AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191320 MtrunA17_Chr2g0281181 99.174 484 4 0 1 484 1 484 0.0 993
Msa0191320 MtrunA17_Chr6g0448931 35.238 210 126 6 106 309 268 473 3.58e-22 100
Msa0191320 MtrunA17_Chr3g0079021 26.241 282 168 9 197 449 325 595 3.75e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191320 AT4G21540.1 64.092 479 161 1 5 483 17 484 0.0 644
Msa0191320 AT4G21534.1 60.504 476 173 4 10 483 17 479 0.0 602
Msa0191320 AT4G21534.2 60.504 476 173 4 10 483 17 479 0.0 602
Msa0191320 AT4G21540.3 61.702 376 133 1 5 380 17 381 1.16e-169 483
Msa0191320 AT4G21540.2 64.561 285 90 1 199 483 1 274 4.91e-136 394
Msa0191320 AT5G23450.2 33.495 206 129 5 108 309 249 450 4.83e-25 109
Msa0191320 AT5G23450.1 33.495 206 129 5 108 309 249 450 4.83e-25 109
Msa0191320 AT5G23450.5 33.495 206 129 5 108 309 249 450 4.83e-25 109
Msa0191320 AT5G23450.4 33.495 206 129 5 108 309 249 450 5.92e-25 108
Msa0191320 AT5G23450.3 31.222 221 129 6 108 309 249 465 1.12e-21 99.0
Msa0191320 AT5G51290.1 26.182 275 170 9 197 449 322 585 1.30e-13 73.6

Find 156 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGGTGGGGTCCACTTTC+CGG 0.221113 2_1:+6948329 Msa0191320:five_prime_UTR
CATTTACTGAACCGGGTTTC+CGG 0.236823 2_1:+6948302 Msa0191320:five_prime_UTR
AGATTCAGATGGTGAGGTTT+TGG 0.263213 2_1:+6952426 Msa0191320:CDS
ATACTATAGATTATAGAATA+TGG 0.264627 2_1:-6948211 None:intergenic
AAATTTAACCGCCAACAATT+TGG 0.269751 2_1:-6952695 None:intergenic
GCAGTTCTCCGACGGTTATC+TGG 0.285599 2_1:+6952112 Msa0191320:intron
TTATCATTACACTTTATCTT+TGG 0.298023 2_1:-6952781 None:intergenic
TATTAGTGGAGATGGAATTT+TGG 0.307587 2_1:+6949099 Msa0191320:CDS
CCACATCAAGCTGTCGCTTA+TGG 0.316805 2_1:-6950266 None:intergenic
ATGAATTGGAGAGTTATAAA+TGG 0.319462 2_1:+6951552 Msa0191320:CDS
AATGATGTCAGAGCTGAATA+AGG 0.325937 2_1:+6952178 Msa0191320:CDS
CCGGATTTCATTTACTGAAC+CGG 0.341892 2_1:+6948294 Msa0191320:five_prime_UTR
CACCTGGGTTTGAGTCTTAC+GGG 0.346554 2_1:+6951409 Msa0191320:CDS
CCAGGCAAATCTACTATTAG+AGG 0.349615 2_1:+6951447 Msa0191320:CDS
GATGGAATTGTTTGTATTAG+TGG 0.356981 2_1:+6949085 Msa0191320:CDS
CAATAAATTCATGAAGCTTC+AGG 0.363216 2_1:-6948632 None:intergenic
ATGGACCCTTTATTAGTGTC+TGG 0.370216 2_1:+6951571 Msa0191320:CDS
TTGCAGATAACAGTGGATAA+AGG 0.371104 2_1:+6952505 Msa0191320:CDS
TGTTATCTGCAATTTATCAT+AGG 0.373214 2_1:-6952494 None:intergenic
GTTACTCGGTCCGAAAATAA+AGG 0.379470 2_1:-6948363 None:intergenic
TAAACTTGGAAAATATGAAT+TGG 0.383486 2_1:+6951538 Msa0191320:CDS
GTGAACCCAGACACTAATAA+AGG 0.387070 2_1:-6951577 None:intergenic
CTGGGTTCACAATGTACCTT+GGG 0.390540 2_1:+6951590 Msa0191320:CDS
CCTCGTCGGAGGAAAATCTT+AGG 0.394221 2_1:+6948601 Msa0191320:CDS
TTGCAAACACTTTGTTATCA+AGG 0.400837 2_1:+6951507 Msa0191320:CDS
GCACCTGGGTTTGAGTCTTA+CGG 0.401683 2_1:+6951408 Msa0191320:CDS
ACCGGGTTTCCGGCTGAGAT+TGG 0.404929 2_1:+6948312 Msa0191320:five_prime_UTR
CGGAGGAAAATCTTAGGCTT+TGG 0.405855 2_1:+6948607 Msa0191320:CDS
CAAGGAACGAGCAACCTCTT+TGG 0.408410 2_1:-6949047 None:intergenic
GGTTTCCGGCTGAGATTGGT+GGG 0.408630 2_1:+6948316 Msa0191320:five_prime_UTR
GTGTGAGCAGAAGGCTTTGA+TGG 0.409544 2_1:+6952471 Msa0191320:CDS
AGGTCCTTGGTGCGTGTACC+AGG 0.410998 2_1:-6952385 None:intergenic
AGCCTTCTGCTCACACTTGT+AGG 0.411998 2_1:-6952464 None:intergenic
GCCGTTCTTGCCATCATTCG+AGG 0.424674 2_1:+6950136 Msa0191320:CDS
TGGGGTCCACTTTCCGGAGA+TGG 0.427437 2_1:+6948335 Msa0191320:exon
ACTTTGTAAGGTACTGGAAA+TGG 0.432146 2_1:+6950061 Msa0191320:intron
GCACATTTCTTCCCACCAAA+TGG 0.437130 2_1:-6948851 None:intergenic
GGGTTTCCGGCTGAGATTGG+TGG 0.438428 2_1:+6948315 Msa0191320:five_prime_UTR
CCTTTGTAACACCAAATTGT+TGG 0.444550 2_1:+6952684 Msa0191320:three_prime_UTR
CCTCTAATAGTAGATTTGCC+TGG 0.445558 2_1:-6951447 None:intergenic
GCTTCTTCAAAGAGAGGATT+GGG 0.446128 2_1:+6949566 Msa0191320:CDS
TGCTGCACCACCGGTGAAGC+TGG 0.447019 2_1:+6948546 Msa0191320:CDS
CCGTGCCGTTGACGGTTACT+CGG 0.447055 2_1:-6948377 None:intergenic
CAATATATTTGATGCTGTAC+AGG 0.447490 2_1:-6952649 None:intergenic
TCAGTATATTGATGTTGGCA+TGG 0.447673 2_1:+6950319 Msa0191320:CDS
CGGATTTCATTTACTGAACC+GGG 0.449349 2_1:+6948295 Msa0191320:five_prime_UTR
TCTGCCGACTCTTCAATTTG+AGG 0.451311 2_1:+6951355 Msa0191320:CDS
TATCTCCGAGACGTGAAAAC+CGG 0.452293 2_1:+6948275 Msa0191320:five_prime_UTR
CAGTATATTGATGTTGGCAT+GGG 0.452709 2_1:+6950320 Msa0191320:CDS
CGGCGTTACCGTGCCGTTGA+CGG 0.456879 2_1:-6948385 None:intergenic
ACAAAACTGACCTTTGCATC+TGG 0.460288 2_1:-6951636 None:intergenic
GGCTTCTTCAAAGAGAGGAT+TGG 0.462592 2_1:+6949565 Msa0191320:CDS
TGGACCCTTTATTAGTGTCT+GGG 0.462795 2_1:+6951572 Msa0191320:CDS
CAAAGAGGTTGCTCGTTCCT+TGG 0.463356 2_1:+6949048 Msa0191320:CDS
TTAACATGTTCCCCTTCACT+TGG 0.470645 2_1:-6951483 None:intergenic
CCGGTTCAGTAAATGAAATC+CGG 0.473779 2_1:-6948294 None:intergenic
ATTGTTTGTATTAGTGGAGA+TGG 0.474601 2_1:+6949091 Msa0191320:CDS
CCCCTTGGAATAGTTCCTGC+AGG 0.474665 2_1:+6949606 Msa0191320:CDS
TTACCCCTATGTAATACTCT+TGG 0.481543 2_1:+6952542 Msa0191320:exon
CTCTAATAGTAGATTTGCCT+GGG 0.487949 2_1:-6951446 None:intergenic
AATAAAGGACGATCCATCTC+CGG 0.494389 2_1:-6948348 None:intergenic
TGAACCCAGACACTAATAAA+GGG 0.495010 2_1:-6951576 None:intergenic
TCAAGGACCTGAAATAAACT+TGG 0.497607 2_1:+6951524 Msa0191320:CDS
TTCTCACCGACGGTAGGCTA+TGG 0.502494 2_1:+6948415 Msa0191320:CDS
ATTAACCAAGAGTATTACAT+AGG 0.504287 2_1:-6952547 None:intergenic
TTGACAACAAATGTAACTTC+GGG 0.505763 2_1:-6952157 None:intergenic
ATTGACAACAAATGTAACTT+CGG 0.507378 2_1:-6952158 None:intergenic
ACCAATCTCAGCCGGAAACC+CGG 0.507435 2_1:-6948313 None:intergenic
AGATTTGCCTGGGTAACTGC+TGG 0.509934 2_1:-6951436 None:intergenic
CATGAATTTATTGATTCTCT+CGG 0.510453 2_1:+6948642 Msa0191320:CDS
GTCTGAAAAGTATCGGTGGA+TGG 0.510582 2_1:+6950473 Msa0191320:CDS
TCCGTATGTCACGTACCTAA+AGG 0.512712 2_1:+6952217 Msa0191320:CDS
ACCTCGAATGATGGCAAGAA+CGG 0.516893 2_1:-6950137 None:intergenic
TCTGGGTTCACAATGTACCT+TGG 0.516933 2_1:+6951589 Msa0191320:CDS
CAAATTCAACTCACTATACA+AGG 0.517431 2_1:+6948920 Msa0191320:CDS
AATGATGGCAAGAACGGCAT+TGG 0.517676 2_1:-6950131 None:intergenic
AAATCTCTGCTTGATTCAGT+TGG 0.518177 2_1:+6950091 Msa0191320:CDS
AACGAGTCTACCAGCTTCAC+CGG 0.520838 2_1:-6948556 None:intergenic
TTAACCAAGAGTATTACATA+GGG 0.530522 2_1:-6952546 None:intergenic
TGGACTGAAACCTCGAATGA+TGG 0.530669 2_1:-6950146 None:intergenic
GACGATCCATCTCCGGAAAG+TGG 0.536077 2_1:-6948341 None:intergenic
TTGTAACACCAAATTGTTGG+CGG 0.541853 2_1:+6952687 Msa0191320:three_prime_UTR
ACGCACCAAGGACCTAGAAA+AGG 0.542258 2_1:+6952393 Msa0191320:CDS
ATGATGTCAGAGCTGAATAA+GGG 0.543037 2_1:+6952179 Msa0191320:CDS
CATCAAACTCAAGACTCTTG+TGG 0.543663 2_1:+6948509 Msa0191320:CDS
CGTGACGGTTGCTGCACCAC+CGG 0.543925 2_1:+6948537 Msa0191320:CDS
TAAGACTCAAACCCAGGTGC+AGG 0.544026 2_1:-6951405 None:intergenic
ACAGCAATAAAGACGCCCCT+TGG 0.545236 2_1:+6949591 Msa0191320:CDS
ACCTTTAGGTACGTGACATA+CGG 0.546444 2_1:-6952218 None:intergenic
AACAGTGGCGATCCAAGTGA+AGG 0.550761 2_1:+6951471 Msa0191320:CDS
TCTGAAAAGTATCGGTGGAT+GGG 0.552297 2_1:+6950474 Msa0191320:CDS
CTCAATTGGCGTCAAAGTCA+AGG 0.552376 2_1:+6948093 None:intergenic
AACCTACAAGTGTGAGCAGA+AGG 0.552703 2_1:+6952462 Msa0191320:CDS
AAAGCTTTCAGCTTGGAACC+TGG 0.553371 2_1:+6952367 Msa0191320:CDS
TCCCCGTAAGACTCAAACCC+AGG 0.556710 2_1:-6951411 None:intergenic
TGGTAAATGCAGTTCTCCGA+CGG 0.556721 2_1:+6952104 Msa0191320:intron
AAAGGTGAAAGCTTTCAGCT+TGG 0.560686 2_1:+6952360 Msa0191320:intron
CAGGCAAATCTACTATTAGA+GGG 0.572549 2_1:+6951448 Msa0191320:CDS
AACCTGCAGGAACTATTCCA+AGG 0.573219 2_1:-6949608 None:intergenic
CATATATTATTGCAATCTCG+TGG 0.573555 2_1:-6952820 None:intergenic
TGGACCCCACCAATCTCAGC+CGG 0.575018 2_1:-6948321 None:intergenic
ACCTGCAGGAACTATTCCAA+GGG 0.581978 2_1:-6949607 None:intergenic
TTCAATTTGAGGCTATACAA+TGG 0.583619 2_1:+6951366 Msa0191320:CDS
ACATAGAGTCTGAAAAGTAT+CGG 0.585230 2_1:+6950466 Msa0191320:CDS
ATCGTGCTTTGAAATATCCA+AGG 0.586577 2_1:-6949065 None:intergenic
ACATCAGCTACATGCCAAAG+AGG 0.586600 2_1:+6949033 Msa0191320:CDS
CCAAGGACCTAGAAAAGGAA+GGG 0.587821 2_1:+6952398 Msa0191320:CDS
TCGGACCGAGTAACCGTCAA+CGG 0.591061 2_1:+6948372 Msa0191320:CDS
AAACGGGCTTCTTCAAAGAG+AGG 0.596062 2_1:+6949560 Msa0191320:CDS
GTGTACAATATTGCGTGGTG+TGG 0.598718 2_1:-6952588 None:intergenic
ACCAAGGACCTAGAAAAGGA+AGG 0.599301 2_1:+6952397 Msa0191320:CDS
GATCATAGATTCAGATGGTG+AGG 0.602096 2_1:+6952420 Msa0191320:CDS
TCACCGACGGTAGGCTATGG+TGG 0.602299 2_1:+6948418 Msa0191320:CDS
ACAGTGGCGATCCAAGTGAA+GGG 0.602626 2_1:+6951472 Msa0191320:CDS
TCTGGTTTCCCCTTGTGTGA+TGG 0.603088 2_1:-6950292 None:intergenic
CCAACAATTTGGTGTTACAA+AGG 0.603222 2_1:-6952684 None:intergenic
CGACGGTAGGCTATGGTGGT+CGG 0.603972 2_1:+6948422 Msa0191320:CDS
ATATTTGATGCTGTACAGGA+AGG 0.606328 2_1:-6952645 None:intergenic
TAGCTCTTCTCACCGACGGT+AGG 0.609654 2_1:+6948409 Msa0191320:CDS
GGGGAGTCCAGCAGTTACCC+AGG 0.614345 2_1:+6951429 Msa0191320:CDS
GTAAGGTACTGGAAATGGCA+TGG 0.615002 2_1:+6950066 Msa0191320:intron
AATGGCAGCACCAGATGCAA+AGG 0.617345 2_1:+6951626 Msa0191320:CDS
GGTAGGCTATGGTGGTCGGA+AGG 0.617653 2_1:+6948426 Msa0191320:CDS
ACGGCATTGGCTATTGCGCA+AGG 0.619785 2_1:-6950118 None:intergenic
GTTTCCGGCTGAGATTGGTG+GGG 0.623778 2_1:+6948317 Msa0191320:five_prime_UTR
ATAGCCTCAAATTGAAGAGT+CGG 0.627949 2_1:-6951359 None:intergenic
TTGGATATTTCAAAGCACGA+TGG 0.629196 2_1:+6949067 Msa0191320:CDS
GAAGGGATCATAGATTCAGA+TGG 0.634115 2_1:+6952415 Msa0191320:CDS
GTTCTCGGATTCGTCTCTAG+TGG 0.634222 2_1:+6948480 Msa0191320:CDS
CCATAAGCGACAGCTTGATG+TGG 0.637287 2_1:+6950266 Msa0191320:CDS
AGTATATTGATGTTGGCATG+GGG 0.637619 2_1:+6950321 Msa0191320:CDS
ACTCTTGTGGAAGCTCGTGA+CGG 0.644300 2_1:+6948522 Msa0191320:CDS
CAGTGGCGATCCAAGTGAAG+GGG 0.644789 2_1:+6951473 Msa0191320:CDS
CCGAGTAACCGTCAACGGCA+CGG 0.645401 2_1:+6948377 Msa0191320:CDS
GAAAGAACTAAACATTAACA+TGG 0.649943 2_1:-6948162 None:intergenic
GATGTGGCTACCATCACACA+AGG 0.653053 2_1:+6950282 Msa0191320:CDS
ACCTGGGTTTGAGTCTTACG+GGG 0.653794 2_1:+6951410 Msa0191320:CDS
TAGAGTCTGAAAAGTATCGG+TGG 0.655131 2_1:+6950469 Msa0191320:CDS
ATTGTGTCTTCAGCACCCCA+AGG 0.656208 2_1:-6951606 None:intergenic
CCGTCGGTGAGAAGAGCTAA+CGG 0.657017 2_1:-6948405 None:intergenic
GATCAAGTCCAGATAACCGT+CGG 0.657829 2_1:-6952120 None:intergenic
CCGTTAGCTCTTCTCACCGA+CGG 0.661100 2_1:+6948405 Msa0191320:CDS
GGAACCTGGTACACGCACCA+AGG 0.661636 2_1:+6952381 Msa0191320:CDS
GGTGGTCGGAAGGAATTCAA+CGG 0.661973 2_1:+6948436 Msa0191320:CDS
TGATAAATTGCAGATAACAG+TGG 0.665901 2_1:+6952498 Msa0191320:CDS
TGTGGCTACCATCACACAAG+GGG 0.666829 2_1:+6950284 Msa0191320:CDS
ATGTCAGAGCTGAATAAGGG+AGG 0.679486 2_1:+6952182 Msa0191320:CDS
CGACCACCATAGCCTACCGT+CGG 0.689684 2_1:-6948421 None:intergenic
TCTACTATTAGAGGGAACAG+TGG 0.691343 2_1:+6951456 Msa0191320:CDS
TTGGGGTGCTGAAGACACAA+TGG 0.697160 2_1:+6951608 Msa0191320:CDS
ATGTGGCTACCATCACACAA+GGG 0.702286 2_1:+6950283 Msa0191320:CDS
GAGTCTACCAGCTTCACCGG+TGG 0.702423 2_1:-6948553 None:intergenic
TAACCAAGAGTATTACATAG+GGG 0.710056 2_1:-6952545 None:intergenic
CCTGCAGGAACTATTCCAAG+GGG 0.737821 2_1:-6949606 None:intergenic
TGTGTGTGTACAATATTGCG+TGG 0.750543 2_1:-6952593 None:intergenic
TGGGTTCACAATGTACCTTG+GGG 0.763075 2_1:+6951591 Msa0191320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGTATTTTTTAATTTC+TGG - chr2_1:6948122-6948141 None:intergenic 10.0%
!!! CTTAATTTGTTTAATTTTAA+TGG + chr2_1:6951831-6951850 Msa0191320:intron 10.0%
!! ATCATTATTCTATTATAATT+TGG + chr2_1:6952084-6952103 Msa0191320:intron 10.0%
!! ATACTATAGATTATAGAATA+TGG - chr2_1:6948214-6948233 None:intergenic 15.0%
!! TTAGATTAGAAAGAAAAAAA+AGG - chr2_1:6949513-6949532 None:intergenic 15.0%
!!! CAAATATGTTATTTTATTTC+AGG + chr2_1:6950426-6950445 Msa0191320:intron 15.0%
!! TCAAATTATACTTTATGAAT+TGG + chr2_1:6951864-6951883 Msa0191320:intron 15.0%
!! CAGAAATTTATTGTTTATTA+TGG - chr2_1:6951937-6951956 None:intergenic 15.0%
!! ATTAAAAATATTTACACCAT+TGG - chr2_1:6952031-6952050 None:intergenic 15.0%
!! TTCACAACACAATATATTAA+TGG - chr2_1:6948773-6948792 None:intergenic 20.0%
!!! ACTATGAATTTTGATGATTT+AGG + chr2_1:6948797-6948816 Msa0191320:intron 20.0%
!!! CTATTTTACTATTAACTCTT+CGG - chr2_1:6949789-6949808 None:intergenic 20.0%
!!! GTAAAATAGGAATTTTATTC+AGG + chr2_1:6949800-6949819 Msa0191320:intron 20.0%
!!! ATTTTTCAGTATATTGATGT+TGG + chr2_1:6950314-6950333 Msa0191320:CDS 20.0%
!! AAGATGTGAACTTTATAAAA+TGG - chr2_1:6950531-6950550 None:intergenic 20.0%
!!! ACGTTTTTTTTTTTTTGACA+AGG + chr2_1:6950867-6950886 Msa0191320:intron 20.0%
!!! TTGTATCATAAATGAACTTT+TGG + chr2_1:6951174-6951193 Msa0191320:intron 20.0%
!!! ATATTTTCCAAGTTTATTTC+AGG - chr2_1:6951534-6951553 None:intergenic 20.0%
!! TAAACTTGGAAAATATGAAT+TGG + chr2_1:6951538-6951557 Msa0191320:CDS 20.0%
!!! TCTTTAGTTTGTGTTTTATT+TGG + chr2_1:6951705-6951724 Msa0191320:intron 20.0%
!!! AAAGTATTACACAATATATC+AGG - chr2_1:6952251-6952270 None:intergenic 20.0%
!! TTATCATTACACTTTATCTT+TGG - chr2_1:6952784-6952803 None:intergenic 20.0%
! GAAAGAACTAAACATTAACA+TGG - chr2_1:6948165-6948184 None:intergenic 25.0%
!!! CATGAATTTATTGATTCTCT+CGG + chr2_1:6948642-6948661 Msa0191320:CDS 25.0%
! ACAAAAACAAGCAATTTCTT+TGG - chr2_1:6948827-6948846 None:intergenic 25.0%
! CTTTGCAATATAAACATGAA+AGG - chr2_1:6949179-6949198 None:intergenic 25.0%
!!! TAGTTTGTGTTTATCTTTTG+AGG + chr2_1:6949199-6949218 Msa0191320:intron 25.0%
! TTCTCATGTAAGAATCATAA+TGG + chr2_1:6949316-6949335 Msa0191320:intron 25.0%
!! GAATCATAATGGTTTTTGTT+TGG + chr2_1:6949327-6949346 Msa0191320:intron 25.0%
! AATAGAAATTGTAACATCCA+TGG + chr2_1:6949390-6949409 Msa0191320:intron 25.0%
! ATAGAAATTGTAACATCCAT+GGG + chr2_1:6949391-6949410 Msa0191320:intron 25.0%
!!! ACATTTTAGTAGGTTGTAAA+CGG + chr2_1:6949543-6949562 Msa0191320:intron 25.0%
!! TTTTATGTTTTCTTGAGTAG+AGG + chr2_1:6949645-6949664 Msa0191320:intron 25.0%
!! TGTAAACTTTTTACTGAGAA+TGG + chr2_1:6949692-6949711 Msa0191320:intron 25.0%
!! GTAAACTTTTTACTGAGAAT+GGG + chr2_1:6949693-6949712 Msa0191320:intron 25.0%
! CGAAGAGTTAATAGTAAAAT+AGG + chr2_1:6949787-6949806 Msa0191320:intron 25.0%
! ATTCTAACAAAAATGATCTG+CGG - chr2_1:6949976-6949995 None:intergenic 25.0%
! ACATGTTTGAATGACATAAA+TGG - chr2_1:6950169-6950188 None:intergenic 25.0%
! CATGTATATGAAATATTGAC+AGG + chr2_1:6950243-6950262 Msa0191320:intron 25.0%
! CATCAATATACTGAAAAATC+TGG - chr2_1:6950313-6950332 None:intergenic 25.0%
! TAATTACTCTTACCATAGAT+TGG + chr2_1:6950344-6950363 Msa0191320:intron 25.0%
! GATAAAACAAGATTCCATTT+AGG - chr2_1:6950585-6950604 None:intergenic 25.0%
! AACAACTAATCACTAACATT+TGG - chr2_1:6950625-6950644 None:intergenic 25.0%
! CTTAAAATCACAAACAAACT+TGG - chr2_1:6950771-6950790 None:intergenic 25.0%
!!! TGATTTTAAGTTGAATGCTT+TGG + chr2_1:6950781-6950800 Msa0191320:intron 25.0%
!! AAATGTACGTTTGATTTCTT+CGG + chr2_1:6950821-6950840 Msa0191320:intron 25.0%
! GATATGTATACAGAAAAGTA+AGG - chr2_1:6951021-6951040 None:intergenic 25.0%
!! TATCATAAATGAACTTTTGG+TGG + chr2_1:6951177-6951196 Msa0191320:intron 25.0%
! GTTATAAAAGAGATATGAGT+TGG + chr2_1:6951289-6951308 Msa0191320:intron 25.0%
! ATGAATTGGAGAGTTATAAA+TGG + chr2_1:6951552-6951571 Msa0191320:CDS 25.0%
!!! ACAAACTAAAGAGTGTTAAT+GGG - chr2_1:6951697-6951716 None:intergenic 25.0%
! TGGAATCAATTCATACAAAT+TGG - chr2_1:6951777-6951796 None:intergenic 25.0%
!! TTTTCGTAGATAAATACCAA+TGG + chr2_1:6952012-6952031 Msa0191320:intron 25.0%
! ATTGACAACAAATGTAACTT+CGG - chr2_1:6952161-6952180 None:intergenic 25.0%
! TGTATCTTGCAATAAATCAA+AGG + chr2_1:6952342-6952361 Msa0191320:intron 25.0%
! TGTTATCTGCAATTTATCAT+AGG - chr2_1:6952497-6952516 None:intergenic 25.0%
!!! TTAACCAAGAGTATTACATA+GGG - chr2_1:6952549-6952568 None:intergenic 25.0%
!!! ATTAACCAAGAGTATTACAT+AGG - chr2_1:6952550-6952569 None:intergenic 25.0%
!! CTCTTGGTTAATTATTTTCT+CGG + chr2_1:6952558-6952577 Msa0191320:three_prime_UTR 25.0%
!! TCTTGGTTAATTATTTTCTC+GGG + chr2_1:6952559-6952578 Msa0191320:three_prime_UTR 25.0%
CAATAAATTCATGAAGCTTC+AGG - chr2_1:6948635-6948654 None:intergenic 30.0%
!!! CTTGTTTTTGTGAATCCATT+TGG + chr2_1:6948836-6948855 Msa0191320:CDS 30.0%
! TTTTTGTGAATCCATTTGGT+GGG + chr2_1:6948840-6948859 Msa0191320:CDS 30.0%
ATTTGAGCATCATCAAAAAG+TGG - chr2_1:6948905-6948924 None:intergenic 30.0%
CAAATTCAACTCACTATACA+AGG + chr2_1:6948920-6948939 Msa0191320:CDS 30.0%
CACAAACTCAATCAACAAAA+AGG - chr2_1:6948998-6949017 None:intergenic 30.0%
GATGGAATTGTTTGTATTAG+TGG + chr2_1:6949085-6949104 Msa0191320:CDS 30.0%
ATTGTTTGTATTAGTGGAGA+TGG + chr2_1:6949091-6949110 Msa0191320:CDS 30.0%
! TATTAGTGGAGATGGAATTT+TGG + chr2_1:6949099-6949118 Msa0191320:CDS 30.0%
!! ATGGTTTTTGTTTGGAAATG+AGG + chr2_1:6949335-6949354 Msa0191320:intron 30.0%
!! TGGTTTTTGTTTGGAAATGA+GGG + chr2_1:6949336-6949355 Msa0191320:intron 30.0%
ATGGGAAGTAAAATTGCAAT+GGG + chr2_1:6949409-6949428 Msa0191320:intron 30.0%
!! CATTTTAGTAGGTTGTAAAC+GGG + chr2_1:6949544-6949563 Msa0191320:intron 30.0%
!! CTGTGTATTGATTGTTTATC+AGG + chr2_1:6949731-6949750 Msa0191320:intron 30.0%
AGCAATCCATTAAGAGATTT+CGG - chr2_1:6949884-6949903 None:intergenic 30.0%
ATTTGCTTGATTTACTTGCA+AGG + chr2_1:6949932-6949951 Msa0191320:intron 30.0%
ATTCAAACATGTCATATCCT+AGG + chr2_1:6950177-6950196 Msa0191320:intron 30.0%
! TTTACAGTAATGAAGTACCT+AGG - chr2_1:6950197-6950216 None:intergenic 30.0%
CAAAATGTGATGCTATTCAT+TGG - chr2_1:6950376-6950395 None:intergenic 30.0%
! ATAGCATCACATTTTGTTGA+TGG + chr2_1:6950380-6950399 Msa0191320:intron 30.0%
! ACATAGAGTCTGAAAAGTAT+CGG + chr2_1:6950466-6950485 Msa0191320:CDS 30.0%
TTAGTTGTTAGAATTGTTCG+CGG + chr2_1:6950636-6950655 Msa0191320:intron 30.0%
TTCGAAGATAATTGCAACAA+AGG - chr2_1:6950722-6950741 None:intergenic 30.0%
! TTGAATGCTTTGGATTACTT+AGG + chr2_1:6950791-6950810 Msa0191320:intron 30.0%
! TGAATGCTTTGGATTACTTA+GGG + chr2_1:6950792-6950811 Msa0191320:intron 30.0%
TGATTTCTTCGGATTACTTA+AGG + chr2_1:6950832-6950851 Msa0191320:intron 30.0%
! AATATATCATCGGACTAGAA+TGG - chr2_1:6950916-6950935 None:intergenic 30.0%
GAGGTAAAGGAATATATCAT+CGG - chr2_1:6950926-6950945 None:intergenic 30.0%
AATTAGAAAGGAAGAGGTAA+AGG - chr2_1:6950939-6950958 None:intergenic 30.0%
CATTGAAATTAGAAAGGAAG+AGG - chr2_1:6950945-6950964 None:intergenic 30.0%
GAAGTGCATTGAAATTAGAA+AGG - chr2_1:6950951-6950970 None:intergenic 30.0%
GAGAAAAGAGAAATACATCA+CGG + chr2_1:6951042-6951061 Msa0191320:intron 30.0%
! GAAGTATCTCTCAAAATCAA+AGG - chr2_1:6951082-6951101 None:intergenic 30.0%
! GAGATACTTCTTAGTTCTTA+CGG + chr2_1:6951092-6951111 Msa0191320:intron 30.0%
! GTTAAATCTCTCATTTTGTG+TGG + chr2_1:6951114-6951133 Msa0191320:intron 30.0%
! TTTGTGTGGTTCTACTTTAA+AGG + chr2_1:6951128-6951147 Msa0191320:intron 30.0%
! TTCAATTTGAGGCTATACAA+TGG + chr2_1:6951366-6951385 Msa0191320:CDS 30.0%
! TTGCAAACACTTTGTTATCA+AGG + chr2_1:6951507-6951526 Msa0191320:CDS 30.0%
!! CACAAACTAAAGAGTGTTAA+TGG - chr2_1:6951698-6951717 None:intergenic 30.0%
TTATTAGGTGTACAAAAACC+TGG - chr2_1:6951977-6951996 None:intergenic 30.0%
! GCGTTTAGCTGAATTTTATT+AGG - chr2_1:6951992-6952011 None:intergenic 30.0%
TTGACAACAAATGTAACTTC+GGG - chr2_1:6952160-6952179 None:intergenic 30.0%
TGATAAATTGCAGATAACAG+TGG + chr2_1:6952498-6952517 Msa0191320:CDS 30.0%
!! TAACCAAGAGTATTACATAG+GGG - chr2_1:6952548-6952567 None:intergenic 30.0%
CAATATATTTGATGCTGTAC+AGG - chr2_1:6952652-6952671 None:intergenic 30.0%
AAATTTAACCGCCAACAATT+TGG - chr2_1:6952698-6952717 None:intergenic 30.0%
! GGTTTTCACAATCACAATGA+TGG - chr2_1:6948193-6948212 None:intergenic 35.0%
!!! GATGGATCGTCCTTTATTTT+CGG + chr2_1:6948353-6948372 Msa0191320:exon 35.0%
! CTTCCATAAGAAAGAAGTGT+CGG - chr2_1:6948726-6948745 None:intergenic 35.0%
! GTTTTTGTGAATCCATTTGG+TGG + chr2_1:6948839-6948858 Msa0191320:CDS 35.0%
!! ATCGTGCTTTGAAATATCCA+AGG - chr2_1:6949068-6949087 None:intergenic 35.0%
TTGGATATTTCAAAGCACGA+TGG + chr2_1:6949067-6949086 Msa0191320:CDS 35.0%
TCCAAATAACCTAGCACTAT+TGG + chr2_1:6949228-6949247 Msa0191320:intron 35.0%
TCCAATAGTGCTAGGTTATT+TGG - chr2_1:6949232-6949251 None:intergenic 35.0%
! CATTGCAATTTTACTTCCCA+TGG - chr2_1:6949410-6949429 None:intergenic 35.0%
CATGGGAAGTAAAATTGCAA+TGG + chr2_1:6949408-6949427 Msa0191320:intron 35.0%
TGGGAAGTAAAATTGCAATG+GGG + chr2_1:6949410-6949429 Msa0191320:intron 35.0%
!! CAAGCATCACACATTTTAGT+AGG + chr2_1:6949533-6949552 Msa0191320:intron 35.0%
GAAACAAGAAATAAACCTGC+AGG - chr2_1:6949624-6949643 None:intergenic 35.0%
! AACTTTTTACTGAGAATGGG+TGG + chr2_1:6949696-6949715 Msa0191320:intron 35.0%
! ACTTTTTACTGAGAATGGGT+GGG + chr2_1:6949697-6949716 Msa0191320:intron 35.0%
TCTCAATTCTTGTATCAGCA+TGG - chr2_1:6949851-6949870 None:intergenic 35.0%
CAGTTACCGAAATCTCTTAA+TGG + chr2_1:6949875-6949894 Msa0191320:intron 35.0%
!! GAAATCTCTTAATGGATTGC+TGG + chr2_1:6949883-6949902 Msa0191320:intron 35.0%
! ATGGATTGCTGGTCTATTAA+CGG + chr2_1:6949894-6949913 Msa0191320:intron 35.0%
ATCTGTAGATAACGAGTGTA+TGG + chr2_1:6950001-6950020 Msa0191320:intron 35.0%
TCTGTAGATAACGAGTGTAT+GGG + chr2_1:6950002-6950021 Msa0191320:intron 35.0%
TATGGAAGAGCTTATTAGCT+TGG - chr2_1:6950042-6950061 None:intergenic 35.0%
AAGCTCTTCCATACTTTGTA+AGG + chr2_1:6950049-6950068 Msa0191320:intron 35.0%
TTCCATACTTTGTAAGGTAC+TGG + chr2_1:6950055-6950074 Msa0191320:intron 35.0%
TTCCAGTACCTTACAAAGTA+TGG - chr2_1:6950060-6950079 None:intergenic 35.0%
!! ACTTTGTAAGGTACTGGAAA+TGG + chr2_1:6950061-6950080 Msa0191320:intron 35.0%
AAATCTCTGCTTGATTCAGT+TGG + chr2_1:6950091-6950110 Msa0191320:CDS 35.0%
TCAGTATATTGATGTTGGCA+TGG + chr2_1:6950319-6950338 Msa0191320:CDS 35.0%
CAGTATATTGATGTTGGCAT+GGG + chr2_1:6950320-6950339 Msa0191320:CDS 35.0%
AGTATATTGATGTTGGCATG+GGG + chr2_1:6950321-6950340 Msa0191320:CDS 35.0%
TAGTTGTTAGAATTGTTCGC+GGG + chr2_1:6950637-6950656 Msa0191320:intron 35.0%
ACATAAGGATTGGAGAGATA+AGG - chr2_1:6950680-6950699 None:intergenic 35.0%
! ATAGAGTGGTTTGGAACATA+AGG - chr2_1:6950695-6950714 None:intergenic 35.0%
AAAAAATGTGTCACAAGCGA+AGG - chr2_1:6951242-6951261 None:intergenic 35.0%
ATAGCCTCAAATTGAAGAGT+CGG - chr2_1:6951362-6951381 None:intergenic 35.0%
CTCTAATAGTAGATTTGCCT+GGG - chr2_1:6951449-6951468 None:intergenic 35.0%
CAGGCAAATCTACTATTAGA+GGG + chr2_1:6951448-6951467 Msa0191320:CDS 35.0%
TCAAGGACCTGAAATAAACT+TGG + chr2_1:6951524-6951543 Msa0191320:CDS 35.0%
TGAACCCAGACACTAATAAA+GGG - chr2_1:6951579-6951598 None:intergenic 35.0%
TTCATCGCGATTTGTACATT+TGG - chr2_1:6951797-6951816 None:intergenic 35.0%
! TGTTTTTCTCTTCTCCCTAA+TGG + chr2_1:6952050-6952069 Msa0191320:intron 35.0%
! GTTTTTCTCTTCTCCCTAAT+GGG + chr2_1:6952051-6952070 Msa0191320:intron 35.0%
! TTTTTCTCTTCTCCCTAATG+GGG + chr2_1:6952052-6952071 Msa0191320:intron 35.0%
AATGATGTCAGAGCTGAATA+AGG + chr2_1:6952178-6952197 Msa0191320:CDS 35.0%
ATGATGTCAGAGCTGAATAA+GGG + chr2_1:6952179-6952198 Msa0191320:CDS 35.0%
TATCAGGAAATCACACCTTT+AGG - chr2_1:6952235-6952254 None:intergenic 35.0%
!! ATTGAGCTTTGAAAGAGTCT+TGG + chr2_1:6952283-6952302 Msa0191320:intron 35.0%
TTGCAGATAACAGTGGATAA+AGG + chr2_1:6952505-6952524 Msa0191320:CDS 35.0%
TTACCCCTATGTAATACTCT+TGG + chr2_1:6952542-6952561 Msa0191320:exon 35.0%
ATATTTGATGCTGTACAGGA+AGG - chr2_1:6952648-6952667 None:intergenic 35.0%
!! CCAACAATTTGGTGTTACAA+AGG - chr2_1:6952687-6952706 None:intergenic 35.0%
CCTTTGTAACACCAAATTGT+TGG + chr2_1:6952684-6952703 Msa0191320:three_prime_UTR 35.0%
TTGTAACACCAAATTGTTGG+CGG + chr2_1:6952687-6952706 Msa0191320:three_prime_UTR 35.0%
!!! TTTTCTTGAGTTGAGTGAGA+GGG + chr2_1:6952751-6952770 Msa0191320:three_prime_UTR 35.0%
CCGGTTCAGTAAATGAAATC+CGG - chr2_1:6948297-6948316 None:intergenic 40.0%
CCGGATTTCATTTACTGAAC+CGG + chr2_1:6948294-6948313 Msa0191320:five_prime_UTR 40.0%
CGGATTTCATTTACTGAACC+GGG + chr2_1:6948295-6948314 Msa0191320:five_prime_UTR 40.0%
AATAAAGGACGATCCATCTC+CGG - chr2_1:6948351-6948370 None:intergenic 40.0%
GTTACTCGGTCCGAAAATAA+AGG - chr2_1:6948366-6948385 None:intergenic 40.0%
TCCGTTGAAAAAGAGGTTCT+CGG + chr2_1:6948465-6948484 Msa0191320:CDS 40.0%
!!! TCCGAGAACCTCTTTTTCAA+CGG - chr2_1:6948469-6948488 None:intergenic 40.0%
CATCAAACTCAAGACTCTTG+TGG + chr2_1:6948509-6948528 Msa0191320:CDS 40.0%
!!! TGGAGATGGAATTTTGGTTG+AGG + chr2_1:6949105-6949124 Msa0191320:CDS 40.0%
AAGCATGATCCAATAGTGCT+AGG - chr2_1:6949240-6949259 None:intergenic 40.0%
GGGAAGTAAAATTGCAATGG+GGG + chr2_1:6949411-6949430 Msa0191320:intron 40.0%
GCTTCTTCAAAGAGAGGATT+GGG + chr2_1:6949566-6949585 Msa0191320:CDS 40.0%
! TGGTACTGGGATAAGGATTA+GGG - chr2_1:6949831-6949850 None:intergenic 40.0%
! ATGGTACTGGGATAAGGATT+AGG - chr2_1:6949832-6949851 None:intergenic 40.0%
TCTTGTATCAGCATGGTACT+GGG - chr2_1:6949844-6949863 None:intergenic 40.0%
TTCTTGTATCAGCATGGTAC+TGG - chr2_1:6949845-6949864 None:intergenic 40.0%
!! TAGAGTCTGAAAAGTATCGG+TGG + chr2_1:6950469-6950488 Msa0191320:CDS 40.0%
!! TCTGAAAAGTATCGGTGGAT+GGG + chr2_1:6950474-6950493 Msa0191320:CDS 40.0%
CTGAATATGAGCGTCCTAAA+TGG + chr2_1:6950568-6950587 Msa0191320:intron 40.0%
AGTTGTTAGAATTGTTCGCG+GGG + chr2_1:6950638-6950657 Msa0191320:intron 40.0%
! GTGGTTTGGAACATAAGGAT+TGG - chr2_1:6950690-6950709 None:intergenic 40.0%
AAAGGAGTGATAGAGTGGTT+TGG - chr2_1:6950704-6950723 None:intergenic 40.0%
ATCTTCGAACACTTCAGTTC+TGG + chr2_1:6950733-6950752 Msa0191320:intron 40.0%
TCTTCGAACACTTCAGTTCT+GGG + chr2_1:6950734-6950753 Msa0191320:intron 40.0%
ATTAAGCAGATAGAAGCTGC+AGG - chr2_1:6950984-6951003 None:intergenic 40.0%
GAGAAATACATCACGGCTTT+AGG + chr2_1:6951049-6951068 Msa0191320:intron 40.0%
CCTCTAATAGTAGATTTGCC+TGG - chr2_1:6951450-6951469 None:intergenic 40.0%
CCAGGCAAATCTACTATTAG+AGG + chr2_1:6951447-6951466 Msa0191320:CDS 40.0%
TCTACTATTAGAGGGAACAG+TGG + chr2_1:6951456-6951475 Msa0191320:CDS 40.0%
TTAACATGTTCCCCTTCACT+TGG - chr2_1:6951486-6951505 None:intergenic 40.0%
ATGGACCCTTTATTAGTGTC+TGG + chr2_1:6951571-6951590 Msa0191320:CDS 40.0%
TGGACCCTTTATTAGTGTCT+GGG + chr2_1:6951572-6951591 Msa0191320:CDS 40.0%
GTGAACCCAGACACTAATAA+AGG - chr2_1:6951580-6951599 None:intergenic 40.0%
ACAAAACTGACCTTTGCATC+TGG - chr2_1:6951639-6951658 None:intergenic 40.0%
ACAAATTGGTCCTCCTAATG+AGG - chr2_1:6951763-6951782 None:intergenic 40.0%
!! GTACTCTTTTAACTGCTACC+AGG + chr2_1:6951956-6951975 Msa0191320:intron 40.0%
!! GATCAGTTTTAGCCCCATTA+GGG - chr2_1:6952067-6952086 None:intergenic 40.0%
!! TGATCAGTTTTAGCCCCATT+AGG - chr2_1:6952068-6952087 None:intergenic 40.0%
ACCTTTAGGTACGTGACATA+CGG - chr2_1:6952221-6952240 None:intergenic 40.0%
! CTTTGAAAGAGTCTTGGCAT+TGG + chr2_1:6952289-6952308 Msa0191320:intron 40.0%
AAAGGTGAAAGCTTTCAGCT+TGG + chr2_1:6952360-6952379 Msa0191320:intron 40.0%
! CTATGATCCCTTCCTTTTCT+AGG - chr2_1:6952408-6952427 None:intergenic 40.0%
GAAGGGATCATAGATTCAGA+TGG + chr2_1:6952415-6952434 Msa0191320:CDS 40.0%
GATCATAGATTCAGATGGTG+AGG + chr2_1:6952420-6952439 Msa0191320:CDS 40.0%
! AGATTCAGATGGTGAGGTTT+TGG + chr2_1:6952426-6952445 Msa0191320:CDS 40.0%
TGTGTGTGTACAATATTGCG+TGG - chr2_1:6952596-6952615 None:intergenic 40.0%
!!! CTTTTCTTGAGTTGAGTGAG+AGG + chr2_1:6952750-6952769 Msa0191320:three_prime_UTR 40.0%
TATCTCCGAGACGTGAAAAC+CGG + chr2_1:6948275-6948294 Msa0191320:five_prime_UTR 45.0%
! GAAATCCGGTTTTCACGTCT+CGG - chr2_1:6948283-6948302 None:intergenic 45.0%
CATTTACTGAACCGGGTTTC+CGG + chr2_1:6948302-6948321 Msa0191320:five_prime_UTR 45.0%
GTGTCTCTCCGTTGAAAAAG+AGG + chr2_1:6948458-6948477 Msa0191320:CDS 45.0%
!!! CGTCGTTTTTAAACCCTCGT+CGG + chr2_1:6948587-6948606 Msa0191320:CDS 45.0%
! CTAAGATTTTCCTCCGACGA+GGG - chr2_1:6948603-6948622 None:intergenic 45.0%
CGGAGGAAAATCTTAGGCTT+TGG + chr2_1:6948607-6948626 Msa0191320:CDS 45.0%
! GCACCGACACTTCTTTCTTA+TGG + chr2_1:6948720-6948739 Msa0191320:intron 45.0%
GCACATTTCTTCCCACCAAA+TGG - chr2_1:6948854-6948873 None:intergenic 45.0%
ACATCAGCTACATGCCAAAG+AGG + chr2_1:6949033-6949052 Msa0191320:CDS 45.0%
TTAGTCCTTCTGAGCTTCAG+CGG - chr2_1:6949371-6949390 None:intergenic 45.0%
! AAACGGGCTTCTTCAAAGAG+AGG + chr2_1:6949560-6949579 Msa0191320:CDS 45.0%
GGCTTCTTCAAAGAGAGGAT+TGG + chr2_1:6949565-6949584 Msa0191320:CDS 45.0%
ACCTGCAGGAACTATTCCAA+GGG - chr2_1:6949610-6949629 None:intergenic 45.0%
AACCTGCAGGAACTATTCCA+AGG - chr2_1:6949611-6949630 None:intergenic 45.0%
! ATCAGCATGGTACTGGGATA+AGG - chr2_1:6949838-6949857 None:intergenic 45.0%
!! GTAAGGTACTGGAAATGGCA+TGG + chr2_1:6950066-6950085 Msa0191320:intron 45.0%
AATGATGGCAAGAACGGCAT+TGG - chr2_1:6950134-6950153 None:intergenic 45.0%
ACCTCGAATGATGGCAAGAA+CGG - chr2_1:6950140-6950159 None:intergenic 45.0%
TGGACTGAAACCTCGAATGA+TGG - chr2_1:6950149-6950168 None:intergenic 45.0%
ATGTGGCTACCATCACACAA+GGG + chr2_1:6950283-6950302 Msa0191320:CDS 45.0%
CATTGGCAGTCTCCAATCTA+TGG - chr2_1:6950359-6950378 None:intergenic 45.0%
!! GTCTGAAAAGTATCGGTGGA+TGG + chr2_1:6950473-6950492 Msa0191320:CDS 45.0%
GCAACAAAGGAGTGATAGAG+TGG - chr2_1:6950709-6950728 None:intergenic 45.0%
CAGCAGGAAAGCAGTGAATA+AGG - chr2_1:6951328-6951347 None:intergenic 45.0%
ATTCACTGCTTTCCTGCTGT+AGG + chr2_1:6951329-6951348 Msa0191320:intron 45.0%
!! TCTGCCGACTCTTCAATTTG+AGG + chr2_1:6951355-6951374 Msa0191320:CDS 45.0%
! TTTCTTTTGTGCCTGCACCT+GGG + chr2_1:6951394-6951413 Msa0191320:CDS 45.0%
TCTGGGTTCACAATGTACCT+TGG + chr2_1:6951589-6951608 Msa0191320:CDS 45.0%
CTGGGTTCACAATGTACCTT+GGG + chr2_1:6951590-6951609 Msa0191320:CDS 45.0%
TGGGTTCACAATGTACCTTG+GGG + chr2_1:6951591-6951610 Msa0191320:CDS 45.0%
TGGTAAATGCAGTTCTCCGA+CGG + chr2_1:6952104-6952123 Msa0191320:intron 45.0%
GATCAAGTCCAGATAACCGT+CGG - chr2_1:6952123-6952142 None:intergenic 45.0%
ATGTCAGAGCTGAATAAGGG+AGG + chr2_1:6952182-6952201 Msa0191320:CDS 45.0%
TCCGTATGTCACGTACCTAA+AGG + chr2_1:6952217-6952236 Msa0191320:CDS 45.0%
AAAGCTTTCAGCTTGGAACC+TGG + chr2_1:6952367-6952386 Msa0191320:CDS 45.0%
ACCAAGGACCTAGAAAAGGA+AGG + chr2_1:6952397-6952416 Msa0191320:CDS 45.0%
CCAAGGACCTAGAAAAGGAA+GGG + chr2_1:6952398-6952417 Msa0191320:CDS 45.0%
!! ATGGTGAGGTTTTGGCAAGA+GGG + chr2_1:6952434-6952453 Msa0191320:CDS 45.0%
AACCTACAAGTGTGAGCAGA+AGG + chr2_1:6952462-6952481 Msa0191320:CDS 45.0%
GTGTACAATATTGCGTGGTG+TGG - chr2_1:6952591-6952610 None:intergenic 45.0%
!!! TAAATTTTGAATTATTAATA+CGG + chr2_1:6952711-6952730 Msa0191320:three_prime_UTR 5.0%
GGTGGTCGGAAGGAATTCAA+CGG + chr2_1:6948436-6948455 Msa0191320:CDS 50.0%
GTTCTCGGATTCGTCTCTAG+TGG + chr2_1:6948480-6948499 Msa0191320:CDS 50.0%
ACTCTTGTGGAAGCTCGTGA+CGG + chr2_1:6948522-6948541 Msa0191320:CDS 50.0%
AACGAGTCTACCAGCTTCAC+CGG - chr2_1:6948559-6948578 None:intergenic 50.0%
! CGTTTTTAAACCCTCGTCGG+AGG + chr2_1:6948590-6948609 Msa0191320:CDS 50.0%
! CCTAAGATTTTCCTCCGACG+AGG - chr2_1:6948604-6948623 None:intergenic 50.0%
CCTCGTCGGAGGAAAATCTT+AGG + chr2_1:6948601-6948620 Msa0191320:CDS 50.0%
CAAGGAACGAGCAACCTCTT+TGG - chr2_1:6949050-6949069 None:intergenic 50.0%
CAAAGAGGTTGCTCGTTCCT+TGG + chr2_1:6949048-6949067 Msa0191320:CDS 50.0%
TGATACCGCTGAAGCTCAGA+AGG + chr2_1:6949363-6949382 Msa0191320:intron 50.0%
ACAGCAATAAAGACGCCCCT+TGG + chr2_1:6949591-6949610 Msa0191320:CDS 50.0%
CCTGCAGGAACTATTCCAAG+GGG - chr2_1:6949609-6949628 None:intergenic 50.0%
! CCACATCAAGCTGTCGCTTA+TGG - chr2_1:6950269-6950288 None:intergenic 50.0%
CCATAAGCGACAGCTTGATG+TGG + chr2_1:6950266-6950285 Msa0191320:CDS 50.0%
GATGTGGCTACCATCACACA+AGG + chr2_1:6950282-6950301 Msa0191320:CDS 50.0%
TGTGGCTACCATCACACAAG+GGG + chr2_1:6950284-6950303 Msa0191320:CDS 50.0%
! TCTGGTTTCCCCTTGTGTGA+TGG - chr2_1:6950295-6950314 None:intergenic 50.0%
! GTTTCTTTTGTGCCTGCACC+TGG + chr2_1:6951393-6951412 Msa0191320:CDS 50.0%
TAAGACTCAAACCCAGGTGC+AGG - chr2_1:6951408-6951427 None:intergenic 50.0%
GCACCTGGGTTTGAGTCTTA+CGG + chr2_1:6951408-6951427 Msa0191320:CDS 50.0%
CACCTGGGTTTGAGTCTTAC+GGG + chr2_1:6951409-6951428 Msa0191320:CDS 50.0%
ACCTGGGTTTGAGTCTTACG+GGG + chr2_1:6951410-6951429 Msa0191320:CDS 50.0%
AGATTTGCCTGGGTAACTGC+TGG - chr2_1:6951439-6951458 None:intergenic 50.0%
AACAGTGGCGATCCAAGTGA+AGG + chr2_1:6951471-6951490 Msa0191320:CDS 50.0%
ACAGTGGCGATCCAAGTGAA+GGG + chr2_1:6951472-6951491 Msa0191320:CDS 50.0%
ATTGTGTCTTCAGCACCCCA+AGG - chr2_1:6951609-6951628 None:intergenic 50.0%
!! TTGGGGTGCTGAAGACACAA+TGG + chr2_1:6951608-6951627 Msa0191320:CDS 50.0%
AATGGCAGCACCAGATGCAA+AGG + chr2_1:6951626-6951645 Msa0191320:CDS 50.0%
TCCCAATTGCTTCCGTGACT+AGG + chr2_1:6951733-6951752 Msa0191320:intron 50.0%
CCCTAGTCACGGAAGCAATT+GGG - chr2_1:6951737-6951756 None:intergenic 50.0%
CCCAATTGCTTCCGTGACTA+GGG + chr2_1:6951734-6951753 Msa0191320:intron 50.0%
ACCCTAGTCACGGAAGCAAT+TGG - chr2_1:6951738-6951757 None:intergenic 50.0%
AATTGCTTCCGTGACTAGGG+TGG + chr2_1:6951737-6951756 Msa0191320:intron 50.0%
TAATGAGGCCACCCTAGTCA+CGG - chr2_1:6951748-6951767 None:intergenic 50.0%
ACGCACCAAGGACCTAGAAA+AGG + chr2_1:6952393-6952412 Msa0191320:CDS 50.0%
! CCCTTCCTTTTCTAGGTCCT+TGG - chr2_1:6952401-6952420 None:intergenic 50.0%
!! GATGGTGAGGTTTTGGCAAG+AGG + chr2_1:6952433-6952452 Msa0191320:CDS 50.0%
AGCCTTCTGCTCACACTTGT+AGG - chr2_1:6952467-6952486 None:intergenic 50.0%
! GTGTGAGCAGAAGGCTTTGA+TGG + chr2_1:6952471-6952490 Msa0191320:CDS 50.0%
ACCAATCTCAGCCGGAAACC+CGG - chr2_1:6948316-6948335 None:intergenic 55.0%
GGTTTCCGGCTGAGATTGGT+GGG + chr2_1:6948316-6948335 Msa0191320:five_prime_UTR 55.0%
GTTTCCGGCTGAGATTGGTG+GGG + chr2_1:6948317-6948336 Msa0191320:five_prime_UTR 55.0%
GATTGGTGGGGTCCACTTTC+CGG + chr2_1:6948329-6948348 Msa0191320:five_prime_UTR 55.0%
GACGATCCATCTCCGGAAAG+TGG - chr2_1:6948344-6948363 None:intergenic 55.0%
TCGGACCGAGTAACCGTCAA+CGG + chr2_1:6948372-6948391 Msa0191320:CDS 55.0%
CCGTCGGTGAGAAGAGCTAA+CGG - chr2_1:6948408-6948427 None:intergenic 55.0%
! CCGTTAGCTCTTCTCACCGA+CGG + chr2_1:6948405-6948424 Msa0191320:CDS 55.0%
TAGCTCTTCTCACCGACGGT+AGG + chr2_1:6948409-6948428 Msa0191320:CDS 55.0%
TTCTCACCGACGGTAGGCTA+TGG + chr2_1:6948415-6948434 Msa0191320:CDS 55.0%
CCCCTTGGAATAGTTCCTGC+AGG + chr2_1:6949606-6949625 Msa0191320:CDS 55.0%
!! ACGGCATTGGCTATTGCGCA+AGG - chr2_1:6950121-6950140 None:intergenic 55.0%
GCCGTTCTTGCCATCATTCG+AGG + chr2_1:6950136-6950155 Msa0191320:CDS 55.0%
TCCCCGTAAGACTCAAACCC+AGG - chr2_1:6951414-6951433 None:intergenic 55.0%
CAGTGGCGATCCAAGTGAAG+GGG + chr2_1:6951473-6951492 Msa0191320:CDS 55.0%
GTGACTAGGGTGGCCTCATT+AGG + chr2_1:6951747-6951766 Msa0191320:intron 55.0%
ACTAGGGTGGCCTCATTAGG+AGG + chr2_1:6951750-6951769 Msa0191320:intron 55.0%
GCAGTTCTCCGACGGTTATC+TGG + chr2_1:6952112-6952131 Msa0191320:intron 55.0%
!! GAGGTTTTGGCAAGAGGGAG+AGG + chr2_1:6952439-6952458 Msa0191320:CDS 55.0%
ACCGGGTTTCCGGCTGAGAT+TGG + chr2_1:6948312-6948331 Msa0191320:five_prime_UTR 60.0%
GGGTTTCCGGCTGAGATTGG+TGG + chr2_1:6948315-6948334 Msa0191320:five_prime_UTR 60.0%
TGGACCCCACCAATCTCAGC+CGG - chr2_1:6948324-6948343 None:intergenic 60.0%
TGGGGTCCACTTTCCGGAGA+TGG + chr2_1:6948335-6948354 Msa0191320:exon 60.0%
! CCGTGCCGTTGACGGTTACT+CGG - chr2_1:6948380-6948399 None:intergenic 60.0%
CCGAGTAACCGTCAACGGCA+CGG + chr2_1:6948377-6948396 Msa0191320:CDS 60.0%
TCACCGACGGTAGGCTATGG+TGG + chr2_1:6948418-6948437 Msa0191320:CDS 60.0%
CGACCACCATAGCCTACCGT+CGG - chr2_1:6948424-6948443 None:intergenic 60.0%
CGACGGTAGGCTATGGTGGT+CGG + chr2_1:6948422-6948441 Msa0191320:CDS 60.0%
GGTAGGCTATGGTGGTCGGA+AGG + chr2_1:6948426-6948445 Msa0191320:CDS 60.0%
GAGTCTACCAGCTTCACCGG+TGG - chr2_1:6948556-6948575 None:intergenic 60.0%
GGAACCTGGTACACGCACCA+AGG + chr2_1:6952381-6952400 Msa0191320:CDS 60.0%
! AGGTCCTTGGTGCGTGTACC+AGG - chr2_1:6952388-6952407 None:intergenic 60.0%
! CGGCGTTACCGTGCCGTTGA+CGG - chr2_1:6948388-6948407 None:intergenic 65.0%
CGTGACGGTTGCTGCACCAC+CGG + chr2_1:6948537-6948556 Msa0191320:CDS 65.0%
TGCTGCACCACCGGTGAAGC+TGG + chr2_1:6948546-6948565 Msa0191320:CDS 65.0%
GTCGGCAGACAGCCTACAGC+AGG - chr2_1:6951344-6951363 None:intergenic 65.0%
GGGGAGTCCAGCAGTTACCC+AGG + chr2_1:6951429-6951448 Msa0191320:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6948105 6952834 6948105 ID=Msa0191320;Name=Msa0191320
chr2_1 mRNA 6948105 6952834 6948105 ID=Msa0191320-mRNA-1;Parent=Msa0191320;Name=Msa0191320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=249|1|1|1|1|1|10|279|484
chr2_1 exon 6948105 6948663 6948105 ID=Msa0191320-mRNA-1:exon:3165;Parent=Msa0191320-mRNA-1
chr2_1 exon 6948819 6948941 6948819 ID=Msa0191320-mRNA-1:exon:3166;Parent=Msa0191320-mRNA-1
chr2_1 exon 6949026 6949126 6949026 ID=Msa0191320-mRNA-1:exon:3167;Parent=Msa0191320-mRNA-1
chr2_1 exon 6949555 6949627 6949555 ID=Msa0191320-mRNA-1:exon:3168;Parent=Msa0191320-mRNA-1
chr2_1 exon 6950071 6950157 6950071 ID=Msa0191320-mRNA-1:exon:3169;Parent=Msa0191320-mRNA-1
chr2_1 exon 6950265 6950342 6950265 ID=Msa0191320-mRNA-1:exon:3170;Parent=Msa0191320-mRNA-1
chr2_1 exon 6950448 6950518 6950448 ID=Msa0191320-mRNA-1:exon:3171;Parent=Msa0191320-mRNA-1
chr2_1 exon 6951351 6951647 6951351 ID=Msa0191320-mRNA-1:exon:3172;Parent=Msa0191320-mRNA-1
chr2_1 exon 6952116 6952238 6952116 ID=Msa0191320-mRNA-1:exon:3173;Parent=Msa0191320-mRNA-1
chr2_1 exon 6952364 6952834 6952364 ID=Msa0191320-mRNA-1:exon:3174;Parent=Msa0191320-mRNA-1
chr2_1 five_prime_UTR 6948105 6948353 6948105 ID=Msa0191320-mRNA-1:five_prime_utr;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6948354 6948663 6948354 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6948819 6948941 6948819 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6949026 6949126 6949026 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6949555 6949627 6949555 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6950071 6950157 6950071 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6950265 6950342 6950265 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6950448 6950518 6950448 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6951351 6951647 6951351 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6952116 6952238 6952116 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 CDS 6952364 6952555 6952364 ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1
chr2_1 three_prime_UTR 6952556 6952834 6952556 ID=Msa0191320-mRNA-1:three_prime_utr;Parent=Msa0191320-mRNA-1
Gene Sequence

>Msa0191320

ATGGATCGTCCTTTATTTTCGGACCGAGTAACCGTCAACGGCACGGTAACGCCGTTAGCTCTTCTCACCGACGGTAGGCTATGGTGGTCGGAAGGAATTCAACGGTGTCTCTCCGTTGAAAAAGAGGTTCTCGGATTCGTCTCTAGTGGTTCATACATCAAACTCAAGACTCTTGTGGAAGCTCGTGACGGTTGCTGCACCACCGGTGAAGCTGGTAGACTCGTTCGTAACGACGTCGTTTTTAAACCCTCGTCGGAGGAAAATCTTAGGCTTTGGTGCCTGAAGCTTCATGAATTTATTGATTCTCTCGGTCGACCAAAGAAATTGCTTGTTTTTGTGAATCCATTTGGTGGGAAGAAATGTGCTGTCAAGATTTTTGCTGAACAAGTTAAACCACTTTTTGATGATGCTCAAATTCAACTCACTATACAAGAAACTAAACATCAGCTACATGCCAAAGAGGTTGCTCGTTCCTTGGATATTTCAAAGCACGATGGAATTGTTTGTATTAGTGGAGATGGAATTTTGGTTGAGGTTGTAAACGGGCTTCTTCAAAGAGAGGATTGGGATACAGCAATAAAGACGCCCCTTGGAATAGTTCCTGCAGGTACTGGAAATGGCATGGCAAAATCTCTGCTTGATTCAGTTGGTGATCCTTGCGCAATAGCCAATGCCGTTCTTGCCATCATTCGAGGCCATAAGCGACAGCTTGATGTGGCTACCATCACACAAGGGGAAACCAGATTTTTCAGTATATTGATGTTGGCATGGGGTCTAATTGCTGATATTGACATAGAGTCTGAAAAGTATCGGTGGATGGGAAGTGCTCGTCTAGATTTTTATGCTGTCTGCCGACTCTTCAATTTGAGGCTATACAATGGATCTGTTTCTTTTGTGCCTGCACCTGGGTTTGAGTCTTACGGGGAGTCCAGCAGTTACCCAGGCAAATCTACTATTAGAGGGAACAGTGGCGATCCAAGTGAAGGGGAACATGTTAATTTGCAAACACTTTGTTATCAAGGACCTGAAATAAACTTGGAAAATATGAATTGGAGAGTTATAAATGGACCCTTTATTAGTGTCTGGGTTCACAATGTACCTTGGGGTGCTGAAGACACAATGGCAGCACCAGATGCAAAGTTCTCCGACGGTTATCTGGACTTGATCATTACGAAGAATTGCCCGAAGTTACATTTGTTGTCAATGATGTCAGAGCTGAATAAGGGAGGACACGTGAAATCTCCGTATGTCACGTACCTAAAGGTGAAAGCTTTCAGCTTGGAACCTGGTACACGCACCAAGGACCTAGAAAAGGAAGGGATCATAGATTCAGATGGTGAGGTTTTGGCAAGAGGGAGAGGAACCTACAAGTGTGAGCAGAAGGCTTTGATGGCCTATGATAAATTGCAGATAACAGTGGATAAAGGTTTAGCTACACTTTTTACCCCTATGTAA

Protein sequence

>Msa0191320

MDRPLFSDRVTVNGTVTPLALLTDGRLWWSEGIQRCLSVEKEVLGFVSSGSYIKLKTLVEARDGCCTTGEAGRLVRNDVVFKPSSEENLRLWCLKLHEFIDSLGRPKKLLVFVNPFGGKKCAVKIFAEQVKPLFDDAQIQLTIQETKHQLHAKEVARSLDISKHDGIVCISGDGILVEVVNGLLQREDWDTAIKTPLGIVPAGTGNGMAKSLLDSVGDPCAIANAVLAIIRGHKRQLDVATITQGETRFFSILMLAWGLIADIDIESEKYRWMGSARLDFYAVCRLFNLRLYNGSVSFVPAPGFESYGESSSYPGKSTIRGNSGDPSEGEHVNLQTLCYQGPEINLENMNWRVINGPFISVWVHNVPWGAEDTMAAPDAKFSDGYLDLIITKNCPKLHLLSMMSELNKGGHVKSPYVTYLKVKAFSLEPGTRTKDLEKEGIIDSDGEVLARGRGTYKCEQKALMAYDKLQITVDKGLATLFTPM*