Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190800 | XP_003593387.1 | 95.730 | 445 | 19 | 0 | 1 | 445 | 1 | 445 | 0.0 | 880 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190800 | sp|Q9C5J4|Y3210_ARATH | 40.947 | 359 | 193 | 4 | 6 | 359 | 78 | 422 | 1.09e-83 | 269 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190800 | G7IK28 | 95.730 | 445 | 19 | 0 | 1 | 445 | 1 | 445 | 0.0 | 880 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0190800 | Msa0272150 | 0.974373 | 4.835190e-138 | -8.615850e-47 |
Msa0190800 | Msa0311390 | 0.877215 | 7.516070e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190800 | MtrunA17_Chr2g0280541 | 95.730 | 445 | 19 | 0 | 1 | 445 | 1 | 445 | 0.0 | 880 |
Msa0190800 | MtrunA17_Chr4g0023801 | 37.214 | 481 | 254 | 12 | 3 | 445 | 75 | 545 | 2.82e-94 | 294 |
Msa0190800 | MtrunA17_Chr4g0037661 | 28.429 | 401 | 256 | 8 | 1 | 375 | 74 | 469 | 2.06e-43 | 160 |
Msa0190800 | MtrunA17_Chr1g0163311 | 29.557 | 406 | 241 | 12 | 1 | 373 | 67 | 460 | 1.19e-42 | 157 |
Msa0190800 | MtrunA17_Chr1g0195911 | 27.739 | 429 | 259 | 7 | 1 | 393 | 102 | 515 | 3.71e-36 | 140 |
Msa0190800 | MtrunA17_Chr8g0374011 | 30.424 | 401 | 230 | 7 | 1 | 358 | 106 | 500 | 1.70e-35 | 139 |
Msa0190800 | MtrunA17_Chr1g0199631 | 30.633 | 395 | 230 | 10 | 1 | 358 | 57 | 444 | 2.88e-34 | 134 |
Msa0190800 | MtrunA17_Chr1g0191711 | 27.763 | 371 | 222 | 9 | 2 | 358 | 129 | 467 | 1.90e-33 | 132 |
Msa0190800 | MtrunA17_Chr2g0320691 | 26.700 | 397 | 247 | 9 | 1 | 358 | 91 | 482 | 3.09e-33 | 132 |
Msa0190800 | MtrunA17_Chr2g0303541 | 28.288 | 403 | 238 | 8 | 1 | 358 | 93 | 489 | 5.25e-33 | 131 |
Msa0190800 | MtrunA17_Chr4g0010091 | 28.173 | 394 | 229 | 8 | 2 | 358 | 101 | 477 | 1.22e-32 | 130 |
Msa0190800 | MtrunA17_Chr2g0279481 | 26.477 | 457 | 258 | 12 | 1 | 385 | 110 | 560 | 1.50e-32 | 130 |
Msa0190800 | MtrunA17_Chr8g0382231 | 24.062 | 453 | 263 | 11 | 1 | 401 | 119 | 542 | 1.03e-31 | 127 |
Msa0190800 | MtrunA17_Chr4g0050021 | 25.607 | 453 | 272 | 8 | 1 | 391 | 110 | 559 | 2.44e-31 | 127 |
Msa0190800 | MtrunA17_Chr7g0268781 | 26.606 | 436 | 258 | 11 | 1 | 393 | 102 | 518 | 3.17e-31 | 126 |
Msa0190800 | MtrunA17_Chr7g0245201 | 29.227 | 414 | 229 | 12 | 2 | 374 | 129 | 519 | 2.81e-30 | 123 |
Msa0190800 | MtrunA17_Chr5g0401341 | 27.968 | 379 | 247 | 9 | 3 | 358 | 94 | 469 | 7.73e-29 | 119 |
Msa0190800 | MtrunA17_Chr2g0285511 | 28.058 | 417 | 249 | 12 | 1 | 375 | 94 | 501 | 2.37e-28 | 117 |
Msa0190800 | MtrunA17_Chr1g0207461 | 25.907 | 386 | 251 | 9 | 3 | 359 | 96 | 475 | 6.92e-27 | 113 |
Msa0190800 | MtrunA17_Chr4g0076521 | 26.121 | 379 | 241 | 12 | 8 | 361 | 100 | 464 | 2.00e-26 | 112 |
Msa0190800 | MtrunA17_Chr5g0401451 | 25.806 | 403 | 255 | 11 | 2 | 374 | 107 | 495 | 2.61e-26 | 112 |
Msa0190800 | MtrunA17_Chr3g0108331 | 26.667 | 390 | 219 | 12 | 2 | 358 | 91 | 446 | 2.32e-25 | 108 |
Msa0190800 | MtrunA17_Chr4g0053841 | 25.935 | 401 | 254 | 9 | 2 | 374 | 82 | 467 | 1.71e-24 | 106 |
Msa0190800 | MtrunA17_Chr1g0150191 | 26.943 | 386 | 250 | 9 | 1 | 358 | 93 | 474 | 4.41e-24 | 105 |
Msa0190800 | MtrunA17_Chr5g0432861 | 25.313 | 399 | 222 | 11 | 2 | 358 | 92 | 456 | 4.40e-23 | 102 |
Msa0190800 | MtrunA17_Chr1g0181181 | 25.581 | 473 | 268 | 15 | 1 | 420 | 94 | 535 | 1.23e-22 | 100 |
Msa0190800 | MtrunA17_Chr2g0332281 | 30.153 | 262 | 152 | 7 | 122 | 358 | 24 | 279 | 2.55e-21 | 95.9 |
Msa0190800 | MtrunA17_Chr4g0003891 | 28.159 | 277 | 181 | 6 | 114 | 373 | 39 | 314 | 5.03e-20 | 92.0 |
Msa0190800 | MtrunA17_Chr5g0412591 | 27.195 | 353 | 191 | 9 | 67 | 358 | 128 | 475 | 6.45e-20 | 92.4 |
Msa0190800 | MtrunA17_Chr2g0290741 | 25.654 | 382 | 229 | 13 | 8 | 361 | 100 | 454 | 6.15e-19 | 89.4 |
Msa0190800 | MtrunA17_Chr8g0367891 | 23.704 | 405 | 235 | 11 | 1 | 358 | 93 | 470 | 2.66e-16 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190800 | AT3G22104.4 | 40.947 | 359 | 193 | 4 | 6 | 359 | 3 | 347 | 8.38e-86 | 269 |
Msa0190800 | AT3G22104.2 | 40.947 | 359 | 193 | 4 | 6 | 359 | 3 | 347 | 8.38e-86 | 269 |
Msa0190800 | AT3G22104.3 | 40.947 | 359 | 193 | 4 | 6 | 359 | 3 | 347 | 8.38e-86 | 269 |
Msa0190800 | AT3G22104.1 | 40.947 | 359 | 193 | 4 | 6 | 359 | 78 | 422 | 1.11e-84 | 269 |
Msa0190800 | AT3G19850.1 | 29.723 | 397 | 233 | 9 | 6 | 370 | 81 | 463 | 5.99e-47 | 170 |
Msa0190800 | AT3G08570.1 | 28.922 | 408 | 243 | 9 | 2 | 377 | 103 | 495 | 5.61e-35 | 137 |
Msa0190800 | AT5G48800.1 | 29.412 | 374 | 236 | 7 | 2 | 358 | 108 | 470 | 6.42e-35 | 137 |
Msa0190800 | AT2G47860.1 | 28.675 | 415 | 243 | 9 | 1 | 377 | 100 | 499 | 2.06e-33 | 133 |
Msa0190800 | AT1G50280.2 | 28.351 | 388 | 249 | 9 | 6 | 369 | 48 | 430 | 2.28e-33 | 131 |
Msa0190800 | AT5G66560.4 | 30.556 | 396 | 229 | 9 | 1 | 358 | 90 | 477 | 2.92e-33 | 132 |
Msa0190800 | AT1G50280.1 | 28.351 | 388 | 249 | 9 | 6 | 369 | 81 | 463 | 3.03e-33 | 131 |
Msa0190800 | AT5G03250.1 | 28.469 | 418 | 250 | 10 | 1 | 375 | 94 | 505 | 3.14e-33 | 132 |
Msa0190800 | AT2G47860.3 | 28.675 | 415 | 243 | 9 | 1 | 377 | 123 | 522 | 3.47e-33 | 132 |
Msa0190800 | AT5G66560.1 | 30.556 | 396 | 229 | 9 | 1 | 358 | 129 | 516 | 3.62e-33 | 132 |
Msa0190800 | AT5G66560.3 | 30.556 | 396 | 229 | 9 | 1 | 358 | 100 | 487 | 4.46e-33 | 132 |
Msa0190800 | AT3G08660.3 | 28.788 | 396 | 238 | 8 | 2 | 377 | 40 | 411 | 5.39e-32 | 128 |
Msa0190800 | AT3G08660.1 | 28.788 | 396 | 238 | 8 | 2 | 377 | 100 | 471 | 1.09e-31 | 127 |
Msa0190800 | AT2G47860.5 | 29.794 | 339 | 195 | 6 | 77 | 377 | 48 | 381 | 5.95e-30 | 122 |
Msa0190800 | AT2G47860.2 | 29.794 | 339 | 195 | 6 | 77 | 377 | 48 | 381 | 5.95e-30 | 122 |
Msa0190800 | AT1G30440.1 | 28.784 | 403 | 240 | 9 | 1 | 358 | 94 | 494 | 7.81e-30 | 122 |
Msa0190800 | AT1G03010.3 | 27.187 | 423 | 249 | 10 | 1 | 377 | 98 | 507 | 9.47e-30 | 122 |
Msa0190800 | AT1G03010.2 | 27.187 | 423 | 249 | 10 | 1 | 377 | 72 | 481 | 1.02e-29 | 122 |
Msa0190800 | AT1G03010.1 | 27.187 | 423 | 249 | 10 | 1 | 377 | 99 | 508 | 1.41e-29 | 122 |
Msa0190800 | AT5G03250.2 | 27.676 | 383 | 230 | 9 | 36 | 375 | 15 | 393 | 5.62e-29 | 119 |
Msa0190800 | AT3G50840.2 | 30.318 | 409 | 244 | 10 | 5 | 388 | 52 | 444 | 1.34e-28 | 118 |
Msa0190800 | AT3G50840.3 | 30.318 | 409 | 244 | 10 | 5 | 388 | 52 | 444 | 1.34e-28 | 118 |
Msa0190800 | AT3G50840.1 | 29.630 | 405 | 252 | 9 | 5 | 388 | 88 | 480 | 1.94e-28 | 118 |
Msa0190800 | AT2G30520.2 | 26.478 | 389 | 224 | 10 | 2 | 358 | 49 | 407 | 1.28e-27 | 115 |
Msa0190800 | AT2G30520.3 | 26.478 | 389 | 224 | 10 | 2 | 358 | 49 | 407 | 1.28e-27 | 115 |
Msa0190800 | AT2G30520.1 | 26.478 | 389 | 224 | 10 | 2 | 358 | 97 | 455 | 1.62e-27 | 115 |
Msa0190800 | AT5G67385.4 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0190800 | AT5G67385.5 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0190800 | AT5G67385.2 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0190800 | AT5G67385.3 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0190800 | AT5G66560.2 | 31.111 | 360 | 202 | 9 | 1 | 322 | 129 | 480 | 4.82e-27 | 113 |
Msa0190800 | AT5G67385.1 | 26.817 | 399 | 251 | 11 | 2 | 374 | 93 | 476 | 6.05e-27 | 114 |
Msa0190800 | AT5G47800.3 | 26.579 | 380 | 239 | 9 | 8 | 361 | 100 | 465 | 1.03e-26 | 113 |
Msa0190800 | AT5G47800.1 | 26.579 | 380 | 239 | 9 | 8 | 361 | 100 | 465 | 1.03e-26 | 113 |
Msa0190800 | AT5G47800.4 | 26.579 | 380 | 239 | 9 | 8 | 361 | 100 | 465 | 1.03e-26 | 113 |
Msa0190800 | AT5G47800.2 | 26.579 | 380 | 239 | 9 | 8 | 361 | 213 | 578 | 1.88e-26 | 112 |
Msa0190800 | AT3G44820.1 | 24.205 | 409 | 254 | 8 | 1 | 358 | 92 | 495 | 2.14e-26 | 112 |
Msa0190800 | AT3G49970.1 | 27.838 | 370 | 212 | 11 | 2 | 354 | 60 | 391 | 3.57e-26 | 111 |
Msa0190800 | AT3G49970.2 | 27.838 | 370 | 212 | 11 | 2 | 354 | 60 | 391 | 3.57e-26 | 111 |
Msa0190800 | AT2G47860.4 | 29.444 | 360 | 201 | 9 | 1 | 322 | 100 | 444 | 6.45e-26 | 109 |
Msa0190800 | AT2G47860.6 | 29.444 | 360 | 201 | 9 | 1 | 322 | 123 | 467 | 7.09e-26 | 110 |
Msa0190800 | AT2G23050.1 | 26.230 | 366 | 231 | 8 | 3 | 358 | 100 | 436 | 1.22e-23 | 103 |
Msa0190800 | AT3G08660.2 | 28.448 | 348 | 205 | 8 | 2 | 329 | 100 | 423 | 1.52e-23 | 102 |
Msa0190800 | AT5G13600.1 | 25.298 | 419 | 256 | 12 | 1 | 375 | 91 | 496 | 1.68e-23 | 103 |
Msa0190800 | AT2G14820.2 | 24.416 | 385 | 257 | 8 | 3 | 358 | 95 | 474 | 1.23e-22 | 101 |
Msa0190800 | AT2G14820.1 | 24.416 | 385 | 257 | 8 | 3 | 358 | 95 | 474 | 1.23e-22 | 101 |
Msa0190800 | AT2G23050.2 | 27.586 | 290 | 186 | 6 | 79 | 358 | 45 | 320 | 1.46e-20 | 93.2 |
Msa0190800 | AT5G10250.2 | 28.444 | 225 | 136 | 5 | 173 | 379 | 296 | 513 | 7.50e-20 | 92.8 |
Msa0190800 | AT5G67440.3 | 25.995 | 377 | 246 | 11 | 3 | 358 | 98 | 462 | 1.85e-19 | 91.3 |
Msa0190800 | AT5G67440.1 | 25.995 | 377 | 246 | 11 | 3 | 358 | 98 | 462 | 1.85e-19 | 91.3 |
Msa0190800 | AT5G67440.2 | 25.995 | 377 | 246 | 11 | 3 | 358 | 61 | 425 | 2.41e-19 | 90.9 |
Msa0190800 | AT4G37590.1 | 25.613 | 367 | 241 | 10 | 3 | 358 | 106 | 451 | 5.74e-19 | 90.1 |
Msa0190800 | AT3G26490.1 | 25.225 | 444 | 274 | 13 | 1 | 395 | 95 | 529 | 8.59e-19 | 89.4 |
Msa0190800 | AT3G26490.3 | 25.225 | 444 | 274 | 13 | 1 | 395 | 95 | 529 | 8.59e-19 | 89.4 |
Msa0190800 | AT3G26490.4 | 25.225 | 444 | 274 | 13 | 1 | 395 | 95 | 529 | 8.59e-19 | 89.4 |
Msa0190800 | AT5G10250.1 | 28.505 | 214 | 135 | 5 | 173 | 379 | 296 | 498 | 2.24e-18 | 88.2 |
Msa0190800 | AT1G52770.1 | 32.292 | 192 | 117 | 3 | 189 | 373 | 119 | 304 | 1.15e-17 | 85.5 |
Msa0190800 | AT5G64330.1 | 30.198 | 202 | 109 | 3 | 189 | 358 | 390 | 591 | 1.42e-17 | 85.9 |
Msa0190800 | AT5G64330.3 | 30.198 | 202 | 109 | 3 | 189 | 358 | 331 | 532 | 1.59e-17 | 85.5 |
Msa0190800 | AT5G64330.2 | 30.198 | 202 | 109 | 3 | 189 | 358 | 390 | 591 | 1.78e-17 | 85.5 |
Msa0190800 | AT5G48130.1 | 25.000 | 360 | 251 | 9 | 7 | 358 | 107 | 455 | 1.87e-17 | 85.5 |
Msa0190800 | AT4G31820.2 | 22.798 | 386 | 242 | 11 | 3 | 358 | 42 | 401 | 1.54e-16 | 82.4 |
Msa0190800 | AT4G31820.1 | 22.798 | 386 | 242 | 11 | 3 | 358 | 95 | 454 | 1.74e-16 | 82.4 |
Msa0190800 | AT3G15570.1 | 33.333 | 177 | 105 | 3 | 189 | 358 | 124 | 294 | 1.98e-16 | 81.6 |
Msa0190800 | AT1G67900.5 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0190800 | AT1G67900.1 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0190800 | AT1G67900.3 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0190800 | AT1G67900.6 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0190800 | AT1G67900.2 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0190800 | AT1G67900.4 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0190800 | AT3G03510.1 | 24.722 | 449 | 266 | 16 | 1 | 427 | 20 | 418 | 9.75e-14 | 73.2 |
Find 73 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAGTTTCATATTTGTTTC+TGG | 0.163326 | 2_1:+6298685 | Msa0190800:three_prime_UTR |
AATAATCATGAACAAAATTT+TGG | 0.186168 | 2_1:-6298665 | None:intergenic |
CTTCTCTCATTGCTTGATAT+TGG | 0.269406 | 2_1:+6297281 | Msa0190800:CDS |
TAAGAGAGTTACTAAATTGA+TGG | 0.270336 | 2_1:+6297547 | Msa0190800:CDS |
ATCTTAACTTGAGTTGTGTT+GGG | 0.271399 | 2_1:+6297213 | Msa0190800:CDS |
CTTTGGAAGGAAATGATTCT+TGG | 0.276322 | 2_1:-6296911 | None:intergenic |
TGCGATTCCCTCGCAGCATC+TGG | 0.298927 | 2_1:-6297644 | None:intergenic |
GATAAAGAGGTATGGAGAAT+TGG | 0.308656 | 2_1:+6298562 | Msa0190800:CDS |
TGTTAAGATTGAGACGATTA+AGG | 0.322350 | 2_1:+6297247 | Msa0190800:CDS |
AACTTCTTTGACTCAATGTT+TGG | 0.334568 | 2_1:+6298497 | Msa0190800:CDS |
AATCTTAATCGAATTGCTAT+TGG | 0.350422 | 2_1:+6297329 | Msa0190800:CDS |
AAGAATTTCTAAGTAACCTT+TGG | 0.354279 | 2_1:-6296928 | None:intergenic |
AATATTAATTTATGAACAAT+TGG | 0.357226 | 2_1:+6296275 | Msa0190800:five_prime_UTR |
TATGCATGATCTTTCCCATT+TGG | 0.362344 | 2_1:-6297446 | None:intergenic |
AACAATATAGAAAGTCTTAT+AGG | 0.376145 | 2_1:+6297377 | Msa0190800:CDS |
TGCTTGTGTCACAAGAAAAC+TGG | 0.377089 | 2_1:-6297040 | None:intergenic |
TATCTTAACTTGAGTTGTGT+TGG | 0.389129 | 2_1:+6297212 | Msa0190800:CDS |
CTGGCTTGTGTAAAGAAGTC+AGG | 0.412840 | 2_1:+6298608 | Msa0190800:CDS |
GAAGGCTGGAGATGAGGATC+AGG | 0.415316 | 2_1:-6297593 | None:intergenic |
CTACTTCTTCCATCTCCAAA+TGG | 0.419857 | 2_1:+6297431 | Msa0190800:CDS |
TCCATATGAGGCTTCAAACT+TGG | 0.429267 | 2_1:-6296825 | None:intergenic |
TTGGACTTGGTTTGAACTCA+TGG | 0.448896 | 2_1:+6296872 | Msa0190800:CDS |
AGAAATTCTTGACAGAATCA+TGG | 0.453296 | 2_1:+6296941 | Msa0190800:CDS |
AATGGAATGTGGGACCCATC+TGG | 0.457405 | 2_1:+6298589 | Msa0190800:CDS |
GTTGAAGAGATAAAGAGGTA+TGG | 0.458167 | 2_1:+6298554 | Msa0190800:CDS |
ATTTGTTAGACAATGTCATA+AGG | 0.461079 | 2_1:+6297135 | Msa0190800:CDS |
ATTTAGTAACTCTCTTAACT+TGG | 0.462016 | 2_1:-6297541 | None:intergenic |
ACCAAGTTTGAAGCCTCATA+TGG | 0.471749 | 2_1:+6296824 | Msa0190800:CDS |
GTATGGAGAATTGGAAGGAA+TGG | 0.482357 | 2_1:+6298571 | Msa0190800:CDS |
AGGATGTTGAAGAGATAAAG+AGG | 0.487290 | 2_1:+6298549 | Msa0190800:CDS |
ATGCTTCAAATTCAGAAGGC+TGG | 0.488106 | 2_1:-6297607 | None:intergenic |
TATTGGATCAATTTCTTGCA+AGG | 0.490862 | 2_1:+6297298 | Msa0190800:CDS |
TACTTCTTCCATCTCCAAAT+GGG | 0.494724 | 2_1:+6297432 | Msa0190800:CDS |
TGTCTAGTGACATGAGCTCT+TGG | 0.498662 | 2_1:-6298431 | None:intergenic |
TCATGCAGGCATAGGTGAAA+AGG | 0.500065 | 2_1:+6298310 | Msa0190800:CDS |
AAGACATCTTACAAGAAACT+TGG | 0.503196 | 2_1:+6298388 | Msa0190800:CDS |
CAAGAACATAGATGTGAAAG+AGG | 0.507528 | 2_1:+6298529 | Msa0190800:CDS |
CAAGAATCATTTCCTTCCAA+AGG | 0.510512 | 2_1:+6296912 | Msa0190800:CDS |
CTGTTTGAAGAACATGTGTA+TGG | 0.510698 | 2_1:-6297008 | None:intergenic |
TCATAGGTTCATGCAGGCAT+AGG | 0.518428 | 2_1:+6298302 | Msa0190800:intron |
CTTCTTTACACAAGCCAGAT+GGG | 0.520558 | 2_1:-6298603 | None:intergenic |
GTCACAAGAAAACTGGAAGC+TGG | 0.528319 | 2_1:-6297033 | None:intergenic |
TCTTAACTTGAGTTGTGTTG+GGG | 0.536862 | 2_1:+6297214 | Msa0190800:CDS |
ATTTCTAAGTAACCTTTGGA+AGG | 0.544773 | 2_1:-6296924 | None:intergenic |
ATAACTTCTCTGAGGCTACA+TGG | 0.547407 | 2_1:+6297081 | Msa0190800:CDS |
TGATCTTTCCCATTTGGAGA+TGG | 0.548740 | 2_1:-6297440 | None:intergenic |
GAATTGGAAGGAATGGAATG+TGG | 0.550446 | 2_1:+6298578 | Msa0190800:CDS |
AGCCATGGACATGTATCTAA+AGG | 0.550561 | 2_1:+6297682 | Msa0190800:CDS |
ACTTCTTTACACAAGCCAGA+TGG | 0.554159 | 2_1:-6298604 | None:intergenic |
AAGTCTTATAGGTCCTCTGT+TGG | 0.561210 | 2_1:+6297388 | Msa0190800:CDS |
ATCAATGCTTCAAATTCAGA+AGG | 0.564510 | 2_1:-6297611 | None:intergenic |
TGGCTTGTGTAAAGAAGTCA+GGG | 0.569595 | 2_1:+6298609 | Msa0190800:CDS |
GCGATTCCCTCGCAGCATCT+GGG | 0.575559 | 2_1:-6297643 | None:intergenic |
AGAACATAGCATGGACACAT+TGG | 0.577656 | 2_1:-6296757 | None:intergenic |
TGATCAATTATACATAGCCA+TGG | 0.587189 | 2_1:+6297667 | Msa0190800:CDS |
TTTCTTGTGACATCTTCTCG+TGG | 0.587506 | 2_1:-6298361 | None:intergenic |
AGTTCTCCCAGATGCTGCGA+GGG | 0.592260 | 2_1:+6297637 | Msa0190800:CDS |
TACCTTTAGATACATGTCCA+TGG | 0.593742 | 2_1:-6297684 | None:intergenic |
AATTCAGAAGGCTGGAGATG+AGG | 0.594161 | 2_1:-6297599 | None:intergenic |
ACAAGCTTTCATTGTAAACA+AGG | 0.597814 | 2_1:+6296334 | Msa0190800:five_prime_UTR |
TTGCTACAATAGCAGCAGCA+TGG | 0.599645 | 2_1:+6296722 | Msa0190800:exon |
TTGAGCAGCAGAACATAGCA+TGG | 0.601035 | 2_1:-6296766 | None:intergenic |
TGGAGTTTGCTGTGAACTTG+AGG | 0.605340 | 2_1:+6296295 | Msa0190800:five_prime_UTR |
AAGAGGTATGGAGAATTGGA+AGG | 0.605606 | 2_1:+6298566 | Msa0190800:CDS |
AATTGGAAGGAATGGAATGT+GGG | 0.609226 | 2_1:+6298579 | Msa0190800:CDS |
ATTGATGGATTTGTTCCTTG+TGG | 0.613773 | 2_1:+6297562 | Msa0190800:CDS |
TATGGACTTGTAACAAGACA+TGG | 0.645211 | 2_1:-6296990 | None:intergenic |
CAGTTCTCCCAGATGCTGCG+AGG | 0.652508 | 2_1:+6297636 | Msa0190800:CDS |
GATCAGGAGCAACTTCCACA+AGG | 0.673647 | 2_1:-6297577 | None:intergenic |
CTTGAGAAATAACTTCTCTG+AGG | 0.684042 | 2_1:+6297073 | Msa0190800:CDS |
ATTGTTGCTTGATCCAACAG+AGG | 0.696020 | 2_1:-6297401 | None:intergenic |
ACTTCTCTGAGGCTACATGG+TGG | 0.749190 | 2_1:+6297084 | Msa0190800:CDS |
GGCTTGTGTAAAGAAGTCAG+GGG | 0.777448 | 2_1:+6298610 | Msa0190800:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTAATTTATGAACAAT+TGG | + | chr2_1:6296275-6296294 | Msa0190800:five_prime_UTR | 10.0% |
!! | AAAAATAAAAAATATCATCA+TGG | - | chr2_1:6296642-6296661 | None:intergenic | 10.0% |
!! | ATAATATTAAGAATAATAAG+GGG | - | chr2_1:6297785-6297804 | None:intergenic | 10.0% |
!! | GAATAATATTAAGAATAATA+AGG | - | chr2_1:6297787-6297806 | None:intergenic | 10.0% |
!!! | TTTGAAATAATAAATCATCA+GGG | - | chr2_1:6296576-6296595 | None:intergenic | 15.0% |
!!! | ATTTGAAATAATAAATCATC+AGG | - | chr2_1:6296577-6296596 | None:intergenic | 15.0% |
!!! | AATAATCATGAACAAAATTT+TGG | - | chr2_1:6298668-6298687 | None:intergenic | 15.0% |
!!! | TTCAAATTCTCAATCTTTTA+TGG | + | chr2_1:6296590-6296609 | Msa0190800:intron | 20.0% |
!! | ATGTGATAAAATTCATCATA+TGG | - | chr2_1:6296679-6296698 | None:intergenic | 20.0% |
!!! | ATATGGAAAATTTTCTTGAA+GGG | + | chr2_1:6296841-6296860 | Msa0190800:CDS | 20.0% |
!!! | AACAATATAGAAAGTCTTAT+AGG | + | chr2_1:6297377-6297396 | Msa0190800:CDS | 20.0% |
!!! | ATTGTACAAGATTTTAAGTT+AGG | + | chr2_1:6297751-6297770 | Msa0190800:intron | 20.0% |
!!! | ATTAGTTTCATATTTGTTTC+TGG | + | chr2_1:6298685-6298704 | Msa0190800:three_prime_UTR | 20.0% |
!!! | CTTGCAGTATTTTTTAATCA+TGG | - | chr2_1:6296461-6296480 | None:intergenic | 25.0% |
!! | TCAAGAAAATTTTCCATATG+AGG | - | chr2_1:6296840-6296859 | None:intergenic | 25.0% |
!! | CATATGGAAAATTTTCTTGA+AGG | + | chr2_1:6296840-6296859 | Msa0190800:CDS | 25.0% |
! | AAGAATTTCTAAGTAACCTT+TGG | - | chr2_1:6296931-6296950 | None:intergenic | 25.0% |
!! | ATTTGTTAGACAATGTCATA+AGG | + | chr2_1:6297135-6297154 | Msa0190800:CDS | 25.0% |
! | AATCTTAATCGAATTGCTAT+TGG | + | chr2_1:6297329-6297348 | Msa0190800:CDS | 25.0% |
!!! | ATGATGTTGATTTTGTCATA+AGG | + | chr2_1:6297468-6297487 | Msa0190800:CDS | 25.0% |
! | ATTTAGTAACTCTCTTAACT+TGG | - | chr2_1:6297544-6297563 | None:intergenic | 25.0% |
! | TAAGAGAGTTACTAAATTGA+TGG | + | chr2_1:6297547-6297566 | Msa0190800:CDS | 25.0% |
! | AATATCGTTATTTGTGATCT+AGG | - | chr2_1:6297866-6297885 | None:intergenic | 25.0% |
! | CAGCATAATTTATGATGAAA+TGG | - | chr2_1:6297898-6297917 | None:intergenic | 25.0% |
! | TGTGTTTAAAGACTATTGTT+CGG | - | chr2_1:6298045-6298064 | None:intergenic | 25.0% |
!!! | TTGTGTGCTATTTAAGTTTT+TGG | + | chr2_1:6298195-6298214 | Msa0190800:intron | 25.0% |
!! | TTCCACTGATAAATTTTCAT+AGG | + | chr2_1:6298286-6298305 | Msa0190800:intron | 25.0% |
! | AACCTATGAAAATTTATCAG+TGG | - | chr2_1:6298291-6298310 | None:intergenic | 25.0% |
ACAAGCTTTCATTGTAAACA+AGG | + | chr2_1:6296334-6296353 | Msa0190800:five_prime_UTR | 30.0% | |
TACAAAACCCATCATCATTA+TGG | + | chr2_1:6296502-6296521 | Msa0190800:intron | 30.0% | |
AACATTAATAATGCACTTCG+TGG | - | chr2_1:6296531-6296550 | None:intergenic | 30.0% | |
! | ATGCCTTTGAGTTCATAATT+AGG | + | chr2_1:6296697-6296716 | Msa0190800:intron | 30.0% |
AAGCCTAATTATGAACTCAA+AGG | - | chr2_1:6296703-6296722 | None:intergenic | 30.0% | |
ATTTCTAAGTAACCTTTGGA+AGG | - | chr2_1:6296927-6296946 | None:intergenic | 30.0% | |
AGAAATTCTTGACAGAATCA+TGG | + | chr2_1:6296941-6296960 | Msa0190800:CDS | 30.0% | |
! | TATCTTAACTTGAGTTGTGT+TGG | + | chr2_1:6297212-6297231 | Msa0190800:CDS | 30.0% |
! | ATCTTAACTTGAGTTGTGTT+GGG | + | chr2_1:6297213-6297232 | Msa0190800:CDS | 30.0% |
TGTTAAGATTGAGACGATTA+AGG | + | chr2_1:6297247-6297266 | Msa0190800:CDS | 30.0% | |
TATTGGATCAATTTCTTGCA+AGG | + | chr2_1:6297298-6297317 | Msa0190800:CDS | 30.0% | |
!!! | CTCGTGAAGATTTTTTTGTT+AGG | + | chr2_1:6297491-6297510 | Msa0190800:CDS | 30.0% |
!!! | GTGAAGATTTTTTTGTTAGG+AGG | + | chr2_1:6297494-6297513 | Msa0190800:CDS | 30.0% |
!!! | AAGATTTTTTTGTTAGGAGG+AGG | + | chr2_1:6297497-6297516 | Msa0190800:CDS | 30.0% |
ATCAATGCTTCAAATTCAGA+AGG | - | chr2_1:6297614-6297633 | None:intergenic | 30.0% | |
TGATCAATTATACATAGCCA+TGG | + | chr2_1:6297667-6297686 | Msa0190800:CDS | 30.0% | |
ATTATCTTGAAACCATACCA+CGG | - | chr2_1:6298014-6298033 | None:intergenic | 30.0% | |
! | TATCTGTTTTCTTTCGAATG+AGG | + | chr2_1:6298218-6298237 | Msa0190800:intron | 30.0% |
! | AAATTTTCATAGGTTCATGC+AGG | + | chr2_1:6298296-6298315 | Msa0190800:intron | 30.0% |
AAGACATCTTACAAGAAACT+TGG | + | chr2_1:6298388-6298407 | Msa0190800:CDS | 30.0% | |
AACTTCTTTGACTCAATGTT+TGG | + | chr2_1:6298497-6298516 | Msa0190800:CDS | 30.0% | |
GTGACAACTTATCATTGTGT+TGG | - | chr2_1:6296420-6296439 | None:intergenic | 35.0% | |
!!! | TGATGATGGGTTTTGTAAGA+AGG | - | chr2_1:6296499-6296518 | None:intergenic | 35.0% |
GTGGAATCCATAATGATGAT+GGG | - | chr2_1:6296512-6296531 | None:intergenic | 35.0% | |
! | ATGTTCTGCTGCTCAATTTT+TGG | + | chr2_1:6296773-6296792 | Msa0190800:CDS | 35.0% |
! | TTCTTGAAGGGATTCGTTTT+TGG | + | chr2_1:6296853-6296872 | Msa0190800:CDS | 35.0% |
! | CTTTGGAAGGAAATGATTCT+TGG | - | chr2_1:6296914-6296933 | None:intergenic | 35.0% |
CAAGAATCATTTCCTTCCAA+AGG | + | chr2_1:6296912-6296931 | Msa0190800:CDS | 35.0% | |
TATGGACTTGTAACAAGACA+TGG | - | chr2_1:6296993-6297012 | None:intergenic | 35.0% | |
CTGTTTGAAGAACATGTGTA+TGG | - | chr2_1:6297011-6297030 | None:intergenic | 35.0% | |
CTTGAGAAATAACTTCTCTG+AGG | + | chr2_1:6297073-6297092 | Msa0190800:CDS | 35.0% | |
! | TCTTAACTTGAGTTGTGTTG+GGG | + | chr2_1:6297214-6297233 | Msa0190800:CDS | 35.0% |
CTTCTCTCATTGCTTGATAT+TGG | + | chr2_1:6297281-6297300 | Msa0190800:CDS | 35.0% | |
TACTTCTTCCATCTCCAAAT+GGG | + | chr2_1:6297432-6297451 | Msa0190800:CDS | 35.0% | |
TATGCATGATCTTTCCCATT+TGG | - | chr2_1:6297449-6297468 | None:intergenic | 35.0% | |
!! | ATTGATGGATTTGTTCCTTG+TGG | + | chr2_1:6297562-6297581 | Msa0190800:CDS | 35.0% |
TACCTTTAGATACATGTCCA+TGG | - | chr2_1:6297687-6297706 | None:intergenic | 35.0% | |
TTATCTTGAAACCATACCAC+GGG | - | chr2_1:6298013-6298032 | None:intergenic | 35.0% | |
CTACATCTCTGACTACATAT+TGG | - | chr2_1:6298146-6298165 | None:intergenic | 35.0% | |
CAATATGTAGTCAGAGATGT+AGG | + | chr2_1:6298144-6298163 | Msa0190800:intron | 35.0% | |
TAGCACACAAGATTTGATCA+CGG | - | chr2_1:6298185-6298204 | None:intergenic | 35.0% | |
CAAGAACATAGATGTGAAAG+AGG | + | chr2_1:6298529-6298548 | Msa0190800:CDS | 35.0% | |
AGGATGTTGAAGAGATAAAG+AGG | + | chr2_1:6298549-6298568 | Msa0190800:CDS | 35.0% | |
GTTGAAGAGATAAAGAGGTA+TGG | + | chr2_1:6298554-6298573 | Msa0190800:CDS | 35.0% | |
! | GATAAAGAGGTATGGAGAAT+TGG | + | chr2_1:6298562-6298581 | Msa0190800:CDS | 35.0% |
AATTGGAAGGAATGGAATGT+GGG | + | chr2_1:6298579-6298598 | Msa0190800:CDS | 35.0% | |
CGTGGAATCCATAATGATGA+TGG | - | chr2_1:6296513-6296532 | None:intergenic | 40.0% | |
AGAACATAGCATGGACACAT+TGG | - | chr2_1:6296760-6296779 | None:intergenic | 40.0% | |
!! | TGCTGCTCAATTTTTGGAGA+TGG | + | chr2_1:6296779-6296798 | Msa0190800:CDS | 40.0% |
! | ACCAAGTTTGAAGCCTCATA+TGG | + | chr2_1:6296824-6296843 | Msa0190800:CDS | 40.0% |
TCCATATGAGGCTTCAAACT+TGG | - | chr2_1:6296828-6296847 | None:intergenic | 40.0% | |
!! | AAGGGATTCGTTTTTGGACT+TGG | + | chr2_1:6296859-6296878 | Msa0190800:CDS | 40.0% |
! | TTGGACTTGGTTTGAACTCA+TGG | + | chr2_1:6296872-6296891 | Msa0190800:CDS | 40.0% |
TGCTTGTGTCACAAGAAAAC+TGG | - | chr2_1:6297043-6297062 | None:intergenic | 40.0% | |
!! | ATAACTTCTCTGAGGCTACA+TGG | + | chr2_1:6297081-6297100 | Msa0190800:CDS | 40.0% |
! | AAGTCTTATAGGTCCTCTGT+TGG | + | chr2_1:6297388-6297407 | Msa0190800:CDS | 40.0% |
! | ATTGTTGCTTGATCCAACAG+AGG | - | chr2_1:6297404-6297423 | None:intergenic | 40.0% |
CTACTTCTTCCATCTCCAAA+TGG | + | chr2_1:6297431-6297450 | Msa0190800:CDS | 40.0% | |
TGATCTTTCCCATTTGGAGA+TGG | - | chr2_1:6297443-6297462 | None:intergenic | 40.0% | |
ATGCTTCAAATTCAGAAGGC+TGG | - | chr2_1:6297610-6297629 | None:intergenic | 40.0% | |
AGCCATGGACATGTATCTAA+AGG | + | chr2_1:6297682-6297701 | Msa0190800:CDS | 40.0% | |
! | GTGATCTAGGCCATAGTTTT+AGG | - | chr2_1:6297853-6297872 | None:intergenic | 40.0% |
TCTACTTCTAGCCTGATAAG+CGG | + | chr2_1:6297963-6297982 | Msa0190800:intron | 40.0% | |
TATCTTGAAACCATACCACG+GGG | - | chr2_1:6298012-6298031 | None:intergenic | 40.0% | |
TTTCTTGTGACATCTTCTCG+TGG | - | chr2_1:6298364-6298383 | None:intergenic | 40.0% | |
!!! | GCTCTTGGTTTTGTTTCTGA+AGG | - | chr2_1:6298419-6298438 | None:intergenic | 40.0% |
! | AAGAGGTATGGAGAATTGGA+AGG | + | chr2_1:6298566-6298585 | Msa0190800:CDS | 40.0% |
GTATGGAGAATTGGAAGGAA+TGG | + | chr2_1:6298571-6298590 | Msa0190800:CDS | 40.0% | |
GAATTGGAAGGAATGGAATG+TGG | + | chr2_1:6298578-6298597 | Msa0190800:CDS | 40.0% | |
CTTCTTTACACAAGCCAGAT+GGG | - | chr2_1:6298606-6298625 | None:intergenic | 40.0% | |
ACTTCTTTACACAAGCCAGA+TGG | - | chr2_1:6298607-6298626 | None:intergenic | 40.0% | |
! | TGGCTTGTGTAAAGAAGTCA+GGG | + | chr2_1:6298609-6298628 | Msa0190800:CDS | 40.0% |
!! | TGGAGTTTGCTGTGAACTTG+AGG | + | chr2_1:6296295-6296314 | Msa0190800:five_prime_UTR | 45.0% |
TACTGCAAGCATGTCACAAG+TGG | + | chr2_1:6296472-6296491 | Msa0190800:intron | 45.0% | |
TTGCTACAATAGCAGCAGCA+TGG | + | chr2_1:6296722-6296741 | Msa0190800:exon | 45.0% | |
TTGAGCAGCAGAACATAGCA+TGG | - | chr2_1:6296769-6296788 | None:intergenic | 45.0% | |
GTCACAAGAAAACTGGAAGC+TGG | - | chr2_1:6297036-6297055 | None:intergenic | 45.0% | |
AATTCAGAAGGCTGGAGATG+AGG | - | chr2_1:6297602-6297621 | None:intergenic | 45.0% | |
CGCAGACACACCTAAAACTA+TGG | + | chr2_1:6297840-6297859 | Msa0190800:intron | 45.0% | |
CTACTTCTAGCCTGATAAGC+GGG | + | chr2_1:6297964-6297983 | Msa0190800:intron | 45.0% | |
ATCTTGAAACCATACCACGG+GGG | - | chr2_1:6298011-6298030 | None:intergenic | 45.0% | |
AGTCAGAGATGTAGGCACAT+TGG | + | chr2_1:6298152-6298171 | Msa0190800:intron | 45.0% | |
TCATAGGTTCATGCAGGCAT+AGG | + | chr2_1:6298302-6298321 | Msa0190800:intron | 45.0% | |
TCATGCAGGCATAGGTGAAA+AGG | + | chr2_1:6298310-6298329 | Msa0190800:CDS | 45.0% | |
TGTCTAGTGACATGAGCTCT+TGG | - | chr2_1:6298434-6298453 | None:intergenic | 45.0% | |
! | CTGGCTTGTGTAAAGAAGTC+AGG | + | chr2_1:6298608-6298627 | Msa0190800:CDS | 45.0% |
GGCTTGTGTAAAGAAGTCAG+GGG | + | chr2_1:6298610-6298629 | Msa0190800:CDS | 45.0% | |
!!! | ATGATATTTTTTATTTTTTT+TGG | + | chr2_1:6296644-6296663 | Msa0190800:intron | 5.0% |
!! | AATAATATTAAGAATAATAA+GGG | - | chr2_1:6297786-6297805 | None:intergenic | 5.0% |
!! | ACTTCTCTGAGGCTACATGG+TGG | + | chr2_1:6297084-6297103 | Msa0190800:CDS | 50.0% |
GATCAGGAGCAACTTCCACA+AGG | - | chr2_1:6297580-6297599 | None:intergenic | 50.0% | |
ATTGGAAATCCCCCGTGGTA+TGG | + | chr2_1:6297999-6298018 | Msa0190800:intron | 50.0% | |
AATGGAATGTGGGACCCATC+TGG | + | chr2_1:6298589-6298608 | Msa0190800:CDS | 50.0% | |
GAAGGCTGGAGATGAGGATC+AGG | - | chr2_1:6297596-6297615 | None:intergenic | 55.0% | |
AGTTCTCCCAGATGCTGCGA+GGG | + | chr2_1:6297637-6297656 | Msa0190800:CDS | 55.0% | |
CAGTTCTCCCAGATGCTGCG+AGG | + | chr2_1:6297636-6297655 | Msa0190800:CDS | 60.0% | |
GCGATTCCCTCGCAGCATCT+GGG | - | chr2_1:6297646-6297665 | None:intergenic | 60.0% | |
TGCGATTCCCTCGCAGCATC+TGG | - | chr2_1:6297647-6297666 | None:intergenic | 60.0% | |
GCGTGACAAGCCCGCTTATC+AGG | - | chr2_1:6297977-6297996 | None:intergenic | 60.0% | |
! | AGCGGGCTTGTCACGCGAAT+TGG | + | chr2_1:6297981-6298000 | Msa0190800:intron | 60.0% |
CGCGAATTGGAAATCCCCCG+TGG | + | chr2_1:6297994-6298013 | Msa0190800:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 6296273 | 6298732 | 6296273 | ID=Msa0190800;Name=Msa0190800 |
chr2_1 | mRNA | 6296273 | 6298732 | 6296273 | ID=Msa0190800-mRNA-1;Parent=Msa0190800;Name=Msa0190800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0|0.33|3|50|445 |
chr2_1 | exon | 6296273 | 6296355 | 6296273 | ID=Msa0190800-mRNA-1:exon:2851;Parent=Msa0190800-mRNA-1 |
chr2_1 | exon | 6296719 | 6297703 | 6296719 | ID=Msa0190800-mRNA-1:exon:2852;Parent=Msa0190800-mRNA-1 |
chr2_1 | exon | 6298308 | 6298732 | 6298308 | ID=Msa0190800-mRNA-1:exon:2853;Parent=Msa0190800-mRNA-1 |
chr2_1 | five_prime_UTR | 6296273 | 6296355 | 6296273 | ID=Msa0190800-mRNA-1:five_prime_utr;Parent=Msa0190800-mRNA-1 |
chr2_1 | five_prime_UTR | 6296719 | 6296740 | 6296719 | ID=Msa0190800-mRNA-1:five_prime_utr;Parent=Msa0190800-mRNA-1 |
chr2_1 | CDS | 6296741 | 6297703 | 6296741 | ID=Msa0190800-mRNA-1:cds;Parent=Msa0190800-mRNA-1 |
chr2_1 | CDS | 6298308 | 6298682 | 6298308 | ID=Msa0190800-mRNA-1:cds;Parent=Msa0190800-mRNA-1 |
chr2_1 | three_prime_UTR | 6298683 | 6298732 | 6298683 | ID=Msa0190800-mRNA-1:three_prime_utr;Parent=Msa0190800-mRNA-1 |
Gene Sequence |
Protein sequence |