Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346830 | XP_003598036.1 | 95.626 | 503 | 10 | 1 | 1 | 491 | 192 | 694 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346830 | sp|Q8VYR4|CSLG2_ARATH | 34.105 | 475 | 278 | 7 | 25 | 484 | 236 | 690 | 2.02e-95 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346830 | G7IYF6 | 95.626 | 503 | 10 | 1 | 1 | 491 | 192 | 694 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189640 | Msa0346830 | 0.834230 | 3.379398e-56 | -8.615850e-47 |
| Msa0189740 | Msa0346830 | 0.833949 | 3.973705e-56 | -8.615850e-47 |
| Msa0232110 | Msa0346830 | 0.842578 | 2.373935e-58 | -8.615850e-47 |
| Msa0310120 | Msa0346830 | 0.840646 | 7.671095e-58 | -8.615850e-47 |
| Msa0346830 | Msa0392330 | 0.891696 | 3.139244e-74 | -8.615850e-47 |
| Msa0346830 | Msa0440280 | 0.949061 | 2.719741e-107 | -8.615850e-47 |
| Msa0346830 | Msa0487660 | 0.884810 | 1.394824e-71 | -8.615850e-47 |
| Msa0346830 | Msa0625500 | 0.805046 | 1.612511e-49 | -8.615850e-47 |
| Msa0346830 | Msa0693810 | 0.815500 | 8.956444e-52 | -8.615850e-47 |
| Msa0346830 | Msa0881320 | 0.875010 | 4.313959e-68 | -8.615850e-47 |
| Msa0346830 | Msa1019670 | 0.870485 | 1.408315e-66 | -8.615850e-47 |
| Msa0346830 | Msa1059440 | 0.840874 | 6.685101e-58 | -8.615850e-47 |
| Msa0346830 | Msa1104400 | 0.877087 | 8.322709e-69 | -8.615850e-47 |
| Msa0346830 | Msa1423320 | 0.869491 | 2.975073e-66 | -8.615850e-47 |
| Msa0346830 | Msa1445580 | 0.880161 | 6.891253e-70 | -8.615850e-47 |
| Msa0346830 | Msa1452400 | 0.842858 | 2.000697e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346830 | MtrunA17_Chr3g0077511 | 95.626 | 503 | 10 | 1 | 1 | 491 | 192 | 694 | 0.0 | 996 |
| Msa0346830 | MtrunA17_Chr3g0095791 | 70.600 | 500 | 133 | 2 | 2 | 489 | 192 | 689 | 0.0 | 756 |
| Msa0346830 | MtrunA17_Chr2g0298581 | 69.721 | 502 | 138 | 2 | 2 | 491 | 193 | 692 | 0.0 | 742 |
| Msa0346830 | MtrunA17_Chr2g0307191 | 67.530 | 502 | 149 | 2 | 2 | 491 | 193 | 692 | 0.0 | 721 |
| Msa0346830 | MtrunA17_Chr1g0186381 | 38.012 | 513 | 284 | 8 | 2 | 489 | 208 | 711 | 1.20e-124 | 380 |
| Msa0346830 | MtrunA17_Chr4g0046401 | 38.943 | 511 | 284 | 6 | 2 | 489 | 207 | 712 | 4.52e-122 | 374 |
| Msa0346830 | MtrunA17_Chr3g0102531 | 33.047 | 466 | 281 | 6 | 39 | 489 | 257 | 706 | 2.66e-84 | 275 |
| Msa0346830 | MtrunA17_Chr3g0102541 | 31.770 | 469 | 286 | 6 | 39 | 489 | 258 | 710 | 3.72e-81 | 266 |
| Msa0346830 | MtrunA17_Chr3g0102551 | 30.621 | 467 | 284 | 9 | 39 | 487 | 268 | 712 | 1.98e-74 | 249 |
| Msa0346830 | MtrunA17_Chr8g0364641 | 30.975 | 523 | 296 | 12 | 25 | 490 | 426 | 940 | 6.09e-73 | 248 |
| Msa0346830 | MtrunA17_Chr4g0073711 | 28.545 | 536 | 303 | 13 | 25 | 490 | 472 | 997 | 6.08e-69 | 238 |
| Msa0346830 | MtrunA17_Chr3g0137951 | 29.511 | 532 | 287 | 16 | 38 | 490 | 523 | 1045 | 9.40e-65 | 226 |
| Msa0346830 | MtrunA17_Chr4g0025201 | 29.006 | 493 | 308 | 13 | 24 | 483 | 227 | 710 | 3.24e-64 | 221 |
| Msa0346830 | MtrunA17_Chr2g0284211 | 27.757 | 526 | 301 | 10 | 35 | 490 | 420 | 936 | 4.04e-64 | 224 |
| Msa0346830 | MtrunA17_Chr8g0379241 | 27.778 | 522 | 303 | 10 | 35 | 490 | 435 | 948 | 1.37e-63 | 223 |
| Msa0346830 | MtrunA17_Chr1g0183381 | 28.814 | 531 | 302 | 13 | 25 | 490 | 344 | 863 | 3.34e-63 | 221 |
| Msa0346830 | MtrunA17_Chr2g0322361 | 29.730 | 444 | 280 | 10 | 25 | 440 | 234 | 673 | 8.72e-60 | 209 |
| Msa0346830 | MtrunA17_Chr2g0322371 | 29.193 | 483 | 316 | 11 | 25 | 483 | 227 | 707 | 2.20e-59 | 208 |
| Msa0346830 | MtrunA17_Chr3g0078671 | 26.978 | 556 | 314 | 15 | 23 | 490 | 457 | 1008 | 1.99e-57 | 205 |
| Msa0346830 | MtrunA17_Chr2g0322351 | 28.660 | 485 | 311 | 11 | 25 | 483 | 229 | 704 | 1.97e-56 | 200 |
| Msa0346830 | MtrunA17_Chr5g0410641 | 25.758 | 528 | 307 | 12 | 38 | 490 | 566 | 1083 | 1.41e-52 | 191 |
| Msa0346830 | MtrunA17_Chr2g0297351 | 26.195 | 523 | 304 | 15 | 38 | 489 | 474 | 985 | 4.54e-52 | 190 |
| Msa0346830 | MtrunA17_Chr4g0039801 | 26.412 | 549 | 305 | 14 | 24 | 490 | 573 | 1104 | 1.43e-50 | 186 |
| Msa0346830 | MtrunA17_Chr1g0165421 | 25.912 | 548 | 302 | 14 | 30 | 490 | 563 | 1093 | 7.28e-48 | 177 |
| Msa0346830 | MtrunA17_Chr1g0165411 | 26.604 | 530 | 307 | 14 | 30 | 490 | 549 | 1065 | 8.47e-48 | 177 |
| Msa0346830 | MtrunA17_Chr2g0307231 | 73.529 | 102 | 27 | 0 | 117 | 218 | 1 | 102 | 7.51e-46 | 155 |
| Msa0346830 | MtrunA17_Chr8g0352231 | 26.586 | 331 | 219 | 7 | 176 | 490 | 715 | 1037 | 4.27e-37 | 145 |
| Msa0346830 | MtrunA17_Chr8g0352231 | 40.523 | 153 | 83 | 1 | 23 | 167 | 490 | 642 | 1.26e-34 | 138 |
| Msa0346830 | MtrunA17_Chr3g0088821 | 26.444 | 329 | 218 | 7 | 178 | 490 | 717 | 1037 | 2.02e-35 | 140 |
| Msa0346830 | MtrunA17_Chr3g0088821 | 45.600 | 125 | 68 | 0 | 38 | 162 | 513 | 637 | 1.01e-33 | 135 |
| Msa0346830 | MtrunA17_Chr8g0383701 | 28.571 | 343 | 218 | 10 | 165 | 489 | 721 | 1054 | 2.41e-35 | 140 |
| Msa0346830 | MtrunA17_Chr8g0383701 | 41.401 | 157 | 83 | 2 | 23 | 170 | 508 | 664 | 5.60e-34 | 136 |
| Msa0346830 | MtrunA17_Chr7g0267731 | 37.288 | 177 | 92 | 2 | 5 | 162 | 373 | 549 | 8.87e-35 | 139 |
| Msa0346830 | MtrunA17_Chr7g0267731 | 25.846 | 325 | 217 | 7 | 181 | 489 | 628 | 944 | 1.10e-33 | 135 |
| Msa0346830 | MtrunA17_Chr1g0201731 | 46.269 | 134 | 71 | 1 | 38 | 170 | 533 | 666 | 3.73e-34 | 137 |
| Msa0346830 | MtrunA17_Chr1g0201731 | 27.928 | 333 | 201 | 9 | 175 | 484 | 734 | 1050 | 2.24e-29 | 122 |
| Msa0346830 | MtrunA17_Chr2g0296991 | 43.750 | 128 | 72 | 0 | 35 | 162 | 461 | 588 | 1.20e-33 | 135 |
| Msa0346830 | MtrunA17_Chr2g0296991 | 26.970 | 330 | 214 | 10 | 178 | 490 | 684 | 1003 | 2.52e-31 | 128 |
| Msa0346830 | MtrunA17_Chr7g0274751 | 29.514 | 288 | 148 | 4 | 24 | 257 | 361 | 647 | 1.57e-33 | 134 |
| Msa0346830 | MtrunA17_Chr7g0269741 | 36.364 | 176 | 99 | 4 | 9 | 183 | 587 | 750 | 1.84e-27 | 117 |
| Msa0346830 | MtrunA17_Chr7g0269741 | 25.329 | 304 | 186 | 9 | 212 | 489 | 843 | 1131 | 9.19e-21 | 96.3 |
| Msa0346830 | MtrunA17_Chr2g0322341 | 44.545 | 110 | 57 | 1 | 25 | 130 | 234 | 343 | 2.69e-26 | 109 |
| Msa0346830 | MtrunA17_Chr2g0322331 | 26.875 | 320 | 212 | 10 | 181 | 483 | 34 | 348 | 6.42e-26 | 108 |
| Msa0346830 | MtrunA17_Chr2g0307221 | 50.794 | 63 | 31 | 0 | 273 | 335 | 1 | 63 | 1.46e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346830 | AT4G24000.2 | 34.105 | 475 | 278 | 7 | 25 | 484 | 44 | 498 | 2.50e-98 | 306 |
| Msa0346830 | AT4G23990.2 | 34.232 | 482 | 275 | 8 | 25 | 484 | 44 | 505 | 2.37e-97 | 304 |
| Msa0346830 | AT4G24000.1 | 34.105 | 475 | 278 | 7 | 25 | 484 | 236 | 690 | 2.06e-96 | 307 |
| Msa0346830 | AT4G23990.1 | 34.232 | 482 | 275 | 8 | 25 | 484 | 258 | 719 | 2.95e-95 | 305 |
| Msa0346830 | AT4G24010.1 | 34.021 | 485 | 278 | 9 | 25 | 487 | 239 | 703 | 2.93e-94 | 302 |
| Msa0346830 | AT1G55850.1 | 32.766 | 470 | 266 | 8 | 39 | 489 | 266 | 704 | 1.11e-75 | 252 |
| Msa0346830 | AT5G17420.1 | 28.902 | 519 | 296 | 13 | 35 | 490 | 477 | 985 | 1.21e-72 | 249 |
| Msa0346830 | AT4G18780.1 | 28.544 | 529 | 296 | 10 | 35 | 490 | 423 | 942 | 4.94e-66 | 230 |
| Msa0346830 | AT2G21770.1 | 28.679 | 530 | 292 | 14 | 38 | 489 | 524 | 1045 | 6.28e-65 | 227 |
| Msa0346830 | AT5G64740.1 | 28.649 | 555 | 301 | 14 | 23 | 489 | 495 | 1042 | 7.14e-65 | 227 |
| Msa0346830 | AT2G25540.1 | 26.362 | 569 | 323 | 12 | 6 | 490 | 463 | 1019 | 8.46e-65 | 227 |
| Msa0346830 | AT2G32530.1 | 29.762 | 504 | 288 | 16 | 2 | 448 | 196 | 690 | 3.42e-56 | 200 |
| Msa0346830 | AT4G15290.1 | 28.976 | 459 | 278 | 12 | 33 | 453 | 245 | 693 | 2.38e-54 | 195 |
| Msa0346830 | AT4G15320.5 | 29.783 | 460 | 274 | 12 | 33 | 453 | 245 | 694 | 5.23e-54 | 194 |
| Msa0346830 | AT4G15320.3 | 29.783 | 460 | 274 | 12 | 33 | 453 | 245 | 694 | 6.38e-54 | 194 |
| Msa0346830 | AT4G15320.4 | 29.783 | 460 | 274 | 12 | 33 | 453 | 260 | 709 | 6.70e-54 | 194 |
| Msa0346830 | AT2G32540.1 | 29.978 | 457 | 272 | 12 | 33 | 450 | 245 | 692 | 7.55e-54 | 193 |
| Msa0346830 | AT5G16910.1 | 26.852 | 540 | 299 | 13 | 30 | 490 | 585 | 1107 | 1.04e-52 | 192 |
| Msa0346830 | AT2G32620.4 | 30.388 | 464 | 266 | 14 | 33 | 452 | 149 | 599 | 7.50e-52 | 186 |
| Msa0346830 | AT2G32620.1 | 30.197 | 457 | 265 | 13 | 33 | 448 | 245 | 688 | 3.77e-51 | 186 |
| Msa0346830 | AT3G03050.1 | 26.287 | 544 | 300 | 13 | 30 | 490 | 582 | 1107 | 8.45e-51 | 187 |
| Msa0346830 | AT2G32610.1 | 28.088 | 502 | 286 | 13 | 2 | 442 | 197 | 684 | 1.50e-50 | 184 |
| Msa0346830 | AT4G38190.1 | 26.046 | 526 | 307 | 12 | 30 | 490 | 560 | 1068 | 4.76e-50 | 184 |
| Msa0346830 | AT1G02730.1 | 24.638 | 552 | 318 | 12 | 24 | 489 | 604 | 1143 | 2.85e-48 | 179 |
| Msa0346830 | AT2G33100.2 | 24.764 | 529 | 311 | 12 | 38 | 489 | 481 | 999 | 8.18e-48 | 177 |
| Msa0346830 | AT2G33100.1 | 24.764 | 529 | 311 | 12 | 38 | 489 | 481 | 999 | 8.18e-48 | 177 |
| Msa0346830 | AT1G32180.1 | 23.473 | 524 | 324 | 11 | 38 | 490 | 427 | 944 | 1.45e-47 | 177 |
| Msa0346830 | AT1G32180.2 | 23.473 | 524 | 324 | 11 | 38 | 490 | 427 | 944 | 1.45e-47 | 177 |
| Msa0346830 | AT2G32620.3 | 34.579 | 321 | 178 | 9 | 33 | 333 | 245 | 553 | 1.96e-46 | 171 |
| Msa0346830 | AT2G32620.2 | 37.132 | 272 | 141 | 7 | 33 | 285 | 245 | 505 | 2.64e-46 | 169 |
| Msa0346830 | AT4G15320.2 | 27.389 | 471 | 264 | 12 | 33 | 439 | 245 | 701 | 1.84e-40 | 155 |
| Msa0346830 | AT4G15320.1 | 27.389 | 471 | 264 | 12 | 33 | 439 | 288 | 744 | 2.43e-40 | 155 |
| Msa0346830 | AT5G09870.1 | 44.586 | 157 | 78 | 2 | 23 | 170 | 483 | 639 | 3.44e-36 | 143 |
| Msa0346830 | AT5G09870.1 | 28.614 | 332 | 210 | 10 | 175 | 489 | 706 | 1027 | 7.62e-34 | 136 |
| Msa0346830 | AT5G05170.1 | 25.978 | 358 | 232 | 9 | 149 | 490 | 684 | 1024 | 6.73e-35 | 139 |
| Msa0346830 | AT5G05170.1 | 46.094 | 128 | 69 | 0 | 35 | 162 | 498 | 625 | 2.94e-34 | 137 |
| Msa0346830 | AT4G32410.1 | 27.576 | 330 | 215 | 8 | 177 | 490 | 718 | 1039 | 3.05e-34 | 137 |
| Msa0346830 | AT4G32410.1 | 43.796 | 137 | 77 | 0 | 38 | 174 | 517 | 653 | 4.46e-32 | 131 |
| Msa0346830 | AT4G39350.1 | 41.216 | 148 | 79 | 1 | 23 | 162 | 496 | 643 | 1.69e-33 | 135 |
| Msa0346830 | AT4G39350.1 | 27.246 | 334 | 212 | 8 | 175 | 489 | 720 | 1041 | 2.33e-32 | 132 |
| Msa0346830 | AT5G44030.3 | 43.200 | 125 | 71 | 0 | 38 | 162 | 178 | 302 | 2.37e-31 | 128 |
| Msa0346830 | AT5G44030.3 | 26.765 | 340 | 215 | 12 | 174 | 490 | 401 | 729 | 2.48e-28 | 119 |
| Msa0346830 | AT5G44030.2 | 43.200 | 125 | 71 | 0 | 38 | 162 | 486 | 610 | 4.06e-31 | 128 |
| Msa0346830 | AT5G44030.2 | 26.765 | 340 | 215 | 12 | 174 | 490 | 709 | 1037 | 3.93e-28 | 119 |
| Msa0346830 | AT5G44030.1 | 43.200 | 125 | 71 | 0 | 38 | 162 | 457 | 581 | 4.81e-31 | 128 |
| Msa0346830 | AT5G44030.1 | 26.765 | 340 | 215 | 12 | 174 | 490 | 680 | 1008 | 3.60e-28 | 119 |
Find 86 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATTGGATTCATACTTTA+TGG | 0.096303 | 3_1:-7659818 | Msa0346830:CDS |
| TTTGCTTCTTTGGTGGTTTA+TGG | 0.144769 | 3_1:-7658826 | Msa0346830:CDS |
| GCAATATATTTAGAGGTTTC+TGG | 0.151089 | 3_1:+7662204 | None:intergenic |
| TTGAGAGGTCCGGGTCTTTC+TGG | 0.163686 | 3_1:-7661959 | Msa0346830:CDS |
| AATAGAAGTGCATTATTATT+TGG | 0.173018 | 3_1:-7661920 | Msa0346830:CDS |
| GTGAACACTATTTGCTTCTT+TGG | 0.183474 | 3_1:-7658836 | Msa0346830:CDS |
| TAAACAACACGTGGAATTTC+TGG | 0.183636 | 3_1:+7662502 | None:intergenic |
| CTTGAAAATCCATAAGTAAA+AGG | 0.205743 | 3_1:+7659896 | None:intergenic |
| CATTTGATAGAGGTCATTTC+TGG | 0.217342 | 3_1:-7659097 | Msa0346830:CDS |
| AACAAATGCAATATATTTAG+AGG | 0.277003 | 3_1:+7662197 | None:intergenic |
| TATGAATCCAATAGCATATA+TGG | 0.280573 | 3_1:+7659826 | None:intergenic |
| GGTGGGATGAACAAAGAATT+TGG | 0.291492 | 3_1:-7659054 | Msa0346830:CDS |
| ACAGGTCAAGTACGAGAAAA+TGG | 0.301944 | 3_1:-7663026 | None:intergenic |
| TAGACTCCCCAAAGTAGTTT+TGG | 0.305921 | 3_1:+7660760 | None:intergenic |
| AAAGAAACACATGGCTTGTT+TGG | 0.307493 | 3_1:+7662233 | None:intergenic |
| TTGATGCCCAAAACTACTTT+GGG | 0.310084 | 3_1:-7660767 | Msa0346830:CDS |
| TTTGGAAGTCCAATTCAAAA+AGG | 0.311049 | 3_1:-7661902 | Msa0346830:intron |
| CTTGATGCCCAAAACTACTT+TGG | 0.340496 | 3_1:-7660768 | Msa0346830:CDS |
| ATGTCATCCATATATGCTAT+TGG | 0.425902 | 3_1:-7659833 | Msa0346830:CDS |
| CAAAGAAGGCATGCTTCAAT+TGG | 0.430014 | 3_1:-7659966 | Msa0346830:CDS |
| ATAGAGGTCATTTCTGGTGA+TGG | 0.431524 | 3_1:-7659091 | Msa0346830:CDS |
| TTTCCTAGTTAGCTATGTAA+TGG | 0.433495 | 3_1:-7658759 | Msa0346830:CDS |
| TGGTTGCAGCTAAGAGTCTC+AGG | 0.440382 | 3_1:-7662324 | Msa0346830:intron |
| GAGGCAGTTAAGAAATGGTT+AGG | 0.443261 | 3_1:-7658995 | Msa0346830:CDS |
| AACACTATTTGCTTCTTTGG+TGG | 0.448242 | 3_1:-7658833 | Msa0346830:CDS |
| CTACGAATCAAACACACAAT+GGG | 0.452008 | 3_1:-7660631 | Msa0346830:CDS |
| CTAAGATTGTGAAACATTTG+AGG | 0.452359 | 3_1:+7662168 | None:intergenic |
| TTGAAAATCCATAAGTAAAA+GGG | 0.454918 | 3_1:+7659897 | None:intergenic |
| TAAGATTGTGAAACATTTGA+GGG | 0.463319 | 3_1:+7662169 | None:intergenic |
| TGACAGAGGCAGTTAAGAAA+TGG | 0.472408 | 3_1:-7659000 | Msa0346830:CDS |
| ATGGCTTGTTTGGCTGAAGA+TGG | 0.488092 | 3_1:+7662243 | None:intergenic |
| TTTACGTGTCTCGTGAAAGA+AGG | 0.490832 | 3_1:-7662483 | Msa0346830:CDS |
| TGACAGATAGGATTCTCATA+TGG | 0.490844 | 3_1:-7660100 | Msa0346830:intron |
| CAATCCACTGCAAGTACATA+AGG | 0.491845 | 3_1:+7662285 | None:intergenic |
| ACATTTATGATAATCAATCT+AGG | 0.492978 | 3_1:-7662137 | Msa0346830:CDS |
| GATGGATGGTTTGAGAGGTC+CGG | 0.494154 | 3_1:-7661969 | Msa0346830:CDS |
| GAGCCATTACATAGCTAACT+AGG | 0.504338 | 3_1:+7658756 | None:intergenic |
| ATGCCTTCTTTGATATCAGT+TGG | 0.510191 | 3_1:+7659977 | None:intergenic |
| TGTTACAGGTCACAGACCCT+TGG | 0.513094 | 3_1:-7659162 | Msa0346830:intron |
| GATGGTTTGTTGTCCTCGGA+TGG | 0.514250 | 3_1:+7660713 | None:intergenic |
| ACAAATTCAACATTTGATAG+AGG | 0.517780 | 3_1:-7659107 | Msa0346830:CDS |
| TGGTGACTGATAGACCTTCT+CGG | 0.518496 | 3_1:-7662958 | Msa0346830:CDS |
| CCATTGTGTGTTTGATTCGT+AGG | 0.531038 | 3_1:+7660632 | None:intergenic |
| TATTTCAGACAATGTGGCAA+GGG | 0.537874 | 3_1:-7661991 | Msa0346830:intron |
| ACTATGAGTAACACAACCAT+TGG | 0.541281 | 3_1:+7658857 | None:intergenic |
| TTGAATTTGTGAGGAAGTGA+TGG | 0.541973 | 3_1:+7662460 | None:intergenic |
| AAGTACACACCAATGTATTG+AGG | 0.543839 | 3_1:+7662428 | None:intergenic |
| AGTACACACCAATGTATTGA+GGG | 0.544381 | 3_1:+7662429 | None:intergenic |
| ATGGATGGTTTGAGAGGTCC+GGG | 0.544571 | 3_1:-7661968 | Msa0346830:CDS |
| GTCTCAGGTTTAATCAGCAA+TGG | 0.549566 | 3_1:-7662309 | Msa0346830:CDS |
| GGTCCGGGTCTTTCTGGCAG+TGG | 0.551528 | 3_1:-7661953 | Msa0346830:CDS |
| ACAATGTGGCAAGGGATGGA+TGG | 0.559193 | 3_1:-7661983 | Msa0346830:CDS |
| CTTGAGTGATTCTATGTATG+TGG | 0.560568 | 3_1:+7660737 | None:intergenic |
| ATGGCTCAGTGTCAATGTGG+TGG | 0.563672 | 3_1:-7659072 | Msa0346830:CDS |
| TCAGACAATGTGGCAAGGGA+TGG | 0.566411 | 3_1:-7661987 | Msa0346830:intron |
| CCTACGAATCAAACACACAA+TGG | 0.567795 | 3_1:-7660632 | Msa0346830:CDS |
| TCAAGAAATATGAACAAGGT+AGG | 0.568930 | 3_1:-7658913 | Msa0346830:CDS |
| TGGCTCAGTGTCAATGTGGT+GGG | 0.570848 | 3_1:-7659071 | Msa0346830:CDS |
| TGATGCCCAAAACTACTTTG+GGG | 0.574100 | 3_1:-7660766 | Msa0346830:CDS |
| GCAATTTATTTCAGACAATG+TGG | 0.587290 | 3_1:-7661997 | Msa0346830:intron |
| GGATTTACCTCGATCCGAGA+AGG | 0.587807 | 3_1:+7662944 | None:intergenic |
| AGCTTTGTACATGTCTCCAA+TGG | 0.591743 | 3_1:-7658873 | Msa0346830:CDS |
| GCATGCTTCAATTGGTGAAG+TGG | 0.593888 | 3_1:-7659958 | Msa0346830:CDS |
| TCACTTCCTCACAAATTCAA+AGG | 0.597910 | 3_1:-7662457 | Msa0346830:CDS |
| GCACCTCCTTTGAATTTGTG+AGG | 0.599322 | 3_1:+7662451 | None:intergenic |
| TGGACCTTATGTACTTGCAG+TGG | 0.600660 | 3_1:-7662289 | Msa0346830:CDS |
| GCACCAACTGATATCAAAGA+AGG | 0.601020 | 3_1:-7659980 | Msa0346830:CDS |
| TTATTTCAGACAATGTGGCA+AGG | 0.603544 | 3_1:-7661992 | Msa0346830:intron |
| TATCAAATGTTGAATTTGTG+TGG | 0.607267 | 3_1:+7659111 | None:intergenic |
| TTACTAGAGAGTACTATCAC+TGG | 0.610277 | 3_1:-7660073 | Msa0346830:CDS |
| CAAGGGATGGATGGTTTGAG+AGG | 0.611416 | 3_1:-7661974 | Msa0346830:CDS |
| AGGAGGTGCCCTCAATACAT+TGG | 0.621577 | 3_1:-7662437 | Msa0346830:intron |
| CGAGACACGTAAACAACACG+TGG | 0.627556 | 3_1:+7662493 | None:intergenic |
| TTACCACTGCCAGAAAGACC+CGG | 0.628297 | 3_1:+7661950 | None:intergenic |
| AATGCAAACACTGCAAACCA+AGG | 0.637039 | 3_1:+7659145 | None:intergenic |
| CACATACATAGAATCACTCA+AGG | 0.639480 | 3_1:-7660736 | Msa0346830:CDS |
| ATGCAAACACTGCAAACCAA+GGG | 0.640787 | 3_1:+7659146 | None:intergenic |
| TGATAGACCTTCTCGGATCG+AGG | 0.649181 | 3_1:-7662951 | Msa0346830:intron |
| GAATCACTCAAGGCCATCCG+AGG | 0.649360 | 3_1:-7660726 | Msa0346830:CDS |
| TAGTTTGTTTGCAATGACAG+AGG | 0.658463 | 3_1:-7659014 | Msa0346830:CDS |
| CTTCCTCACAAATTCAAAGG+AGG | 0.671490 | 3_1:-7662454 | Msa0346830:CDS |
| TGGATCAAGAAAGAAACACA+TGG | 0.680933 | 3_1:+7662224 | None:intergenic |
| GTGATGGCTCAGTGTCAATG+TGG | 0.686344 | 3_1:-7659075 | Msa0346830:CDS |
| GGTGCACACCCTAAGAAACA+TGG | 0.694506 | 3_1:+7659998 | None:intergenic |
| AAAATCAAGAAATATGAACA+AGG | 0.697470 | 3_1:-7658917 | Msa0346830:CDS |
| TACGAATCAAACACACAATG+GGG | 0.714112 | 3_1:-7660630 | Msa0346830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTAGATTATAAATG+AGG | - | chr3_1:7659198-7659217 | Msa0346830:intron | 10.0% |
| !! | AATCAACAAAATATTAATTA+AGG | - | chr3_1:7659626-7659645 | Msa0346830:intron | 10.0% |
| !! | ATAAGAATAAAAATAAATGA+AGG | - | chr3_1:7660352-7660371 | Msa0346830:intron | 10.0% |
| !!! | ATTTTGTATAATAATTTTAG+AGG | + | chr3_1:7661327-7661346 | None:intergenic | 10.0% |
| !! | GAAATTTGAAAAATAAAAAT+AGG | - | chr3_1:7662420-7662439 | Msa0346830:intron | 10.0% |
| !! | TAAAAAATAGTTAATCACTT+TGG | + | chr3_1:7658964-7658983 | None:intergenic | 15.0% |
| !!! | GATTAACTATTTTTTAAATG+TGG | - | chr3_1:7658968-7658987 | Msa0346830:CDS | 15.0% |
| !!! | TTTTATTGTTTGTTAAAGAT+TGG | - | chr3_1:7659125-7659144 | Msa0346830:CDS | 15.0% |
| !! | ATGATTGCAAAATAATAATT+AGG | + | chr3_1:7659858-7659877 | None:intergenic | 15.0% |
| !!! | ATTTTACAAGTTTATTTTGT+AGG | - | chr3_1:7660268-7660287 | Msa0346830:intron | 15.0% |
| !! | TTGAAAAATATCAATCAATT+CGG | + | chr3_1:7661362-7661381 | None:intergenic | 15.0% |
| !! | GAGAAAAATATTGAGAAATT+CGG | - | chr3_1:7658721-7658740 | Msa0346830:CDS | 20.0% |
| !! | AATGATTATTAGTCCTTTAT+TGG | + | chr3_1:7658805-7658824 | None:intergenic | 20.0% |
| !!! | ATTATTCAATGTAATTTGTG+AGG | + | chr3_1:7658832-7658851 | None:intergenic | 20.0% |
| !! | AGTAGTTAACTATTTGTAAT+AGG | - | chr3_1:7658912-7658931 | Msa0346830:CDS | 20.0% |
| !! | TAAGTAAATTGTAAACTAAG+TGG | - | chr3_1:7658993-7659012 | Msa0346830:CDS | 20.0% |
| !! | TACAATTTACAATTTGCATT+CGG | + | chr3_1:7659046-7659065 | None:intergenic | 20.0% |
| !! | AAAGATTGGAAAAAAAAAGA+AGG | - | chr3_1:7659139-7659158 | Msa0346830:CDS | 20.0% |
| !! | AACAAATGCAATATATTTAG+AGG | + | chr3_1:7659531-7659550 | None:intergenic | 20.0% |
| !! | ACATTTATGATAATCAATCT+AGG | - | chr3_1:7659588-7659607 | Msa0346830:intron | 20.0% |
| !!! | TTTGATGATCATATAAATGA+TGG | - | chr3_1:7659699-7659718 | Msa0346830:intron | 20.0% |
| !!! | AATAGAAGTGCATTATTATT+TGG | - | chr3_1:7659805-7659824 | Msa0346830:CDS | 20.0% |
| !!! | AAATATGTACCTTTTTGAAT+TGG | + | chr3_1:7659835-7659854 | None:intergenic | 20.0% |
| !!! | ACAACTAAAAACCTAATTTT+AGG | + | chr3_1:7660451-7660470 | None:intergenic | 20.0% |
| !! | AAATTGTCTTCACTTATAAA+CGG | - | chr3_1:7660774-7660793 | Msa0346830:CDS | 20.0% |
| !! | AAATCAACCACATAAAAATT+TGG | - | chr3_1:7660830-7660849 | Msa0346830:intron | 20.0% |
| !!! | AAATAGTCCAAATTTTTATG+TGG | + | chr3_1:7660840-7660859 | None:intergenic | 20.0% |
| !!! | AAAGAAAAGTACTCTTATAT+TGG | + | chr3_1:7660914-7660933 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGATTCTTTTTGA+TGG | + | chr3_1:7661033-7661052 | None:intergenic | 20.0% |
| !! | TGATACATTTATCAAAATCT+AGG | - | chr3_1:7661135-7661154 | Msa0346830:intron | 20.0% |
| !! | GATACATTTATCAAAATCTA+GGG | - | chr3_1:7661136-7661155 | Msa0346830:intron | 20.0% |
| !! | GACTAAAATATCTATTTACT+TGG | + | chr3_1:7661167-7661186 | None:intergenic | 20.0% |
| !! | TATTACTATTTCGTAAATTG+AGG | - | chr3_1:7661394-7661413 | Msa0346830:intron | 20.0% |
| !! | ATTACTATTTCGTAAATTGA+GGG | - | chr3_1:7661395-7661414 | Msa0346830:intron | 20.0% |
| !! | ATGTTCTATAGATAGTAAAT+AGG | + | chr3_1:7661461-7661480 | None:intergenic | 20.0% |
| !!! | ACTATATGTGGTATATTTTT+GGG | + | chr3_1:7661523-7661542 | None:intergenic | 20.0% |
| !!! | TACTATATGTGGTATATTTT+TGG | + | chr3_1:7661524-7661543 | None:intergenic | 20.0% |
| !! | GATCAATTTAATACTATATG+TGG | + | chr3_1:7661535-7661554 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATTGACAGAT+AGG | - | chr3_1:7661613-7661632 | Msa0346830:intron | 20.0% |
| !! | TTGAAAATCCATAAGTAAAA+GGG | + | chr3_1:7661831-7661850 | None:intergenic | 20.0% |
| !!! | TTGAATATATGTTTTACCTT+TGG | + | chr3_1:7661976-7661995 | None:intergenic | 20.0% |
| !!! | AAATTCATGGTTTTAAATTG+CGG | + | chr3_1:7662091-7662110 | None:intergenic | 20.0% |
| !!! | ACCATGAATTTTATTATGAT+TGG | - | chr3_1:7662100-7662119 | Msa0346830:intron | 20.0% |
| !! | TCCAATCATAATAAAATTCA+TGG | + | chr3_1:7662104-7662123 | None:intergenic | 20.0% |
| !! | ACATGTTAAATTATAAAACC+AGG | + | chr3_1:7662530-7662549 | None:intergenic | 20.0% |
| !!! | TTTTAATTTACTGTTGTTAC+AGG | - | chr3_1:7662549-7662568 | Msa0346830:intron | 20.0% |
| !! | AAAATCAAGAAATATGAACA+AGG | - | chr3_1:7662808-7662827 | Msa0346830:intron | 20.0% |
| ! | GTTAACTATTTGTAATAGGT+TGG | - | chr3_1:7658916-7658935 | Msa0346830:CDS | 25.0% |
| ! | TGCAAATTGTAAATTGTATG+TGG | - | chr3_1:7659048-7659067 | Msa0346830:CDS | 25.0% |
| ! | GTTTATTCGTTAATTAGTTG+AGG | + | chr3_1:7659105-7659124 | None:intergenic | 25.0% |
| !! | ATTTCACACATTTTCTATTG+TGG | - | chr3_1:7659381-7659400 | Msa0346830:intron | 25.0% |
| ! | TAAGATTGTGAAACATTTGA+GGG | + | chr3_1:7659559-7659578 | None:intergenic | 25.0% |
| ! | TTACATGACAAGTAATAATG+TGG | + | chr3_1:7659947-7659966 | None:intergenic | 25.0% |
| ! | TACAAAAAGTTTAGATGTGT+TGG | + | chr3_1:7660166-7660185 | None:intergenic | 25.0% |
| !!! | CAAGTTTATTTTGTAGGTTT+TGG | - | chr3_1:7660274-7660293 | Msa0346830:intron | 25.0% |
| ! | GTACTATTCCTCTTAAAATT+TGG | + | chr3_1:7660306-7660325 | None:intergenic | 25.0% |
| !! | GATCATATTTTGTCTAATGT+AGG | - | chr3_1:7660796-7660815 | Msa0346830:intron | 25.0% |
| ! | CAAAAAGAATCTTTCAAAAG+AGG | - | chr3_1:7661034-7661053 | Msa0346830:intron | 25.0% |
| !! | TGTCGATCTTTACAATTTTA+AGG | + | chr3_1:7661189-7661208 | None:intergenic | 25.0% |
| ! | AGTTTACACATAACATAACA+AGG | - | chr3_1:7661295-7661314 | Msa0346830:intron | 25.0% |
| ! | GTTTACACATAACATAACAA+GGG | - | chr3_1:7661296-7661315 | Msa0346830:intron | 25.0% |
| ! | TTACTATTTCGTAAATTGAG+GGG | - | chr3_1:7661396-7661415 | Msa0346830:intron | 25.0% |
| ! | CTTGAAAATCCATAAGTAAA+AGG | + | chr3_1:7661832-7661851 | None:intergenic | 25.0% |
| ! | TATGAATCCAATAGCATATA+TGG | + | chr3_1:7661902-7661921 | None:intergenic | 25.0% |
| !! | TCTATTTAAAATTGCGATTG+TGG | - | chr3_1:7662007-7662026 | Msa0346830:intron | 25.0% |
| !! | TAGTAAGTAAATTTTTGTCC+TGG | - | chr3_1:7662509-7662528 | Msa0346830:CDS | 25.0% |
| ! | TATCAAATGTTGAATTTGTG+TGG | + | chr3_1:7662617-7662636 | None:intergenic | 25.0% |
| ! | ACAAATTCAACATTTGATAG+AGG | - | chr3_1:7662618-7662637 | Msa0346830:intron | 25.0% |
| !! | TCTTAGTTATCCAATTTTTG+AGG | - | chr3_1:7662990-7663009 | Msa0346830:CDS | 25.0% |
| !! | CTTAGTTATCCAATTTTTGA+GGG | - | chr3_1:7662991-7663010 | Msa0346830:CDS | 25.0% |
| !!! | TTAGTTATCCAATTTTTGAG+GGG | - | chr3_1:7662992-7663011 | Msa0346830:CDS | 25.0% |
| GCAATATATTTAGAGGTTTC+TGG | + | chr3_1:7659524-7659543 | None:intergenic | 30.0% | |
| CTAAGATTGTGAAACATTTG+AGG | + | chr3_1:7659560-7659579 | None:intergenic | 30.0% | |
| GCAATTTATTTCAGACAATG+TGG | - | chr3_1:7659728-7659747 | Msa0346830:intron | 30.0% | |
| TTTGGAAGTCCAATTCAAAA+AGG | - | chr3_1:7659823-7659842 | Msa0346830:CDS | 30.0% | |
| GATTGCAAAAAATGAATGTG+TGG | + | chr3_1:7659905-7659924 | None:intergenic | 30.0% | |
| AAGAGGAATAGTACATAACT+AGG | - | chr3_1:7660312-7660331 | Msa0346830:intron | 30.0% | |
| ATTATCTACTAGCAGCTTAA+AGG | + | chr3_1:7660414-7660433 | None:intergenic | 30.0% | |
| ! | GCTAGTAGATAATTTTTGCT+AGG | - | chr3_1:7660421-7660440 | Msa0346830:intron | 30.0% |
| GTAAAATCTCTTAGAACTTG+TGG | - | chr3_1:7660492-7660511 | Msa0346830:intron | 30.0% | |
| !! | AAGTTTTATGAGGTTATGCT+AGG | + | chr3_1:7660532-7660551 | None:intergenic | 30.0% |
| TGATACCATCTTAGAATTTG+TGG | - | chr3_1:7660710-7660729 | Msa0346830:CDS | 30.0% | |
| ! | CTTAACCACAAATTCTAAGA+TGG | + | chr3_1:7660718-7660737 | None:intergenic | 30.0% |
| !! | CAGTTTTGTGTAGTTATGTT+AGG | + | chr3_1:7660741-7660760 | None:intergenic | 30.0% |
| AAATGCTAACTTCAATGTTG+TGG | + | chr3_1:7660883-7660902 | None:intergenic | 30.0% | |
| TACTATTTCGTAAATTGAGG+GGG | - | chr3_1:7661397-7661416 | Msa0346830:intron | 30.0% | |
| !! | GGCATTTTAGTCATTGAATT+TGG | + | chr3_1:7661440-7661459 | None:intergenic | 30.0% |
| ! | CTAAGAAACATGGTGTTTTT+GGG | + | chr3_1:7661720-7661739 | None:intergenic | 30.0% |
| CAAAAACACCATGTTTCTTA+GGG | - | chr3_1:7661719-7661738 | Msa0346830:intron | 30.0% | |
| ! | AAATACAGCCCTTTTACTTA+TGG | - | chr3_1:7661820-7661839 | Msa0346830:intron | 30.0% |
| ATGTCATCCATATATGCTAT+TGG | - | chr3_1:7661892-7661911 | Msa0346830:intron | 30.0% | |
| GCTATTGGATTCATACTTTA+TGG | - | chr3_1:7661907-7661926 | Msa0346830:CDS | 30.0% | |
| GTTTACATTGTGGTAAAATG+CGG | - | chr3_1:7662043-7662062 | Msa0346830:intron | 30.0% | |
| !!! | CTTATTTTTTCAAACCAAGC+AGG | + | chr3_1:7662127-7662146 | None:intergenic | 30.0% |
| CAAAATTGTCTATGCTACAA+TGG | - | chr3_1:7662179-7662198 | Msa0346830:CDS | 30.0% | |
| AATTGAAATTCGAATTCTCC+TGG | - | chr3_1:7662266-7662285 | Msa0346830:CDS | 30.0% | |
| ATGTAAAAACCAAGTGATTG+AGG | + | chr3_1:7662329-7662348 | None:intergenic | 30.0% | |
| !! | CACTTGGTTTTTACATGAAA+CGG | - | chr3_1:7662333-7662352 | Msa0346830:intron | 30.0% |
| TCAAGAAATATGAACAAGGT+AGG | - | chr3_1:7662812-7662831 | Msa0346830:intron | 30.0% | |
| !! | AGAGATTTTGAAGACATGTT+TGG | - | chr3_1:7662937-7662956 | Msa0346830:intron | 30.0% |
| TTTCCTAGTTAGCTATGTAA+TGG | - | chr3_1:7662966-7662985 | Msa0346830:CDS | 30.0% | |
| GTTATAATCCCCTCAAAAAT+TGG | + | chr3_1:7663003-7663022 | None:intergenic | 30.0% | |
| ! | TCACCATACGAAGATTTTTG+GGG | + | chr3_1:7658753-7658772 | None:intergenic | 35.0% |
| ! | GTCACCATACGAAGATTTTT+GGG | + | chr3_1:7658754-7658773 | None:intergenic | 35.0% |
| ! | AGTCACCATACGAAGATTTT+TGG | + | chr3_1:7658755-7658774 | None:intergenic | 35.0% |
| GATCGAGGTAAATCCAATAA+AGG | - | chr3_1:7658789-7658808 | Msa0346830:CDS | 35.0% | |
| TAAACAACACGTGGAATTTC+TGG | + | chr3_1:7659226-7659245 | None:intergenic | 35.0% | |
| TTGAATTTGTGAGGAAGTGA+TGG | + | chr3_1:7659268-7659287 | None:intergenic | 35.0% | |
| TCACTTCCTCACAAATTCAA+AGG | - | chr3_1:7659268-7659287 | Msa0346830:intron | 35.0% | |
| AGTACACACCAATGTATTGA+GGG | + | chr3_1:7659299-7659318 | None:intergenic | 35.0% | |
| AAGTACACACCAATGTATTG+AGG | + | chr3_1:7659300-7659319 | None:intergenic | 35.0% | |
| !! | AAAGAAACACATGGCTTGTT+TGG | + | chr3_1:7659495-7659514 | None:intergenic | 35.0% |
| TGGATCAAGAAAGAAACACA+TGG | + | chr3_1:7659504-7659523 | None:intergenic | 35.0% | |
| !! | TCAATCTAGGACTGCTTTTA+AGG | - | chr3_1:7659601-7659620 | Msa0346830:intron | 35.0% |
| TTATTTCAGACAATGTGGCA+AGG | - | chr3_1:7659733-7659752 | Msa0346830:intron | 35.0% | |
| TATTTCAGACAATGTGGCAA+GGG | - | chr3_1:7659734-7659753 | Msa0346830:intron | 35.0% | |
| !! | CATGTTTCAAAGAGTATCCA+CGG | + | chr3_1:7660110-7660129 | None:intergenic | 35.0% |
| ! | CTTAATCTTGATGACCCATT+AGG | - | chr3_1:7660138-7660157 | Msa0346830:intron | 35.0% |
| TAGATGTGTTGGATCCTAAT+GGG | + | chr3_1:7660155-7660174 | None:intergenic | 35.0% | |
| TTAGATGTGTTGGATCCTAA+TGG | + | chr3_1:7660156-7660175 | None:intergenic | 35.0% | |
| TAAGAGTCGTTGAATGATGT+AGG | - | chr3_1:7660210-7660229 | Msa0346830:intron | 35.0% | |
| ! | GGTCACAACCAAATTTTAAG+AGG | - | chr3_1:7660295-7660314 | Msa0346830:intron | 35.0% |
| CTTTGACAGAGACTTGATTA+AGG | - | chr3_1:7660384-7660403 | Msa0346830:intron | 35.0% | |
| TGCTAGGTGTACCTAAAATT+AGG | - | chr3_1:7660437-7660456 | Msa0346830:intron | 35.0% | |
| AATCTCTTAGAACTTGTGGT+TGG | - | chr3_1:7660496-7660515 | Msa0346830:intron | 35.0% | |
| TCAATAGTTCTTGTCATGAG+GGG | + | chr3_1:7660622-7660641 | None:intergenic | 35.0% | |
| GTCAATAGTTCTTGTCATGA+GGG | + | chr3_1:7660623-7660642 | None:intergenic | 35.0% | |
| ATGACAAGAACTATTGACCT+TGG | - | chr3_1:7660625-7660644 | Msa0346830:CDS | 35.0% | |
| AGCTTCTGTTAAGATCTGTT+GGG | + | chr3_1:7660689-7660708 | None:intergenic | 35.0% | |
| TTGATGCCCAAAACTACTTT+GGG | - | chr3_1:7660958-7660977 | Msa0346830:intron | 35.0% | |
| CTTGAGTGATTCTATGTATG+TGG | + | chr3_1:7660991-7661010 | None:intergenic | 35.0% | |
| CACATACATAGAATCACTCA+AGG | - | chr3_1:7660989-7661008 | Msa0346830:intron | 35.0% | |
| !!! | TTTTGATGGTTTGTTGTCCT+CGG | + | chr3_1:7661019-7661038 | None:intergenic | 35.0% |
| CTACGAATCAAACACACAAT+GGG | - | chr3_1:7661094-7661113 | Msa0346830:intron | 35.0% | |
| TACGAATCAAACACACAATG+GGG | - | chr3_1:7661095-7661114 | Msa0346830:intron | 35.0% | |
| GACTTCTATGTAGTCAAATG+TGG | - | chr3_1:7661481-7661500 | Msa0346830:intron | 35.0% | |
| TGACAGATAGGATTCTCATA+TGG | - | chr3_1:7661625-7661644 | Msa0346830:intron | 35.0% | |
| !! | TTACTAGAGAGTACTATCAC+TGG | - | chr3_1:7661652-7661671 | Msa0346830:intron | 35.0% |
| !!! | AACATGGTGTTTTTGGGTAA+AGG | + | chr3_1:7661714-7661733 | None:intergenic | 35.0% |
| ! | CCTAAGAAACATGGTGTTTT+TGG | + | chr3_1:7661721-7661740 | None:intergenic | 35.0% |
| CCAAAAACACCATGTTTCTT+AGG | - | chr3_1:7661718-7661737 | Msa0346830:intron | 35.0% | |
| ATGCCTTCTTTGATATCAGT+TGG | + | chr3_1:7661751-7661770 | None:intergenic | 35.0% | |
| AGGAATATCTGTGTTTCCAA+AGG | - | chr3_1:7661957-7661976 | Msa0346830:CDS | 35.0% | |
| GTTTGCAAACACAATTGCAT+CGG | + | chr3_1:7662069-7662088 | None:intergenic | 35.0% | |
| TTATTATGATTGGACCTGCT+TGG | - | chr3_1:7662110-7662129 | Msa0346830:intron | 35.0% | |
| ACAATGGACCATTGGTAAAT+TGG | - | chr3_1:7662195-7662214 | Msa0346830:CDS | 35.0% | |
| TAGTTAAAGACAAATCGTCC+AGG | + | chr3_1:7662287-7662306 | None:intergenic | 35.0% | |
| CATTTGATAGAGGTCATTTC+TGG | - | chr3_1:7662628-7662647 | Msa0346830:intron | 35.0% | |
| !! | TAGTTTGTTTGCAATGACAG+AGG | - | chr3_1:7662711-7662730 | Msa0346830:intron | 35.0% |
| !! | CAAGGTAGGTTTGATTTTCA+AGG | - | chr3_1:7662826-7662845 | Msa0346830:intron | 35.0% |
| ACTATGAGTAACACAACCAT+TGG | + | chr3_1:7662871-7662890 | None:intergenic | 35.0% | |
| GTGAACACTATTTGCTTCTT+TGG | - | chr3_1:7662889-7662908 | Msa0346830:intron | 35.0% | |
| AACACTATTTGCTTCTTTGG+TGG | - | chr3_1:7662892-7662911 | Msa0346830:intron | 35.0% | |
| ! | TTTGCTTCTTTGGTGGTTTA+TGG | - | chr3_1:7662899-7662918 | Msa0346830:intron | 35.0% |
| !!! | CATACGAAGATTTTTGGGGT+CGG | + | chr3_1:7658749-7658768 | None:intergenic | 40.0% |
| TTTACGTGTCTCGTGAAAGA+AGG | - | chr3_1:7659242-7659261 | Msa0346830:intron | 40.0% | |
| CTTCCTCACAAATTCAAAGG+AGG | - | chr3_1:7659271-7659290 | Msa0346830:intron | 40.0% | |
| GTCTCAGGTTTAATCAGCAA+TGG | - | chr3_1:7659416-7659435 | Msa0346830:intron | 40.0% | |
| CAATCCACTGCAAGTACATA+AGG | + | chr3_1:7659443-7659462 | None:intergenic | 40.0% | |
| CAACGACTCTTAATAGCTTC+AGG | + | chr3_1:7660202-7660221 | None:intergenic | 40.0% | |
| !! | CCTCACAGGTAAGTTTTATG+AGG | + | chr3_1:7660542-7660561 | None:intergenic | 40.0% |
| CCTCATAAAACTTACCTGTG+AGG | - | chr3_1:7660539-7660558 | Msa0346830:intron | 40.0% | |
| GGTCAATAGTTCTTGTCATG+AGG | + | chr3_1:7660624-7660643 | None:intergenic | 40.0% | |
| GAGCTTCTGTTAAGATCTGT+TGG | + | chr3_1:7660690-7660709 | None:intergenic | 40.0% | |
| !! | CTACACAAAACTGACTTGTG+AGG | - | chr3_1:7660748-7660767 | Msa0346830:CDS | 40.0% |
| CTTGATGCCCAAAACTACTT+TGG | - | chr3_1:7660957-7660976 | Msa0346830:intron | 40.0% | |
| TGATGCCCAAAACTACTTTG+GGG | - | chr3_1:7660959-7660978 | Msa0346830:intron | 40.0% | |
| ! | AGACTCCCCAAAGTAGTTTT+GGG | + | chr3_1:7660967-7660986 | None:intergenic | 40.0% |
| ! | TAGACTCCCCAAAGTAGTTT+TGG | + | chr3_1:7660968-7660987 | None:intergenic | 40.0% |
| ! | CCATTGTGTGTTTGATTCGT+AGG | + | chr3_1:7661096-7661115 | None:intergenic | 40.0% |
| CCTACGAATCAAACACACAA+TGG | - | chr3_1:7661093-7661112 | Msa0346830:intron | 40.0% | |
| CTATGTAGTCAAATGTGGAG+TGG | - | chr3_1:7661486-7661505 | Msa0346830:intron | 40.0% | |
| GCACCAACTGATATCAAAGA+AGG | - | chr3_1:7661745-7661764 | Msa0346830:intron | 40.0% | |
| ! | CAAAGAAGGCATGCTTCAAT+TGG | - | chr3_1:7661759-7661778 | Msa0346830:intron | 40.0% |
| TCTATGCTACAATGGACCAT+TGG | - | chr3_1:7662187-7662206 | Msa0346830:CDS | 40.0% | |
| ATGGACCATTGGTAAATTGG+AGG | - | chr3_1:7662198-7662217 | Msa0346830:CDS | 40.0% | |
| ACCATTGGTAAATTGGAGGT+CGG | - | chr3_1:7662202-7662221 | Msa0346830:CDS | 40.0% | |
| ATGCAAACACTGCAAACCAA+GGG | + | chr3_1:7662582-7662601 | None:intergenic | 40.0% | |
| AATGCAAACACTGCAAACCA+AGG | + | chr3_1:7662583-7662602 | None:intergenic | 40.0% | |
| !! | ATAGAGGTCATTTCTGGTGA+TGG | - | chr3_1:7662634-7662653 | Msa0346830:intron | 40.0% |
| GGTGGGATGAACAAAGAATT+TGG | - | chr3_1:7662671-7662690 | Msa0346830:intron | 40.0% | |
| TGACAGAGGCAGTTAAGAAA+TGG | - | chr3_1:7662725-7662744 | Msa0346830:intron | 40.0% | |
| GAGGCAGTTAAGAAATGGTT+AGG | - | chr3_1:7662730-7662749 | Msa0346830:intron | 40.0% | |
| ! | AGCTTTGTACATGTCTCCAA+TGG | - | chr3_1:7662852-7662871 | Msa0346830:intron | 40.0% |
| GAGCCATTACATAGCTAACT+AGG | + | chr3_1:7662972-7662991 | None:intergenic | 40.0% | |
| CGACCCCAAAAATCTTCGTA+TGG | - | chr3_1:7658747-7658766 | Msa0346830:CDS | 45.0% | |
| TGGTGACTGATAGACCTTCT+CGG | - | chr3_1:7658767-7658786 | Msa0346830:CDS | 45.0% | |
| GCACCTCCTTTGAATTTGTG+AGG | + | chr3_1:7659277-7659296 | None:intergenic | 45.0% | |
| TGGACCTTATGTACTTGCAG+TGG | - | chr3_1:7659436-7659455 | Msa0346830:intron | 45.0% | |
| !! | ATGGCTTGTTTGGCTGAAGA+TGG | + | chr3_1:7659485-7659504 | None:intergenic | 45.0% |
| AAACCTCAAGTGTTCATCCG+TGG | - | chr3_1:7660090-7660109 | Msa0346830:CDS | 45.0% | |
| TATCCACGGATGAACACTTG+AGG | + | chr3_1:7660096-7660115 | None:intergenic | 45.0% | |
| TCTCACTCTTGAGCTGATCT+AGG | - | chr3_1:7660470-7660489 | Msa0346830:intron | 45.0% | |
| AAGTGCAATTCTCTCCTCAC+AGG | + | chr3_1:7660556-7660575 | None:intergenic | 45.0% | |
| ! | GAACTATTGACCTTGGTTCG+TGG | - | chr3_1:7660632-7660651 | Msa0346830:CDS | 45.0% |
| CCATTTATGTCCACGAACCA+AGG | + | chr3_1:7660645-7660664 | None:intergenic | 45.0% | |
| ! | CCTTGGTTCGTGGACATAAA+TGG | - | chr3_1:7660642-7660661 | Msa0346830:CDS | 45.0% |
| TGGTTCGTGGACATAAATGG+TGG | - | chr3_1:7660645-7660664 | Msa0346830:CDS | 45.0% | |
| ! | TCGTGGACATAAATGGTGGA+TGG | - | chr3_1:7660649-7660668 | Msa0346830:CDS | 45.0% |
| ! | ATCTTTTGCACTGCAGAGGA+TGG | - | chr3_1:7661677-7661696 | Msa0346830:intron | 45.0% |
| GCATGCTTCAATTGGTGAAG+TGG | - | chr3_1:7661767-7661786 | Msa0346830:intron | 45.0% | |
| CCTTTCAAGAAGCAGACTTG+AGG | + | chr3_1:7661940-7661959 | None:intergenic | 45.0% | |
| CCTCAAGTCTGCTTCTTGAA+AGG | - | chr3_1:7661937-7661956 | Msa0346830:CDS | 45.0% | |
| TGCTGCGAACGTTTACATTG+TGG | - | chr3_1:7662033-7662052 | Msa0346830:intron | 45.0% | |
| CCATTGGTAAATTGGAGGTC+GGG | - | chr3_1:7662203-7662222 | Msa0346830:CDS | 45.0% | |
| ACCACTTGACCTCAATCACT+TGG | - | chr3_1:7662317-7662336 | Msa0346830:CDS | 45.0% | |
| ACCAAGTGATTGAGGTCAAG+TGG | + | chr3_1:7662321-7662340 | None:intergenic | 45.0% | |
| !! | AAATTTGAAAAATAAAAATA+GGG | - | chr3_1:7662421-7662440 | Msa0346830:intron | 5.0% |
| TGATAGACCTTCTCGGATCG+AGG | - | chr3_1:7658774-7658793 | Msa0346830:CDS | 50.0% | |
| GGATTTACCTCGATCCGAGA+AGG | + | chr3_1:7658784-7658803 | None:intergenic | 50.0% | |
| CGAGACACGTAAACAACACG+TGG | + | chr3_1:7659235-7659254 | None:intergenic | 50.0% | |
| !! | AGGAGGTGCCCTCAATACAT+TGG | - | chr3_1:7659288-7659307 | Msa0346830:intron | 50.0% |
| TGGTTGCAGCTAAGAGTCTC+AGG | - | chr3_1:7659401-7659420 | Msa0346830:intron | 50.0% | |
| TCAGACAATGTGGCAAGGGA+TGG | - | chr3_1:7659738-7659757 | Msa0346830:intron | 50.0% | |
| ACAATGTGGCAAGGGATGGA+TGG | - | chr3_1:7659742-7659761 | Msa0346830:intron | 50.0% | |
| CAAGGGATGGATGGTTTGAG+AGG | - | chr3_1:7659751-7659770 | Msa0346830:intron | 50.0% | |
| GATGGATGGTTTGAGAGGTC+CGG | - | chr3_1:7659756-7659775 | Msa0346830:intron | 50.0% | |
| ATGGATGGTTTGAGAGGTCC+GGG | - | chr3_1:7659757-7659776 | Msa0346830:intron | 50.0% | |
| TTACCACTGCCAGAAAGACC+CGG | + | chr3_1:7659778-7659797 | None:intergenic | 50.0% | |
| ! | GAACTTGTGGTTGGTGTGCT+TGG | - | chr3_1:7660505-7660524 | Msa0346830:intron | 50.0% |
| !! | GATGGTTTGTTGTCCTCGGA+TGG | + | chr3_1:7661015-7661034 | None:intergenic | 50.0% |
| ! | GGCTATCTTTTGCACTGCAG+AGG | - | chr3_1:7661673-7661692 | Msa0346830:intron | 50.0% |
| GGTGCACACCCTAAGAAACA+TGG | + | chr3_1:7661730-7661749 | None:intergenic | 50.0% | |
| CCCGACCTCCAATTTACCAA+TGG | + | chr3_1:7662206-7662225 | None:intergenic | 50.0% | |
| TTGGTAAATTGGAGGTCGGG+TGG | - | chr3_1:7662206-7662225 | Msa0346830:CDS | 50.0% | |
| TGTTACAGGTCACAGACCCT+TGG | - | chr3_1:7662563-7662582 | Msa0346830:intron | 50.0% | |
| GTGATGGCTCAGTGTCAATG+TGG | - | chr3_1:7662650-7662669 | Msa0346830:intron | 50.0% | |
| ATGGCTCAGTGTCAATGTGG+TGG | - | chr3_1:7662653-7662672 | Msa0346830:intron | 50.0% | |
| TGGCTCAGTGTCAATGTGGT+GGG | - | chr3_1:7662654-7662673 | Msa0346830:intron | 50.0% | |
| TTGAGAGGTCCGGGTCTTTC+TGG | - | chr3_1:7659766-7659785 | Msa0346830:intron | 55.0% | |
| GAATCACTCAAGGCCATCCG+AGG | - | chr3_1:7660999-7661018 | Msa0346830:intron | 55.0% | |
| ! | GGTCCGGGTCTTTCTGGCAG+TGG | - | chr3_1:7659772-7659791 | Msa0346830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 7658703 | 7663044 | 7658703 | ID=Msa0346830;Name=Msa0346830 |
| chr3_1 | mRNA | 7658703 | 7663044 | 7658703 | ID=Msa0346830-mRNA-1;Parent=Msa0346830;Name=Msa0346830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|7|0|491 |
| chr3_1 | exon | 7662952 | 7663044 | 7662952 | ID=Msa0346830-mRNA-1:exon:2157;Parent=Msa0346830-mRNA-1 |
| chr3_1 | exon | 7662438 | 7662539 | 7662438 | ID=Msa0346830-mRNA-1:exon:2156;Parent=Msa0346830-mRNA-1 |
| chr3_1 | exon | 7662125 | 7662337 | 7662125 | ID=Msa0346830-mRNA-1:exon:2155;Parent=Msa0346830-mRNA-1 |
| chr3_1 | exon | 7661903 | 7662005 | 7661903 | ID=Msa0346830-mRNA-1:exon:2154;Parent=Msa0346830-mRNA-1 |
| chr3_1 | exon | 7660623 | 7660801 | 7660623 | ID=Msa0346830-mRNA-1:exon:2153;Parent=Msa0346830-mRNA-1 |
| chr3_1 | exon | 7659805 | 7660116 | 7659805 | ID=Msa0346830-mRNA-1:exon:2152;Parent=Msa0346830-mRNA-1 |
| chr3_1 | exon | 7658703 | 7659176 | 7658703 | ID=Msa0346830-mRNA-1:exon:2151;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7662952 | 7663044 | 7662952 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7662438 | 7662539 | 7662438 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7662125 | 7662337 | 7662125 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7661903 | 7662005 | 7661903 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7660623 | 7660801 | 7660623 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7659805 | 7660116 | 7659805 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| chr3_1 | CDS | 7658703 | 7659176 | 7658703 | ID=Msa0346830-mRNA-1:cds;Parent=Msa0346830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
