189740 | MtrunA17_Chr6g0464091 | 63.732 | 477 | 108 | 4 | 1 | 413 | 1 | 476 | 0.0 | 590 |
Msa0189740 | MtrunA17_Chr2g0302851 | 61.702 | 470 | 120 | 9 | 1 | 413 | 1 | 467 | 0.0 | 567 |
Msa0189740 | MtrunA17_Chr4g0039881 | 63.348 | 442 | 104 | 7 | 23 | 409 | 1 | 439 | 0.0 | 537 |
Msa0189740 | MtrunA17_Chr4g0069611 | 57.996 | 469 | 138 | 9 | 1 | 413 | 1 | 466 | 0.0 | 535 |
Msa0189740 | MtrunA17_Chr6g0466841 | 58.562 | 473 | 132 | 8 | 1 | 413 | 1 | 469 | 0.0 | 533 |
Msa0189740 | MtrunA17_Chr6g0466831 | 58.351 | 473 | 133 | 8 | 1 | 413 | 1 | 469 | 0.0 | 532 |
Msa0189740 | MtrunA17_Chr6g0477011 | 59.272 | 302 | 85 | 8 | 1 | 266 | 1 | 300 | 2.23e-111 | 329 |
Msa0189740 | MtrunA17_Chr7g0241801 | 38.228 | 429 | 229 | 6 | 7 | 404 | 2 | 425 | 2.49e-95 | 292 |
Msa0189740 | MtrunA17_Chr3g0092031 | 79.518 | 166 | 33 | 1 | 247 | 412 | 38 | 202 | 9.93e-93 | 278 |
Msa0189740 | MtrunA17_Chr7g0241781 | 37.355 | 431 | 226 | 7 | 7 | 402 | 2 | 423 | 1.19e-88 | 275 |
Msa0189740 | MtrunA17_Chr8g0367221 | 35.076 | 459 | 236 | 5 | 8 | 404 | 1282 | 1740 | 2.09e-87 | 290 |
Msa0189740 | MtrunA17_Chr8g0367221 | 36.774 | 465 | 227 | 9 | 7 | 407 | 5 | 466 | 4.91e-87 | 289 |
Msa0189740 | MtrunA17_Chr8g0367221 | 36.404 | 456 | 222 | 7 | 7 | 397 | 791 | 1243 | 4.83e-84 | 280 |
Msa0189740 | MtrunA17_Chr8g0336321 | 30.670 | 463 | 252 | 10 | 9 | 404 | 2 | 462 | 6.72e-62 | 207 |
Msa0189740 | MtrunA17_Chr8g0336251 | 30.670 | 463 | 252 | 10 | 9 | 404 | 2 | 462 | 7.54e-62 | 207 |
Msa0189740 | MtrunA17_Chr3g0092021 | 56.284 | 183 | 52 | 4 | 1 | 156 | 1 | 182 | 4.45e-59 | 191 |
Msa0189740 | MtrunA17_Chr4g0040711 | 30.835 | 467 | 239 | 16 | 8 | 404 | 2 | 454 | 5.16e-53 | 183 |
Msa0189740 | MtrunA17_Chr4g0040691 | 29.979 | 467 | 241 | 15 | 9 | 404 | 3 | 454 | 9.38e-52 | 180 |
Msa0189740 | MtrunA17_Chr2g0283041 | 29.004 | 462 | 243 | 14 | 13 | 404 | 6 | 452 | 5.79e-50 | 175 |
Msa0189740 | MtrunA17_Chr1g0196851 | 27.468 | 466 | 268 | 11 | 2 | 404 | 37 | 495 | 3.92e-47 | 168 |
Msa0189740 | MtrunA17_Chr2g0319801 | 28.390 | 472 | 244 | 15 | 8 | 404 | 2 | 454 | 2.34e-44 | 160 |
Msa0189740 | MtrunA17_Chr2g0319731 | 28.270 | 474 | 256 | 15 | 3 | 406 | 14 | 473 | 9.33e-43 | 156 |
Msa0189740 | MtrunA17_Chr2g0319761 | 28.918 | 453 | 256 | 13 | 13 | 404 | 7 | 454 | 2.79e-42 | 154 |
Msa0189740 | MtrunA17_Chr4g0029151 | 28.509 | 456 | 257 | 15 | 10 | 404 | 16 | 463 | 3.32e-42 | 154 |
Msa0189740 | MtrunA17_Chr2g0319751 | 28.160 | 451 | 250 | 16 | 8 | 405 | 2 | 431 | 1.54e-40 | 154 |
Msa0189740 | MtrunA17_Chr2g0319751 | 26.124 | 467 | 271 | 13 | 4 | 405 | 475 | 932 | 3.65e-38 | 147 |
Msa0189740 | MtrunA17_Chr2g0319791 | 28.879 | 464 | 254 | 17 | 8 | 405 | 2 | 455 | 4.86e-40 | 148 |
Msa0189740 | MtrunA17_Chr4g0029131 | 28.139 | 462 | 251 | 14 | 10 | 404 | 8 | 455 | 5.05e-39 | 148 |
Msa0189740 | MtrunA17_Chr4g0029131 | 33.607 | 122 | 71 | 4 | 10 | 129 | 466 | 579 | 1.23e-11 | 66.6 |
Msa0189740 | MtrunA17_Chr5g0427571 | 33.094 | 278 | 134 | 9 | 171 | 404 | 27 | 296 | 1.83e-29 | 116 |
Msa0189740 | MtrunA17_Chr4g0029161 | 26.623 | 462 | 230 | 17 | 10 | 404 | 8 | 427 | 1.23e-28 | 116 |
Msa0189740 | MtrunA17_Chr2g0321331 | 28.676 | 272 | 167 | 8 | 141 | 404 | 11 | 263 | 7.10e-22 | 94.7 |
Msa0189740 | MtrunA17_Chr5g0427581 | 38.261 | 115 | 69 | 1 | 17 | 129 | 1 | 115 | 2.09e-21 | 90.1 |
Msa0189740 | MtrunA17_Chr6g0459311 | 24.945 | 457 | 241 | 15 | 11 | 384 | 10 | 447 | 1.81e-20 | 93.2 |
Msa0189740 | MtrunA17_Chr8g0336651 | 41.322 | 121 | 71 | 0 | 269 | 389 | 325 | 445 | 3.24e-20 | 93.6 |
Msa0189740 | MtrunA17_Chr8g0336651 | 39.831 | 118 | 71 | 0 | 272 | 389 | 1107 | 1224 | 1.58e-18 | 88.2 |
Msa0189740 | MtrunA17_Chr8g0336651 | 39.474 | 114 | 67 | 2 | 277 | 389 | 643 | 755 | 1.28e-14 | 76.3 |
Msa0189740 | MtrunA17_Chr6g0486251 | 25.714 | 455 | 232 | 15 | 15 | 384 | 7 | 440 | 1.15e-19 | 90.9 |
Msa0189740 | MtrunA17_Chr6g0486201 | 25.714 | 455 | 232 | 15 | 15 | 384 | 7 | 440 | 1.15e-19 | 90.9 |
Msa0189740 | MtrunA17_Chr1g0153461 | 40.000 | 115 | 69 | 0 | 269 | 383 | 73 | 187 | 3.37e-19 | 85.9 |
Msa0189740 | MtrunA17_Chr5g0440421 | 25.275 | 455 | 247 | 18 | 7 | 373 | 3 | 452 | 7.83e-19 | 88.6 |
Msa0189740 | MtrunA17_Chr7g0232411 | 37.931 | 116 | 70 | 2 | 269 | 383 | 326 | 440 | 8.25e-19 | 88.2 |
Msa0189740 | MtrunA17_Chr8g0336691 | 39.669 | 121 | 73 | 0 | 269 | 389 | 334 | 454 | 1.14e-18 | 89.0 |
Msa0189740 | MtrunA17_Chr8g0336691 | 25.176 | 425 | 264 | 13 | 11 | 389 | 477 | 893 | 2.97e-18 | 87.4 |
Msa0189740 | MtrunA17_Chr8g0336691 | 39.130 | 115 | 70 | 0 | 269 | 383 | 1240 | 1354 | 1.34e-17 | 85.5 |
Msa0189740 | MtrunA17_Chr8g0335161 | 24.622 | 463 | 239 | 17 | 10 | 384 | 2 | 442 | 1.77e-18 | 87.4 |
Msa0189740 | MtrunA17_Chr7g0232401 | 37.391 | 115 | 72 | 0 | 269 | 383 | 328 | 442 | 3.78e-18 | 86.3 |
Msa0189740 | MtrunA17_Chr8g0335141 | 25.056 | 443 | 261 | 14 | 10 | 384 | 5 | 444 | 4.29e-18 | 86.3 |
Msa0189740 | MtrunA17_Chr1g0207931 | 25.652 | 460 | 243 | 21 | 4 | 406 | 82 | 499 | 7.50e-18 | 85.5 |
Msa0189740 | MtrunA17_Chr1g0153451 | 38.261 | 115 | 71 | 0 | 269 | 383 | 324 | 438 | 8.79e-18 | 85.1 |
Msa0189740 | MtrunA17_Chr7g0275511 | 39.167 | 120 | 73 | 0 | 269 | 388 | 336 | 455 | 1.73e-17 | 84.3 |
Msa0189740 | MtrunA17_Chr4g0044481 | 26.768 | 396 | 204 | 15 | 14 | 347 | 27 | 398 | 4.03e-17 | 82.8 |
Msa0189740 | MtrunA17_Chr8g0336731 | 37.391 | 115 | 72 | 0 | 269 | 383 | 351 | 465 | 4.70e-17 | 83.2 |
Msa0189740 | MtrunA17_Chr5g0414321 | 34.839 | 155 | 92 | 5 | 255 | 404 | 301 | 451 | 8.62e-17 | 82.0 |
Msa0189740 | MtrunA17_Chr8g0369341 | 23.279 | 494 | 272 | 13 | 9 | 413 | 2 | 477 | 1.08e-16 | 82.0 |
Msa0189740 | MtrunA17_Chr4g0072771 | 24.036 | 441 | 245 | 17 | 11 | 383 | 22 | 440 | 1.92e-16 | 80.9 |
Msa0189740 | MtrunA17_Chr8g0347281 | 37.391 | 115 | 72 | 0 | 269 | 383 | 333 | 447 | 2.28e-16 | 80.9 |
Msa0189740 | MtrunA17_Chr7g0232391 | 36.207 | 116 | 72 | 2 | 269 | 383 | 326 | 440 | 2.44e-16 | 80.9 |
Msa0189740 | MtrunA17_Chr5g0403641 | 38.793 | 116 | 69 | 2 | 269 | 382 | 361 | 476 | 2.79e-16 | 80.9 |
Msa0189740 | MtrunA17_Chr8g0336741 | 36.522 | 115 | 73 | 0 | 269 | 383 | 332 | 446 | 2.99e-16 | 80.5 |
Msa0189740 | MtrunA17_Chr8g0339631 | 38.136 | 118 | 72 | 1 | 269 | 386 | 330 | 446 | 3.23e-16 | 80.5 |
Msa0189740 | MtrunA17_Chr8g0339451 | 37.931 | 116 | 70 | 2 | 269 | 383 | 324 | 438 | 5.31e-16 | 79.7 |
Msa0189740 | MtrunA17_Chr3g0079711 | 38.053 | 113 | 69 | 1 | 269 | 380 | 48 | 160 | 5.32e-16 | 75.9 |
Msa0189740 | MtrunA17_Chr8g0347271 | 36.522 | 115 | 73 | 0 | 269 | 383 | 334 | 448 | 1.29e-15 | 78.6 |
Msa0189740 | MtrunA17_Chr8g0374931 | 35.938 | 128 | 71 | 4 | 269 | 385 | 331 | 458 | 1.85e-15 | 78.2 |
Msa0189740 | MtrunA17_Chr5g0419761 | 37.984 | 129 | 69 | 2 | 269 | 386 | 334 | 462 | 1.92e-15 | 78.2 |
Msa0189740 | MtrunA17_Chr7g0232311 | 31.818 | 132 | 84 | 1 | 269 | 400 | 324 | 449 | 2.05e-15 | 77.8 |
Msa0189740 | MtrunA17_Chr7g0232341 | 24.434 | 442 | 261 | 15 | 11 | 383 | 3 | 440 | 2.05e-15 | 77.8 |
Msa0189740 | MtrunA17_Chr6g0449931 | 34.783 | 115 | 75 | 0 | 269 | 383 | 328 | 442 | 2.09e-15 | 77.8 |
Msa0189740 | MtrunA17_Chr6g0462531 | 25.173 | 433 | 252 | 15 | 15 | 378 | 5 | 434 | 2.13e-15 | 77.8 |
Msa0189740 | MtrunA17_Chr8g0339601 | 37.931 | 116 | 70 | 2 | 269 | 383 | 191 | 305 | 2.82e-15 | 76.6 |
Msa0189740 | MtrunA17_Chr1g0179901 | 38.843 | 121 | 62 | 2 | 269 | 377 | 341 | 461 | 3.34e-15 | 77.4 |
Msa0189740 | MtrunA17_Chr2g0294931 | 36.719 | 128 | 70 | 4 | 269 | 385 | 331 | 458 | 4.42e-15 | 77.0 |
Msa0189740 | MtrunA17_Chr7g0232331 | 33.621 | 116 | 75 | 2 | 269 | 383 | 326 | 440 | 5.01e-15 | 76.6 |
Msa0189740 | MtrunA17_Chr8g0350881 | 34.884 | 129 | 72 | 4 | 269 | 385 | 329 | 457 | 6.06e-15 | 76.6 |
Msa0189740 | MtrunA17_Chr2g0294941 | 33.594 | 128 | 74 | 4 | 269 | 385 | 229 | 356 | 6.69e-15 | 75.9 |
Msa0189740 | MtrunA17_Chr7g0218311 | 37.209 | 129 | 68 | 5 | 269 | 385 | 333 | 460 | 7.18e-15 | 76.3 |
Msa0189740 | MtrunA17_Chr5g0414331 | 32.237 | 152 | 92 | 5 | 268 | 412 | 314 | 461 | 7.25e-15 | 76.3 |
Msa0189740 | MtrunA17_Chr2g0294921 | 36.434 | 129 | 69 | 5 | 269 | 385 | 480 | 607 | 7.67e-15 | 76.6 |
Msa0189740 | MtrunA17_Chr6g0462571 | 37.273 | 110 | 67 | 2 | 269 | 377 | 322 | 430 | 9.00e-15 | 75.9 |
Msa0189740 | MtrunA17_Chr5g0442561 | 37.086 | 151 | 76 | 8 | 243 | 385 | 310 | 449 | 9.86e-15 | 75.9 |
Msa0189740 | MtrunA17_Chr5g0410941 | 33.758 | 157 | 85 | 8 | 269 | 408 | 339 | 493 | 1.13e-14 | 75.9 |
Msa0189740 | MtrunA17_Chr2g0278711 | 25.926 | 459 | 245 | 18 | 11 | 386 | 8 | 454 | 1.46e-14 | 75.5 |
Msa0189740 | MtrunA17_Chr8g0339461 | 35.345 | 116 | 73 | 2 | 269 | 383 | 332 | 446 | 1.50e-14 | 75.1 |
Msa0189740 | MtrunA17_Chr8g0339441 | 36.207 | 116 | 72 | 2 | 269 | 383 | 290 | 404 | 1.85e-14 | 74.7 |
Msa0189740 | MtrunA17_Chr3g0079731 | 37.168 | 113 | 70 | 1 | 269 | 380 | 340 | 452 | 2.02e-14 | 74.7 |
Msa0189740 | MtrunA17_Chr6g0462521 | 37.500 | 120 | 71 | 3 | 261 | 377 | 301 | 419 | 2.28e-14 | 74.7 |
Msa0189740 | MtrunA17_Chr8g0366391 | 34.677 | 124 | 74 | 2 | 269 | 386 | 333 | 455 | 2.50e-14 | 74.7 |
Msa0189740 | MtrunA17_Chr8g0334831 | 35.000 | 120 | 73 | 2 | 269 | 383 | 333 | 452 | 2.77e-14 | 74.3 |
Msa0189740 | MtrunA17_Chr6g0462551 | 44.578 | 83 | 45 | 1 | 269 | 350 | 325 | 407 | 4.49e-14 | 73.9 |
Msa0189740 | MtrunA17_Chr8g0334861 | 27.459 | 244 | 134 | 7 | 182 | 383 | 196 | 438 | 7.10e-14 | 73.2 |
Msa0189740 | MtrunA17_Chr8g0382021 | 34.028 | 144 | 85 | 5 | 267 | 401 | 343 | 485 | 8.26e-14 | 73.2 |
Msa0189740 | MtrunA17_Chr2g0319721 | 32.456 | 114 | 64 | 2 | 17 | 124 | 1 | 107 | 8.86e-14 | 69.3 |
Msa0189740 | MtrunA17_Chr5g0442491 | 38.400 | 125 | 66 | 6 | 269 | 385 | 330 | 451 | 8.86e-14 | 72.8 |
Msa0189740 | MtrunA17_Chr4g0072761 | 27.309 | 249 | 146 | 8 | 149 | 383 | 200 | 427 | 1.08e-13 | 72.4 |
Msa0189740 | MtrunA17_Chr8g0374971 | 33.333 | 129 | 74 | 4 | 269 | 385 | 329 | 457 | 1.19e-13 | 72.4 |
Msa0189740 | MtrunA17_Chr8g0361371 | 34.167 | 120 | 74 | 2 | 269 | 383 | 326 | 445 | 1.21e-13 | 72.4 |
Msa0189740 | MtrunA17_Chr8g0373301 | 36.207 | 116 | 72 | 2 | 269 | 383 | 327 | 441 | 1.24e-13 | 72.4 |
Msa0189740 | MtrunA17_Chr8g0370941 | 39.831 | 118 | 65 | 4 | 269 | 382 | 343 | 458 | 2.16e-13 | 71.6 |
Msa0189740 | MtrunA17_Chr7g0265051 | 44.681 | 94 | 44 | 3 | 272 | 357 | 338 | 431 | 2.35e-13 | 71.6 |
Msa0189740 | MtrunA17_Chr5g0431441 | 22.096 | 439 | 269 | 14 | 14 | 389 | 18 | 446 | 2.58e-13 | 71.2 |
Msa0189740 | MtrunA17_Chr5g0431361 | 21.573 | 445 | 270 | 16 | 6 | 387 | 4 | 432 | 2.78e-13 | 71.2 |
Msa0189740 | MtrunA17_Chr7g0265041 | 33.594 | 128 | 73 | 3 | 271 | 386 | 339 | 466 | 2.84e-13 | 71.2 |
Msa0189740 | MtrunA17_Chr6g0462541 | 36.697 | 109 | 67 | 2 | 270 | 377 | 325 | 432 | 2.94e-13 | 71.2 |
Msa0189740 | MtrunA17_Chr8g0374941 | 33.333 | 129 | 74 | 4 | 269 | 385 | 328 | 456 | 3.05e-13 | 72.0 |
Msa0189740 | MtrunA17_Chr8g0374941 | 33.333 | 129 | 74 | 4 | 269 | 385 | 793 | 921 | 3.42e-12 | 68.6 |
Msa0189740 | MtrunA17_Chr8g0374941 | 31.783 | 129 | 76 | 4 | 269 | 385 | 1266 | 1394 | 1.03e-11 | 67.0 |
Msa0189740 | MtrunA17_Chr5g0442541 | 37.748 | 151 | 75 | 8 | 243 | 385 | 303 | 442 | 3.09e-13 | 71.2 |
Msa0189740 | MtrunA17_Chr5g0420801 | 44.828 | 87 | 47 | 1 | 261 | 346 | 313 | 399 | 4.77e-13 | 70.5 |
Msa0189740 | MtrunA17_Chr5g0419771 | 36.752 | 117 | 60 | 3 | 269 | 382 | 360 | 465 | 5.01e-13 | 70.9 |
Msa0189740 | MtrunA17_Chr4g0044511 | 35.714 | 126 | 73 | 3 | 269 | 386 | 357 | 482 | 5.27e-13 | 70.5 |
Msa0189740 | MtrunA17_Chr4g0044511 | 30.894 | 123 | 82 | 2 | 8 | 128 | 34 | 155 | 1.17e-11 | 66.2 |
Msa0189740 | MtrunA17_Chr5g0401721 | 34.899 | 149 | 78 | 5 | 268 | 403 | 331 | 473 | 5.87e-13 | 70.5 |
Msa0189740 | MtrunA17_Chr6g0463861 | 34.615 | 130 | 71 | 5 | 269 | 385 | 322 | 450 | 7.62e-13 | 70.1 |
Msa0189740 | MtrunA17_Chr5g0442511 | 38.710 | 124 | 65 | 6 | 269 | 384 | 349 | 469 | 8.01e-13 | 70.1 |
Msa0189740 | MtrunA17_Chr1g0173121 | 28.507 | 221 | 138 | 7 | 197 | 406 | 253 | 464 | 1.19e-12 | 69.3 |
Msa0189740 | MtrunA17_Chr4g0066261 | 32.237 | 152 | 86 | 5 | 251 | 385 | 307 | 458 | 1.29e-12 | 69.3 |
Msa0189740 | MtrunA17_Chr4g0066171 | 34.884 | 129 | 70 | 5 | 269 | 386 | 329 | 454 | 1.43e-12 | 69.3 |
Msa0189740 | MtrunA17_Chr6g0463851 | 30.573 | 157 | 91 | 6 | 269 | 408 | 331 | 486 | 1.46e-12 | 69.3 |
Msa0189740 | MtrunA17_Chr5g0442521 | 37.594 | 133 | 72 | 6 | 261 | 385 | 323 | 452 | 1.50e-12 | 68.9 |
Msa0189740 | MtrunA17_Chr8g0374901 | 31.210 | 157 | 90 | 6 | 269 | 408 | 327 | 482 | 1.60e-12 | 68.9 |
Msa0189740 | MtrunA17_Chr7g0243681 | 34.646 | 127 | 70 | 3 | 271 | 384 | 329 | 455 | 1.68e-12 | 68.9 |
Msa0189740 | MtrunA17_Chr5g0428081 | 33.594 | 128 | 74 | 5 | 269 | 385 | 329 | 456 | 1.78e-12 | 68.9 |
Msa0189740 | MtrunA17_Chr4g0063711 | 67.442 | 43 | 13 | 1 | 87 | 129 | 1 | 42 | 2.28e-12 | 62.4 |
Msa0189740 | MtrunA17_Chr1g0207981 | 24.427 | 262 | 154 | 8 | 192 | 413 | 224 | 481 | 2.99e-12 | 68.2 |
Msa0189740 | MtrunA17_Chr4g0066221 | 31.646 | 158 | 88 | 7 | 269 | 408 | 329 | 484 | 3.30e-12 | 68.2 |
Msa0189740 | MtrunA17_Chr1g0207951 | 28.405 | 257 | 150 | 10 | 183 | 406 | 855 | 1110 | 4.35e-12 | 68.2 |
Msa0189740 | MtrunA17_Chr4g0066131 | 33.333 | 129 | 74 | 4 | 269 | 385 | 323 | 451 | 4.50e-12 | 67.8 |
Msa0189740 | MtrunA17_Chr6g0454171 | 33.607 | 122 | 74 | 3 | 265 | 385 | 171 | 286 | 4.65e-12 | 66.6 |
Msa0189740 | MtrunA17_Chr6g0454151 | 31.967 | 122 | 76 | 3 | 265 | 385 | 339 | 454 | 5.17e-12 | 67.4 |
Msa0189740 | MtrunA17_Chr6g0464871 | 26.154 | 260 | 146 | 9 | 188 | 407 | 216 | 469 | 5.64e-12 | 67.4 |
Msa0189740 | MtrunA17_Chr4g0066151 | 32.812 | 128 | 74 | 4 | 269 | 384 | 328 | 455 | 6.49e-12 | 67.0 |
Msa0189740 | MtrunA17_Chr4g0044501 | 33.333 | 120 | 73 | 3 | 273 | 386 | 335 | 453 | 6.52e-12 | 67.0 |
Msa0189740 | MtrunA17_Chr7g0265101 | 41.489 | 94 | 47 | 2 | 272 | 357 | 340 | 433 | 7.84e-12 | 67.0 |
Msa0189740 | MtrunA17_Chr6g0464881 | 32.456 | 114 | 73 | 3 | 268 | 380 | 316 | 426 | 8.42e-12 | 66.6 |
Msa0189740 | MtrunA17_Chr4g0066201 | 33.582 | 134 | 75 | 5 | 269 | 392 | 327 | 456 | 9.63e-12 | 66.6 |
Msa0189740 | MtrunA17_Chr7g0265141 | 42.029 | 69 | 40 | 0 | 271 | 339 | 336 | 404 | 9.71e-12 | 66.6 |
Msa0189740 | MtrunA17_Chr1g0159551 | 29.016 | 193 | 125 | 6 | 202 | 389 | 255 | 440 | 1.10e-11 | 66.2 |
Msa0189740 | MtrunA17_Chr2g0302991 | 38.655 | 119 | 62 | 4 | 269 | 385 | 323 | 432 | 1.18e-11 | 66.2 |
Msa0189740 | MtrunA17_Chr4g0011051 | 48.000 | 75 | 38 | 1 | 272 | 346 | 340 | 413 | 1.21e-11 | 66.2 |
Msa0189740 | MtrunA17_Chr5g0448521 | 33.600 | 125 | 72 | 5 | 269 | 385 | 323 | 444 | 1.46e-11 | 65.9 |
Msa0189740 | MtrunA17_Chr7g0250001 | 28.966 | 145 | 95 | 4 | 268 | 407 | 309 | 450 | 1.50e-11 | 65.9 |
Msa0189740 | MtrunA17_Chr7g0243631 | 33.077 | 130 | 72 | 4 | 271 | 386 | 336 | 464 | 1.71e-11 | 65.9 |
Msa0189740 | MtrunA17_Chr2g0329111 | 36.667 | 120 | 70 | 4 | 269 | 383 | 330 | 448 | 1.78e-11 | 65.9 |
Msa0189740 | MtrunA17_Chr8g0334851 | 30.709 | 127 | 86 | 2 | 269 | 394 | 330 | 455 | 1.81e-11 | 65.9 |
Msa0189740 | MtrunA17_Chr7g0265151 | 44.118 | 68 | 38 | 0 | 272 | 339 | 335 | 402 | 2.36e-11 | 65.5 |
Msa0189740 | MtrunA17_Chr8g0361411 | 38.947 | 95 | 55 | 2 | 260 | 352 | 306 | 399 | 2.53e-11 | 65.1 |
Msa0189740 | MtrunA17_Chr2g0321321 | 37.391 | 115 | 58 | 4 | 17 | 125 | 1 | 107 | 2.76e-11 | 61.2 |
Msa0189740 | MtrunA17_Chr5g0442581 | 33.553 | 152 | 82 | 8 | 242 | 385 | 313 | 453 | 5.00e-11 | 64.3 |
Msa0189740 | MtrunA17_Chr4g0014061 | 35.294 | 136 | 73 | 6 | 263 | 383 | 312 | 447 | 5.62e-11 | 64.3 |
Msa0189740 | MtrunA17_Chr4g0066141 | 23.224 | 366 | 218 | 15 | 39 | 384 | 5 | 327 | 5.79e-11 | 63.5 |
Msa0189740 | MtrunA17_Chr3g0098111 | 27.966 | 236 | 130 | 8 | 183 | 380 | 208 | 441 | 7.09e-11 | 63.9 |
Msa0189740 | MtrunA17_Chr3g0078841 | 30.894 | 123 | 78 | 3 | 265 | 386 | 339 | 455 | 9.80e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189740 | AT2G22590.1 | 36.034 | 469 | 229 | 9 | 6 | 408 | 7 | 470 | 1.18e-94 | 292 |
Msa0189740 | AT5G65550.1 | 34.348 | 460 | 226 | 11 | 13 | 404 | 8 | 459 | 4.07e-87 | 273 |
Msa0189740 | AT5G49690.1 | 34.014 | 441 | 238 | 7 | 13 | 401 | 9 | 448 | 1.51e-82 | 261 |
Msa0189740 | AT2G22930.1 | 30.023 | 443 | 261 | 11 | 12 | 409 | 4 | 442 | 5.52e-50 | 175 |
Msa0189740 | AT4G09500.2 | 29.663 | 445 | 248 | 14 | 13 | 404 | 5 | 437 | 9.29e-50 | 174 |
Msa0189740 | AT5G53990.1 | 29.797 | 443 | 254 | 12 | 11 | 404 | 3 | 437 | 4.80e-49 | 172 |
Msa0189740 | AT4G09500.1 | 30.626 | 431 | 247 | 16 | 13 | 409 | 5 | 417 | 1.78e-46 | 165 |
Msa0189740 | AT3G29630.1 | 30.222 | 450 | 242 | 13 | 13 | 404 | 5 | 440 | 3.00e-46 | 165 |
Msa0189740 | AT1G64920.1 | 29.111 | 450 | 254 | 14 | 10 | 404 | 2 | 441 | 1.58e-44 | 160 |
Msa0189740 | AT1G64910.1 | 29.047 | 451 | 249 | 13 | 10 | 404 | 2 | 437 | 2.41e-43 | 157 |
Msa0189740 | AT3G29630.2 | 30.023 | 433 | 239 | 15 | 13 | 404 | 5 | 414 | 1.30e-42 | 155 |
Msa0189740 | AT1G50580.1 | 28.153 | 444 | 257 | 11 | 13 | 404 | 5 | 438 | 7.02e-41 | 150 |
Msa0189740 | AT4G27560.1 | 28.132 | 455 | 247 | 14 | 13 | 404 | 6 | 443 | 9.60e-41 | 150 |
Msa0189740 | AT4G27570.1 | 28.352 | 455 | 246 | 14 | 13 | 404 | 6 | 443 | 1.09e-40 | 150 |
Msa0189740 | AT5G54010.1 | 28.251 | 446 | 263 | 13 | 13 | 406 | 5 | 445 | 1.27e-40 | 150 |
Msa0189740 | AT5G54060.1 | 27.004 | 474 | 256 | 15 | 1 | 400 | 1 | 458 | 1.55e-39 | 147 |
Msa0189740 | AT2G16890.2 | 26.966 | 445 | 244 | 16 | 14 | 386 | 9 | 444 | 5.54e-25 | 107 |
Msa0189740 | AT5G12890.1 | 26.915 | 457 | 249 | 19 | 7 | 383 | 3 | 454 | 1.78e-21 | 96.7 |
Msa0189740 | AT2G16890.3 | 26.895 | 409 | 222 | 15 | 14 | 354 | 9 | 408 | 4.33e-21 | 95.1 |
Msa0189740 | AT4G01070.1 | 42.609 | 115 | 66 | 0 | 269 | 383 | 328 | 442 | 7.26e-19 | 89.0 |
Msa0189740 | AT2G22930.2 | 27.803 | 223 | 140 | 5 | 12 | 215 | 4 | 224 | 8.25e-19 | 86.7 |
Msa0189740 | AT3G50740.1 | 38.095 | 126 | 76 | 2 | 260 | 383 | 322 | 447 | 1.20e-18 | 88.2 |
Msa0189740 | AT1G10400.1 | 24.494 | 445 | 258 | 16 | 11 | 386 | 4 | 439 | 3.86e-18 | 86.7 |
Msa0189740 | AT1G01420.1 | 40.000 | 115 | 68 | 1 | 269 | 383 | 328 | 441 | 1.45e-17 | 85.1 |
Msa0189740 | AT1G01420.2 | 40.000 | 115 | 68 | 1 | 269 | 383 | 331 | 444 | 1.48e-17 | 85.1 |
Msa0189740 | AT4G36770.1 | 38.462 | 117 | 71 | 1 | 269 | 385 | 325 | 440 | 2.33e-17 | 84.3 |
Msa0189740 | AT5G17050.1 | 36.242 | 149 | 86 | 4 | 261 | 404 | 312 | 456 | 3.93e-17 | 83.6 |
Msa0189740 | AT3G53160.1 | 24.587 | 484 | 251 | 21 | 9 | 398 | 3 | 466 | 7.44e-17 | 82.8 |
Msa0189740 | AT5G26310.1 | 34.615 | 130 | 83 | 2 | 255 | 383 | 312 | 440 | 4.56e-16 | 80.5 |
Msa0189740 | AT1G30530.1 | 38.710 | 124 | 71 | 3 | 261 | 383 | 306 | 425 | 2.28e-15 | 78.2 |
Msa0189740 | AT2G18570.1 | 40.336 | 119 | 66 | 3 | 269 | 383 | 324 | 441 | 2.46e-15 | 78.2 |
Msa0189740 | AT3G16520.2 | 33.103 | 145 | 84 | 4 | 246 | 384 | 304 | 441 | 5.56e-15 | 77.0 |
Msa0189740 | AT3G16520.1 | 33.103 | 145 | 84 | 4 | 246 | 384 | 304 | 441 | 6.08e-15 | 76.6 |
Msa0189740 | AT3G16520.3 | 34.091 | 132 | 76 | 3 | 257 | 384 | 317 | 441 | 6.47e-15 | 76.6 |
Msa0189740 | AT5G66690.1 | 34.400 | 125 | 80 | 2 | 260 | 383 | 317 | 440 | 6.47e-15 | 77.0 |
Msa0189740 | AT4G34138.1 | 40.323 | 124 | 64 | 5 | 269 | 386 | 337 | 456 | 1.33e-14 | 75.9 |
Msa0189740 | AT4G34131.1 | 34.483 | 145 | 81 | 4 | 269 | 400 | 336 | 479 | 1.33e-14 | 75.9 |
Msa0189740 | AT2G15490.1 | 37.398 | 123 | 71 | 3 | 269 | 386 | 337 | 458 | 1.34e-14 | 75.9 |
Msa0189740 | AT2G15490.3 | 37.398 | 123 | 71 | 3 | 269 | 386 | 334 | 455 | 1.34e-14 | 75.9 |
Msa0189740 | AT5G38040.1 | 25.490 | 459 | 239 | 22 | 22 | 404 | 18 | 449 | 1.92e-14 | 75.1 |
Msa0189740 | AT5G05880.1 | 23.025 | 443 | 254 | 12 | 7 | 383 | 2 | 423 | 2.06e-14 | 75.1 |
Msa0189740 | AT2G30140.2 | 21.951 | 451 | 281 | 16 | 10 | 401 | 9 | 447 | 3.41e-14 | 74.3 |
Msa0189740 | AT3G53150.1 | 45.122 | 82 | 40 | 1 | 271 | 347 | 351 | 432 | 5.19e-14 | 74.3 |
Msa0189740 | AT4G15280.1 | 34.356 | 163 | 85 | 6 | 258 | 404 | 321 | 477 | 5.81e-14 | 73.9 |
Msa0189740 | AT4G15280.2 | 34.356 | 163 | 85 | 6 | 258 | 404 | 353 | 509 | 5.92e-14 | 73.9 |
Msa0189740 | AT2G18560.1 | 35.294 | 119 | 72 | 3 | 269 | 383 | 234 | 351 | 6.67e-14 | 73.2 |
Msa0189740 | AT1G51210.1 | 35.484 | 124 | 63 | 3 | 269 | 384 | 319 | 433 | 6.90e-14 | 73.6 |
Msa0189740 | AT5G59590.1 | 26.016 | 246 | 144 | 8 | 192 | 404 | 209 | 449 | 7.08e-14 | 73.6 |
Msa0189740 | AT1G01390.1 | 37.391 | 115 | 72 | 0 | 269 | 383 | 328 | 442 | 1.86e-13 | 72.4 |
Msa0189740 | AT1G01390.2 | 37.391 | 115 | 72 | 0 | 269 | 383 | 345 | 459 | 1.89e-13 | 72.4 |
Msa0189740 | AT5G17030.1 | 36.522 | 115 | 69 | 2 | 269 | 383 | 320 | 430 | 2.45e-13 | 72.0 |
Msa0189740 | AT5G59580.1 | 26.016 | 246 | 144 | 8 | 192 | 404 | 207 | 447 | 2.48e-13 | 72.0 |
Msa0189740 | AT2G15480.1 | 37.398 | 123 | 71 | 3 | 269 | 386 | 337 | 458 | 2.56e-13 | 72.0 |
Msa0189740 | AT5G03490.1 | 39.048 | 105 | 56 | 2 | 269 | 365 | 323 | 427 | 3.09e-13 | 71.6 |
Msa0189740 | AT2G29730.1 | 21.951 | 451 | 265 | 18 | 11 | 386 | 2 | 440 | 3.34e-13 | 71.6 |
Msa0189740 | AT2G29710.1 | 23.961 | 409 | 226 | 17 | 11 | 346 | 2 | 398 | 3.88e-13 | 71.2 |
Msa0189740 | AT2G30140.1 | 21.903 | 452 | 281 | 17 | 10 | 401 | 9 | 448 | 8.51e-13 | 70.1 |
Msa0189740 | AT5G14860.1 | 29.412 | 153 | 98 | 3 | 272 | 415 | 335 | 486 | 1.16e-12 | 70.1 |
Msa0189740 | AT1G07250.1 | 38.843 | 121 | 65 | 4 | 269 | 384 | 332 | 448 | 1.19e-12 | 69.7 |
Msa0189740 | AT5G17040.1 | 35.043 | 117 | 72 | 2 | 267 | 383 | 302 | 414 | 1.68e-12 | 69.3 |
Msa0189740 | AT2G29750.1 | 34.483 | 145 | 85 | 5 | 269 | 404 | 334 | 477 | 2.04e-12 | 68.9 |
Msa0189740 | AT5G17040.2 | 35.043 | 117 | 72 | 2 | 267 | 383 | 200 | 312 | 2.16e-12 | 68.2 |
Msa0189740 | AT3G46670.1 | 26.122 | 245 | 139 | 9 | 192 | 401 | 208 | 445 | 2.42e-12 | 68.9 |
Msa0189740 | AT1G07260.1 | 46.835 | 79 | 40 | 2 | 269 | 346 | 331 | 408 | 3.42e-12 | 68.6 |
Msa0189740 | AT2G26480.1 | 28.511 | 235 | 127 | 8 | 182 | 383 | 194 | 420 | 3.56e-12 | 68.2 |
Msa0189740 | AT1G06000.1 | 38.318 | 107 | 58 | 2 | 269 | 374 | 296 | 395 | 7.61e-12 | 67.0 |
Msa0189740 | AT1G07240.1 | 40.000 | 110 | 61 | 3 | 269 | 378 | 331 | 435 | 7.97e-12 | 67.4 |
Msa0189740 | AT2G15480.2 | 35.338 | 133 | 70 | 5 | 269 | 386 | 337 | 468 | 1.02e-11 | 67.0 |
Msa0189740 | AT2G36970.1 | 31.624 | 117 | 77 | 3 | 269 | 385 | 334 | 447 | 1.03e-11 | 67.0 |
Msa0189740 | AT2G36760.1 | 43.662 | 71 | 40 | 0 | 269 | 339 | 338 | 408 | 1.42e-11 | 66.6 |
Msa0189740 | AT2G36780.1 | 43.662 | 71 | 40 | 0 | 269 | 339 | 338 | 408 | 1.44e-11 | 66.6 |
Msa0189740 | AT1G05680.1 | 30.508 | 118 | 79 | 3 | 266 | 382 | 311 | 426 | 1.67e-11 | 66.2 |
Msa0189740 | AT4G34135.1 | 50.000 | 62 | 31 | 0 | 269 | 330 | 336 | 397 | 1.69e-11 | 66.2 |
Msa0189740 | AT4G15260.1 | 32.716 | 162 | 86 | 6 | 258 | 402 | 201 | 356 | 2.18e-11 | 65.5 |
Msa0189740 | AT3G21760.1 | 36.800 | 125 | 68 | 4 | 269 | 385 | 336 | 457 | 2.56e-11 | 65.9 |
Msa0189740 | AT2G36770.1 | 40.845 | 71 | 42 | 0 | 269 | 339 | 338 | 408 | 5.32e-11 | 64.7 |
Msa0189740 | AT2G43820.1 | 29.310 | 116 | 81 | 1 | 268 | 382 | 305 | 420 | 6.09e-11 | 64.3 |
Msa0189740 | AT3G46660.1 | 31.655 | 139 | 82 | 5 | 269 | 401 | 321 | 452 | 6.33e-11 | 64.3 |
Find 95 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACCTTCATAGGCTAGTTTA+AGG | 0.186314 | 2_1:-5189009 | None:intergenic |
ACCCTTTGAAGCTAGAATTT+TGG | 0.228078 | 2_1:-5188819 | None:intergenic |
TCCGTTGTTTACATTGGATT+TGG | 0.231538 | 2_1:+5189568 | Msa0189740:CDS |
GATGAATGGTTCAATGGTTT+TGG | 0.242647 | 2_1:-5188897 | None:intergenic |
CATTGAACCATTCATCAAAT+TGG | 0.256878 | 2_1:+5188904 | Msa0189740:CDS |
GTTTGAAAAGGAACCCATTT+TGG | 0.259128 | 2_1:-5189248 | None:intergenic |
ACATGTGTGGCCCACCAAAA+TGG | 0.271580 | 2_1:+5189234 | Msa0189740:CDS |
AAACATTGGTCAAGCAAATA+AGG | 0.290276 | 2_1:-5189871 | None:intergenic |
GTTATTGAGAAGGTTCATTT+TGG | 0.303213 | 2_1:+5189829 | Msa0189740:CDS |
GTCTACTTAGTTGTTGGAAT+TGG | 0.339135 | 2_1:-5190130 | None:intergenic |
CAAAGCATCAAAACCTGATT+GGG | 0.341964 | 2_1:+5189057 | Msa0189740:CDS |
CCGTTGTTTACATTGGATTT+GGG | 0.345830 | 2_1:+5189569 | Msa0189740:CDS |
TGTATGAGTCATTGTGGTTC+TGG | 0.355774 | 2_1:+5189802 | Msa0189740:CDS |
GTTCTTTCCTCAAATCCTTC+AGG | 0.356483 | 2_1:-5189706 | None:intergenic |
AGGAACAATGCTAAAGAGTT+GGG | 0.371032 | 2_1:+5190027 | Msa0189740:CDS |
TCAAAGCATCAAAACCTGAT+TGG | 0.377948 | 2_1:+5189056 | Msa0189740:CDS |
ATGAGGAAGGAAGTACTTTC+AGG | 0.380797 | 2_1:+5190007 | Msa0189740:CDS |
AAGATTCCTGTTGTTCCTGT+TGG | 0.390437 | 2_1:+5189446 | Msa0189740:CDS |
CTCATTGAGGTTGGCAATTG+TGG | 0.391150 | 2_1:+5189984 | Msa0189740:CDS |
CAATTTGATGAATGGTTCAA+TGG | 0.392683 | 2_1:-5188903 | None:intergenic |
ATCTTAGCTCATGGAGCAAT+TGG | 0.393462 | 2_1:+5189775 | Msa0189740:CDS |
TCATCTCTTATCTGCATAGA+TGG | 0.398939 | 2_1:-5189479 | None:intergenic |
TTGATGCTCTTTACAAGTAT+AGG | 0.399031 | 2_1:+5190100 | Msa0189740:CDS |
TTAAGGAAACAGTTCATGTT+TGG | 0.399852 | 2_1:-5188992 | None:intergenic |
AAATCAGTCTACTTAGTTGT+TGG | 0.401380 | 2_1:-5190136 | None:intergenic |
ACAGCTCTTAGAAATGAATC+AGG | 0.405796 | 2_1:+5189311 | Msa0189740:CDS |
AATCTTACCAATTTGATGAA+TGG | 0.407329 | 2_1:-5188911 | None:intergenic |
TGAATTACCTGAAGGATTTG+AGG | 0.419663 | 2_1:+5189699 | Msa0189740:CDS |
GGAAGAGAACAATCCTGATT+GGG | 0.424257 | 2_1:+5189508 | Msa0189740:CDS |
CTCATAAGGTTTGAGATGAA+TGG | 0.439473 | 2_1:-5189273 | None:intergenic |
AGCTTTGTTGAGATCAAAAC+CGG | 0.439999 | 2_1:-5189342 | None:intergenic |
CATGTGTGGCCCACCAAAAT+GGG | 0.441495 | 2_1:+5189235 | Msa0189740:CDS |
AGCAACCCAACAGGAACAAC+AGG | 0.444962 | 2_1:-5189452 | None:intergenic |
AGGAAGAGAACAATCCTGAT+TGG | 0.446115 | 2_1:+5189507 | Msa0189740:CDS |
AGATTCCTGTTGTTCCTGTT+GGG | 0.448396 | 2_1:+5189447 | Msa0189740:CDS |
AGCCAAAATTCTAGCTTCAA+AGG | 0.457844 | 2_1:+5188817 | Msa0189740:CDS |
TTCAAGGGCATTGGTGGAAA+AGG | 0.458847 | 2_1:+5189897 | Msa0189740:CDS |
AGGAAACAGTTCATGTTTGG+TGG | 0.459951 | 2_1:-5188989 | None:intergenic |
ATCATCTTCGAGACCTTCAT+AGG | 0.460728 | 2_1:-5189020 | None:intergenic |
TTCTGGTTCTGTTATTGAGA+AGG | 0.463352 | 2_1:+5189819 | Msa0189740:CDS |
GGGGAAAATCAAAGGGTGGT+TGG | 0.465354 | 2_1:+5189528 | Msa0189740:CDS |
CAGGAACAATGCTAAAGAGT+TGG | 0.467790 | 2_1:+5190026 | Msa0189740:CDS |
AGATGAATGGTTGTTTGAAA+AGG | 0.476626 | 2_1:-5189260 | None:intergenic |
AAATCATAGAAAACCCAATC+AGG | 0.476672 | 2_1:-5189070 | None:intergenic |
TCATCTTCCGTTGTTTACAT+TGG | 0.481629 | 2_1:+5189562 | Msa0189740:CDS |
AAAGCTCTAATAATCTCATA+AGG | 0.484440 | 2_1:-5189287 | None:intergenic |
TCCTGATTGGGGAAAATCAA+AGG | 0.495393 | 2_1:+5189520 | Msa0189740:CDS |
GCCAAAATTCTAGCTTCAAA+GGG | 0.499913 | 2_1:+5188818 | Msa0189740:CDS |
GCGGAATTGTTTGGAAAACA+TGG | 0.500779 | 2_1:+5189737 | Msa0189740:CDS |
TTCCTTAAACTAGCCTATGA+AGG | 0.500994 | 2_1:+5189007 | Msa0189740:CDS |
AATGCTCCCATGGCTAGCTA+TGG | 0.504546 | 2_1:+5188769 | Msa0189740:CDS |
CAAGAGAGCTTGAAGGTGAA+TGG | 0.507014 | 2_1:+5189399 | Msa0189740:CDS |
GATGGTGGAAGCAACCCAAC+AGG | 0.510694 | 2_1:-5189461 | None:intergenic |
GACCCATCTTCCTCACTCCT+TGG | 0.513951 | 2_1:-5189937 | None:intergenic |
AGAGCTTGAAGGTGAATGGT+TGG | 0.522980 | 2_1:+5189403 | Msa0189740:CDS |
TTCATATTGTAATGCTCCCA+TGG | 0.525276 | 2_1:+5188759 | Msa0189740:CDS |
GGCTTTGAAGAATCTGAAAG+AGG | 0.525627 | 2_1:+5189669 | Msa0189740:intron |
AATGAATCAGGTGGAATAGC+CGG | 0.526603 | 2_1:+5189323 | Msa0189740:CDS |
TTGGCAATTGTGGATGAGGA+AGG | 0.527022 | 2_1:+5189994 | Msa0189740:CDS |
ACTTAGTTGTTGGAATTGGA+AGG | 0.530449 | 2_1:-5190126 | None:intergenic |
CAGCTTAAGATCTTAGCTCA+TGG | 0.532956 | 2_1:+5189766 | Msa0189740:CDS |
TTAGCTCATGGAGCAATTGG+TGG | 0.539774 | 2_1:+5189778 | Msa0189740:CDS |
TACCAAGGAGTGAGGAAGAT+GGG | 0.543111 | 2_1:+5189935 | Msa0189740:CDS |
GGCATTGGTGGAAAAGGAAG+TGG | 0.545558 | 2_1:+5189903 | Msa0189740:CDS |
GCAGATAAGAGATGATGAAG+AGG | 0.548305 | 2_1:+5189487 | Msa0189740:CDS |
CACATAGAGCAACTCCCACC+AGG | 0.555367 | 2_1:+5188944 | Msa0189740:CDS |
AGAACATCAAGAGAGCTTGA+AGG | 0.556805 | 2_1:+5189392 | Msa0189740:CDS |
GTACCAAGGAGTGAGGAAGA+TGG | 0.559085 | 2_1:+5189934 | Msa0189740:CDS |
CCTGATTGGGGAAAATCAAA+GGG | 0.559221 | 2_1:+5189521 | Msa0189740:CDS |
AGTGGCTCACTCATTGAGGT+TGG | 0.564496 | 2_1:+5189975 | Msa0189740:CDS |
ATGCTCCCATGGCTAGCTAT+GGG | 0.566979 | 2_1:+5188770 | Msa0189740:CDS |
GAGGTTGGCAATTGTGGATG+AGG | 0.567885 | 2_1:+5189990 | Msa0189740:CDS |
ACTCAGTGGCTCACTCATTG+AGG | 0.575687 | 2_1:+5189971 | Msa0189740:CDS |
ATGTGTCCCATAGCTAGCCA+TGG | 0.577673 | 2_1:-5188776 | None:intergenic |
AGTTGCTCTATGTGTGGTAA+AGG | 0.583218 | 2_1:-5188935 | None:intergenic |
ATGCCCTTGAAAACAAACAT+TGG | 0.605083 | 2_1:-5189885 | None:intergenic |
CGGAATTGTTTGGAAAACAT+GGG | 0.607668 | 2_1:+5189738 | Msa0189740:CDS |
GCTCTTAGAAATGAATCAGG+TGG | 0.616825 | 2_1:+5189314 | Msa0189740:CDS |
TCTCTTATCTGCATAGATGG+TGG | 0.617257 | 2_1:-5189476 | None:intergenic |
TGTGTCCCATAGCTAGCCAT+GGG | 0.617525 | 2_1:-5188775 | None:intergenic |
GAAGAGAACAATCCTGATTG+GGG | 0.621613 | 2_1:+5189509 | Msa0189740:CDS |
AAGTGGCTGTTGAGGTACCA+AGG | 0.625935 | 2_1:+5189920 | Msa0189740:CDS |
GCTTTGAAGAATCTGAAAGA+GGG | 0.631019 | 2_1:+5189670 | Msa0189740:intron |
CAATGCTAAAGAGTTGGGGA+AGG | 0.637832 | 2_1:+5190032 | Msa0189740:CDS |
GGAACAATGCTAAAGAGTTG+GGG | 0.638966 | 2_1:+5190028 | Msa0189740:CDS |
GGTACACTTGAATTACCTGA+AGG | 0.639501 | 2_1:+5189691 | Msa0189740:CDS |
GGTGGGAGTTGCTCTATGTG+TGG | 0.643511 | 2_1:-5188941 | None:intergenic |
CCCAAATCCAATGTAAACAA+CGG | 0.649784 | 2_1:-5189569 | None:intergenic |
ACCAGGTGCAGAAAATACAA+TGG | 0.658975 | 2_1:+5188961 | Msa0189740:CDS |
GGTGGATGTATGAGTCATTG+TGG | 0.663738 | 2_1:+5189796 | Msa0189740:CDS |
GGAAAAGGAAGTGGCTGTTG+AGG | 0.666241 | 2_1:+5189912 | Msa0189740:CDS |
TGTTGAGGTACCAAGGAGTG+AGG | 0.669048 | 2_1:+5189927 | Msa0189740:CDS |
TTCAAACTTGAAGACATGTG+TGG | 0.698358 | 2_1:+5189221 | Msa0189740:CDS |
TGAGCTAAGATCTTAAGCTG+AGG | 0.704105 | 2_1:-5189763 | None:intergenic |
GATTGGGGAAAATCAAAGGG+TGG | 0.705630 | 2_1:+5189524 | Msa0189740:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATCTTACCAATTTGATGAA+TGG | - | chr2_1:5188914-5188933 | None:intergenic | 25.0% |
!! | AAAGCTCTAATAATCTCATA+AGG | - | chr2_1:5189290-5189309 | None:intergenic | 25.0% |
! | AATCTTACCAATTTGATGAA+TGG | - | chr2_1:5188914-5188933 | None:intergenic | 25.0% |
!! | AAAGCTCTAATAATCTCATA+AGG | - | chr2_1:5189290-5189309 | None:intergenic | 25.0% |
!! | TTTTGGCTACTTCAAAGTAA+GGG | - | chr2_1:5188805-5188824 | None:intergenic | 30.0% |
!!! | ATTTTGGCTACTTCAAAGTA+AGG | - | chr2_1:5188806-5188825 | None:intergenic | 30.0% |
! | ATGAATGGTTCAATGGTTTT+GGG | - | chr2_1:5188899-5188918 | None:intergenic | 30.0% |
CAATTTGATGAATGGTTCAA+TGG | - | chr2_1:5188906-5188925 | None:intergenic | 30.0% | |
CATTGAACCATTCATCAAAT+TGG | + | chr2_1:5188904-5188923 | Msa0189740:CDS | 30.0% | |
TTAAGGAAACAGTTCATGTT+TGG | - | chr2_1:5188995-5189014 | None:intergenic | 30.0% | |
AAATCATAGAAAACCCAATC+AGG | - | chr2_1:5189073-5189092 | None:intergenic | 30.0% | |
! | GTTTTCTATGATTTTGCAAG+TGG | + | chr2_1:5189079-5189098 | Msa0189740:CDS | 30.0% |
!!! | TTTGTTTTGACTTGATCCTT+AGG | - | chr2_1:5189193-5189212 | None:intergenic | 30.0% |
AGATGAATGGTTGTTTGAAA+AGG | - | chr2_1:5189263-5189282 | None:intergenic | 30.0% | |
TCAGAATGATTTAACTGAGT+TGG | + | chr2_1:5189609-5189628 | Msa0189740:intron | 30.0% | |
! | GTTATTGAGAAGGTTCATTT+TGG | + | chr2_1:5189829-5189848 | Msa0189740:CDS | 30.0% |
AAACATTGGTCAAGCAAATA+AGG | - | chr2_1:5189874-5189893 | None:intergenic | 30.0% | |
!! | TTGACCAATGTTTGTTTTCA+AGG | + | chr2_1:5189881-5189900 | Msa0189740:CDS | 30.0% |
!! | TGACCAATGTTTGTTTTCAA+GGG | + | chr2_1:5189882-5189901 | Msa0189740:CDS | 30.0% |
TTGATGCTCTTTACAAGTAT+AGG | + | chr2_1:5190100-5190119 | Msa0189740:CDS | 30.0% | |
!! | TTTTGGCTACTTCAAAGTAA+GGG | - | chr2_1:5188805-5188824 | None:intergenic | 30.0% |
!!! | ATTTTGGCTACTTCAAAGTA+AGG | - | chr2_1:5188806-5188825 | None:intergenic | 30.0% |
! | ATGAATGGTTCAATGGTTTT+GGG | - | chr2_1:5188899-5188918 | None:intergenic | 30.0% |
CAATTTGATGAATGGTTCAA+TGG | - | chr2_1:5188906-5188925 | None:intergenic | 30.0% | |
CATTGAACCATTCATCAAAT+TGG | + | chr2_1:5188904-5188923 | Msa0189740:CDS | 30.0% | |
TTAAGGAAACAGTTCATGTT+TGG | - | chr2_1:5188995-5189014 | None:intergenic | 30.0% | |
AAATCATAGAAAACCCAATC+AGG | - | chr2_1:5189073-5189092 | None:intergenic | 30.0% | |
! | GTTTTCTATGATTTTGCAAG+TGG | + | chr2_1:5189079-5189098 | Msa0189740:CDS | 30.0% |
!!! | TTTGTTTTGACTTGATCCTT+AGG | - | chr2_1:5189193-5189212 | None:intergenic | 30.0% |
AGATGAATGGTTGTTTGAAA+AGG | - | chr2_1:5189263-5189282 | None:intergenic | 30.0% | |
TCAGAATGATTTAACTGAGT+TGG | + | chr2_1:5189609-5189628 | Msa0189740:intron | 30.0% | |
! | GTTATTGAGAAGGTTCATTT+TGG | + | chr2_1:5189829-5189848 | Msa0189740:CDS | 30.0% |
AAACATTGGTCAAGCAAATA+AGG | - | chr2_1:5189874-5189893 | None:intergenic | 30.0% | |
!! | TTGACCAATGTTTGTTTTCA+AGG | + | chr2_1:5189881-5189900 | Msa0189740:CDS | 30.0% |
!! | TGACCAATGTTTGTTTTCAA+GGG | + | chr2_1:5189882-5189901 | Msa0189740:CDS | 30.0% |
TTGATGCTCTTTACAAGTAT+AGG | + | chr2_1:5190100-5190119 | Msa0189740:CDS | 30.0% | |
TTCATATTGTAATGCTCCCA+TGG | + | chr2_1:5188759-5188778 | Msa0189740:CDS | 35.0% | |
!! | AGCCAAAATTCTAGCTTCAA+AGG | + | chr2_1:5188817-5188836 | Msa0189740:CDS | 35.0% |
!! | GCCAAAATTCTAGCTTCAAA+GGG | + | chr2_1:5188818-5188837 | Msa0189740:CDS | 35.0% |
!!! | ACCCTTTGAAGCTAGAATTT+TGG | - | chr2_1:5188822-5188841 | None:intergenic | 35.0% |
!!! | CATTAGGTCAATGTTTTTGG+GGG | - | chr2_1:5188867-5188886 | None:intergenic | 35.0% |
!! | GCATTAGGTCAATGTTTTTG+GGG | - | chr2_1:5188868-5188887 | None:intergenic | 35.0% |
! | GGCATTAGGTCAATGTTTTT+GGG | - | chr2_1:5188869-5188888 | None:intergenic | 35.0% |
!!! | TCAATGGTTTTGGGTGTTTT+GGG | - | chr2_1:5188890-5188909 | None:intergenic | 35.0% |
!!! | TTCAATGGTTTTGGGTGTTT+TGG | - | chr2_1:5188891-5188910 | None:intergenic | 35.0% |
! | GATGAATGGTTCAATGGTTT+TGG | - | chr2_1:5188900-5188919 | None:intergenic | 35.0% |
! | TTCCTTAAACTAGCCTATGA+AGG | + | chr2_1:5189007-5189026 | Msa0189740:CDS | 35.0% |
! | TCAAAGCATCAAAACCTGAT+TGG | + | chr2_1:5189056-5189075 | Msa0189740:CDS | 35.0% |
! | CAAAGCATCAAAACCTGATT+GGG | + | chr2_1:5189057-5189076 | Msa0189740:CDS | 35.0% |
! | TCTATGATTTTGCAAGTGGT+TGG | + | chr2_1:5189083-5189102 | Msa0189740:CDS | 35.0% |
ATTACAACATAACACCAGCT+TGG | + | chr2_1:5189146-5189165 | Msa0189740:intron | 35.0% | |
AAGAAACATTTGTTCCAAGC+TGG | - | chr2_1:5189163-5189182 | None:intergenic | 35.0% | |
ATGTTTCTTTGATCCACCTA+AGG | + | chr2_1:5189174-5189193 | Msa0189740:intron | 35.0% | |
TTCAAACTTGAAGACATGTG+TGG | + | chr2_1:5189221-5189240 | Msa0189740:CDS | 35.0% | |
! | GTTTGAAAAGGAACCCATTT+TGG | - | chr2_1:5189251-5189270 | None:intergenic | 35.0% |
! | CTCATAAGGTTTGAGATGAA+TGG | - | chr2_1:5189276-5189295 | None:intergenic | 35.0% |
ACAGCTCTTAGAAATGAATC+AGG | + | chr2_1:5189311-5189330 | Msa0189740:CDS | 35.0% | |
!! | AGCTTTGTTGAGATCAAAAC+CGG | - | chr2_1:5189345-5189364 | None:intergenic | 35.0% |
TCATCTCTTATCTGCATAGA+TGG | - | chr2_1:5189482-5189501 | None:intergenic | 35.0% | |
TCATCTTCCGTTGTTTACAT+TGG | + | chr2_1:5189562-5189581 | Msa0189740:CDS | 35.0% | |
TCCGTTGTTTACATTGGATT+TGG | + | chr2_1:5189568-5189587 | Msa0189740:CDS | 35.0% | |
CCCAAATCCAATGTAAACAA+CGG | - | chr2_1:5189572-5189591 | None:intergenic | 35.0% | |
CCGTTGTTTACATTGGATTT+GGG | + | chr2_1:5189569-5189588 | Msa0189740:CDS | 35.0% | |
! | TTTCTGGGTTGTCTTTCTTT+TGG | + | chr2_1:5189647-5189666 | Msa0189740:intron | 35.0% |
! | TTCTGGGTTGTCTTTCTTTT+GGG | + | chr2_1:5189648-5189667 | Msa0189740:intron | 35.0% |
!! | GCTTTGAAGAATCTGAAAGA+GGG | + | chr2_1:5189670-5189689 | Msa0189740:intron | 35.0% |
TGAATTACCTGAAGGATTTG+AGG | + | chr2_1:5189699-5189718 | Msa0189740:CDS | 35.0% | |
CGGAATTGTTTGGAAAACAT+GGG | + | chr2_1:5189738-5189757 | Msa0189740:CDS | 35.0% | |
!! | TTCTGGTTCTGTTATTGAGA+AGG | + | chr2_1:5189819-5189838 | Msa0189740:CDS | 35.0% |
ATGCCCTTGAAAACAAACAT+TGG | - | chr2_1:5189888-5189907 | None:intergenic | 35.0% | |
!! | ATGTTTGTTTTCAAGGGCAT+TGG | + | chr2_1:5189888-5189907 | Msa0189740:CDS | 35.0% |
AGGAACAATGCTAAAGAGTT+GGG | + | chr2_1:5190027-5190046 | Msa0189740:CDS | 35.0% | |
TTCATATTGTAATGCTCCCA+TGG | + | chr2_1:5188759-5188778 | Msa0189740:CDS | 35.0% | |
!! | AGCCAAAATTCTAGCTTCAA+AGG | + | chr2_1:5188817-5188836 | Msa0189740:CDS | 35.0% |
!! | GCCAAAATTCTAGCTTCAAA+GGG | + | chr2_1:5188818-5188837 | Msa0189740:CDS | 35.0% |
!!! | ACCCTTTGAAGCTAGAATTT+TGG | - | chr2_1:5188822-5188841 | None:intergenic | 35.0% |
!!! | CATTAGGTCAATGTTTTTGG+GGG | - | chr2_1:5188867-5188886 | None:intergenic | 35.0% |
!! | GCATTAGGTCAATGTTTTTG+GGG | - | chr2_1:5188868-5188887 | None:intergenic | 35.0% |
! | GGCATTAGGTCAATGTTTTT+GGG | - | chr2_1:5188869-5188888 | None:intergenic | 35.0% |
!!! | TCAATGGTTTTGGGTGTTTT+GGG | - | chr2_1:5188890-5188909 | None:intergenic | 35.0% |
!!! | TTCAATGGTTTTGGGTGTTT+TGG | - | chr2_1:5188891-5188910 | None:intergenic | 35.0% |
! | GATGAATGGTTCAATGGTTT+TGG | - | chr2_1:5188900-5188919 | None:intergenic | 35.0% |
! | TTCCTTAAACTAGCCTATGA+AGG | + | chr2_1:5189007-5189026 | Msa0189740:CDS | 35.0% |
! | TCAAAGCATCAAAACCTGAT+TGG | + | chr2_1:5189056-5189075 | Msa0189740:CDS | 35.0% |
! | CAAAGCATCAAAACCTGATT+GGG | + | chr2_1:5189057-5189076 | Msa0189740:CDS | 35.0% |
! | TCTATGATTTTGCAAGTGGT+TGG | + | chr2_1:5189083-5189102 | Msa0189740:CDS | 35.0% |
ATTACAACATAACACCAGCT+TGG | + | chr2_1:5189146-5189165 | Msa0189740:intron | 35.0% | |
AAGAAACATTTGTTCCAAGC+TGG | - | chr2_1:5189163-5189182 | None:intergenic | 35.0% | |
ATGTTTCTTTGATCCACCTA+AGG | + | chr2_1:5189174-5189193 | Msa0189740:intron | 35.0% | |
TTCAAACTTGAAGACATGTG+TGG | + | chr2_1:5189221-5189240 | Msa0189740:CDS | 35.0% | |
! | GTTTGAAAAGGAACCCATTT+TGG | - | chr2_1:5189251-5189270 | None:intergenic | 35.0% |
! | CTCATAAGGTTTGAGATGAA+TGG | - | chr2_1:5189276-5189295 | None:intergenic | 35.0% |
ACAGCTCTTAGAAATGAATC+AGG | + | chr2_1:5189311-5189330 | Msa0189740:CDS | 35.0% | |
!! | AGCTTTGTTGAGATCAAAAC+CGG | - | chr2_1:5189345-5189364 | None:intergenic | 35.0% |
TCATCTCTTATCTGCATAGA+TGG | - | chr2_1:5189482-5189501 | None:intergenic | 35.0% | |
TCATCTTCCGTTGTTTACAT+TGG | + | chr2_1:5189562-5189581 | Msa0189740:CDS | 35.0% | |
TCCGTTGTTTACATTGGATT+TGG | + | chr2_1:5189568-5189587 | Msa0189740:CDS | 35.0% | |
CCCAAATCCAATGTAAACAA+CGG | - | chr2_1:5189572-5189591 | None:intergenic | 35.0% | |
CCGTTGTTTACATTGGATTT+GGG | + | chr2_1:5189569-5189588 | Msa0189740:CDS | 35.0% | |
! | TTTCTGGGTTGTCTTTCTTT+TGG | + | chr2_1:5189647-5189666 | Msa0189740:intron | 35.0% |
! | TTCTGGGTTGTCTTTCTTTT+GGG | + | chr2_1:5189648-5189667 | Msa0189740:intron | 35.0% |
!! | GCTTTGAAGAATCTGAAAGA+GGG | + | chr2_1:5189670-5189689 | Msa0189740:intron | 35.0% |
TGAATTACCTGAAGGATTTG+AGG | + | chr2_1:5189699-5189718 | Msa0189740:CDS | 35.0% | |
CGGAATTGTTTGGAAAACAT+GGG | + | chr2_1:5189738-5189757 | Msa0189740:CDS | 35.0% | |
!! | TTCTGGTTCTGTTATTGAGA+AGG | + | chr2_1:5189819-5189838 | Msa0189740:CDS | 35.0% |
ATGCCCTTGAAAACAAACAT+TGG | - | chr2_1:5189888-5189907 | None:intergenic | 35.0% | |
!! | ATGTTTGTTTTCAAGGGCAT+TGG | + | chr2_1:5189888-5189907 | Msa0189740:CDS | 35.0% |
AGGAACAATGCTAAAGAGTT+GGG | + | chr2_1:5190027-5190046 | Msa0189740:CDS | 35.0% | |
! | GGGCATTAGGTCAATGTTTT+TGG | - | chr2_1:5188870-5188889 | None:intergenic | 40.0% |
!! | TTTTGGGTGTTTTGGGCATT+AGG | - | chr2_1:5188883-5188902 | None:intergenic | 40.0% |
AGTTGCTCTATGTGTGGTAA+AGG | - | chr2_1:5188938-5188957 | None:intergenic | 40.0% | |
! | TTGTATTTTCTGCACCTGGT+GGG | - | chr2_1:5188961-5188980 | None:intergenic | 40.0% |
! | ATTGTATTTTCTGCACCTGG+TGG | - | chr2_1:5188962-5188981 | None:intergenic | 40.0% |
ACCAGGTGCAGAAAATACAA+TGG | + | chr2_1:5188961-5188980 | Msa0189740:CDS | 40.0% | |
! | TCCATTGTATTTTCTGCACC+TGG | - | chr2_1:5188965-5188984 | None:intergenic | 40.0% |
AGGAAACAGTTCATGTTTGG+TGG | - | chr2_1:5188992-5189011 | None:intergenic | 40.0% | |
!! | GACCTTCATAGGCTAGTTTA+AGG | - | chr2_1:5189012-5189031 | None:intergenic | 40.0% |
ATCATCTTCGAGACCTTCAT+AGG | - | chr2_1:5189023-5189042 | None:intergenic | 40.0% | |
!! | ATGTTGAGGCTTTTGGCTAT+TGG | - | chr2_1:5189115-5189134 | None:intergenic | 40.0% |
!!! | GTTTTGACTTGATCCTTAGG+TGG | - | chr2_1:5189190-5189209 | None:intergenic | 40.0% |
!! | GAAAAGGAACCCATTTTGGT+GGG | - | chr2_1:5189247-5189266 | None:intergenic | 40.0% |
! | TGAAAAGGAACCCATTTTGG+TGG | - | chr2_1:5189248-5189267 | None:intergenic | 40.0% |
GCTCTTAGAAATGAATCAGG+TGG | + | chr2_1:5189314-5189333 | Msa0189740:CDS | 40.0% | |
AATGAATCAGGTGGAATAGC+CGG | + | chr2_1:5189323-5189342 | Msa0189740:CDS | 40.0% | |
AGAACATCAAGAGAGCTTGA+AGG | + | chr2_1:5189392-5189411 | Msa0189740:CDS | 40.0% | |
AAGATTCCTGTTGTTCCTGT+TGG | + | chr2_1:5189446-5189465 | Msa0189740:CDS | 40.0% | |
AGATTCCTGTTGTTCCTGTT+GGG | + | chr2_1:5189447-5189466 | Msa0189740:CDS | 40.0% | |
TCTCTTATCTGCATAGATGG+TGG | - | chr2_1:5189479-5189498 | None:intergenic | 40.0% | |
GCAGATAAGAGATGATGAAG+AGG | + | chr2_1:5189487-5189506 | Msa0189740:CDS | 40.0% | |
AGGAAGAGAACAATCCTGAT+TGG | + | chr2_1:5189507-5189526 | Msa0189740:CDS | 40.0% | |
GGAAGAGAACAATCCTGATT+GGG | + | chr2_1:5189508-5189527 | Msa0189740:CDS | 40.0% | |
GAAGAGAACAATCCTGATTG+GGG | + | chr2_1:5189509-5189528 | Msa0189740:CDS | 40.0% | |
TCCTGATTGGGGAAAATCAA+AGG | + | chr2_1:5189520-5189539 | Msa0189740:CDS | 40.0% | |
CCTGATTGGGGAAAATCAAA+GGG | + | chr2_1:5189521-5189540 | Msa0189740:CDS | 40.0% | |
! | GATTTAACTGAGTTGGCTCA+TGG | + | chr2_1:5189616-5189635 | Msa0189740:intron | 40.0% |
CTCATGGAATTGAGCTTTCT+GGG | + | chr2_1:5189632-5189651 | Msa0189740:intron | 40.0% | |
!! | GGCTTTGAAGAATCTGAAAG+AGG | + | chr2_1:5189669-5189688 | Msa0189740:intron | 40.0% |
GGTACACTTGAATTACCTGA+AGG | + | chr2_1:5189691-5189710 | Msa0189740:CDS | 40.0% | |
GTTCTTTCCTCAAATCCTTC+AGG | - | chr2_1:5189709-5189728 | None:intergenic | 40.0% | |
GAGGAAAGAACGAAAAAACG+CGG | + | chr2_1:5189718-5189737 | Msa0189740:CDS | 40.0% | |
CGAAAAAACGCGGAATTGTT+TGG | + | chr2_1:5189728-5189747 | Msa0189740:CDS | 40.0% | |
GCGGAATTGTTTGGAAAACA+TGG | + | chr2_1:5189737-5189756 | Msa0189740:CDS | 40.0% | |
TGAGCTAAGATCTTAAGCTG+AGG | - | chr2_1:5189766-5189785 | None:intergenic | 40.0% | |
CAGCTTAAGATCTTAGCTCA+TGG | + | chr2_1:5189766-5189785 | Msa0189740:CDS | 40.0% | |
ATCTTAGCTCATGGAGCAAT+TGG | + | chr2_1:5189775-5189794 | Msa0189740:CDS | 40.0% | |
TGTATGAGTCATTGTGGTTC+TGG | + | chr2_1:5189802-5189821 | Msa0189740:CDS | 40.0% | |
!!! | TTTGTTTTCAAGGGCATTGG+TGG | + | chr2_1:5189891-5189910 | Msa0189740:CDS | 40.0% |
! | AGGAAGATGGGTCTTTTACT+AGG | + | chr2_1:5189947-5189966 | Msa0189740:CDS | 40.0% |
! | GGAAGATGGGTCTTTTACTA+GGG | + | chr2_1:5189948-5189967 | Msa0189740:CDS | 40.0% |
!! | ATGAGGAAGGAAGTACTTTC+AGG | + | chr2_1:5190007-5190026 | Msa0189740:CDS | 40.0% |
CAGGAACAATGCTAAAGAGT+TGG | + | chr2_1:5190026-5190045 | Msa0189740:CDS | 40.0% | |
GGAACAATGCTAAAGAGTTG+GGG | + | chr2_1:5190028-5190047 | Msa0189740:CDS | 40.0% | |
! | GGGCATTAGGTCAATGTTTT+TGG | - | chr2_1:5188870-5188889 | None:intergenic | 40.0% |
!! | TTTTGGGTGTTTTGGGCATT+AGG | - | chr2_1:5188883-5188902 | None:intergenic | 40.0% |
AGTTGCTCTATGTGTGGTAA+AGG | - | chr2_1:5188938-5188957 | None:intergenic | 40.0% | |
! | TTGTATTTTCTGCACCTGGT+GGG | - | chr2_1:5188961-5188980 | None:intergenic | 40.0% |
! | ATTGTATTTTCTGCACCTGG+TGG | - | chr2_1:5188962-5188981 | None:intergenic | 40.0% |
ACCAGGTGCAGAAAATACAA+TGG | + | chr2_1:5188961-5188980 | Msa0189740:CDS | 40.0% | |
! | TCCATTGTATTTTCTGCACC+TGG | - | chr2_1:5188965-5188984 | None:intergenic | 40.0% |
AGGAAACAGTTCATGTTTGG+TGG | - | chr2_1:5188992-5189011 | None:intergenic | 40.0% | |
!! | GACCTTCATAGGCTAGTTTA+AGG | - | chr2_1:5189012-5189031 | None:intergenic | 40.0% |
ATCATCTTCGAGACCTTCAT+AGG | - | chr2_1:5189023-5189042 | None:intergenic | 40.0% | |
!! | ATGTTGAGGCTTTTGGCTAT+TGG | - | chr2_1:5189115-5189134 | None:intergenic | 40.0% |
!!! | GTTTTGACTTGATCCTTAGG+TGG | - | chr2_1:5189190-5189209 | None:intergenic | 40.0% |
!! | GAAAAGGAACCCATTTTGGT+GGG | - | chr2_1:5189247-5189266 | None:intergenic | 40.0% |
! | TGAAAAGGAACCCATTTTGG+TGG | - | chr2_1:5189248-5189267 | None:intergenic | 40.0% |
GCTCTTAGAAATGAATCAGG+TGG | + | chr2_1:5189314-5189333 | Msa0189740:CDS | 40.0% | |
AATGAATCAGGTGGAATAGC+CGG | + | chr2_1:5189323-5189342 | Msa0189740:CDS | 40.0% | |
AGAACATCAAGAGAGCTTGA+AGG | + | chr2_1:5189392-5189411 | Msa0189740:CDS | 40.0% | |
AAGATTCCTGTTGTTCCTGT+TGG | + | chr2_1:5189446-5189465 | Msa0189740:CDS | 40.0% | |
AGATTCCTGTTGTTCCTGTT+GGG | + | chr2_1:5189447-5189466 | Msa0189740:CDS | 40.0% | |
TCTCTTATCTGCATAGATGG+TGG | - | chr2_1:5189479-5189498 | None:intergenic | 40.0% | |
GCAGATAAGAGATGATGAAG+AGG | + | chr2_1:5189487-5189506 | Msa0189740:CDS | 40.0% | |
AGGAAGAGAACAATCCTGAT+TGG | + | chr2_1:5189507-5189526 | Msa0189740:CDS | 40.0% | |
GGAAGAGAACAATCCTGATT+GGG | + | chr2_1:5189508-5189527 | Msa0189740:CDS | 40.0% | |
GAAGAGAACAATCCTGATTG+GGG | + | chr2_1:5189509-5189528 | Msa0189740:CDS | 40.0% | |
TCCTGATTGGGGAAAATCAA+AGG | + | chr2_1:5189520-5189539 | Msa0189740:CDS | 40.0% | |
CCTGATTGGGGAAAATCAAA+GGG | + | chr2_1:5189521-5189540 | Msa0189740:CDS | 40.0% | |
! | GATTTAACTGAGTTGGCTCA+TGG | + | chr2_1:5189616-5189635 | Msa0189740:intron | 40.0% |
CTCATGGAATTGAGCTTTCT+GGG | + | chr2_1:5189632-5189651 | Msa0189740:intron | 40.0% | |
!! | GGCTTTGAAGAATCTGAAAG+AGG | + | chr2_1:5189669-5189688 | Msa0189740:intron | 40.0% |
GGTACACTTGAATTACCTGA+AGG | + | chr2_1:5189691-5189710 | Msa0189740:CDS | 40.0% | |
GTTCTTTCCTCAAATCCTTC+AGG | - | chr2_1:5189709-5189728 | None:intergenic | 40.0% | |
GAGGAAAGAACGAAAAAACG+CGG | + | chr2_1:5189718-5189737 | Msa0189740:CDS | 40.0% | |
CGAAAAAACGCGGAATTGTT+TGG | + | chr2_1:5189728-5189747 | Msa0189740:CDS | 40.0% | |
GCGGAATTGTTTGGAAAACA+TGG | + | chr2_1:5189737-5189756 | Msa0189740:CDS | 40.0% | |
TGAGCTAAGATCTTAAGCTG+AGG | - | chr2_1:5189766-5189785 | None:intergenic | 40.0% | |
CAGCTTAAGATCTTAGCTCA+TGG | + | chr2_1:5189766-5189785 | Msa0189740:CDS | 40.0% | |
ATCTTAGCTCATGGAGCAAT+TGG | + | chr2_1:5189775-5189794 | Msa0189740:CDS | 40.0% | |
TGTATGAGTCATTGTGGTTC+TGG | + | chr2_1:5189802-5189821 | Msa0189740:CDS | 40.0% | |
!!! | TTTGTTTTCAAGGGCATTGG+TGG | + | chr2_1:5189891-5189910 | Msa0189740:CDS | 40.0% |
! | AGGAAGATGGGTCTTTTACT+AGG | + | chr2_1:5189947-5189966 | Msa0189740:CDS | 40.0% |
! | GGAAGATGGGTCTTTTACTA+GGG | + | chr2_1:5189948-5189967 | Msa0189740:CDS | 40.0% |
!! | ATGAGGAAGGAAGTACTTTC+AGG | + | chr2_1:5190007-5190026 | Msa0189740:CDS | 40.0% |
CAGGAACAATGCTAAAGAGT+TGG | + | chr2_1:5190026-5190045 | Msa0189740:CDS | 40.0% | |
GGAACAATGCTAAAGAGTTG+GGG | + | chr2_1:5190028-5190047 | Msa0189740:CDS | 40.0% | |
!!! | GTTTTTGGGGGAGTTGATGA+AGG | - | chr2_1:5188855-5188874 | None:intergenic | 45.0% |
! | AGCAGCTATGTTGAGGCTTT+TGG | - | chr2_1:5189122-5189141 | None:intergenic | 45.0% |
AATGAGCAGCAGCTATGTTG+AGG | - | chr2_1:5189129-5189148 | None:intergenic | 45.0% | |
CAAGAGAGCTTGAAGGTGAA+TGG | + | chr2_1:5189399-5189418 | Msa0189740:CDS | 45.0% | |
AGAGCTTGAAGGTGAATGGT+TGG | + | chr2_1:5189403-5189422 | Msa0189740:CDS | 45.0% | |
!! | CCCTTTGATTTTCCCCAATC+AGG | - | chr2_1:5189524-5189543 | None:intergenic | 45.0% |
GATTGGGGAAAATCAAAGGG+TGG | + | chr2_1:5189524-5189543 | Msa0189740:CDS | 45.0% | |
GCTCATGGAATTGAGCTTTC+TGG | + | chr2_1:5189631-5189650 | Msa0189740:intron | 45.0% | |
TTAGCTCATGGAGCAATTGG+TGG | + | chr2_1:5189778-5189797 | Msa0189740:CDS | 45.0% | |
GGTGGATGTATGAGTCATTG+TGG | + | chr2_1:5189796-5189815 | Msa0189740:CDS | 45.0% | |
!! | TTCAAGGGCATTGGTGGAAA+AGG | + | chr2_1:5189897-5189916 | Msa0189740:CDS | 45.0% |
TACCAAGGAGTGAGGAAGAT+GGG | + | chr2_1:5189935-5189954 | Msa0189740:CDS | 45.0% | |
! | GTCTTTTACTAGGGACTCAG+TGG | + | chr2_1:5189957-5189976 | Msa0189740:CDS | 45.0% |
CTCATTGAGGTTGGCAATTG+TGG | + | chr2_1:5189984-5190003 | Msa0189740:CDS | 45.0% | |
TTGGCAATTGTGGATGAGGA+AGG | + | chr2_1:5189994-5190013 | Msa0189740:CDS | 45.0% | |
CAATGCTAAAGAGTTGGGGA+AGG | + | chr2_1:5190032-5190051 | Msa0189740:CDS | 45.0% | |
!!! | GTTTTTGGGGGAGTTGATGA+AGG | - | chr2_1:5188855-5188874 | None:intergenic | 45.0% |
! | AGCAGCTATGTTGAGGCTTT+TGG | - | chr2_1:5189122-5189141 | None:intergenic | 45.0% |
AATGAGCAGCAGCTATGTTG+AGG | - | chr2_1:5189129-5189148 | None:intergenic | 45.0% | |
CAAGAGAGCTTGAAGGTGAA+TGG | + | chr2_1:5189399-5189418 | Msa0189740:CDS | 45.0% | |
AGAGCTTGAAGGTGAATGGT+TGG | + | chr2_1:5189403-5189422 | Msa0189740:CDS | 45.0% | |
!! | CCCTTTGATTTTCCCCAATC+AGG | - | chr2_1:5189524-5189543 | None:intergenic | 45.0% |
GATTGGGGAAAATCAAAGGG+TGG | + | chr2_1:5189524-5189543 | Msa0189740:CDS | 45.0% | |
GCTCATGGAATTGAGCTTTC+TGG | + | chr2_1:5189631-5189650 | Msa0189740:intron | 45.0% | |
TTAGCTCATGGAGCAATTGG+TGG | + | chr2_1:5189778-5189797 | Msa0189740:CDS | 45.0% | |
GGTGGATGTATGAGTCATTG+TGG | + | chr2_1:5189796-5189815 | Msa0189740:CDS | 45.0% | |
!! | TTCAAGGGCATTGGTGGAAA+AGG | + | chr2_1:5189897-5189916 | Msa0189740:CDS | 45.0% |
TACCAAGGAGTGAGGAAGAT+GGG | + | chr2_1:5189935-5189954 | Msa0189740:CDS | 45.0% | |
! | GTCTTTTACTAGGGACTCAG+TGG | + | chr2_1:5189957-5189976 | Msa0189740:CDS | 45.0% |
CTCATTGAGGTTGGCAATTG+TGG | + | chr2_1:5189984-5190003 | Msa0189740:CDS | 45.0% | |
TTGGCAATTGTGGATGAGGA+AGG | + | chr2_1:5189994-5190013 | Msa0189740:CDS | 45.0% | |
CAATGCTAAAGAGTTGGGGA+AGG | + | chr2_1:5190032-5190051 | Msa0189740:CDS | 45.0% | |
! | AATGCTCCCATGGCTAGCTA+TGG | + | chr2_1:5188769-5188788 | Msa0189740:CDS | 50.0% |
! | ATGCTCCCATGGCTAGCTAT+GGG | + | chr2_1:5188770-5188789 | Msa0189740:CDS | 50.0% |
TGTGTCCCATAGCTAGCCAT+GGG | - | chr2_1:5188778-5188797 | None:intergenic | 50.0% | |
ATGTGTCCCATAGCTAGCCA+TGG | - | chr2_1:5188779-5188798 | None:intergenic | 50.0% | |
ACATGTGTGGCCCACCAAAA+TGG | + | chr2_1:5189234-5189253 | Msa0189740:CDS | 50.0% | |
CATGTGTGGCCCACCAAAAT+GGG | + | chr2_1:5189235-5189254 | Msa0189740:CDS | 50.0% | |
AGCAACCCAACAGGAACAAC+AGG | - | chr2_1:5189455-5189474 | None:intergenic | 50.0% | |
GGGGAAAATCAAAGGGTGGT+TGG | + | chr2_1:5189528-5189547 | Msa0189740:CDS | 50.0% | |
!! | GGCATTGGTGGAAAAGGAAG+TGG | + | chr2_1:5189903-5189922 | Msa0189740:CDS | 50.0% |
GGAAAAGGAAGTGGCTGTTG+AGG | + | chr2_1:5189912-5189931 | Msa0189740:CDS | 50.0% | |
! | AAGTGGCTGTTGAGGTACCA+AGG | + | chr2_1:5189920-5189939 | Msa0189740:CDS | 50.0% |
! | TGTTGAGGTACCAAGGAGTG+AGG | + | chr2_1:5189927-5189946 | Msa0189740:CDS | 50.0% |
GTACCAAGGAGTGAGGAAGA+TGG | + | chr2_1:5189934-5189953 | Msa0189740:CDS | 50.0% | |
ACTCAGTGGCTCACTCATTG+AGG | + | chr2_1:5189971-5189990 | Msa0189740:CDS | 50.0% | |
AGTGGCTCACTCATTGAGGT+TGG | + | chr2_1:5189975-5189994 | Msa0189740:CDS | 50.0% | |
GAGGTTGGCAATTGTGGATG+AGG | + | chr2_1:5189990-5190009 | Msa0189740:CDS | 50.0% | |
! | AATGCTCCCATGGCTAGCTA+TGG | + | chr2_1:5188769-5188788 | Msa0189740:CDS | 50.0% |
! | ATGCTCCCATGGCTAGCTAT+GGG | + | chr2_1:5188770-5188789 | Msa0189740:CDS | 50.0% |
TGTGTCCCATAGCTAGCCAT+GGG | - | chr2_1:5188778-5188797 | None:intergenic | 50.0% | |
ATGTGTCCCATAGCTAGCCA+TGG | - | chr2_1:5188779-5188798 | None:intergenic | 50.0% | |
ACATGTGTGGCCCACCAAAA+TGG | + | chr2_1:5189234-5189253 | Msa0189740:CDS | 50.0% | |
CATGTGTGGCCCACCAAAAT+GGG | + | chr2_1:5189235-5189254 | Msa0189740:CDS | 50.0% | |
AGCAACCCAACAGGAACAAC+AGG | - | chr2_1:5189455-5189474 | None:intergenic | 50.0% | |
GGGGAAAATCAAAGGGTGGT+TGG | + | chr2_1:5189528-5189547 | Msa0189740:CDS | 50.0% | |
!! | GGCATTGGTGGAAAAGGAAG+TGG | + | chr2_1:5189903-5189922 | Msa0189740:CDS | 50.0% |
GGAAAAGGAAGTGGCTGTTG+AGG | + | chr2_1:5189912-5189931 | Msa0189740:CDS | 50.0% | |
! | AAGTGGCTGTTGAGGTACCA+AGG | + | chr2_1:5189920-5189939 | Msa0189740:CDS | 50.0% |
! | TGTTGAGGTACCAAGGAGTG+AGG | + | chr2_1:5189927-5189946 | Msa0189740:CDS | 50.0% |
GTACCAAGGAGTGAGGAAGA+TGG | + | chr2_1:5189934-5189953 | Msa0189740:CDS | 50.0% | |
ACTCAGTGGCTCACTCATTG+AGG | + | chr2_1:5189971-5189990 | Msa0189740:CDS | 50.0% | |
AGTGGCTCACTCATTGAGGT+TGG | + | chr2_1:5189975-5189994 | Msa0189740:CDS | 50.0% | |
GAGGTTGGCAATTGTGGATG+AGG | + | chr2_1:5189990-5190009 | Msa0189740:CDS | 50.0% | |
GGTGGGAGTTGCTCTATGTG+TGG | - | chr2_1:5188944-5188963 | None:intergenic | 55.0% | |
CACATAGAGCAACTCCCACC+AGG | + | chr2_1:5188944-5188963 | Msa0189740:CDS | 55.0% | |
!! | GATGGTGGAAGCAACCCAAC+AGG | - | chr2_1:5189464-5189483 | None:intergenic | 55.0% |
GACCCATCTTCCTCACTCCT+TGG | - | chr2_1:5189940-5189959 | None:intergenic | 55.0% | |
GGTGGGAGTTGCTCTATGTG+TGG | - | chr2_1:5188944-5188963 | None:intergenic | 55.0% | |
CACATAGAGCAACTCCCACC+AGG | + | chr2_1:5188944-5188963 | Msa0189740:CDS | 55.0% | |
!! | GATGGTGGAAGCAACCCAAC+AGG | - | chr2_1:5189464-5189483 | None:intergenic | 55.0% |
GACCCATCTTCCTCACTCCT+TGG | - | chr2_1:5189940-5189959 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 5188722 | 5190146 | 5188722 | ID=Msa0189740;Name=Msa0189740 |
chr2_1 | mRNA | 5188722 | 5190146 | 5188722 | ID=Msa0189740-mRNA-1;Parent=Msa0189740;Name=Msa0189740-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|415 |
chr2_1 | exon | 5188722 | 5189104 | 5188722 | ID=Msa0189740-mRNA-1:exon:2374;Parent=Msa0189740-mRNA-1 |
chr2_1 | exon | 5189196 | 5189592 | 5189196 | ID=Msa0189740-mRNA-1:exon:2375;Parent=Msa0189740-mRNA-1 |
chr2_1 | exon | 5189679 | 5190146 | 5189679 | ID=Msa0189740-mRNA-1:exon:2376;Parent=Msa0189740-mRNA-1 |
chr2_1 | CDS | 5188722 | 5189104 | 5188722 | ID=Msa0189740-mRNA-1:cds;Parent=Msa0189740-mRNA-1 |
chr2_1 | CDS | 5189196 | 5189592 | 5189196 | ID=Msa0189740-mRNA-1:cds;Parent=Msa0189740-mRNA-1 |
chr2_1 | CDS | 5189679 | 5190146 | 5189679 | ID=Msa0189740-mRNA-1:cds;Parent=Msa0189740-mRNA-1 |
Gene Sequence |
Protein sequence |