AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190800 MtrunA17_Chr2g0280541 95.730 445 19 0 1 445 1 445 0.0 880
Msa0190800 MtrunA17_Chr4g0023801 37.214 481 254 12 3 445 75 545 2.82e-94 294
Msa0190800 MtrunA17_Chr4g0037661 28.429 401 256 8 1 375 74 469 2.06e-43 160
Msa0190800 MtrunA17_Chr1g0163311 29.557 406 241 12 1 373 67 460 1.19e-42 157
Msa0190800 MtrunA17_Chr1g0195911 27.739 429 259 7 1 393 102 515 3.71e-36 140
Msa0190800 MtrunA17_Chr8g0374011 30.424 401 230 7 1 358 106 500 1.70e-35 139
Msa0190800 MtrunA17_Chr1g0199631 30.633 395 230 10 1 358 57 444 2.88e-34 134
Msa0190800 MtrunA17_Chr1g0191711 27.763 371 222 9 2 358 129 467 1.90e-33 132
Msa0190800 MtrunA17_Chr2g0320691 26.700 397 247 9 1 358 91 482 3.09e-33 132
Msa0190800 MtrunA17_Chr2g0303541 28.288 403 238 8 1 358 93 489 5.25e-33 131
Msa0190800 MtrunA17_Chr4g0010091 28.173 394 229 8 2 358 101 477 1.22e-32 130
Msa0190800 MtrunA17_Chr2g0279481 26.477 457 258 12 1 385 110 560 1.50e-32 130
Msa0190800 MtrunA17_Chr8g0382231 24.062 453 263 11 1 401 119 542 1.03e-31 127
Msa0190800 MtrunA17_Chr4g0050021 25.607 453 272 8 1 391 110 559 2.44e-31 127
Msa0190800 MtrunA17_Chr7g0268781 26.606 436 258 11 1 393 102 518 3.17e-31 126
Msa0190800 MtrunA17_Chr7g0245201 29.227 414 229 12 2 374 129 519 2.81e-30 123
Msa0190800 MtrunA17_Chr5g0401341 27.968 379 247 9 3 358 94 469 7.73e-29 119
Msa0190800 MtrunA17_Chr2g0285511 28.058 417 249 12 1 375 94 501 2.37e-28 117
Msa0190800 MtrunA17_Chr1g0207461 25.907 386 251 9 3 359 96 475 6.92e-27 113
Msa0190800 MtrunA17_Chr4g0076521 26.121 379 241 12 8 361 100 464 2.00e-26 112
Msa0190800 MtrunA17_Chr5g0401451 25.806 403 255 11 2 374 107 495 2.61e-26 112
Msa0190800 MtrunA17_Chr3g0108331 26.667 390 219 12 2 358 91 446 2.32e-25 108
Msa0190800 MtrunA17_Chr4g0053841 25.935 401 254 9 2 374 82 467 1.71e-24 106
Msa0190800 MtrunA17_Chr1g0150191 26.943 386 250 9 1 358 93 474 4.41e-24 105
Msa0190800 MtrunA17_Chr5g0432861 25.313 399 222 11 2 358 92 456 4.40e-23 102
Msa0190800 MtrunA17_Chr1g0181181 25.581 473 268 15 1 420 94 535 1.23e-22 100
Msa0190800 MtrunA17_Chr2g0332281 30.153 262 152 7 122 358 24 279 2.55e-21 95.9
Msa0190800 MtrunA17_Chr4g0003891 28.159 277 181 6 114 373 39 314 5.03e-20 92.0
Msa0190800 MtrunA17_Chr5g0412591 27.195 353 191 9 67 358 128 475 6.45e-20 92.4
Msa0190800 MtrunA17_Chr2g0290741 25.654 382 229 13 8 361 100 454 6.15e-19 89.4
Msa0190800 MtrunA17_Chr8g0367891 23.704 405 235 11 1 358 93 470 2.66e-16 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190800 AT3G22104.4 40.947 359 193 4 6 359 3 347 8.38e-86 269
Msa0190800 AT3G22104.2 40.947 359 193 4 6 359 3 347 8.38e-86 269
Msa0190800 AT3G22104.3 40.947 359 193 4 6 359 3 347 8.38e-86 269
Msa0190800 AT3G22104.1 40.947 359 193 4 6 359 78 422 1.11e-84 269
Msa0190800 AT3G19850.1 29.723 397 233 9 6 370 81 463 5.99e-47 170
Msa0190800 AT3G08570.1 28.922 408 243 9 2 377 103 495 5.61e-35 137
Msa0190800 AT5G48800.1 29.412 374 236 7 2 358 108 470 6.42e-35 137
Msa0190800 AT2G47860.1 28.675 415 243 9 1 377 100 499 2.06e-33 133
Msa0190800 AT1G50280.2 28.351 388 249 9 6 369 48 430 2.28e-33 131
Msa0190800 AT5G66560.4 30.556 396 229 9 1 358 90 477 2.92e-33 132
Msa0190800 AT1G50280.1 28.351 388 249 9 6 369 81 463 3.03e-33 131
Msa0190800 AT5G03250.1 28.469 418 250 10 1 375 94 505 3.14e-33 132
Msa0190800 AT2G47860.3 28.675 415 243 9 1 377 123 522 3.47e-33 132
Msa0190800 AT5G66560.1 30.556 396 229 9 1 358 129 516 3.62e-33 132
Msa0190800 AT5G66560.3 30.556 396 229 9 1 358 100 487 4.46e-33 132
Msa0190800 AT3G08660.3 28.788 396 238 8 2 377 40 411 5.39e-32 128
Msa0190800 AT3G08660.1 28.788 396 238 8 2 377 100 471 1.09e-31 127
Msa0190800 AT2G47860.5 29.794 339 195 6 77 377 48 381 5.95e-30 122
Msa0190800 AT2G47860.2 29.794 339 195 6 77 377 48 381 5.95e-30 122
Msa0190800 AT1G30440.1 28.784 403 240 9 1 358 94 494 7.81e-30 122
Msa0190800 AT1G03010.3 27.187 423 249 10 1 377 98 507 9.47e-30 122
Msa0190800 AT1G03010.2 27.187 423 249 10 1 377 72 481 1.02e-29 122
Msa0190800 AT1G03010.1 27.187 423 249 10 1 377 99 508 1.41e-29 122
Msa0190800 AT5G03250.2 27.676 383 230 9 36 375 15 393 5.62e-29 119
Msa0190800 AT3G50840.2 30.318 409 244 10 5 388 52 444 1.34e-28 118
Msa0190800 AT3G50840.3 30.318 409 244 10 5 388 52 444 1.34e-28 118
Msa0190800 AT3G50840.1 29.630 405 252 9 5 388 88 480 1.94e-28 118
Msa0190800 AT2G30520.2 26.478 389 224 10 2 358 49 407 1.28e-27 115
Msa0190800 AT2G30520.3 26.478 389 224 10 2 358 49 407 1.28e-27 115
Msa0190800 AT2G30520.1 26.478 389 224 10 2 358 97 455 1.62e-27 115
Msa0190800 AT5G67385.4 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0190800 AT5G67385.5 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0190800 AT5G67385.2 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0190800 AT5G67385.3 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0190800 AT5G66560.2 31.111 360 202 9 1 322 129 480 4.82e-27 113
Msa0190800 AT5G67385.1 26.817 399 251 11 2 374 93 476 6.05e-27 114
Msa0190800 AT5G47800.3 26.579 380 239 9 8 361 100 465 1.03e-26 113
Msa0190800 AT5G47800.1 26.579 380 239 9 8 361 100 465 1.03e-26 113
Msa0190800 AT5G47800.4 26.579 380 239 9 8 361 100 465 1.03e-26 113
Msa0190800 AT5G47800.2 26.579 380 239 9 8 361 213 578 1.88e-26 112
Msa0190800 AT3G44820.1 24.205 409 254 8 1 358 92 495 2.14e-26 112
Msa0190800 AT3G49970.1 27.838 370 212 11 2 354 60 391 3.57e-26 111
Msa0190800 AT3G49970.2 27.838 370 212 11 2 354 60 391 3.57e-26 111
Msa0190800 AT2G47860.4 29.444 360 201 9 1 322 100 444 6.45e-26 109
Msa0190800 AT2G47860.6 29.444 360 201 9 1 322 123 467 7.09e-26 110
Msa0190800 AT2G23050.1 26.230 366 231 8 3 358 100 436 1.22e-23 103
Msa0190800 AT3G08660.2 28.448 348 205 8 2 329 100 423 1.52e-23 102
Msa0190800 AT5G13600.1 25.298 419 256 12 1 375 91 496 1.68e-23 103
Msa0190800 AT2G14820.2 24.416 385 257 8 3 358 95 474 1.23e-22 101
Msa0190800 AT2G14820.1 24.416 385 257 8 3 358 95 474 1.23e-22 101
Msa0190800 AT2G23050.2 27.586 290 186 6 79 358 45 320 1.46e-20 93.2
Msa0190800 AT5G10250.2 28.444 225 136 5 173 379 296 513 7.50e-20 92.8
Msa0190800 AT5G67440.3 25.995 377 246 11 3 358 98 462 1.85e-19 91.3
Msa0190800 AT5G67440.1 25.995 377 246 11 3 358 98 462 1.85e-19 91.3
Msa0190800 AT5G67440.2 25.995 377 246 11 3 358 61 425 2.41e-19 90.9
Msa0190800 AT4G37590.1 25.613 367 241 10 3 358 106 451 5.74e-19 90.1
Msa0190800 AT3G26490.1 25.225 444 274 13 1 395 95 529 8.59e-19 89.4
Msa0190800 AT3G26490.3 25.225 444 274 13 1 395 95 529 8.59e-19 89.4
Msa0190800 AT3G26490.4 25.225 444 274 13 1 395 95 529 8.59e-19 89.4
Msa0190800 AT5G10250.1 28.505 214 135 5 173 379 296 498 2.24e-18 88.2
Msa0190800 AT1G52770.1 32.292 192 117 3 189 373 119 304 1.15e-17 85.5
Msa0190800 AT5G64330.1 30.198 202 109 3 189 358 390 591 1.42e-17 85.9
Msa0190800 AT5G64330.3 30.198 202 109 3 189 358 331 532 1.59e-17 85.5
Msa0190800 AT5G64330.2 30.198 202 109 3 189 358 390 591 1.78e-17 85.5
Msa0190800 AT5G48130.1 25.000 360 251 9 7 358 107 455 1.87e-17 85.5
Msa0190800 AT4G31820.2 22.798 386 242 11 3 358 42 401 1.54e-16 82.4
Msa0190800 AT4G31820.1 22.798 386 242 11 3 358 95 454 1.74e-16 82.4
Msa0190800 AT3G15570.1 33.333 177 105 3 189 358 124 294 1.98e-16 81.6
Msa0190800 AT1G67900.5 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0190800 AT1G67900.1 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0190800 AT1G67900.3 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0190800 AT1G67900.6 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0190800 AT1G67900.2 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0190800 AT1G67900.4 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0190800 AT3G03510.1 24.722 449 266 16 1 427 20 418 9.75e-14 73.2

Find 73 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTTTCATATTTGTTTC+TGG 0.163326 2_1:+6298685 Msa0190800:three_prime_UTR
AATAATCATGAACAAAATTT+TGG 0.186168 2_1:-6298665 None:intergenic
CTTCTCTCATTGCTTGATAT+TGG 0.269406 2_1:+6297281 Msa0190800:CDS
TAAGAGAGTTACTAAATTGA+TGG 0.270336 2_1:+6297547 Msa0190800:CDS
ATCTTAACTTGAGTTGTGTT+GGG 0.271399 2_1:+6297213 Msa0190800:CDS
CTTTGGAAGGAAATGATTCT+TGG 0.276322 2_1:-6296911 None:intergenic
TGCGATTCCCTCGCAGCATC+TGG 0.298927 2_1:-6297644 None:intergenic
GATAAAGAGGTATGGAGAAT+TGG 0.308656 2_1:+6298562 Msa0190800:CDS
TGTTAAGATTGAGACGATTA+AGG 0.322350 2_1:+6297247 Msa0190800:CDS
AACTTCTTTGACTCAATGTT+TGG 0.334568 2_1:+6298497 Msa0190800:CDS
AATCTTAATCGAATTGCTAT+TGG 0.350422 2_1:+6297329 Msa0190800:CDS
AAGAATTTCTAAGTAACCTT+TGG 0.354279 2_1:-6296928 None:intergenic
AATATTAATTTATGAACAAT+TGG 0.357226 2_1:+6296275 Msa0190800:five_prime_UTR
TATGCATGATCTTTCCCATT+TGG 0.362344 2_1:-6297446 None:intergenic
AACAATATAGAAAGTCTTAT+AGG 0.376145 2_1:+6297377 Msa0190800:CDS
TGCTTGTGTCACAAGAAAAC+TGG 0.377089 2_1:-6297040 None:intergenic
TATCTTAACTTGAGTTGTGT+TGG 0.389129 2_1:+6297212 Msa0190800:CDS
CTGGCTTGTGTAAAGAAGTC+AGG 0.412840 2_1:+6298608 Msa0190800:CDS
GAAGGCTGGAGATGAGGATC+AGG 0.415316 2_1:-6297593 None:intergenic
CTACTTCTTCCATCTCCAAA+TGG 0.419857 2_1:+6297431 Msa0190800:CDS
TCCATATGAGGCTTCAAACT+TGG 0.429267 2_1:-6296825 None:intergenic
TTGGACTTGGTTTGAACTCA+TGG 0.448896 2_1:+6296872 Msa0190800:CDS
AGAAATTCTTGACAGAATCA+TGG 0.453296 2_1:+6296941 Msa0190800:CDS
AATGGAATGTGGGACCCATC+TGG 0.457405 2_1:+6298589 Msa0190800:CDS
GTTGAAGAGATAAAGAGGTA+TGG 0.458167 2_1:+6298554 Msa0190800:CDS
ATTTGTTAGACAATGTCATA+AGG 0.461079 2_1:+6297135 Msa0190800:CDS
ATTTAGTAACTCTCTTAACT+TGG 0.462016 2_1:-6297541 None:intergenic
ACCAAGTTTGAAGCCTCATA+TGG 0.471749 2_1:+6296824 Msa0190800:CDS
GTATGGAGAATTGGAAGGAA+TGG 0.482357 2_1:+6298571 Msa0190800:CDS
AGGATGTTGAAGAGATAAAG+AGG 0.487290 2_1:+6298549 Msa0190800:CDS
ATGCTTCAAATTCAGAAGGC+TGG 0.488106 2_1:-6297607 None:intergenic
TATTGGATCAATTTCTTGCA+AGG 0.490862 2_1:+6297298 Msa0190800:CDS
TACTTCTTCCATCTCCAAAT+GGG 0.494724 2_1:+6297432 Msa0190800:CDS
TGTCTAGTGACATGAGCTCT+TGG 0.498662 2_1:-6298431 None:intergenic
TCATGCAGGCATAGGTGAAA+AGG 0.500065 2_1:+6298310 Msa0190800:CDS
AAGACATCTTACAAGAAACT+TGG 0.503196 2_1:+6298388 Msa0190800:CDS
CAAGAACATAGATGTGAAAG+AGG 0.507528 2_1:+6298529 Msa0190800:CDS
CAAGAATCATTTCCTTCCAA+AGG 0.510512 2_1:+6296912 Msa0190800:CDS
CTGTTTGAAGAACATGTGTA+TGG 0.510698 2_1:-6297008 None:intergenic
TCATAGGTTCATGCAGGCAT+AGG 0.518428 2_1:+6298302 Msa0190800:intron
CTTCTTTACACAAGCCAGAT+GGG 0.520558 2_1:-6298603 None:intergenic
GTCACAAGAAAACTGGAAGC+TGG 0.528319 2_1:-6297033 None:intergenic
TCTTAACTTGAGTTGTGTTG+GGG 0.536862 2_1:+6297214 Msa0190800:CDS
ATTTCTAAGTAACCTTTGGA+AGG 0.544773 2_1:-6296924 None:intergenic
ATAACTTCTCTGAGGCTACA+TGG 0.547407 2_1:+6297081 Msa0190800:CDS
TGATCTTTCCCATTTGGAGA+TGG 0.548740 2_1:-6297440 None:intergenic
GAATTGGAAGGAATGGAATG+TGG 0.550446 2_1:+6298578 Msa0190800:CDS
AGCCATGGACATGTATCTAA+AGG 0.550561 2_1:+6297682 Msa0190800:CDS
ACTTCTTTACACAAGCCAGA+TGG 0.554159 2_1:-6298604 None:intergenic
AAGTCTTATAGGTCCTCTGT+TGG 0.561210 2_1:+6297388 Msa0190800:CDS
ATCAATGCTTCAAATTCAGA+AGG 0.564510 2_1:-6297611 None:intergenic
TGGCTTGTGTAAAGAAGTCA+GGG 0.569595 2_1:+6298609 Msa0190800:CDS
GCGATTCCCTCGCAGCATCT+GGG 0.575559 2_1:-6297643 None:intergenic
AGAACATAGCATGGACACAT+TGG 0.577656 2_1:-6296757 None:intergenic
TGATCAATTATACATAGCCA+TGG 0.587189 2_1:+6297667 Msa0190800:CDS
TTTCTTGTGACATCTTCTCG+TGG 0.587506 2_1:-6298361 None:intergenic
AGTTCTCCCAGATGCTGCGA+GGG 0.592260 2_1:+6297637 Msa0190800:CDS
TACCTTTAGATACATGTCCA+TGG 0.593742 2_1:-6297684 None:intergenic
AATTCAGAAGGCTGGAGATG+AGG 0.594161 2_1:-6297599 None:intergenic
ACAAGCTTTCATTGTAAACA+AGG 0.597814 2_1:+6296334 Msa0190800:five_prime_UTR
TTGCTACAATAGCAGCAGCA+TGG 0.599645 2_1:+6296722 Msa0190800:exon
TTGAGCAGCAGAACATAGCA+TGG 0.601035 2_1:-6296766 None:intergenic
TGGAGTTTGCTGTGAACTTG+AGG 0.605340 2_1:+6296295 Msa0190800:five_prime_UTR
AAGAGGTATGGAGAATTGGA+AGG 0.605606 2_1:+6298566 Msa0190800:CDS
AATTGGAAGGAATGGAATGT+GGG 0.609226 2_1:+6298579 Msa0190800:CDS
ATTGATGGATTTGTTCCTTG+TGG 0.613773 2_1:+6297562 Msa0190800:CDS
TATGGACTTGTAACAAGACA+TGG 0.645211 2_1:-6296990 None:intergenic
CAGTTCTCCCAGATGCTGCG+AGG 0.652508 2_1:+6297636 Msa0190800:CDS
GATCAGGAGCAACTTCCACA+AGG 0.673647 2_1:-6297577 None:intergenic
CTTGAGAAATAACTTCTCTG+AGG 0.684042 2_1:+6297073 Msa0190800:CDS
ATTGTTGCTTGATCCAACAG+AGG 0.696020 2_1:-6297401 None:intergenic
ACTTCTCTGAGGCTACATGG+TGG 0.749190 2_1:+6297084 Msa0190800:CDS
GGCTTGTGTAAAGAAGTCAG+GGG 0.777448 2_1:+6298610 Msa0190800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATTTATGAACAAT+TGG + chr2_1:6296275-6296294 Msa0190800:five_prime_UTR 10.0%
!! AAAAATAAAAAATATCATCA+TGG - chr2_1:6296642-6296661 None:intergenic 10.0%
!! ATAATATTAAGAATAATAAG+GGG - chr2_1:6297785-6297804 None:intergenic 10.0%
!! GAATAATATTAAGAATAATA+AGG - chr2_1:6297787-6297806 None:intergenic 10.0%
!!! TTTGAAATAATAAATCATCA+GGG - chr2_1:6296576-6296595 None:intergenic 15.0%
!!! ATTTGAAATAATAAATCATC+AGG - chr2_1:6296577-6296596 None:intergenic 15.0%
!!! AATAATCATGAACAAAATTT+TGG - chr2_1:6298668-6298687 None:intergenic 15.0%
!!! TTCAAATTCTCAATCTTTTA+TGG + chr2_1:6296590-6296609 Msa0190800:intron 20.0%
!! ATGTGATAAAATTCATCATA+TGG - chr2_1:6296679-6296698 None:intergenic 20.0%
!!! ATATGGAAAATTTTCTTGAA+GGG + chr2_1:6296841-6296860 Msa0190800:CDS 20.0%
!!! AACAATATAGAAAGTCTTAT+AGG + chr2_1:6297377-6297396 Msa0190800:CDS 20.0%
!!! ATTGTACAAGATTTTAAGTT+AGG + chr2_1:6297751-6297770 Msa0190800:intron 20.0%
!!! ATTAGTTTCATATTTGTTTC+TGG + chr2_1:6298685-6298704 Msa0190800:three_prime_UTR 20.0%
!!! CTTGCAGTATTTTTTAATCA+TGG - chr2_1:6296461-6296480 None:intergenic 25.0%
!! TCAAGAAAATTTTCCATATG+AGG - chr2_1:6296840-6296859 None:intergenic 25.0%
!! CATATGGAAAATTTTCTTGA+AGG + chr2_1:6296840-6296859 Msa0190800:CDS 25.0%
! AAGAATTTCTAAGTAACCTT+TGG - chr2_1:6296931-6296950 None:intergenic 25.0%
!! ATTTGTTAGACAATGTCATA+AGG + chr2_1:6297135-6297154 Msa0190800:CDS 25.0%
! AATCTTAATCGAATTGCTAT+TGG + chr2_1:6297329-6297348 Msa0190800:CDS 25.0%
!!! ATGATGTTGATTTTGTCATA+AGG + chr2_1:6297468-6297487 Msa0190800:CDS 25.0%
! ATTTAGTAACTCTCTTAACT+TGG - chr2_1:6297544-6297563 None:intergenic 25.0%
! TAAGAGAGTTACTAAATTGA+TGG + chr2_1:6297547-6297566 Msa0190800:CDS 25.0%
! AATATCGTTATTTGTGATCT+AGG - chr2_1:6297866-6297885 None:intergenic 25.0%
! CAGCATAATTTATGATGAAA+TGG - chr2_1:6297898-6297917 None:intergenic 25.0%
! TGTGTTTAAAGACTATTGTT+CGG - chr2_1:6298045-6298064 None:intergenic 25.0%
!!! TTGTGTGCTATTTAAGTTTT+TGG + chr2_1:6298195-6298214 Msa0190800:intron 25.0%
!! TTCCACTGATAAATTTTCAT+AGG + chr2_1:6298286-6298305 Msa0190800:intron 25.0%
! AACCTATGAAAATTTATCAG+TGG - chr2_1:6298291-6298310 None:intergenic 25.0%
ACAAGCTTTCATTGTAAACA+AGG + chr2_1:6296334-6296353 Msa0190800:five_prime_UTR 30.0%
TACAAAACCCATCATCATTA+TGG + chr2_1:6296502-6296521 Msa0190800:intron 30.0%
AACATTAATAATGCACTTCG+TGG - chr2_1:6296531-6296550 None:intergenic 30.0%
! ATGCCTTTGAGTTCATAATT+AGG + chr2_1:6296697-6296716 Msa0190800:intron 30.0%
AAGCCTAATTATGAACTCAA+AGG - chr2_1:6296703-6296722 None:intergenic 30.0%
ATTTCTAAGTAACCTTTGGA+AGG - chr2_1:6296927-6296946 None:intergenic 30.0%
AGAAATTCTTGACAGAATCA+TGG + chr2_1:6296941-6296960 Msa0190800:CDS 30.0%
! TATCTTAACTTGAGTTGTGT+TGG + chr2_1:6297212-6297231 Msa0190800:CDS 30.0%
! ATCTTAACTTGAGTTGTGTT+GGG + chr2_1:6297213-6297232 Msa0190800:CDS 30.0%
TGTTAAGATTGAGACGATTA+AGG + chr2_1:6297247-6297266 Msa0190800:CDS 30.0%
TATTGGATCAATTTCTTGCA+AGG + chr2_1:6297298-6297317 Msa0190800:CDS 30.0%
!!! CTCGTGAAGATTTTTTTGTT+AGG + chr2_1:6297491-6297510 Msa0190800:CDS 30.0%
!!! GTGAAGATTTTTTTGTTAGG+AGG + chr2_1:6297494-6297513 Msa0190800:CDS 30.0%
!!! AAGATTTTTTTGTTAGGAGG+AGG + chr2_1:6297497-6297516 Msa0190800:CDS 30.0%
ATCAATGCTTCAAATTCAGA+AGG - chr2_1:6297614-6297633 None:intergenic 30.0%
TGATCAATTATACATAGCCA+TGG + chr2_1:6297667-6297686 Msa0190800:CDS 30.0%
ATTATCTTGAAACCATACCA+CGG - chr2_1:6298014-6298033 None:intergenic 30.0%
! TATCTGTTTTCTTTCGAATG+AGG + chr2_1:6298218-6298237 Msa0190800:intron 30.0%
! AAATTTTCATAGGTTCATGC+AGG + chr2_1:6298296-6298315 Msa0190800:intron 30.0%
AAGACATCTTACAAGAAACT+TGG + chr2_1:6298388-6298407 Msa0190800:CDS 30.0%
AACTTCTTTGACTCAATGTT+TGG + chr2_1:6298497-6298516 Msa0190800:CDS 30.0%
GTGACAACTTATCATTGTGT+TGG - chr2_1:6296420-6296439 None:intergenic 35.0%
!!! TGATGATGGGTTTTGTAAGA+AGG - chr2_1:6296499-6296518 None:intergenic 35.0%
GTGGAATCCATAATGATGAT+GGG - chr2_1:6296512-6296531 None:intergenic 35.0%
! ATGTTCTGCTGCTCAATTTT+TGG + chr2_1:6296773-6296792 Msa0190800:CDS 35.0%
! TTCTTGAAGGGATTCGTTTT+TGG + chr2_1:6296853-6296872 Msa0190800:CDS 35.0%
! CTTTGGAAGGAAATGATTCT+TGG - chr2_1:6296914-6296933 None:intergenic 35.0%
CAAGAATCATTTCCTTCCAA+AGG + chr2_1:6296912-6296931 Msa0190800:CDS 35.0%
TATGGACTTGTAACAAGACA+TGG - chr2_1:6296993-6297012 None:intergenic 35.0%
CTGTTTGAAGAACATGTGTA+TGG - chr2_1:6297011-6297030 None:intergenic 35.0%
CTTGAGAAATAACTTCTCTG+AGG + chr2_1:6297073-6297092 Msa0190800:CDS 35.0%
! TCTTAACTTGAGTTGTGTTG+GGG + chr2_1:6297214-6297233 Msa0190800:CDS 35.0%
CTTCTCTCATTGCTTGATAT+TGG + chr2_1:6297281-6297300 Msa0190800:CDS 35.0%
TACTTCTTCCATCTCCAAAT+GGG + chr2_1:6297432-6297451 Msa0190800:CDS 35.0%
TATGCATGATCTTTCCCATT+TGG - chr2_1:6297449-6297468 None:intergenic 35.0%
!! ATTGATGGATTTGTTCCTTG+TGG + chr2_1:6297562-6297581 Msa0190800:CDS 35.0%
TACCTTTAGATACATGTCCA+TGG - chr2_1:6297687-6297706 None:intergenic 35.0%
TTATCTTGAAACCATACCAC+GGG - chr2_1:6298013-6298032 None:intergenic 35.0%
CTACATCTCTGACTACATAT+TGG - chr2_1:6298146-6298165 None:intergenic 35.0%
CAATATGTAGTCAGAGATGT+AGG + chr2_1:6298144-6298163 Msa0190800:intron 35.0%
TAGCACACAAGATTTGATCA+CGG - chr2_1:6298185-6298204 None:intergenic 35.0%
CAAGAACATAGATGTGAAAG+AGG + chr2_1:6298529-6298548 Msa0190800:CDS 35.0%
AGGATGTTGAAGAGATAAAG+AGG + chr2_1:6298549-6298568 Msa0190800:CDS 35.0%
GTTGAAGAGATAAAGAGGTA+TGG + chr2_1:6298554-6298573 Msa0190800:CDS 35.0%
! GATAAAGAGGTATGGAGAAT+TGG + chr2_1:6298562-6298581 Msa0190800:CDS 35.0%
AATTGGAAGGAATGGAATGT+GGG + chr2_1:6298579-6298598 Msa0190800:CDS 35.0%
CGTGGAATCCATAATGATGA+TGG - chr2_1:6296513-6296532 None:intergenic 40.0%
AGAACATAGCATGGACACAT+TGG - chr2_1:6296760-6296779 None:intergenic 40.0%
!! TGCTGCTCAATTTTTGGAGA+TGG + chr2_1:6296779-6296798 Msa0190800:CDS 40.0%
! ACCAAGTTTGAAGCCTCATA+TGG + chr2_1:6296824-6296843 Msa0190800:CDS 40.0%
TCCATATGAGGCTTCAAACT+TGG - chr2_1:6296828-6296847 None:intergenic 40.0%
!! AAGGGATTCGTTTTTGGACT+TGG + chr2_1:6296859-6296878 Msa0190800:CDS 40.0%
! TTGGACTTGGTTTGAACTCA+TGG + chr2_1:6296872-6296891 Msa0190800:CDS 40.0%
TGCTTGTGTCACAAGAAAAC+TGG - chr2_1:6297043-6297062 None:intergenic 40.0%
!! ATAACTTCTCTGAGGCTACA+TGG + chr2_1:6297081-6297100 Msa0190800:CDS 40.0%
! AAGTCTTATAGGTCCTCTGT+TGG + chr2_1:6297388-6297407 Msa0190800:CDS 40.0%
! ATTGTTGCTTGATCCAACAG+AGG - chr2_1:6297404-6297423 None:intergenic 40.0%
CTACTTCTTCCATCTCCAAA+TGG + chr2_1:6297431-6297450 Msa0190800:CDS 40.0%
TGATCTTTCCCATTTGGAGA+TGG - chr2_1:6297443-6297462 None:intergenic 40.0%
ATGCTTCAAATTCAGAAGGC+TGG - chr2_1:6297610-6297629 None:intergenic 40.0%
AGCCATGGACATGTATCTAA+AGG + chr2_1:6297682-6297701 Msa0190800:CDS 40.0%
! GTGATCTAGGCCATAGTTTT+AGG - chr2_1:6297853-6297872 None:intergenic 40.0%
TCTACTTCTAGCCTGATAAG+CGG + chr2_1:6297963-6297982 Msa0190800:intron 40.0%
TATCTTGAAACCATACCACG+GGG - chr2_1:6298012-6298031 None:intergenic 40.0%
TTTCTTGTGACATCTTCTCG+TGG - chr2_1:6298364-6298383 None:intergenic 40.0%
!!! GCTCTTGGTTTTGTTTCTGA+AGG - chr2_1:6298419-6298438 None:intergenic 40.0%
! AAGAGGTATGGAGAATTGGA+AGG + chr2_1:6298566-6298585 Msa0190800:CDS 40.0%
GTATGGAGAATTGGAAGGAA+TGG + chr2_1:6298571-6298590 Msa0190800:CDS 40.0%
GAATTGGAAGGAATGGAATG+TGG + chr2_1:6298578-6298597 Msa0190800:CDS 40.0%
CTTCTTTACACAAGCCAGAT+GGG - chr2_1:6298606-6298625 None:intergenic 40.0%
ACTTCTTTACACAAGCCAGA+TGG - chr2_1:6298607-6298626 None:intergenic 40.0%
! TGGCTTGTGTAAAGAAGTCA+GGG + chr2_1:6298609-6298628 Msa0190800:CDS 40.0%
!! TGGAGTTTGCTGTGAACTTG+AGG + chr2_1:6296295-6296314 Msa0190800:five_prime_UTR 45.0%
TACTGCAAGCATGTCACAAG+TGG + chr2_1:6296472-6296491 Msa0190800:intron 45.0%
TTGCTACAATAGCAGCAGCA+TGG + chr2_1:6296722-6296741 Msa0190800:exon 45.0%
TTGAGCAGCAGAACATAGCA+TGG - chr2_1:6296769-6296788 None:intergenic 45.0%
GTCACAAGAAAACTGGAAGC+TGG - chr2_1:6297036-6297055 None:intergenic 45.0%
AATTCAGAAGGCTGGAGATG+AGG - chr2_1:6297602-6297621 None:intergenic 45.0%
CGCAGACACACCTAAAACTA+TGG + chr2_1:6297840-6297859 Msa0190800:intron 45.0%
CTACTTCTAGCCTGATAAGC+GGG + chr2_1:6297964-6297983 Msa0190800:intron 45.0%
ATCTTGAAACCATACCACGG+GGG - chr2_1:6298011-6298030 None:intergenic 45.0%
AGTCAGAGATGTAGGCACAT+TGG + chr2_1:6298152-6298171 Msa0190800:intron 45.0%
TCATAGGTTCATGCAGGCAT+AGG + chr2_1:6298302-6298321 Msa0190800:intron 45.0%
TCATGCAGGCATAGGTGAAA+AGG + chr2_1:6298310-6298329 Msa0190800:CDS 45.0%
TGTCTAGTGACATGAGCTCT+TGG - chr2_1:6298434-6298453 None:intergenic 45.0%
! CTGGCTTGTGTAAAGAAGTC+AGG + chr2_1:6298608-6298627 Msa0190800:CDS 45.0%
GGCTTGTGTAAAGAAGTCAG+GGG + chr2_1:6298610-6298629 Msa0190800:CDS 45.0%
!!! ATGATATTTTTTATTTTTTT+TGG + chr2_1:6296644-6296663 Msa0190800:intron 5.0%
!! AATAATATTAAGAATAATAA+GGG - chr2_1:6297786-6297805 None:intergenic 5.0%
!! ACTTCTCTGAGGCTACATGG+TGG + chr2_1:6297084-6297103 Msa0190800:CDS 50.0%
GATCAGGAGCAACTTCCACA+AGG - chr2_1:6297580-6297599 None:intergenic 50.0%
ATTGGAAATCCCCCGTGGTA+TGG + chr2_1:6297999-6298018 Msa0190800:intron 50.0%
AATGGAATGTGGGACCCATC+TGG + chr2_1:6298589-6298608 Msa0190800:CDS 50.0%
GAAGGCTGGAGATGAGGATC+AGG - chr2_1:6297596-6297615 None:intergenic 55.0%
AGTTCTCCCAGATGCTGCGA+GGG + chr2_1:6297637-6297656 Msa0190800:CDS 55.0%
CAGTTCTCCCAGATGCTGCG+AGG + chr2_1:6297636-6297655 Msa0190800:CDS 60.0%
GCGATTCCCTCGCAGCATCT+GGG - chr2_1:6297646-6297665 None:intergenic 60.0%
TGCGATTCCCTCGCAGCATC+TGG - chr2_1:6297647-6297666 None:intergenic 60.0%
GCGTGACAAGCCCGCTTATC+AGG - chr2_1:6297977-6297996 None:intergenic 60.0%
! AGCGGGCTTGTCACGCGAAT+TGG + chr2_1:6297981-6298000 Msa0190800:intron 60.0%
CGCGAATTGGAAATCCCCCG+TGG + chr2_1:6297994-6298013 Msa0190800:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6296273 6298732 6296273 ID=Msa0190800;Name=Msa0190800
chr2_1 mRNA 6296273 6298732 6296273 ID=Msa0190800-mRNA-1;Parent=Msa0190800;Name=Msa0190800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0|0.33|3|50|445
chr2_1 exon 6296273 6296355 6296273 ID=Msa0190800-mRNA-1:exon:2851;Parent=Msa0190800-mRNA-1
chr2_1 exon 6296719 6297703 6296719 ID=Msa0190800-mRNA-1:exon:2852;Parent=Msa0190800-mRNA-1
chr2_1 exon 6298308 6298732 6298308 ID=Msa0190800-mRNA-1:exon:2853;Parent=Msa0190800-mRNA-1
chr2_1 five_prime_UTR 6296273 6296355 6296273 ID=Msa0190800-mRNA-1:five_prime_utr;Parent=Msa0190800-mRNA-1
chr2_1 five_prime_UTR 6296719 6296740 6296719 ID=Msa0190800-mRNA-1:five_prime_utr;Parent=Msa0190800-mRNA-1
chr2_1 CDS 6296741 6297703 6296741 ID=Msa0190800-mRNA-1:cds;Parent=Msa0190800-mRNA-1
chr2_1 CDS 6298308 6298682 6298308 ID=Msa0190800-mRNA-1:cds;Parent=Msa0190800-mRNA-1
chr2_1 three_prime_UTR 6298683 6298732 6298683 ID=Msa0190800-mRNA-1:three_prime_utr;Parent=Msa0190800-mRNA-1
Gene Sequence

>Msa0190800

ATGGAGTTAACTTCATCCAATGTGTCCATGCTATGTTCTGCTGCTCAATTTTTGGAGATGGAAGAGTGTGATAGTCTTGAAGCACCAAGTTTGAAGCCTCATATGGAAAATTTTCTTGAAGGGATTCGTTTTTGGACTTGGTTTGAACTCATGGAAGCATTGAAACAATGCCAAGAATCATTTCCTTCCAAAGGTTACTTAGAAATTCTTGACAGAATCATGGATCAATTAATAGAAAGACTAGTTTCTCCATGTCTTGTTACAAGTCCATACACATGTTCTTCAAACAGATCCAGCTTCCAGTTTTCTTGTGACACAAGCAGTAACAATAGCTTGAGAAATAACTTCTCTGAGGCTACATGGTGGTTTGAACATCTTCTGTTTTTGAAGATTGATTTGTTAGACAATGTCATAAGGAAAATGATATCTCATGATTTTGATCATTCTATTGTATCAAAATTTCTATTCTATTATCTTAACTTGAGTTGTGTTGGGGCTGAACAAGATGTTAAGATTGAGACGATTAAGGTTCTAATCGATCTTCTCTCATTGCTTGATATTGGATCAATTTCTTGCAAGGATTTGTTCAATCTTAATCGAATTGCTATTGGTTTGAAAATAAGCAAATTTTGTAGAAACAATATAGAAAGTCTTATAGGTCCTCTGTTGGATCAAGCAACAATTGATTATCTACTTCTTCCATCTCCAAATGGGAAAGATCATGCATATGATGTTGATTTTGTCATAAGGCTCGTGAAGATTTTTTTGTTAGGAGGAGGTAGTTTTGAGTTAGATTTGAACCAAGTTAAGAGAGTTACTAAATTGATGGATTTGTTCCTTGTGGAAGTTGCTCCTGATCCTCATCTCCAGCCTTCTGAATTTGAAGCATTGATTACAGTTCTCCCAGATGCTGCGAGGGAATCGCATGATCAATTATACATAGCCATGGACATGTATCTAAAGGTTCATGCAGGCATAGGTGAAAAGGAAGTGATGAATATTTGTTGTACACTGAACCACGAGAAGATGTCACAAGAAAGTTTAAGACATCTTACAAGAAACTTGGTATTTCCTTCAGAAACAAAACCAAGAGCTCATGTCACTAGACAGAGTCGAATGAAAACACTACTTCAAGAAAATGATCATTTGAAAAACTTCTTTGACTCAATGTTTGGTAAAAGCTTCAAGAACATAGATGTGAAAGAGGATGTTGAAGAGATAAAGAGGTATGGAGAATTGGAAGGAATGGAATGTGGGACCCATCTGGCTTGTGTAAAGAAGTCAGGGGTTCATACTTTGAGCAATAATACTATATACTTGCCAAAATTTTGTTCATGA

Protein sequence

>Msa0190800

MELTSSNVSMLCSAAQFLEMEECDSLEAPSLKPHMENFLEGIRFWTWFELMEALKQCQESFPSKGYLEILDRIMDQLIERLVSPCLVTSPYTCSSNRSSFQFSCDTSSNNSLRNNFSEATWWFEHLLFLKIDLLDNVIRKMISHDFDHSIVSKFLFYYLNLSCVGAEQDVKIETIKVLIDLLSLLDIGSISCKDLFNLNRIAIGLKISKFCRNNIESLIGPLLDQATIDYLLLPSPNGKDHAYDVDFVIRLVKIFLLGGGSFELDLNQVKRVTKLMDLFLVEVAPDPHLQPSEFEALITVLPDAARESHDQLYIAMDMYLKVHAGIGEKEVMNICCTLNHEKMSQESLRHLTRNLVFPSETKPRAHVTRQSRMKTLLQENDHLKNFFDSMFGKSFKNIDVKEDVEEIKRYGELEGMECGTHLACVKKSGVHTLSNNTIYLPKFCS*