Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0272150 | XP_003593387.1 | 95.730 | 445 | 19 | 0 | 1 | 445 | 1 | 445 | 0.0 | 880 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0272150 | sp|Q9C5J4|Y3210_ARATH | 40.947 | 359 | 193 | 4 | 6 | 359 | 78 | 422 | 1.09e-83 | 269 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0272150 | G7IK28 | 95.730 | 445 | 19 | 0 | 1 | 445 | 1 | 445 | 0.0 | 880 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0190800 | Msa0272150 | 0.974373 | 4.835190e-138 | -8.615850e-47 |
Msa0272150 | Msa0311390 | 0.878414 | 2.863559e-69 | -8.615850e-47 |
Msa0272150 | Msa1464090 | 0.801324 | 9.500046e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0272150 | MtrunA17_Chr2g0280541 | 95.730 | 445 | 19 | 0 | 1 | 445 | 1 | 445 | 0.0 | 880 |
Msa0272150 | MtrunA17_Chr4g0023801 | 37.214 | 481 | 254 | 12 | 3 | 445 | 75 | 545 | 2.82e-94 | 294 |
Msa0272150 | MtrunA17_Chr4g0037661 | 28.429 | 401 | 256 | 8 | 1 | 375 | 74 | 469 | 2.06e-43 | 160 |
Msa0272150 | MtrunA17_Chr1g0163311 | 29.557 | 406 | 241 | 12 | 1 | 373 | 67 | 460 | 1.19e-42 | 157 |
Msa0272150 | MtrunA17_Chr1g0195911 | 27.739 | 429 | 259 | 7 | 1 | 393 | 102 | 515 | 3.71e-36 | 140 |
Msa0272150 | MtrunA17_Chr8g0374011 | 30.424 | 401 | 230 | 7 | 1 | 358 | 106 | 500 | 1.70e-35 | 139 |
Msa0272150 | MtrunA17_Chr1g0199631 | 30.633 | 395 | 230 | 10 | 1 | 358 | 57 | 444 | 2.88e-34 | 134 |
Msa0272150 | MtrunA17_Chr1g0191711 | 27.763 | 371 | 222 | 9 | 2 | 358 | 129 | 467 | 1.90e-33 | 132 |
Msa0272150 | MtrunA17_Chr2g0320691 | 26.700 | 397 | 247 | 9 | 1 | 358 | 91 | 482 | 3.09e-33 | 132 |
Msa0272150 | MtrunA17_Chr2g0303541 | 28.288 | 403 | 238 | 8 | 1 | 358 | 93 | 489 | 5.25e-33 | 131 |
Msa0272150 | MtrunA17_Chr4g0010091 | 28.173 | 394 | 229 | 8 | 2 | 358 | 101 | 477 | 1.22e-32 | 130 |
Msa0272150 | MtrunA17_Chr2g0279481 | 26.477 | 457 | 258 | 12 | 1 | 385 | 110 | 560 | 1.50e-32 | 130 |
Msa0272150 | MtrunA17_Chr8g0382231 | 24.062 | 453 | 263 | 11 | 1 | 401 | 119 | 542 | 1.03e-31 | 127 |
Msa0272150 | MtrunA17_Chr4g0050021 | 25.607 | 453 | 272 | 8 | 1 | 391 | 110 | 559 | 2.44e-31 | 127 |
Msa0272150 | MtrunA17_Chr7g0268781 | 26.606 | 436 | 258 | 11 | 1 | 393 | 102 | 518 | 3.17e-31 | 126 |
Msa0272150 | MtrunA17_Chr7g0245201 | 29.227 | 414 | 229 | 12 | 2 | 374 | 129 | 519 | 2.81e-30 | 123 |
Msa0272150 | MtrunA17_Chr5g0401341 | 27.968 | 379 | 247 | 9 | 3 | 358 | 94 | 469 | 7.73e-29 | 119 |
Msa0272150 | MtrunA17_Chr2g0285511 | 28.058 | 417 | 249 | 12 | 1 | 375 | 94 | 501 | 2.37e-28 | 117 |
Msa0272150 | MtrunA17_Chr1g0207461 | 25.907 | 386 | 251 | 9 | 3 | 359 | 96 | 475 | 6.92e-27 | 113 |
Msa0272150 | MtrunA17_Chr4g0076521 | 26.121 | 379 | 241 | 12 | 8 | 361 | 100 | 464 | 2.00e-26 | 112 |
Msa0272150 | MtrunA17_Chr5g0401451 | 25.806 | 403 | 255 | 11 | 2 | 374 | 107 | 495 | 2.61e-26 | 112 |
Msa0272150 | MtrunA17_Chr3g0108331 | 26.667 | 390 | 219 | 12 | 2 | 358 | 91 | 446 | 2.32e-25 | 108 |
Msa0272150 | MtrunA17_Chr4g0053841 | 25.935 | 401 | 254 | 9 | 2 | 374 | 82 | 467 | 1.71e-24 | 106 |
Msa0272150 | MtrunA17_Chr1g0150191 | 26.943 | 386 | 250 | 9 | 1 | 358 | 93 | 474 | 4.41e-24 | 105 |
Msa0272150 | MtrunA17_Chr5g0432861 | 25.313 | 399 | 222 | 11 | 2 | 358 | 92 | 456 | 4.40e-23 | 102 |
Msa0272150 | MtrunA17_Chr1g0181181 | 25.581 | 473 | 268 | 15 | 1 | 420 | 94 | 535 | 1.23e-22 | 100 |
Msa0272150 | MtrunA17_Chr2g0332281 | 30.153 | 262 | 152 | 7 | 122 | 358 | 24 | 279 | 2.55e-21 | 95.9 |
Msa0272150 | MtrunA17_Chr4g0003891 | 28.159 | 277 | 181 | 6 | 114 | 373 | 39 | 314 | 5.03e-20 | 92.0 |
Msa0272150 | MtrunA17_Chr5g0412591 | 27.195 | 353 | 191 | 9 | 67 | 358 | 128 | 475 | 6.45e-20 | 92.4 |
Msa0272150 | MtrunA17_Chr2g0290741 | 25.654 | 382 | 229 | 13 | 8 | 361 | 100 | 454 | 6.15e-19 | 89.4 |
Msa0272150 | MtrunA17_Chr8g0367891 | 23.704 | 405 | 235 | 11 | 1 | 358 | 93 | 470 | 2.66e-16 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0272150 | AT3G22104.4 | 40.947 | 359 | 193 | 4 | 6 | 359 | 3 | 347 | 8.38e-86 | 269 |
Msa0272150 | AT3G22104.2 | 40.947 | 359 | 193 | 4 | 6 | 359 | 3 | 347 | 8.38e-86 | 269 |
Msa0272150 | AT3G22104.3 | 40.947 | 359 | 193 | 4 | 6 | 359 | 3 | 347 | 8.38e-86 | 269 |
Msa0272150 | AT3G22104.1 | 40.947 | 359 | 193 | 4 | 6 | 359 | 78 | 422 | 1.11e-84 | 269 |
Msa0272150 | AT3G19850.1 | 29.723 | 397 | 233 | 9 | 6 | 370 | 81 | 463 | 5.99e-47 | 170 |
Msa0272150 | AT3G08570.1 | 28.922 | 408 | 243 | 9 | 2 | 377 | 103 | 495 | 5.61e-35 | 137 |
Msa0272150 | AT5G48800.1 | 29.412 | 374 | 236 | 7 | 2 | 358 | 108 | 470 | 6.42e-35 | 137 |
Msa0272150 | AT2G47860.1 | 28.675 | 415 | 243 | 9 | 1 | 377 | 100 | 499 | 2.06e-33 | 133 |
Msa0272150 | AT1G50280.2 | 28.351 | 388 | 249 | 9 | 6 | 369 | 48 | 430 | 2.28e-33 | 131 |
Msa0272150 | AT5G66560.4 | 30.556 | 396 | 229 | 9 | 1 | 358 | 90 | 477 | 2.92e-33 | 132 |
Msa0272150 | AT1G50280.1 | 28.351 | 388 | 249 | 9 | 6 | 369 | 81 | 463 | 3.03e-33 | 131 |
Msa0272150 | AT5G03250.1 | 28.469 | 418 | 250 | 10 | 1 | 375 | 94 | 505 | 3.14e-33 | 132 |
Msa0272150 | AT2G47860.3 | 28.675 | 415 | 243 | 9 | 1 | 377 | 123 | 522 | 3.47e-33 | 132 |
Msa0272150 | AT5G66560.1 | 30.556 | 396 | 229 | 9 | 1 | 358 | 129 | 516 | 3.62e-33 | 132 |
Msa0272150 | AT5G66560.3 | 30.556 | 396 | 229 | 9 | 1 | 358 | 100 | 487 | 4.46e-33 | 132 |
Msa0272150 | AT3G08660.3 | 28.788 | 396 | 238 | 8 | 2 | 377 | 40 | 411 | 5.39e-32 | 128 |
Msa0272150 | AT3G08660.1 | 28.788 | 396 | 238 | 8 | 2 | 377 | 100 | 471 | 1.09e-31 | 127 |
Msa0272150 | AT2G47860.5 | 29.794 | 339 | 195 | 6 | 77 | 377 | 48 | 381 | 5.95e-30 | 122 |
Msa0272150 | AT2G47860.2 | 29.794 | 339 | 195 | 6 | 77 | 377 | 48 | 381 | 5.95e-30 | 122 |
Msa0272150 | AT1G30440.1 | 28.784 | 403 | 240 | 9 | 1 | 358 | 94 | 494 | 7.81e-30 | 122 |
Msa0272150 | AT1G03010.3 | 27.187 | 423 | 249 | 10 | 1 | 377 | 98 | 507 | 9.47e-30 | 122 |
Msa0272150 | AT1G03010.2 | 27.187 | 423 | 249 | 10 | 1 | 377 | 72 | 481 | 1.02e-29 | 122 |
Msa0272150 | AT1G03010.1 | 27.187 | 423 | 249 | 10 | 1 | 377 | 99 | 508 | 1.41e-29 | 122 |
Msa0272150 | AT5G03250.2 | 27.676 | 383 | 230 | 9 | 36 | 375 | 15 | 393 | 5.62e-29 | 119 |
Msa0272150 | AT3G50840.2 | 30.318 | 409 | 244 | 10 | 5 | 388 | 52 | 444 | 1.34e-28 | 118 |
Msa0272150 | AT3G50840.3 | 30.318 | 409 | 244 | 10 | 5 | 388 | 52 | 444 | 1.34e-28 | 118 |
Msa0272150 | AT3G50840.1 | 29.630 | 405 | 252 | 9 | 5 | 388 | 88 | 480 | 1.94e-28 | 118 |
Msa0272150 | AT2G30520.2 | 26.478 | 389 | 224 | 10 | 2 | 358 | 49 | 407 | 1.28e-27 | 115 |
Msa0272150 | AT2G30520.3 | 26.478 | 389 | 224 | 10 | 2 | 358 | 49 | 407 | 1.28e-27 | 115 |
Msa0272150 | AT2G30520.1 | 26.478 | 389 | 224 | 10 | 2 | 358 | 97 | 455 | 1.62e-27 | 115 |
Msa0272150 | AT5G67385.4 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0272150 | AT5G67385.5 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0272150 | AT5G67385.2 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0272150 | AT5G67385.3 | 26.817 | 399 | 251 | 11 | 2 | 374 | 48 | 431 | 3.74e-27 | 114 |
Msa0272150 | AT5G66560.2 | 31.111 | 360 | 202 | 9 | 1 | 322 | 129 | 480 | 4.82e-27 | 113 |
Msa0272150 | AT5G67385.1 | 26.817 | 399 | 251 | 11 | 2 | 374 | 93 | 476 | 6.05e-27 | 114 |
Msa0272150 | AT5G47800.3 | 26.579 | 380 | 239 | 9 | 8 | 361 | 100 | 465 | 1.03e-26 | 113 |
Msa0272150 | AT5G47800.1 | 26.579 | 380 | 239 | 9 | 8 | 361 | 100 | 465 | 1.03e-26 | 113 |
Msa0272150 | AT5G47800.4 | 26.579 | 380 | 239 | 9 | 8 | 361 | 100 | 465 | 1.03e-26 | 113 |
Msa0272150 | AT5G47800.2 | 26.579 | 380 | 239 | 9 | 8 | 361 | 213 | 578 | 1.88e-26 | 112 |
Msa0272150 | AT3G44820.1 | 24.205 | 409 | 254 | 8 | 1 | 358 | 92 | 495 | 2.14e-26 | 112 |
Msa0272150 | AT3G49970.1 | 27.838 | 370 | 212 | 11 | 2 | 354 | 60 | 391 | 3.57e-26 | 111 |
Msa0272150 | AT3G49970.2 | 27.838 | 370 | 212 | 11 | 2 | 354 | 60 | 391 | 3.57e-26 | 111 |
Msa0272150 | AT2G47860.4 | 29.444 | 360 | 201 | 9 | 1 | 322 | 100 | 444 | 6.45e-26 | 109 |
Msa0272150 | AT2G47860.6 | 29.444 | 360 | 201 | 9 | 1 | 322 | 123 | 467 | 7.09e-26 | 110 |
Msa0272150 | AT2G23050.1 | 26.230 | 366 | 231 | 8 | 3 | 358 | 100 | 436 | 1.22e-23 | 103 |
Msa0272150 | AT3G08660.2 | 28.448 | 348 | 205 | 8 | 2 | 329 | 100 | 423 | 1.52e-23 | 102 |
Msa0272150 | AT5G13600.1 | 25.298 | 419 | 256 | 12 | 1 | 375 | 91 | 496 | 1.68e-23 | 103 |
Msa0272150 | AT2G14820.2 | 24.416 | 385 | 257 | 8 | 3 | 358 | 95 | 474 | 1.23e-22 | 101 |
Msa0272150 | AT2G14820.1 | 24.416 | 385 | 257 | 8 | 3 | 358 | 95 | 474 | 1.23e-22 | 101 |
Msa0272150 | AT2G23050.2 | 27.586 | 290 | 186 | 6 | 79 | 358 | 45 | 320 | 1.46e-20 | 93.2 |
Msa0272150 | AT5G10250.2 | 28.444 | 225 | 136 | 5 | 173 | 379 | 296 | 513 | 7.50e-20 | 92.8 |
Msa0272150 | AT5G67440.3 | 25.995 | 377 | 246 | 11 | 3 | 358 | 98 | 462 | 1.85e-19 | 91.3 |
Msa0272150 | AT5G67440.1 | 25.995 | 377 | 246 | 11 | 3 | 358 | 98 | 462 | 1.85e-19 | 91.3 |
Msa0272150 | AT5G67440.2 | 25.995 | 377 | 246 | 11 | 3 | 358 | 61 | 425 | 2.41e-19 | 90.9 |
Msa0272150 | AT4G37590.1 | 25.613 | 367 | 241 | 10 | 3 | 358 | 106 | 451 | 5.74e-19 | 90.1 |
Msa0272150 | AT3G26490.1 | 25.225 | 444 | 274 | 13 | 1 | 395 | 95 | 529 | 8.59e-19 | 89.4 |
Msa0272150 | AT3G26490.3 | 25.225 | 444 | 274 | 13 | 1 | 395 | 95 | 529 | 8.59e-19 | 89.4 |
Msa0272150 | AT3G26490.4 | 25.225 | 444 | 274 | 13 | 1 | 395 | 95 | 529 | 8.59e-19 | 89.4 |
Msa0272150 | AT5G10250.1 | 28.505 | 214 | 135 | 5 | 173 | 379 | 296 | 498 | 2.24e-18 | 88.2 |
Msa0272150 | AT1G52770.1 | 32.292 | 192 | 117 | 3 | 189 | 373 | 119 | 304 | 1.15e-17 | 85.5 |
Msa0272150 | AT5G64330.1 | 30.198 | 202 | 109 | 3 | 189 | 358 | 390 | 591 | 1.42e-17 | 85.9 |
Msa0272150 | AT5G64330.3 | 30.198 | 202 | 109 | 3 | 189 | 358 | 331 | 532 | 1.59e-17 | 85.5 |
Msa0272150 | AT5G64330.2 | 30.198 | 202 | 109 | 3 | 189 | 358 | 390 | 591 | 1.78e-17 | 85.5 |
Msa0272150 | AT5G48130.1 | 25.000 | 360 | 251 | 9 | 7 | 358 | 107 | 455 | 1.87e-17 | 85.5 |
Msa0272150 | AT4G31820.2 | 22.798 | 386 | 242 | 11 | 3 | 358 | 42 | 401 | 1.54e-16 | 82.4 |
Msa0272150 | AT4G31820.1 | 22.798 | 386 | 242 | 11 | 3 | 358 | 95 | 454 | 1.74e-16 | 82.4 |
Msa0272150 | AT3G15570.1 | 33.333 | 177 | 105 | 3 | 189 | 358 | 124 | 294 | 1.98e-16 | 81.6 |
Msa0272150 | AT1G67900.5 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0272150 | AT1G67900.1 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0272150 | AT1G67900.3 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0272150 | AT1G67900.6 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0272150 | AT1G67900.2 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0272150 | AT1G67900.4 | 24.163 | 418 | 246 | 11 | 1 | 358 | 89 | 495 | 1.32e-15 | 79.7 |
Msa0272150 | AT3G03510.1 | 24.722 | 449 | 266 | 16 | 1 | 427 | 20 | 418 | 9.75e-14 | 73.2 |
Find 73 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAGTTTCATATTTGTTTC+TGG | 0.163326 | 2_3:-3676416 | Msa0272150:three_prime_UTR |
AATAATCATGAACAAAATTT+TGG | 0.186168 | 2_3:+3676436 | None:intergenic |
CTTCTCTCATTGCTTGATAT+TGG | 0.269406 | 2_3:-3677820 | Msa0272150:CDS |
TAAGAGAGTTACTAAATTGA+TGG | 0.270336 | 2_3:-3677554 | Msa0272150:CDS |
ATCTTAACTTGAGTTGTGTT+GGG | 0.271399 | 2_3:-3677888 | Msa0272150:CDS |
CTTTGGAAGGAAATGATTCT+TGG | 0.276322 | 2_3:+3678190 | None:intergenic |
TGCGATTCCCTCGCAGCATC+TGG | 0.298927 | 2_3:+3677457 | None:intergenic |
GATAAAGAGGTATGGAGAAT+TGG | 0.308656 | 2_3:-3676539 | Msa0272150:CDS |
TGTTAAGATTGAGACGATTA+AGG | 0.322350 | 2_3:-3677854 | Msa0272150:CDS |
AACTTCTTTGACTCAATGTT+TGG | 0.334568 | 2_3:-3676604 | Msa0272150:CDS |
AATCTTAATCGAATTGCTAT+TGG | 0.350422 | 2_3:-3677772 | Msa0272150:CDS |
AAGAATTTCTAAGTAACCTT+TGG | 0.354279 | 2_3:+3678173 | None:intergenic |
AATATTAATTTATGAACAAT+TGG | 0.357226 | 2_3:-3678826 | Msa0272150:five_prime_UTR |
TATGCATGATCTTTCCCATT+TGG | 0.362344 | 2_3:+3677655 | None:intergenic |
AACAATATAGAAAGTCTTAT+AGG | 0.376145 | 2_3:-3677724 | Msa0272150:CDS |
TGCTTGTGTCACAAGAAAAC+TGG | 0.377089 | 2_3:+3678061 | None:intergenic |
TATCTTAACTTGAGTTGTGT+TGG | 0.389129 | 2_3:-3677889 | Msa0272150:CDS |
CTGGCTTGTGTAAAGAAGTC+AGG | 0.412840 | 2_3:-3676493 | Msa0272150:CDS |
GAAGGCTGGAGATGAGGATC+AGG | 0.415316 | 2_3:+3677508 | None:intergenic |
CTACTTCTTCCATCTCCAAA+TGG | 0.419857 | 2_3:-3677670 | Msa0272150:CDS |
TCCATATGAGGCTTCAAACT+TGG | 0.429267 | 2_3:+3678276 | None:intergenic |
TTGGACTTGGTTTGAACTCA+TGG | 0.448896 | 2_3:-3678229 | Msa0272150:CDS |
AGAAATTCTTGACAGAATCA+TGG | 0.453296 | 2_3:-3678160 | Msa0272150:CDS |
AATGGAATGTGGGACCCATC+TGG | 0.457405 | 2_3:-3676512 | Msa0272150:CDS |
GTTGAAGAGATAAAGAGGTA+TGG | 0.458167 | 2_3:-3676547 | Msa0272150:CDS |
ATTTGTTAGACAATGTCATA+AGG | 0.461079 | 2_3:-3677966 | Msa0272150:CDS |
ATTTAGTAACTCTCTTAACT+TGG | 0.462016 | 2_3:+3677560 | None:intergenic |
ACCAAGTTTGAAGCCTCATA+TGG | 0.471749 | 2_3:-3678277 | Msa0272150:CDS |
GTATGGAGAATTGGAAGGAA+TGG | 0.482357 | 2_3:-3676530 | Msa0272150:CDS |
AGGATGTTGAAGAGATAAAG+AGG | 0.487290 | 2_3:-3676552 | Msa0272150:CDS |
ATGCTTCAAATTCAGAAGGC+TGG | 0.488106 | 2_3:+3677494 | None:intergenic |
TATTGGATCAATTTCTTGCA+AGG | 0.490862 | 2_3:-3677803 | Msa0272150:CDS |
TACTTCTTCCATCTCCAAAT+GGG | 0.494724 | 2_3:-3677669 | Msa0272150:CDS |
TGTCTAGTGACATGAGCTCT+TGG | 0.498662 | 2_3:+3676670 | None:intergenic |
TCATGCAGGCATAGGTGAAA+AGG | 0.500065 | 2_3:-3676791 | Msa0272150:CDS |
AAGACATCTTACAAGAAACT+TGG | 0.503196 | 2_3:-3676713 | Msa0272150:CDS |
CAAGAACATAGATGTGAAAG+AGG | 0.507528 | 2_3:-3676572 | Msa0272150:CDS |
CAAGAATCATTTCCTTCCAA+AGG | 0.510512 | 2_3:-3678189 | Msa0272150:CDS |
CTGTTTGAAGAACATGTGTA+TGG | 0.510698 | 2_3:+3678093 | None:intergenic |
TCATAGGTTCATGCAGGCAT+AGG | 0.518428 | 2_3:-3676799 | Msa0272150:intron |
CTTCTTTACACAAGCCAGAT+GGG | 0.520558 | 2_3:+3676498 | None:intergenic |
GTCACAAGAAAACTGGAAGC+TGG | 0.528319 | 2_3:+3678068 | None:intergenic |
TCTTAACTTGAGTTGTGTTG+GGG | 0.536862 | 2_3:-3677887 | Msa0272150:CDS |
ATTTCTAAGTAACCTTTGGA+AGG | 0.544773 | 2_3:+3678177 | None:intergenic |
ATAACTTCTCTGAGGCTACA+TGG | 0.547407 | 2_3:-3678020 | Msa0272150:CDS |
TGATCTTTCCCATTTGGAGA+TGG | 0.548740 | 2_3:+3677661 | None:intergenic |
GAATTGGAAGGAATGGAATG+TGG | 0.550446 | 2_3:-3676523 | Msa0272150:CDS |
AGCCATGGACATGTATCTAA+AGG | 0.550561 | 2_3:-3677419 | Msa0272150:intron |
ACTTCTTTACACAAGCCAGA+TGG | 0.554159 | 2_3:+3676497 | None:intergenic |
AAGTCTTATAGGTCCTCTGT+TGG | 0.561210 | 2_3:-3677713 | Msa0272150:CDS |
ATCAATGCTTCAAATTCAGA+AGG | 0.564510 | 2_3:+3677490 | None:intergenic |
TGGCTTGTGTAAAGAAGTCA+GGG | 0.569595 | 2_3:-3676492 | Msa0272150:CDS |
GCGATTCCCTCGCAGCATCT+GGG | 0.575559 | 2_3:+3677458 | None:intergenic |
AGAACATAGCATGGACACAT+TGG | 0.577656 | 2_3:+3678344 | None:intergenic |
TGATCAATTATACATAGCCA+TGG | 0.587189 | 2_3:-3677434 | Msa0272150:CDS |
TTTCTTGTGACATCTTCTCG+TGG | 0.587506 | 2_3:+3676740 | None:intergenic |
AGTTCTCCCAGATGCTGCGA+GGG | 0.592260 | 2_3:-3677464 | Msa0272150:CDS |
TACCTTTAGATACATGTCCA+TGG | 0.593742 | 2_3:+3677417 | None:intergenic |
AATTCAGAAGGCTGGAGATG+AGG | 0.594161 | 2_3:+3677502 | None:intergenic |
ACAAGCTTTCATTGTAAACA+AGG | 0.597814 | 2_3:-3678767 | Msa0272150:intron |
TTGCTACAATAGCAGCAGCA+TGG | 0.599645 | 2_3:-3678379 | Msa0272150:exon |
TTGAGCAGCAGAACATAGCA+TGG | 0.601035 | 2_3:+3678335 | None:intergenic |
TGGAGTTTGCTGTGAACTTG+AGG | 0.605340 | 2_3:-3678806 | Msa0272150:five_prime_UTR |
AAGAGGTATGGAGAATTGGA+AGG | 0.605606 | 2_3:-3676535 | Msa0272150:CDS |
AATTGGAAGGAATGGAATGT+GGG | 0.609226 | 2_3:-3676522 | Msa0272150:CDS |
ATTGATGGATTTGTTCCTTG+TGG | 0.613773 | 2_3:-3677539 | Msa0272150:CDS |
TATGGACTTGTAACAAGACA+TGG | 0.645211 | 2_3:+3678111 | None:intergenic |
CAGTTCTCCCAGATGCTGCG+AGG | 0.652508 | 2_3:-3677465 | Msa0272150:CDS |
GATCAGGAGCAACTTCCACA+AGG | 0.673647 | 2_3:+3677524 | None:intergenic |
CTTGAGAAATAACTTCTCTG+AGG | 0.684042 | 2_3:-3678028 | Msa0272150:CDS |
ATTGTTGCTTGATCCAACAG+AGG | 0.696020 | 2_3:+3677700 | None:intergenic |
ACTTCTCTGAGGCTACATGG+TGG | 0.749190 | 2_3:-3678017 | Msa0272150:CDS |
GGCTTGTGTAAAGAAGTCAG+GGG | 0.777448 | 2_3:-3676491 | Msa0272150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTAATTTATGAACAAT+TGG | - | chr2_3:3676393-3676412 | Msa0272150:three_prime_UTR | 10.0% |
!! | AAAAATAAAAAATATCATCA+TGG | + | chr2_3:3676760-3676779 | None:intergenic | 10.0% |
!! | ATAATATTAAGAATCATAAA+GGG | + | chr2_3:3677903-3677922 | None:intergenic | 10.0% |
!! | AATAATATTAAGAATCATAA+AGG | + | chr2_3:3677904-3677923 | None:intergenic | 10.0% |
!!! | TTTGAAATAATAAATCATCA+GGG | + | chr2_3:3676694-3676713 | None:intergenic | 15.0% |
!!! | ATTTGAAATAATAAATCATC+AGG | + | chr2_3:3676695-3676714 | None:intergenic | 15.0% |
!!! | AATAATCATGAACAAAATTT+TGG | + | chr2_3:3678786-3678805 | None:intergenic | 15.0% |
!!! | TTCAAATTCTCAATCTTTTA+TGG | - | chr2_3:3676708-3676727 | Msa0272150:CDS | 20.0% |
!! | ATGTGATAAAATTCATCATA+TGG | + | chr2_3:3676797-3676816 | None:intergenic | 20.0% |
!!! | ATATGGAAAATTTTCTTGAA+GGG | - | chr2_3:3676959-3676978 | Msa0272150:intron | 20.0% |
!!! | AACAATATAGAAAGTCTTAT+AGG | - | chr2_3:3677495-3677514 | Msa0272150:CDS | 20.0% |
!!! | ATTGTACAAGATTTTAAGTT+AGG | - | chr2_3:3677869-3677888 | Msa0272150:CDS | 20.0% |
!!! | ATTAGTTTCATATTTGTTTC+TGG | - | chr2_3:3678803-3678822 | Msa0272150:five_prime_UTR | 20.0% |
!!! | CTTGCAGTATTTTTTAATCA+TGG | + | chr2_3:3676579-3676598 | None:intergenic | 25.0% |
!! | TCAAGAAAATTTTCCATATG+AGG | + | chr2_3:3676958-3676977 | None:intergenic | 25.0% |
!! | CATATGGAAAATTTTCTTGA+AGG | - | chr2_3:3676958-3676977 | Msa0272150:intron | 25.0% |
! | AAGAATTTCTAAGTAACCTT+TGG | + | chr2_3:3677049-3677068 | None:intergenic | 25.0% |
!! | ATTTGTTAGACAATGTCATA+AGG | - | chr2_3:3677253-3677272 | Msa0272150:intron | 25.0% |
! | AATCTTAATCGAATTGCTAT+TGG | - | chr2_3:3677447-3677466 | Msa0272150:CDS | 25.0% |
!!! | ATGATGTTGATTTTGTCATA+AGG | - | chr2_3:3677586-3677605 | Msa0272150:CDS | 25.0% |
! | ATTTAGTAACTCTCTTAACT+TGG | + | chr2_3:3677662-3677681 | None:intergenic | 25.0% |
! | TAAGAGAGTTACTAAATTGA+TGG | - | chr2_3:3677665-3677684 | Msa0272150:CDS | 25.0% |
! | AATATCGTTATTTGTGATCT+AGG | + | chr2_3:3677984-3678003 | None:intergenic | 25.0% |
! | CAGCATAATTTATGATGAAA+TGG | + | chr2_3:3678016-3678035 | None:intergenic | 25.0% |
! | TGTGTTTAAAGACTATTGTT+CGG | + | chr2_3:3678163-3678182 | None:intergenic | 25.0% |
!!! | TTGTGTGCTATTTAAGTTTT+TGG | - | chr2_3:3678313-3678332 | Msa0272150:CDS | 25.0% |
!! | TTCCACTGATAAATTTTCAT+AGG | - | chr2_3:3678404-3678423 | Msa0272150:intron | 25.0% |
! | AACCTATGAAAATTTATCAG+TGG | + | chr2_3:3678409-3678428 | None:intergenic | 25.0% |
ACAAGCTTTCATTGTAAACA+AGG | - | chr2_3:3676452-3676471 | Msa0272150:CDS | 30.0% | |
TACAAAACCCATCATCATTA+TGG | - | chr2_3:3676620-3676639 | Msa0272150:CDS | 30.0% | |
AACATTAATAATGCACTTCG+TGG | + | chr2_3:3676649-3676668 | None:intergenic | 30.0% | |
! | ATGCCTTTGAGTTCATAATT+AGG | - | chr2_3:3676815-3676834 | Msa0272150:intron | 30.0% |
AAGCCTAATTATGAACTCAA+AGG | + | chr2_3:3676821-3676840 | None:intergenic | 30.0% | |
ATTTCTAAGTAACCTTTGGA+AGG | + | chr2_3:3677045-3677064 | None:intergenic | 30.0% | |
AGAAATTCTTGACAGAATCA+TGG | - | chr2_3:3677059-3677078 | Msa0272150:intron | 30.0% | |
! | TATCTTAACTTGAGTTGTGT+TGG | - | chr2_3:3677330-3677349 | Msa0272150:intron | 30.0% |
! | ATCTTAACTTGAGTTGTGTT+GGG | - | chr2_3:3677331-3677350 | Msa0272150:intron | 30.0% |
TGTTAAGATTGAGACGATTA+AGG | - | chr2_3:3677365-3677384 | Msa0272150:intron | 30.0% | |
TATTGGATCAATTTCTTGCA+AGG | - | chr2_3:3677416-3677435 | Msa0272150:intron | 30.0% | |
!!! | CTCGTGAAGATTTTTTTGTT+AGG | - | chr2_3:3677609-3677628 | Msa0272150:CDS | 30.0% |
!!! | GTGAAGATTTTTTTGTTAGG+AGG | - | chr2_3:3677612-3677631 | Msa0272150:CDS | 30.0% |
!!! | AAGATTTTTTTGTTAGGAGG+AGG | - | chr2_3:3677615-3677634 | Msa0272150:CDS | 30.0% |
ATCAATGCTTCAAATTCAGA+AGG | + | chr2_3:3677732-3677751 | None:intergenic | 30.0% | |
TGATCAATTATACATAGCCA+TGG | - | chr2_3:3677785-3677804 | Msa0272150:CDS | 30.0% | |
TGTATCTAAAGGTAAGTTAC+TGG | - | chr2_3:3677811-3677830 | Msa0272150:CDS | 30.0% | |
ATTATCTTGAAACCATACCA+CGG | + | chr2_3:3678132-3678151 | None:intergenic | 30.0% | |
! | TATCTGTTTTCTTTCGAATG+AGG | - | chr2_3:3678336-3678355 | Msa0272150:CDS | 30.0% |
! | AAATTTTCATAGGTTCATGC+AGG | - | chr2_3:3678414-3678433 | Msa0272150:intron | 30.0% |
AAGACATCTTACAAGAAACT+TGG | - | chr2_3:3678506-3678525 | Msa0272150:intron | 30.0% | |
AACTTCTTTGACTCAATGTT+TGG | - | chr2_3:3678615-3678634 | Msa0272150:intron | 30.0% | |
GTGACAACTTATCATTGTGT+TGG | + | chr2_3:3676538-3676557 | None:intergenic | 35.0% | |
!!! | TGATGATGGGTTTTGTAAGA+AGG | + | chr2_3:3676617-3676636 | None:intergenic | 35.0% |
GTGGAATCCATAATGATGAT+GGG | + | chr2_3:3676630-3676649 | None:intergenic | 35.0% | |
! | ATGTTCTGCTGCTCAATTTT+TGG | - | chr2_3:3676891-3676910 | Msa0272150:intron | 35.0% |
! | TTCTTGAAGGGATTCGTTTT+TGG | - | chr2_3:3676971-3676990 | Msa0272150:intron | 35.0% |
! | CTTTGGAAGGAAATGATTCT+TGG | + | chr2_3:3677032-3677051 | None:intergenic | 35.0% |
CAAGAATCATTTCCTTCCAA+AGG | - | chr2_3:3677030-3677049 | Msa0272150:intron | 35.0% | |
TATGGACTTGTAACAAGACA+TGG | + | chr2_3:3677111-3677130 | None:intergenic | 35.0% | |
CTGTTTGAAGAACATGTGTA+TGG | + | chr2_3:3677129-3677148 | None:intergenic | 35.0% | |
CTTGAGAAATAACTTCTCTG+AGG | - | chr2_3:3677191-3677210 | Msa0272150:intron | 35.0% | |
! | TCTTAACTTGAGTTGTGTTG+GGG | - | chr2_3:3677332-3677351 | Msa0272150:intron | 35.0% |
CTTCTCTCATTGCTTGATAT+TGG | - | chr2_3:3677399-3677418 | Msa0272150:intron | 35.0% | |
TACTTCTTCCATCTCCAAAT+GGG | - | chr2_3:3677550-3677569 | Msa0272150:CDS | 35.0% | |
TATGCATGATCTTTCCCATT+TGG | + | chr2_3:3677567-3677586 | None:intergenic | 35.0% | |
!! | ATTGATGGATTTGTTCCTTG+TGG | - | chr2_3:3677680-3677699 | Msa0272150:CDS | 35.0% |
TACCTTTAGATACATGTCCA+TGG | + | chr2_3:3677805-3677824 | None:intergenic | 35.0% | |
TTATCTTGAAACCATACCAC+GGG | + | chr2_3:3678131-3678150 | None:intergenic | 35.0% | |
CTACATCTCTGACTACATAT+TGG | + | chr2_3:3678264-3678283 | None:intergenic | 35.0% | |
CAATATGTAGTCAGAGATGT+AGG | - | chr2_3:3678262-3678281 | Msa0272150:CDS | 35.0% | |
TAGCACACAAGATTTGATCA+CGG | + | chr2_3:3678303-3678322 | None:intergenic | 35.0% | |
CAAGAACATAGATGTGAAAG+AGG | - | chr2_3:3678647-3678666 | Msa0272150:intron | 35.0% | |
AGGATGTTGAAGAGATAAAG+AGG | - | chr2_3:3678667-3678686 | Msa0272150:intron | 35.0% | |
GTTGAAGAGATAAAGAGGTA+TGG | - | chr2_3:3678672-3678691 | Msa0272150:intron | 35.0% | |
! | GATAAAGAGGTATGGAGAAT+TGG | - | chr2_3:3678680-3678699 | Msa0272150:intron | 35.0% |
AATTGGAAGGAATGGAATGT+GGG | - | chr2_3:3678697-3678716 | Msa0272150:intron | 35.0% | |
CGTGGAATCCATAATGATGA+TGG | + | chr2_3:3676631-3676650 | None:intergenic | 40.0% | |
AGAACATAGCATGGACACAT+TGG | + | chr2_3:3676878-3676897 | None:intergenic | 40.0% | |
!! | TGCTGCTCAATTTTTGGAGA+TGG | - | chr2_3:3676897-3676916 | Msa0272150:intron | 40.0% |
! | ACCAAGTTTGAAGCCTCATA+TGG | - | chr2_3:3676942-3676961 | Msa0272150:intron | 40.0% |
TCCATATGAGGCTTCAAACT+TGG | + | chr2_3:3676946-3676965 | None:intergenic | 40.0% | |
!! | AAGGGATTCGTTTTTGGACT+TGG | - | chr2_3:3676977-3676996 | Msa0272150:intron | 40.0% |
! | TTGGACTTGGTTTGAACTCA+TGG | - | chr2_3:3676990-3677009 | Msa0272150:intron | 40.0% |
TGCTTGTGTCACAAGAAAAC+TGG | + | chr2_3:3677161-3677180 | None:intergenic | 40.0% | |
!! | ATAACTTCTCTGAGGCTACA+TGG | - | chr2_3:3677199-3677218 | Msa0272150:intron | 40.0% |
! | AAGTCTTATAGGTCCTCTGT+TGG | - | chr2_3:3677506-3677525 | Msa0272150:CDS | 40.0% |
! | ATTGTTGCTTGATCCAACAG+AGG | + | chr2_3:3677522-3677541 | None:intergenic | 40.0% |
CTACTTCTTCCATCTCCAAA+TGG | - | chr2_3:3677549-3677568 | Msa0272150:CDS | 40.0% | |
TGATCTTTCCCATTTGGAGA+TGG | + | chr2_3:3677561-3677580 | None:intergenic | 40.0% | |
ATGCTTCAAATTCAGAAGGC+TGG | + | chr2_3:3677728-3677747 | None:intergenic | 40.0% | |
AGCCATGGACATGTATCTAA+AGG | - | chr2_3:3677800-3677819 | Msa0272150:CDS | 40.0% | |
! | GTGATCTAGGCCATAGTTTT+AGG | + | chr2_3:3677971-3677990 | None:intergenic | 40.0% |
TCTACTTCTAGCCTGATAAG+CGG | - | chr2_3:3678081-3678100 | Msa0272150:CDS | 40.0% | |
TATCTTGAAACCATACCACG+GGG | + | chr2_3:3678130-3678149 | None:intergenic | 40.0% | |
TTTCTTGTGACATCTTCTCG+TGG | + | chr2_3:3678482-3678501 | None:intergenic | 40.0% | |
!!! | GCTCTTGGTTTTGTTTCTGA+AGG | + | chr2_3:3678537-3678556 | None:intergenic | 40.0% |
! | AAGAGGTATGGAGAATTGGA+AGG | - | chr2_3:3678684-3678703 | Msa0272150:intron | 40.0% |
GTATGGAGAATTGGAAGGAA+TGG | - | chr2_3:3678689-3678708 | Msa0272150:intron | 40.0% | |
GAATTGGAAGGAATGGAATG+TGG | - | chr2_3:3678696-3678715 | Msa0272150:intron | 40.0% | |
CTTCTTTACACAAGCCAGAT+GGG | + | chr2_3:3678724-3678743 | None:intergenic | 40.0% | |
ACTTCTTTACACAAGCCAGA+TGG | + | chr2_3:3678725-3678744 | None:intergenic | 40.0% | |
! | TGGCTTGTGTAAAGAAGTCA+GGG | - | chr2_3:3678727-3678746 | Msa0272150:intron | 40.0% |
!! | TGGAGTTTGCTGTGAACTTG+AGG | - | chr2_3:3676413-3676432 | Msa0272150:three_prime_UTR | 45.0% |
TACTGCAAGCATGTCACAAG+TGG | - | chr2_3:3676590-3676609 | Msa0272150:CDS | 45.0% | |
TTGCTACAATAGCAGCAGCA+TGG | - | chr2_3:3676840-3676859 | Msa0272150:intron | 45.0% | |
TTGAGCAGCAGAACATAGCA+TGG | + | chr2_3:3676887-3676906 | None:intergenic | 45.0% | |
GTCACAAGAAAACTGGAAGC+TGG | + | chr2_3:3677154-3677173 | None:intergenic | 45.0% | |
AATTCAGAAGGCTGGAGATG+AGG | + | chr2_3:3677720-3677739 | None:intergenic | 45.0% | |
CGCAGACACACCTAAAACTA+TGG | - | chr2_3:3677958-3677977 | Msa0272150:CDS | 45.0% | |
CTACTTCTAGCCTGATAAGC+GGG | - | chr2_3:3678082-3678101 | Msa0272150:CDS | 45.0% | |
ATCTTGAAACCATACCACGG+GGG | + | chr2_3:3678129-3678148 | None:intergenic | 45.0% | |
AGTCAGAGATGTAGGCACAT+TGG | - | chr2_3:3678270-3678289 | Msa0272150:CDS | 45.0% | |
TCATAGGTTCATGCAGGCAT+AGG | - | chr2_3:3678420-3678439 | Msa0272150:intron | 45.0% | |
TCATGCAGGCATAGGTGAAA+AGG | - | chr2_3:3678428-3678447 | Msa0272150:intron | 45.0% | |
TGTCTAGTGACATGAGCTCT+TGG | + | chr2_3:3678552-3678571 | None:intergenic | 45.0% | |
! | CTGGCTTGTGTAAAGAAGTC+AGG | - | chr2_3:3678726-3678745 | Msa0272150:intron | 45.0% |
GGCTTGTGTAAAGAAGTCAG+GGG | - | chr2_3:3678728-3678747 | Msa0272150:intron | 45.0% | |
!!! | ATGATATTTTTTATTTTTTT+TGG | - | chr2_3:3676762-3676781 | Msa0272150:CDS | 5.0% |
!! | ACTTCTCTGAGGCTACATGG+TGG | - | chr2_3:3677202-3677221 | Msa0272150:intron | 50.0% |
GATCAGGAGCAACTTCCACA+AGG | + | chr2_3:3677698-3677717 | None:intergenic | 50.0% | |
ATTGGAAATCCCCCGTGGTA+TGG | - | chr2_3:3678117-3678136 | Msa0272150:CDS | 50.0% | |
AATGGAATGTGGGACCCATC+TGG | - | chr2_3:3678707-3678726 | Msa0272150:intron | 50.0% | |
GAAGGCTGGAGATGAGGATC+AGG | + | chr2_3:3677714-3677733 | None:intergenic | 55.0% | |
AGTTCTCCCAGATGCTGCGA+GGG | - | chr2_3:3677755-3677774 | Msa0272150:CDS | 55.0% | |
CAGTTCTCCCAGATGCTGCG+AGG | - | chr2_3:3677754-3677773 | Msa0272150:CDS | 60.0% | |
GCGATTCCCTCGCAGCATCT+GGG | + | chr2_3:3677764-3677783 | None:intergenic | 60.0% | |
TGCGATTCCCTCGCAGCATC+TGG | + | chr2_3:3677765-3677784 | None:intergenic | 60.0% | |
GCGTGACAAGCCCGCTTATC+AGG | + | chr2_3:3678095-3678114 | None:intergenic | 60.0% | |
! | AGCGGGCTTGTCACGCGAAT+TGG | - | chr2_3:3678099-3678118 | Msa0272150:CDS | 60.0% |
CGCGAATTGGAAATCCCCCG+TGG | - | chr2_3:3678112-3678131 | Msa0272150:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 3676391 | 3678850 | 3676391 | ID=Msa0272150;Name=Msa0272150 |
chr2_3 | mRNA | 3676391 | 3678850 | 3676391 | ID=Msa0272150-mRNA-1;Parent=Msa0272150;Name=Msa0272150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0|0.33|3|50|445 |
chr2_3 | exon | 3676391 | 3676815 | 3676391 | ID=Msa0272150-mRNA-1:exon:1818;Parent=Msa0272150-mRNA-1 |
chr2_3 | exon | 3677420 | 3678404 | 3677420 | ID=Msa0272150-mRNA-1:exon:1817;Parent=Msa0272150-mRNA-1 |
chr2_3 | exon | 3678768 | 3678850 | 3678768 | ID=Msa0272150-mRNA-1:exon:1816;Parent=Msa0272150-mRNA-1 |
chr2_3 | five_prime_UTR | 3678768 | 3678850 | 3678768 | ID=Msa0272150-mRNA-1:five_prime_utr;Parent=Msa0272150-mRNA-1 |
chr2_3 | five_prime_UTR | 3678383 | 3678404 | 3678383 | ID=Msa0272150-mRNA-1:five_prime_utr;Parent=Msa0272150-mRNA-1 |
chr2_3 | CDS | 3677420 | 3678382 | 3677420 | ID=Msa0272150-mRNA-1:cds;Parent=Msa0272150-mRNA-1 |
chr2_3 | CDS | 3676441 | 3676815 | 3676441 | ID=Msa0272150-mRNA-1:cds;Parent=Msa0272150-mRNA-1 |
chr2_3 | three_prime_UTR | 3676391 | 3676440 | 3676391 | ID=Msa0272150-mRNA-1:three_prime_utr;Parent=Msa0272150-mRNA-1 |
Gene Sequence |
Protein sequence |