AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0272150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272150 MtrunA17_Chr2g0280541 95.730 445 19 0 1 445 1 445 0.0 880
Msa0272150 MtrunA17_Chr4g0023801 37.214 481 254 12 3 445 75 545 2.82e-94 294
Msa0272150 MtrunA17_Chr4g0037661 28.429 401 256 8 1 375 74 469 2.06e-43 160
Msa0272150 MtrunA17_Chr1g0163311 29.557 406 241 12 1 373 67 460 1.19e-42 157
Msa0272150 MtrunA17_Chr1g0195911 27.739 429 259 7 1 393 102 515 3.71e-36 140
Msa0272150 MtrunA17_Chr8g0374011 30.424 401 230 7 1 358 106 500 1.70e-35 139
Msa0272150 MtrunA17_Chr1g0199631 30.633 395 230 10 1 358 57 444 2.88e-34 134
Msa0272150 MtrunA17_Chr1g0191711 27.763 371 222 9 2 358 129 467 1.90e-33 132
Msa0272150 MtrunA17_Chr2g0320691 26.700 397 247 9 1 358 91 482 3.09e-33 132
Msa0272150 MtrunA17_Chr2g0303541 28.288 403 238 8 1 358 93 489 5.25e-33 131
Msa0272150 MtrunA17_Chr4g0010091 28.173 394 229 8 2 358 101 477 1.22e-32 130
Msa0272150 MtrunA17_Chr2g0279481 26.477 457 258 12 1 385 110 560 1.50e-32 130
Msa0272150 MtrunA17_Chr8g0382231 24.062 453 263 11 1 401 119 542 1.03e-31 127
Msa0272150 MtrunA17_Chr4g0050021 25.607 453 272 8 1 391 110 559 2.44e-31 127
Msa0272150 MtrunA17_Chr7g0268781 26.606 436 258 11 1 393 102 518 3.17e-31 126
Msa0272150 MtrunA17_Chr7g0245201 29.227 414 229 12 2 374 129 519 2.81e-30 123
Msa0272150 MtrunA17_Chr5g0401341 27.968 379 247 9 3 358 94 469 7.73e-29 119
Msa0272150 MtrunA17_Chr2g0285511 28.058 417 249 12 1 375 94 501 2.37e-28 117
Msa0272150 MtrunA17_Chr1g0207461 25.907 386 251 9 3 359 96 475 6.92e-27 113
Msa0272150 MtrunA17_Chr4g0076521 26.121 379 241 12 8 361 100 464 2.00e-26 112
Msa0272150 MtrunA17_Chr5g0401451 25.806 403 255 11 2 374 107 495 2.61e-26 112
Msa0272150 MtrunA17_Chr3g0108331 26.667 390 219 12 2 358 91 446 2.32e-25 108
Msa0272150 MtrunA17_Chr4g0053841 25.935 401 254 9 2 374 82 467 1.71e-24 106
Msa0272150 MtrunA17_Chr1g0150191 26.943 386 250 9 1 358 93 474 4.41e-24 105
Msa0272150 MtrunA17_Chr5g0432861 25.313 399 222 11 2 358 92 456 4.40e-23 102
Msa0272150 MtrunA17_Chr1g0181181 25.581 473 268 15 1 420 94 535 1.23e-22 100
Msa0272150 MtrunA17_Chr2g0332281 30.153 262 152 7 122 358 24 279 2.55e-21 95.9
Msa0272150 MtrunA17_Chr4g0003891 28.159 277 181 6 114 373 39 314 5.03e-20 92.0
Msa0272150 MtrunA17_Chr5g0412591 27.195 353 191 9 67 358 128 475 6.45e-20 92.4
Msa0272150 MtrunA17_Chr2g0290741 25.654 382 229 13 8 361 100 454 6.15e-19 89.4
Msa0272150 MtrunA17_Chr8g0367891 23.704 405 235 11 1 358 93 470 2.66e-16 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272150 AT3G22104.4 40.947 359 193 4 6 359 3 347 8.38e-86 269
Msa0272150 AT3G22104.2 40.947 359 193 4 6 359 3 347 8.38e-86 269
Msa0272150 AT3G22104.3 40.947 359 193 4 6 359 3 347 8.38e-86 269
Msa0272150 AT3G22104.1 40.947 359 193 4 6 359 78 422 1.11e-84 269
Msa0272150 AT3G19850.1 29.723 397 233 9 6 370 81 463 5.99e-47 170
Msa0272150 AT3G08570.1 28.922 408 243 9 2 377 103 495 5.61e-35 137
Msa0272150 AT5G48800.1 29.412 374 236 7 2 358 108 470 6.42e-35 137
Msa0272150 AT2G47860.1 28.675 415 243 9 1 377 100 499 2.06e-33 133
Msa0272150 AT1G50280.2 28.351 388 249 9 6 369 48 430 2.28e-33 131
Msa0272150 AT5G66560.4 30.556 396 229 9 1 358 90 477 2.92e-33 132
Msa0272150 AT1G50280.1 28.351 388 249 9 6 369 81 463 3.03e-33 131
Msa0272150 AT5G03250.1 28.469 418 250 10 1 375 94 505 3.14e-33 132
Msa0272150 AT2G47860.3 28.675 415 243 9 1 377 123 522 3.47e-33 132
Msa0272150 AT5G66560.1 30.556 396 229 9 1 358 129 516 3.62e-33 132
Msa0272150 AT5G66560.3 30.556 396 229 9 1 358 100 487 4.46e-33 132
Msa0272150 AT3G08660.3 28.788 396 238 8 2 377 40 411 5.39e-32 128
Msa0272150 AT3G08660.1 28.788 396 238 8 2 377 100 471 1.09e-31 127
Msa0272150 AT2G47860.5 29.794 339 195 6 77 377 48 381 5.95e-30 122
Msa0272150 AT2G47860.2 29.794 339 195 6 77 377 48 381 5.95e-30 122
Msa0272150 AT1G30440.1 28.784 403 240 9 1 358 94 494 7.81e-30 122
Msa0272150 AT1G03010.3 27.187 423 249 10 1 377 98 507 9.47e-30 122
Msa0272150 AT1G03010.2 27.187 423 249 10 1 377 72 481 1.02e-29 122
Msa0272150 AT1G03010.1 27.187 423 249 10 1 377 99 508 1.41e-29 122
Msa0272150 AT5G03250.2 27.676 383 230 9 36 375 15 393 5.62e-29 119
Msa0272150 AT3G50840.2 30.318 409 244 10 5 388 52 444 1.34e-28 118
Msa0272150 AT3G50840.3 30.318 409 244 10 5 388 52 444 1.34e-28 118
Msa0272150 AT3G50840.1 29.630 405 252 9 5 388 88 480 1.94e-28 118
Msa0272150 AT2G30520.2 26.478 389 224 10 2 358 49 407 1.28e-27 115
Msa0272150 AT2G30520.3 26.478 389 224 10 2 358 49 407 1.28e-27 115
Msa0272150 AT2G30520.1 26.478 389 224 10 2 358 97 455 1.62e-27 115
Msa0272150 AT5G67385.4 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0272150 AT5G67385.5 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0272150 AT5G67385.2 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0272150 AT5G67385.3 26.817 399 251 11 2 374 48 431 3.74e-27 114
Msa0272150 AT5G66560.2 31.111 360 202 9 1 322 129 480 4.82e-27 113
Msa0272150 AT5G67385.1 26.817 399 251 11 2 374 93 476 6.05e-27 114
Msa0272150 AT5G47800.3 26.579 380 239 9 8 361 100 465 1.03e-26 113
Msa0272150 AT5G47800.1 26.579 380 239 9 8 361 100 465 1.03e-26 113
Msa0272150 AT5G47800.4 26.579 380 239 9 8 361 100 465 1.03e-26 113
Msa0272150 AT5G47800.2 26.579 380 239 9 8 361 213 578 1.88e-26 112
Msa0272150 AT3G44820.1 24.205 409 254 8 1 358 92 495 2.14e-26 112
Msa0272150 AT3G49970.1 27.838 370 212 11 2 354 60 391 3.57e-26 111
Msa0272150 AT3G49970.2 27.838 370 212 11 2 354 60 391 3.57e-26 111
Msa0272150 AT2G47860.4 29.444 360 201 9 1 322 100 444 6.45e-26 109
Msa0272150 AT2G47860.6 29.444 360 201 9 1 322 123 467 7.09e-26 110
Msa0272150 AT2G23050.1 26.230 366 231 8 3 358 100 436 1.22e-23 103
Msa0272150 AT3G08660.2 28.448 348 205 8 2 329 100 423 1.52e-23 102
Msa0272150 AT5G13600.1 25.298 419 256 12 1 375 91 496 1.68e-23 103
Msa0272150 AT2G14820.2 24.416 385 257 8 3 358 95 474 1.23e-22 101
Msa0272150 AT2G14820.1 24.416 385 257 8 3 358 95 474 1.23e-22 101
Msa0272150 AT2G23050.2 27.586 290 186 6 79 358 45 320 1.46e-20 93.2
Msa0272150 AT5G10250.2 28.444 225 136 5 173 379 296 513 7.50e-20 92.8
Msa0272150 AT5G67440.3 25.995 377 246 11 3 358 98 462 1.85e-19 91.3
Msa0272150 AT5G67440.1 25.995 377 246 11 3 358 98 462 1.85e-19 91.3
Msa0272150 AT5G67440.2 25.995 377 246 11 3 358 61 425 2.41e-19 90.9
Msa0272150 AT4G37590.1 25.613 367 241 10 3 358 106 451 5.74e-19 90.1
Msa0272150 AT3G26490.1 25.225 444 274 13 1 395 95 529 8.59e-19 89.4
Msa0272150 AT3G26490.3 25.225 444 274 13 1 395 95 529 8.59e-19 89.4
Msa0272150 AT3G26490.4 25.225 444 274 13 1 395 95 529 8.59e-19 89.4
Msa0272150 AT5G10250.1 28.505 214 135 5 173 379 296 498 2.24e-18 88.2
Msa0272150 AT1G52770.1 32.292 192 117 3 189 373 119 304 1.15e-17 85.5
Msa0272150 AT5G64330.1 30.198 202 109 3 189 358 390 591 1.42e-17 85.9
Msa0272150 AT5G64330.3 30.198 202 109 3 189 358 331 532 1.59e-17 85.5
Msa0272150 AT5G64330.2 30.198 202 109 3 189 358 390 591 1.78e-17 85.5
Msa0272150 AT5G48130.1 25.000 360 251 9 7 358 107 455 1.87e-17 85.5
Msa0272150 AT4G31820.2 22.798 386 242 11 3 358 42 401 1.54e-16 82.4
Msa0272150 AT4G31820.1 22.798 386 242 11 3 358 95 454 1.74e-16 82.4
Msa0272150 AT3G15570.1 33.333 177 105 3 189 358 124 294 1.98e-16 81.6
Msa0272150 AT1G67900.5 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0272150 AT1G67900.1 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0272150 AT1G67900.3 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0272150 AT1G67900.6 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0272150 AT1G67900.2 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0272150 AT1G67900.4 24.163 418 246 11 1 358 89 495 1.32e-15 79.7
Msa0272150 AT3G03510.1 24.722 449 266 16 1 427 20 418 9.75e-14 73.2

Find 73 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTTTCATATTTGTTTC+TGG 0.163326 2_3:-3676416 Msa0272150:three_prime_UTR
AATAATCATGAACAAAATTT+TGG 0.186168 2_3:+3676436 None:intergenic
CTTCTCTCATTGCTTGATAT+TGG 0.269406 2_3:-3677820 Msa0272150:CDS
TAAGAGAGTTACTAAATTGA+TGG 0.270336 2_3:-3677554 Msa0272150:CDS
ATCTTAACTTGAGTTGTGTT+GGG 0.271399 2_3:-3677888 Msa0272150:CDS
CTTTGGAAGGAAATGATTCT+TGG 0.276322 2_3:+3678190 None:intergenic
TGCGATTCCCTCGCAGCATC+TGG 0.298927 2_3:+3677457 None:intergenic
GATAAAGAGGTATGGAGAAT+TGG 0.308656 2_3:-3676539 Msa0272150:CDS
TGTTAAGATTGAGACGATTA+AGG 0.322350 2_3:-3677854 Msa0272150:CDS
AACTTCTTTGACTCAATGTT+TGG 0.334568 2_3:-3676604 Msa0272150:CDS
AATCTTAATCGAATTGCTAT+TGG 0.350422 2_3:-3677772 Msa0272150:CDS
AAGAATTTCTAAGTAACCTT+TGG 0.354279 2_3:+3678173 None:intergenic
AATATTAATTTATGAACAAT+TGG 0.357226 2_3:-3678826 Msa0272150:five_prime_UTR
TATGCATGATCTTTCCCATT+TGG 0.362344 2_3:+3677655 None:intergenic
AACAATATAGAAAGTCTTAT+AGG 0.376145 2_3:-3677724 Msa0272150:CDS
TGCTTGTGTCACAAGAAAAC+TGG 0.377089 2_3:+3678061 None:intergenic
TATCTTAACTTGAGTTGTGT+TGG 0.389129 2_3:-3677889 Msa0272150:CDS
CTGGCTTGTGTAAAGAAGTC+AGG 0.412840 2_3:-3676493 Msa0272150:CDS
GAAGGCTGGAGATGAGGATC+AGG 0.415316 2_3:+3677508 None:intergenic
CTACTTCTTCCATCTCCAAA+TGG 0.419857 2_3:-3677670 Msa0272150:CDS
TCCATATGAGGCTTCAAACT+TGG 0.429267 2_3:+3678276 None:intergenic
TTGGACTTGGTTTGAACTCA+TGG 0.448896 2_3:-3678229 Msa0272150:CDS
AGAAATTCTTGACAGAATCA+TGG 0.453296 2_3:-3678160 Msa0272150:CDS
AATGGAATGTGGGACCCATC+TGG 0.457405 2_3:-3676512 Msa0272150:CDS
GTTGAAGAGATAAAGAGGTA+TGG 0.458167 2_3:-3676547 Msa0272150:CDS
ATTTGTTAGACAATGTCATA+AGG 0.461079 2_3:-3677966 Msa0272150:CDS
ATTTAGTAACTCTCTTAACT+TGG 0.462016 2_3:+3677560 None:intergenic
ACCAAGTTTGAAGCCTCATA+TGG 0.471749 2_3:-3678277 Msa0272150:CDS
GTATGGAGAATTGGAAGGAA+TGG 0.482357 2_3:-3676530 Msa0272150:CDS
AGGATGTTGAAGAGATAAAG+AGG 0.487290 2_3:-3676552 Msa0272150:CDS
ATGCTTCAAATTCAGAAGGC+TGG 0.488106 2_3:+3677494 None:intergenic
TATTGGATCAATTTCTTGCA+AGG 0.490862 2_3:-3677803 Msa0272150:CDS
TACTTCTTCCATCTCCAAAT+GGG 0.494724 2_3:-3677669 Msa0272150:CDS
TGTCTAGTGACATGAGCTCT+TGG 0.498662 2_3:+3676670 None:intergenic
TCATGCAGGCATAGGTGAAA+AGG 0.500065 2_3:-3676791 Msa0272150:CDS
AAGACATCTTACAAGAAACT+TGG 0.503196 2_3:-3676713 Msa0272150:CDS
CAAGAACATAGATGTGAAAG+AGG 0.507528 2_3:-3676572 Msa0272150:CDS
CAAGAATCATTTCCTTCCAA+AGG 0.510512 2_3:-3678189 Msa0272150:CDS
CTGTTTGAAGAACATGTGTA+TGG 0.510698 2_3:+3678093 None:intergenic
TCATAGGTTCATGCAGGCAT+AGG 0.518428 2_3:-3676799 Msa0272150:intron
CTTCTTTACACAAGCCAGAT+GGG 0.520558 2_3:+3676498 None:intergenic
GTCACAAGAAAACTGGAAGC+TGG 0.528319 2_3:+3678068 None:intergenic
TCTTAACTTGAGTTGTGTTG+GGG 0.536862 2_3:-3677887 Msa0272150:CDS
ATTTCTAAGTAACCTTTGGA+AGG 0.544773 2_3:+3678177 None:intergenic
ATAACTTCTCTGAGGCTACA+TGG 0.547407 2_3:-3678020 Msa0272150:CDS
TGATCTTTCCCATTTGGAGA+TGG 0.548740 2_3:+3677661 None:intergenic
GAATTGGAAGGAATGGAATG+TGG 0.550446 2_3:-3676523 Msa0272150:CDS
AGCCATGGACATGTATCTAA+AGG 0.550561 2_3:-3677419 Msa0272150:intron
ACTTCTTTACACAAGCCAGA+TGG 0.554159 2_3:+3676497 None:intergenic
AAGTCTTATAGGTCCTCTGT+TGG 0.561210 2_3:-3677713 Msa0272150:CDS
ATCAATGCTTCAAATTCAGA+AGG 0.564510 2_3:+3677490 None:intergenic
TGGCTTGTGTAAAGAAGTCA+GGG 0.569595 2_3:-3676492 Msa0272150:CDS
GCGATTCCCTCGCAGCATCT+GGG 0.575559 2_3:+3677458 None:intergenic
AGAACATAGCATGGACACAT+TGG 0.577656 2_3:+3678344 None:intergenic
TGATCAATTATACATAGCCA+TGG 0.587189 2_3:-3677434 Msa0272150:CDS
TTTCTTGTGACATCTTCTCG+TGG 0.587506 2_3:+3676740 None:intergenic
AGTTCTCCCAGATGCTGCGA+GGG 0.592260 2_3:-3677464 Msa0272150:CDS
TACCTTTAGATACATGTCCA+TGG 0.593742 2_3:+3677417 None:intergenic
AATTCAGAAGGCTGGAGATG+AGG 0.594161 2_3:+3677502 None:intergenic
ACAAGCTTTCATTGTAAACA+AGG 0.597814 2_3:-3678767 Msa0272150:intron
TTGCTACAATAGCAGCAGCA+TGG 0.599645 2_3:-3678379 Msa0272150:exon
TTGAGCAGCAGAACATAGCA+TGG 0.601035 2_3:+3678335 None:intergenic
TGGAGTTTGCTGTGAACTTG+AGG 0.605340 2_3:-3678806 Msa0272150:five_prime_UTR
AAGAGGTATGGAGAATTGGA+AGG 0.605606 2_3:-3676535 Msa0272150:CDS
AATTGGAAGGAATGGAATGT+GGG 0.609226 2_3:-3676522 Msa0272150:CDS
ATTGATGGATTTGTTCCTTG+TGG 0.613773 2_3:-3677539 Msa0272150:CDS
TATGGACTTGTAACAAGACA+TGG 0.645211 2_3:+3678111 None:intergenic
CAGTTCTCCCAGATGCTGCG+AGG 0.652508 2_3:-3677465 Msa0272150:CDS
GATCAGGAGCAACTTCCACA+AGG 0.673647 2_3:+3677524 None:intergenic
CTTGAGAAATAACTTCTCTG+AGG 0.684042 2_3:-3678028 Msa0272150:CDS
ATTGTTGCTTGATCCAACAG+AGG 0.696020 2_3:+3677700 None:intergenic
ACTTCTCTGAGGCTACATGG+TGG 0.749190 2_3:-3678017 Msa0272150:CDS
GGCTTGTGTAAAGAAGTCAG+GGG 0.777448 2_3:-3676491 Msa0272150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATTTATGAACAAT+TGG - chr2_3:3676393-3676412 Msa0272150:three_prime_UTR 10.0%
!! AAAAATAAAAAATATCATCA+TGG + chr2_3:3676760-3676779 None:intergenic 10.0%
!! ATAATATTAAGAATCATAAA+GGG + chr2_3:3677903-3677922 None:intergenic 10.0%
!! AATAATATTAAGAATCATAA+AGG + chr2_3:3677904-3677923 None:intergenic 10.0%
!!! TTTGAAATAATAAATCATCA+GGG + chr2_3:3676694-3676713 None:intergenic 15.0%
!!! ATTTGAAATAATAAATCATC+AGG + chr2_3:3676695-3676714 None:intergenic 15.0%
!!! AATAATCATGAACAAAATTT+TGG + chr2_3:3678786-3678805 None:intergenic 15.0%
!!! TTCAAATTCTCAATCTTTTA+TGG - chr2_3:3676708-3676727 Msa0272150:CDS 20.0%
!! ATGTGATAAAATTCATCATA+TGG + chr2_3:3676797-3676816 None:intergenic 20.0%
!!! ATATGGAAAATTTTCTTGAA+GGG - chr2_3:3676959-3676978 Msa0272150:intron 20.0%
!!! AACAATATAGAAAGTCTTAT+AGG - chr2_3:3677495-3677514 Msa0272150:CDS 20.0%
!!! ATTGTACAAGATTTTAAGTT+AGG - chr2_3:3677869-3677888 Msa0272150:CDS 20.0%
!!! ATTAGTTTCATATTTGTTTC+TGG - chr2_3:3678803-3678822 Msa0272150:five_prime_UTR 20.0%
!!! CTTGCAGTATTTTTTAATCA+TGG + chr2_3:3676579-3676598 None:intergenic 25.0%
!! TCAAGAAAATTTTCCATATG+AGG + chr2_3:3676958-3676977 None:intergenic 25.0%
!! CATATGGAAAATTTTCTTGA+AGG - chr2_3:3676958-3676977 Msa0272150:intron 25.0%
! AAGAATTTCTAAGTAACCTT+TGG + chr2_3:3677049-3677068 None:intergenic 25.0%
!! ATTTGTTAGACAATGTCATA+AGG - chr2_3:3677253-3677272 Msa0272150:intron 25.0%
! AATCTTAATCGAATTGCTAT+TGG - chr2_3:3677447-3677466 Msa0272150:CDS 25.0%
!!! ATGATGTTGATTTTGTCATA+AGG - chr2_3:3677586-3677605 Msa0272150:CDS 25.0%
! ATTTAGTAACTCTCTTAACT+TGG + chr2_3:3677662-3677681 None:intergenic 25.0%
! TAAGAGAGTTACTAAATTGA+TGG - chr2_3:3677665-3677684 Msa0272150:CDS 25.0%
! AATATCGTTATTTGTGATCT+AGG + chr2_3:3677984-3678003 None:intergenic 25.0%
! CAGCATAATTTATGATGAAA+TGG + chr2_3:3678016-3678035 None:intergenic 25.0%
! TGTGTTTAAAGACTATTGTT+CGG + chr2_3:3678163-3678182 None:intergenic 25.0%
!!! TTGTGTGCTATTTAAGTTTT+TGG - chr2_3:3678313-3678332 Msa0272150:CDS 25.0%
!! TTCCACTGATAAATTTTCAT+AGG - chr2_3:3678404-3678423 Msa0272150:intron 25.0%
! AACCTATGAAAATTTATCAG+TGG + chr2_3:3678409-3678428 None:intergenic 25.0%
ACAAGCTTTCATTGTAAACA+AGG - chr2_3:3676452-3676471 Msa0272150:CDS 30.0%
TACAAAACCCATCATCATTA+TGG - chr2_3:3676620-3676639 Msa0272150:CDS 30.0%
AACATTAATAATGCACTTCG+TGG + chr2_3:3676649-3676668 None:intergenic 30.0%
! ATGCCTTTGAGTTCATAATT+AGG - chr2_3:3676815-3676834 Msa0272150:intron 30.0%
AAGCCTAATTATGAACTCAA+AGG + chr2_3:3676821-3676840 None:intergenic 30.0%
ATTTCTAAGTAACCTTTGGA+AGG + chr2_3:3677045-3677064 None:intergenic 30.0%
AGAAATTCTTGACAGAATCA+TGG - chr2_3:3677059-3677078 Msa0272150:intron 30.0%
! TATCTTAACTTGAGTTGTGT+TGG - chr2_3:3677330-3677349 Msa0272150:intron 30.0%
! ATCTTAACTTGAGTTGTGTT+GGG - chr2_3:3677331-3677350 Msa0272150:intron 30.0%
TGTTAAGATTGAGACGATTA+AGG - chr2_3:3677365-3677384 Msa0272150:intron 30.0%
TATTGGATCAATTTCTTGCA+AGG - chr2_3:3677416-3677435 Msa0272150:intron 30.0%
!!! CTCGTGAAGATTTTTTTGTT+AGG - chr2_3:3677609-3677628 Msa0272150:CDS 30.0%
!!! GTGAAGATTTTTTTGTTAGG+AGG - chr2_3:3677612-3677631 Msa0272150:CDS 30.0%
!!! AAGATTTTTTTGTTAGGAGG+AGG - chr2_3:3677615-3677634 Msa0272150:CDS 30.0%
ATCAATGCTTCAAATTCAGA+AGG + chr2_3:3677732-3677751 None:intergenic 30.0%
TGATCAATTATACATAGCCA+TGG - chr2_3:3677785-3677804 Msa0272150:CDS 30.0%
TGTATCTAAAGGTAAGTTAC+TGG - chr2_3:3677811-3677830 Msa0272150:CDS 30.0%
ATTATCTTGAAACCATACCA+CGG + chr2_3:3678132-3678151 None:intergenic 30.0%
! TATCTGTTTTCTTTCGAATG+AGG - chr2_3:3678336-3678355 Msa0272150:CDS 30.0%
! AAATTTTCATAGGTTCATGC+AGG - chr2_3:3678414-3678433 Msa0272150:intron 30.0%
AAGACATCTTACAAGAAACT+TGG - chr2_3:3678506-3678525 Msa0272150:intron 30.0%
AACTTCTTTGACTCAATGTT+TGG - chr2_3:3678615-3678634 Msa0272150:intron 30.0%
GTGACAACTTATCATTGTGT+TGG + chr2_3:3676538-3676557 None:intergenic 35.0%
!!! TGATGATGGGTTTTGTAAGA+AGG + chr2_3:3676617-3676636 None:intergenic 35.0%
GTGGAATCCATAATGATGAT+GGG + chr2_3:3676630-3676649 None:intergenic 35.0%
! ATGTTCTGCTGCTCAATTTT+TGG - chr2_3:3676891-3676910 Msa0272150:intron 35.0%
! TTCTTGAAGGGATTCGTTTT+TGG - chr2_3:3676971-3676990 Msa0272150:intron 35.0%
! CTTTGGAAGGAAATGATTCT+TGG + chr2_3:3677032-3677051 None:intergenic 35.0%
CAAGAATCATTTCCTTCCAA+AGG - chr2_3:3677030-3677049 Msa0272150:intron 35.0%
TATGGACTTGTAACAAGACA+TGG + chr2_3:3677111-3677130 None:intergenic 35.0%
CTGTTTGAAGAACATGTGTA+TGG + chr2_3:3677129-3677148 None:intergenic 35.0%
CTTGAGAAATAACTTCTCTG+AGG - chr2_3:3677191-3677210 Msa0272150:intron 35.0%
! TCTTAACTTGAGTTGTGTTG+GGG - chr2_3:3677332-3677351 Msa0272150:intron 35.0%
CTTCTCTCATTGCTTGATAT+TGG - chr2_3:3677399-3677418 Msa0272150:intron 35.0%
TACTTCTTCCATCTCCAAAT+GGG - chr2_3:3677550-3677569 Msa0272150:CDS 35.0%
TATGCATGATCTTTCCCATT+TGG + chr2_3:3677567-3677586 None:intergenic 35.0%
!! ATTGATGGATTTGTTCCTTG+TGG - chr2_3:3677680-3677699 Msa0272150:CDS 35.0%
TACCTTTAGATACATGTCCA+TGG + chr2_3:3677805-3677824 None:intergenic 35.0%
TTATCTTGAAACCATACCAC+GGG + chr2_3:3678131-3678150 None:intergenic 35.0%
CTACATCTCTGACTACATAT+TGG + chr2_3:3678264-3678283 None:intergenic 35.0%
CAATATGTAGTCAGAGATGT+AGG - chr2_3:3678262-3678281 Msa0272150:CDS 35.0%
TAGCACACAAGATTTGATCA+CGG + chr2_3:3678303-3678322 None:intergenic 35.0%
CAAGAACATAGATGTGAAAG+AGG - chr2_3:3678647-3678666 Msa0272150:intron 35.0%
AGGATGTTGAAGAGATAAAG+AGG - chr2_3:3678667-3678686 Msa0272150:intron 35.0%
GTTGAAGAGATAAAGAGGTA+TGG - chr2_3:3678672-3678691 Msa0272150:intron 35.0%
! GATAAAGAGGTATGGAGAAT+TGG - chr2_3:3678680-3678699 Msa0272150:intron 35.0%
AATTGGAAGGAATGGAATGT+GGG - chr2_3:3678697-3678716 Msa0272150:intron 35.0%
CGTGGAATCCATAATGATGA+TGG + chr2_3:3676631-3676650 None:intergenic 40.0%
AGAACATAGCATGGACACAT+TGG + chr2_3:3676878-3676897 None:intergenic 40.0%
!! TGCTGCTCAATTTTTGGAGA+TGG - chr2_3:3676897-3676916 Msa0272150:intron 40.0%
! ACCAAGTTTGAAGCCTCATA+TGG - chr2_3:3676942-3676961 Msa0272150:intron 40.0%
TCCATATGAGGCTTCAAACT+TGG + chr2_3:3676946-3676965 None:intergenic 40.0%
!! AAGGGATTCGTTTTTGGACT+TGG - chr2_3:3676977-3676996 Msa0272150:intron 40.0%
! TTGGACTTGGTTTGAACTCA+TGG - chr2_3:3676990-3677009 Msa0272150:intron 40.0%
TGCTTGTGTCACAAGAAAAC+TGG + chr2_3:3677161-3677180 None:intergenic 40.0%
!! ATAACTTCTCTGAGGCTACA+TGG - chr2_3:3677199-3677218 Msa0272150:intron 40.0%
! AAGTCTTATAGGTCCTCTGT+TGG - chr2_3:3677506-3677525 Msa0272150:CDS 40.0%
! ATTGTTGCTTGATCCAACAG+AGG + chr2_3:3677522-3677541 None:intergenic 40.0%
CTACTTCTTCCATCTCCAAA+TGG - chr2_3:3677549-3677568 Msa0272150:CDS 40.0%
TGATCTTTCCCATTTGGAGA+TGG + chr2_3:3677561-3677580 None:intergenic 40.0%
ATGCTTCAAATTCAGAAGGC+TGG + chr2_3:3677728-3677747 None:intergenic 40.0%
AGCCATGGACATGTATCTAA+AGG - chr2_3:3677800-3677819 Msa0272150:CDS 40.0%
! GTGATCTAGGCCATAGTTTT+AGG + chr2_3:3677971-3677990 None:intergenic 40.0%
TCTACTTCTAGCCTGATAAG+CGG - chr2_3:3678081-3678100 Msa0272150:CDS 40.0%
TATCTTGAAACCATACCACG+GGG + chr2_3:3678130-3678149 None:intergenic 40.0%
TTTCTTGTGACATCTTCTCG+TGG + chr2_3:3678482-3678501 None:intergenic 40.0%
!!! GCTCTTGGTTTTGTTTCTGA+AGG + chr2_3:3678537-3678556 None:intergenic 40.0%
! AAGAGGTATGGAGAATTGGA+AGG - chr2_3:3678684-3678703 Msa0272150:intron 40.0%
GTATGGAGAATTGGAAGGAA+TGG - chr2_3:3678689-3678708 Msa0272150:intron 40.0%
GAATTGGAAGGAATGGAATG+TGG - chr2_3:3678696-3678715 Msa0272150:intron 40.0%
CTTCTTTACACAAGCCAGAT+GGG + chr2_3:3678724-3678743 None:intergenic 40.0%
ACTTCTTTACACAAGCCAGA+TGG + chr2_3:3678725-3678744 None:intergenic 40.0%
! TGGCTTGTGTAAAGAAGTCA+GGG - chr2_3:3678727-3678746 Msa0272150:intron 40.0%
!! TGGAGTTTGCTGTGAACTTG+AGG - chr2_3:3676413-3676432 Msa0272150:three_prime_UTR 45.0%
TACTGCAAGCATGTCACAAG+TGG - chr2_3:3676590-3676609 Msa0272150:CDS 45.0%
TTGCTACAATAGCAGCAGCA+TGG - chr2_3:3676840-3676859 Msa0272150:intron 45.0%
TTGAGCAGCAGAACATAGCA+TGG + chr2_3:3676887-3676906 None:intergenic 45.0%
GTCACAAGAAAACTGGAAGC+TGG + chr2_3:3677154-3677173 None:intergenic 45.0%
AATTCAGAAGGCTGGAGATG+AGG + chr2_3:3677720-3677739 None:intergenic 45.0%
CGCAGACACACCTAAAACTA+TGG - chr2_3:3677958-3677977 Msa0272150:CDS 45.0%
CTACTTCTAGCCTGATAAGC+GGG - chr2_3:3678082-3678101 Msa0272150:CDS 45.0%
ATCTTGAAACCATACCACGG+GGG + chr2_3:3678129-3678148 None:intergenic 45.0%
AGTCAGAGATGTAGGCACAT+TGG - chr2_3:3678270-3678289 Msa0272150:CDS 45.0%
TCATAGGTTCATGCAGGCAT+AGG - chr2_3:3678420-3678439 Msa0272150:intron 45.0%
TCATGCAGGCATAGGTGAAA+AGG - chr2_3:3678428-3678447 Msa0272150:intron 45.0%
TGTCTAGTGACATGAGCTCT+TGG + chr2_3:3678552-3678571 None:intergenic 45.0%
! CTGGCTTGTGTAAAGAAGTC+AGG - chr2_3:3678726-3678745 Msa0272150:intron 45.0%
GGCTTGTGTAAAGAAGTCAG+GGG - chr2_3:3678728-3678747 Msa0272150:intron 45.0%
!!! ATGATATTTTTTATTTTTTT+TGG - chr2_3:3676762-3676781 Msa0272150:CDS 5.0%
!! ACTTCTCTGAGGCTACATGG+TGG - chr2_3:3677202-3677221 Msa0272150:intron 50.0%
GATCAGGAGCAACTTCCACA+AGG + chr2_3:3677698-3677717 None:intergenic 50.0%
ATTGGAAATCCCCCGTGGTA+TGG - chr2_3:3678117-3678136 Msa0272150:CDS 50.0%
AATGGAATGTGGGACCCATC+TGG - chr2_3:3678707-3678726 Msa0272150:intron 50.0%
GAAGGCTGGAGATGAGGATC+AGG + chr2_3:3677714-3677733 None:intergenic 55.0%
AGTTCTCCCAGATGCTGCGA+GGG - chr2_3:3677755-3677774 Msa0272150:CDS 55.0%
CAGTTCTCCCAGATGCTGCG+AGG - chr2_3:3677754-3677773 Msa0272150:CDS 60.0%
GCGATTCCCTCGCAGCATCT+GGG + chr2_3:3677764-3677783 None:intergenic 60.0%
TGCGATTCCCTCGCAGCATC+TGG + chr2_3:3677765-3677784 None:intergenic 60.0%
GCGTGACAAGCCCGCTTATC+AGG + chr2_3:3678095-3678114 None:intergenic 60.0%
! AGCGGGCTTGTCACGCGAAT+TGG - chr2_3:3678099-3678118 Msa0272150:CDS 60.0%
CGCGAATTGGAAATCCCCCG+TGG - chr2_3:3678112-3678131 Msa0272150:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 3676391 3678850 3676391 ID=Msa0272150;Name=Msa0272150
chr2_3 mRNA 3676391 3678850 3676391 ID=Msa0272150-mRNA-1;Parent=Msa0272150;Name=Msa0272150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0|0.33|3|50|445
chr2_3 exon 3676391 3676815 3676391 ID=Msa0272150-mRNA-1:exon:1818;Parent=Msa0272150-mRNA-1
chr2_3 exon 3677420 3678404 3677420 ID=Msa0272150-mRNA-1:exon:1817;Parent=Msa0272150-mRNA-1
chr2_3 exon 3678768 3678850 3678768 ID=Msa0272150-mRNA-1:exon:1816;Parent=Msa0272150-mRNA-1
chr2_3 five_prime_UTR 3678768 3678850 3678768 ID=Msa0272150-mRNA-1:five_prime_utr;Parent=Msa0272150-mRNA-1
chr2_3 five_prime_UTR 3678383 3678404 3678383 ID=Msa0272150-mRNA-1:five_prime_utr;Parent=Msa0272150-mRNA-1
chr2_3 CDS 3677420 3678382 3677420 ID=Msa0272150-mRNA-1:cds;Parent=Msa0272150-mRNA-1
chr2_3 CDS 3676441 3676815 3676441 ID=Msa0272150-mRNA-1:cds;Parent=Msa0272150-mRNA-1
chr2_3 three_prime_UTR 3676391 3676440 3676391 ID=Msa0272150-mRNA-1:three_prime_utr;Parent=Msa0272150-mRNA-1
Gene Sequence

>Msa0272150

ATGGAGTTAACTTCATCCAATGTGTCCATGCTATGTTCTGCTGCTCAATTTTTGGAGATGGAAGAGTGTGATAGTCTTGAAGCACCAAGTTTGAAGCCTCATATGGAAAATTTTCTTGAAGGGATTCGTTTTTGGACTTGGTTTGAACTCATGGAAGCATTGAAACAATGCCAAGAATCATTTCCTTCCAAAGGTTACTTAGAAATTCTTGACAGAATCATGGATCAATTAATAGAAAGACTAGTTTCTCCATGTCTTGTTACAAGTCCATACACATGTTCTTCAAACAGATCCAGCTTCCAGTTTTCTTGTGACACAAGCAGTAACAATAGCTTGAGAAATAACTTCTCTGAGGCTACATGGTGGTTTGAACATCTTCTGTTTTTGAAGATTGATTTGTTAGACAATGTCATAAGGAAAATGATATCTCATGATTTTGATCATTCTATTGTATCAAAATTTCTATTCTATTATCTTAACTTGAGTTGTGTTGGGGCTGAACAAGATGTTAAGATTGAGACGATTAAGGTTCTAATCGATCTTCTCTCATTGCTTGATATTGGATCAATTTCTTGCAAGGATTTGTTCAATCTTAATCGAATTGCTATTGGTTTGAAAATAAGCAAATTTTGTAGAAACAATATAGAAAGTCTTATAGGTCCTCTGTTGGATCAAGCAACAATTGATTATCTACTTCTTCCATCTCCAAATGGGAAAGATCATGCATATGATGTTGATTTTGTCATAAGGCTCGTGAAGATTTTTTTGTTAGGAGGAGGTAGTTTTGAGTTAGATTTGAACCAAGTTAAGAGAGTTACTAAATTGATGGATTTGTTCCTTGTGGAAGTTGCTCCTGATCCTCATCTCCAGCCTTCTGAATTTGAAGCATTGATTACAGTTCTCCCAGATGCTGCGAGGGAATCGCATGATCAATTATACATAGCCATGGACATGTATCTAAAGGTTCATGCAGGCATAGGTGAAAAGGAAGTGATGAATATTTGTTGTACACTGAACCACGAGAAGATGTCACAAGAAAGTTTAAGACATCTTACAAGAAACTTGGTATTTCCTTCAGAAACAAAACCAAGAGCTCATGTCACTAGACAGAGTCGAATGAAAACACTACTTCAAGAAAATGATCATTTGAAAAACTTCTTTGACTCAATGTTTGGTAAAAGCTTCAAGAACATAGATGTGAAAGAGGATGTTGAAGAGATAAAGAGGTATGGAGAATTGGAAGGAATGGAATGTGGGACCCATCTGGCTTGTGTAAAGAAGTCAGGGGTTCATACTTTGAGCAATAATACTATATACTTGCCAAAATTTTGTTCATGA

Protein sequence

>Msa0272150

MELTSSNVSMLCSAAQFLEMEECDSLEAPSLKPHMENFLEGIRFWTWFELMEALKQCQESFPSKGYLEILDRIMDQLIERLVSPCLVTSPYTCSSNRSSFQFSCDTSSNNSLRNNFSEATWWFEHLLFLKIDLLDNVIRKMISHDFDHSIVSKFLFYYLNLSCVGAEQDVKIETIKVLIDLLSLLDIGSISCKDLFNLNRIAIGLKISKFCRNNIESLIGPLLDQATIDYLLLPSPNGKDHAYDVDFVIRLVKIFLLGGGSFELDLNQVKRVTKLMDLFLVEVAPDPHLQPSEFEALITVLPDAARESHDQLYIAMDMYLKVHAGIGEKEVMNICCTLNHEKMSQESLRHLTRNLVFPSETKPRAHVTRQSRMKTLLQENDHLKNFFDSMFGKSFKNIDVKEDVEEIKRYGELEGMECGTHLACVKKSGVHTLSNNTIYLPKFCS*