Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0191320 | XP_013462482.1 | 99.174 | 484 | 4 | 0 | 1 | 484 | 1 | 484 | 0.0 | 993 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0191320 | sp|Q8L7L1|SPHK1_ARATH | 64.092 | 479 | 161 | 1 | 5 | 483 | 17 | 484 | 0.0 | 644 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0191320 | A0A072V3V9 | 99.174 | 484 | 4 | 0 | 1 | 484 | 1 | 484 | 0.0 | 993 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0033970 | Msa0191320 | 0.816575 | 5.152264e-52 | -8.615850e-47 |
Msa0191320 | Msa0233410 | 0.956505 | 2.520122e-114 | -8.615850e-47 |
Msa0191320 | Msa0311970 | 0.924819 | 4.227292e-90 | -8.615850e-47 |
Msa0191320 | Msa0829440 | 0.944780 | 1.037439e-103 | -8.615850e-47 |
Msa0191320 | Msa0965780 | 0.808980 | 2.372171e-50 | -8.615850e-47 |
Msa0191320 | Msa1000800 | 0.800530 | 1.380549e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0191320 | MtrunA17_Chr2g0281181 | 99.174 | 484 | 4 | 0 | 1 | 484 | 1 | 484 | 0.0 | 993 |
Msa0191320 | MtrunA17_Chr6g0448931 | 35.238 | 210 | 126 | 6 | 106 | 309 | 268 | 473 | 3.58e-22 | 100 |
Msa0191320 | MtrunA17_Chr3g0079021 | 26.241 | 282 | 168 | 9 | 197 | 449 | 325 | 595 | 3.75e-17 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0191320 | AT4G21540.1 | 64.092 | 479 | 161 | 1 | 5 | 483 | 17 | 484 | 0.0 | 644 |
Msa0191320 | AT4G21534.1 | 60.504 | 476 | 173 | 4 | 10 | 483 | 17 | 479 | 0.0 | 602 |
Msa0191320 | AT4G21534.2 | 60.504 | 476 | 173 | 4 | 10 | 483 | 17 | 479 | 0.0 | 602 |
Msa0191320 | AT4G21540.3 | 61.702 | 376 | 133 | 1 | 5 | 380 | 17 | 381 | 1.16e-169 | 483 |
Msa0191320 | AT4G21540.2 | 64.561 | 285 | 90 | 1 | 199 | 483 | 1 | 274 | 4.91e-136 | 394 |
Msa0191320 | AT5G23450.2 | 33.495 | 206 | 129 | 5 | 108 | 309 | 249 | 450 | 4.83e-25 | 109 |
Msa0191320 | AT5G23450.1 | 33.495 | 206 | 129 | 5 | 108 | 309 | 249 | 450 | 4.83e-25 | 109 |
Msa0191320 | AT5G23450.5 | 33.495 | 206 | 129 | 5 | 108 | 309 | 249 | 450 | 4.83e-25 | 109 |
Msa0191320 | AT5G23450.4 | 33.495 | 206 | 129 | 5 | 108 | 309 | 249 | 450 | 5.92e-25 | 108 |
Msa0191320 | AT5G23450.3 | 31.222 | 221 | 129 | 6 | 108 | 309 | 249 | 465 | 1.12e-21 | 99.0 |
Msa0191320 | AT5G51290.1 | 26.182 | 275 | 170 | 9 | 197 | 449 | 322 | 585 | 1.30e-13 | 73.6 |
Find 156 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTGGTGGGGTCCACTTTC+CGG | 0.221113 | 2_1:+6948329 | Msa0191320:five_prime_UTR |
CATTTACTGAACCGGGTTTC+CGG | 0.236823 | 2_1:+6948302 | Msa0191320:five_prime_UTR |
AGATTCAGATGGTGAGGTTT+TGG | 0.263213 | 2_1:+6952426 | Msa0191320:CDS |
ATACTATAGATTATAGAATA+TGG | 0.264627 | 2_1:-6948211 | None:intergenic |
AAATTTAACCGCCAACAATT+TGG | 0.269751 | 2_1:-6952695 | None:intergenic |
GCAGTTCTCCGACGGTTATC+TGG | 0.285599 | 2_1:+6952112 | Msa0191320:intron |
TTATCATTACACTTTATCTT+TGG | 0.298023 | 2_1:-6952781 | None:intergenic |
TATTAGTGGAGATGGAATTT+TGG | 0.307587 | 2_1:+6949099 | Msa0191320:CDS |
CCACATCAAGCTGTCGCTTA+TGG | 0.316805 | 2_1:-6950266 | None:intergenic |
ATGAATTGGAGAGTTATAAA+TGG | 0.319462 | 2_1:+6951552 | Msa0191320:CDS |
AATGATGTCAGAGCTGAATA+AGG | 0.325937 | 2_1:+6952178 | Msa0191320:CDS |
CCGGATTTCATTTACTGAAC+CGG | 0.341892 | 2_1:+6948294 | Msa0191320:five_prime_UTR |
CACCTGGGTTTGAGTCTTAC+GGG | 0.346554 | 2_1:+6951409 | Msa0191320:CDS |
CCAGGCAAATCTACTATTAG+AGG | 0.349615 | 2_1:+6951447 | Msa0191320:CDS |
GATGGAATTGTTTGTATTAG+TGG | 0.356981 | 2_1:+6949085 | Msa0191320:CDS |
CAATAAATTCATGAAGCTTC+AGG | 0.363216 | 2_1:-6948632 | None:intergenic |
ATGGACCCTTTATTAGTGTC+TGG | 0.370216 | 2_1:+6951571 | Msa0191320:CDS |
TTGCAGATAACAGTGGATAA+AGG | 0.371104 | 2_1:+6952505 | Msa0191320:CDS |
TGTTATCTGCAATTTATCAT+AGG | 0.373214 | 2_1:-6952494 | None:intergenic |
GTTACTCGGTCCGAAAATAA+AGG | 0.379470 | 2_1:-6948363 | None:intergenic |
TAAACTTGGAAAATATGAAT+TGG | 0.383486 | 2_1:+6951538 | Msa0191320:CDS |
GTGAACCCAGACACTAATAA+AGG | 0.387070 | 2_1:-6951577 | None:intergenic |
CTGGGTTCACAATGTACCTT+GGG | 0.390540 | 2_1:+6951590 | Msa0191320:CDS |
CCTCGTCGGAGGAAAATCTT+AGG | 0.394221 | 2_1:+6948601 | Msa0191320:CDS |
TTGCAAACACTTTGTTATCA+AGG | 0.400837 | 2_1:+6951507 | Msa0191320:CDS |
GCACCTGGGTTTGAGTCTTA+CGG | 0.401683 | 2_1:+6951408 | Msa0191320:CDS |
ACCGGGTTTCCGGCTGAGAT+TGG | 0.404929 | 2_1:+6948312 | Msa0191320:five_prime_UTR |
CGGAGGAAAATCTTAGGCTT+TGG | 0.405855 | 2_1:+6948607 | Msa0191320:CDS |
CAAGGAACGAGCAACCTCTT+TGG | 0.408410 | 2_1:-6949047 | None:intergenic |
GGTTTCCGGCTGAGATTGGT+GGG | 0.408630 | 2_1:+6948316 | Msa0191320:five_prime_UTR |
GTGTGAGCAGAAGGCTTTGA+TGG | 0.409544 | 2_1:+6952471 | Msa0191320:CDS |
AGGTCCTTGGTGCGTGTACC+AGG | 0.410998 | 2_1:-6952385 | None:intergenic |
AGCCTTCTGCTCACACTTGT+AGG | 0.411998 | 2_1:-6952464 | None:intergenic |
GCCGTTCTTGCCATCATTCG+AGG | 0.424674 | 2_1:+6950136 | Msa0191320:CDS |
TGGGGTCCACTTTCCGGAGA+TGG | 0.427437 | 2_1:+6948335 | Msa0191320:exon |
ACTTTGTAAGGTACTGGAAA+TGG | 0.432146 | 2_1:+6950061 | Msa0191320:intron |
GCACATTTCTTCCCACCAAA+TGG | 0.437130 | 2_1:-6948851 | None:intergenic |
GGGTTTCCGGCTGAGATTGG+TGG | 0.438428 | 2_1:+6948315 | Msa0191320:five_prime_UTR |
CCTTTGTAACACCAAATTGT+TGG | 0.444550 | 2_1:+6952684 | Msa0191320:three_prime_UTR |
CCTCTAATAGTAGATTTGCC+TGG | 0.445558 | 2_1:-6951447 | None:intergenic |
GCTTCTTCAAAGAGAGGATT+GGG | 0.446128 | 2_1:+6949566 | Msa0191320:CDS |
TGCTGCACCACCGGTGAAGC+TGG | 0.447019 | 2_1:+6948546 | Msa0191320:CDS |
CCGTGCCGTTGACGGTTACT+CGG | 0.447055 | 2_1:-6948377 | None:intergenic |
CAATATATTTGATGCTGTAC+AGG | 0.447490 | 2_1:-6952649 | None:intergenic |
TCAGTATATTGATGTTGGCA+TGG | 0.447673 | 2_1:+6950319 | Msa0191320:CDS |
CGGATTTCATTTACTGAACC+GGG | 0.449349 | 2_1:+6948295 | Msa0191320:five_prime_UTR |
TCTGCCGACTCTTCAATTTG+AGG | 0.451311 | 2_1:+6951355 | Msa0191320:CDS |
TATCTCCGAGACGTGAAAAC+CGG | 0.452293 | 2_1:+6948275 | Msa0191320:five_prime_UTR |
CAGTATATTGATGTTGGCAT+GGG | 0.452709 | 2_1:+6950320 | Msa0191320:CDS |
CGGCGTTACCGTGCCGTTGA+CGG | 0.456879 | 2_1:-6948385 | None:intergenic |
ACAAAACTGACCTTTGCATC+TGG | 0.460288 | 2_1:-6951636 | None:intergenic |
GGCTTCTTCAAAGAGAGGAT+TGG | 0.462592 | 2_1:+6949565 | Msa0191320:CDS |
TGGACCCTTTATTAGTGTCT+GGG | 0.462795 | 2_1:+6951572 | Msa0191320:CDS |
CAAAGAGGTTGCTCGTTCCT+TGG | 0.463356 | 2_1:+6949048 | Msa0191320:CDS |
TTAACATGTTCCCCTTCACT+TGG | 0.470645 | 2_1:-6951483 | None:intergenic |
CCGGTTCAGTAAATGAAATC+CGG | 0.473779 | 2_1:-6948294 | None:intergenic |
ATTGTTTGTATTAGTGGAGA+TGG | 0.474601 | 2_1:+6949091 | Msa0191320:CDS |
CCCCTTGGAATAGTTCCTGC+AGG | 0.474665 | 2_1:+6949606 | Msa0191320:CDS |
TTACCCCTATGTAATACTCT+TGG | 0.481543 | 2_1:+6952542 | Msa0191320:exon |
CTCTAATAGTAGATTTGCCT+GGG | 0.487949 | 2_1:-6951446 | None:intergenic |
AATAAAGGACGATCCATCTC+CGG | 0.494389 | 2_1:-6948348 | None:intergenic |
TGAACCCAGACACTAATAAA+GGG | 0.495010 | 2_1:-6951576 | None:intergenic |
TCAAGGACCTGAAATAAACT+TGG | 0.497607 | 2_1:+6951524 | Msa0191320:CDS |
TTCTCACCGACGGTAGGCTA+TGG | 0.502494 | 2_1:+6948415 | Msa0191320:CDS |
ATTAACCAAGAGTATTACAT+AGG | 0.504287 | 2_1:-6952547 | None:intergenic |
TTGACAACAAATGTAACTTC+GGG | 0.505763 | 2_1:-6952157 | None:intergenic |
ATTGACAACAAATGTAACTT+CGG | 0.507378 | 2_1:-6952158 | None:intergenic |
ACCAATCTCAGCCGGAAACC+CGG | 0.507435 | 2_1:-6948313 | None:intergenic |
AGATTTGCCTGGGTAACTGC+TGG | 0.509934 | 2_1:-6951436 | None:intergenic |
CATGAATTTATTGATTCTCT+CGG | 0.510453 | 2_1:+6948642 | Msa0191320:CDS |
GTCTGAAAAGTATCGGTGGA+TGG | 0.510582 | 2_1:+6950473 | Msa0191320:CDS |
TCCGTATGTCACGTACCTAA+AGG | 0.512712 | 2_1:+6952217 | Msa0191320:CDS |
ACCTCGAATGATGGCAAGAA+CGG | 0.516893 | 2_1:-6950137 | None:intergenic |
TCTGGGTTCACAATGTACCT+TGG | 0.516933 | 2_1:+6951589 | Msa0191320:CDS |
CAAATTCAACTCACTATACA+AGG | 0.517431 | 2_1:+6948920 | Msa0191320:CDS |
AATGATGGCAAGAACGGCAT+TGG | 0.517676 | 2_1:-6950131 | None:intergenic |
AAATCTCTGCTTGATTCAGT+TGG | 0.518177 | 2_1:+6950091 | Msa0191320:CDS |
AACGAGTCTACCAGCTTCAC+CGG | 0.520838 | 2_1:-6948556 | None:intergenic |
TTAACCAAGAGTATTACATA+GGG | 0.530522 | 2_1:-6952546 | None:intergenic |
TGGACTGAAACCTCGAATGA+TGG | 0.530669 | 2_1:-6950146 | None:intergenic |
GACGATCCATCTCCGGAAAG+TGG | 0.536077 | 2_1:-6948341 | None:intergenic |
TTGTAACACCAAATTGTTGG+CGG | 0.541853 | 2_1:+6952687 | Msa0191320:three_prime_UTR |
ACGCACCAAGGACCTAGAAA+AGG | 0.542258 | 2_1:+6952393 | Msa0191320:CDS |
ATGATGTCAGAGCTGAATAA+GGG | 0.543037 | 2_1:+6952179 | Msa0191320:CDS |
CATCAAACTCAAGACTCTTG+TGG | 0.543663 | 2_1:+6948509 | Msa0191320:CDS |
CGTGACGGTTGCTGCACCAC+CGG | 0.543925 | 2_1:+6948537 | Msa0191320:CDS |
TAAGACTCAAACCCAGGTGC+AGG | 0.544026 | 2_1:-6951405 | None:intergenic |
ACAGCAATAAAGACGCCCCT+TGG | 0.545236 | 2_1:+6949591 | Msa0191320:CDS |
ACCTTTAGGTACGTGACATA+CGG | 0.546444 | 2_1:-6952218 | None:intergenic |
AACAGTGGCGATCCAAGTGA+AGG | 0.550761 | 2_1:+6951471 | Msa0191320:CDS |
TCTGAAAAGTATCGGTGGAT+GGG | 0.552297 | 2_1:+6950474 | Msa0191320:CDS |
CTCAATTGGCGTCAAAGTCA+AGG | 0.552376 | 2_1:+6948093 | None:intergenic |
AACCTACAAGTGTGAGCAGA+AGG | 0.552703 | 2_1:+6952462 | Msa0191320:CDS |
AAAGCTTTCAGCTTGGAACC+TGG | 0.553371 | 2_1:+6952367 | Msa0191320:CDS |
TCCCCGTAAGACTCAAACCC+AGG | 0.556710 | 2_1:-6951411 | None:intergenic |
TGGTAAATGCAGTTCTCCGA+CGG | 0.556721 | 2_1:+6952104 | Msa0191320:intron |
AAAGGTGAAAGCTTTCAGCT+TGG | 0.560686 | 2_1:+6952360 | Msa0191320:intron |
CAGGCAAATCTACTATTAGA+GGG | 0.572549 | 2_1:+6951448 | Msa0191320:CDS |
AACCTGCAGGAACTATTCCA+AGG | 0.573219 | 2_1:-6949608 | None:intergenic |
CATATATTATTGCAATCTCG+TGG | 0.573555 | 2_1:-6952820 | None:intergenic |
TGGACCCCACCAATCTCAGC+CGG | 0.575018 | 2_1:-6948321 | None:intergenic |
ACCTGCAGGAACTATTCCAA+GGG | 0.581978 | 2_1:-6949607 | None:intergenic |
TTCAATTTGAGGCTATACAA+TGG | 0.583619 | 2_1:+6951366 | Msa0191320:CDS |
ACATAGAGTCTGAAAAGTAT+CGG | 0.585230 | 2_1:+6950466 | Msa0191320:CDS |
ATCGTGCTTTGAAATATCCA+AGG | 0.586577 | 2_1:-6949065 | None:intergenic |
ACATCAGCTACATGCCAAAG+AGG | 0.586600 | 2_1:+6949033 | Msa0191320:CDS |
CCAAGGACCTAGAAAAGGAA+GGG | 0.587821 | 2_1:+6952398 | Msa0191320:CDS |
TCGGACCGAGTAACCGTCAA+CGG | 0.591061 | 2_1:+6948372 | Msa0191320:CDS |
AAACGGGCTTCTTCAAAGAG+AGG | 0.596062 | 2_1:+6949560 | Msa0191320:CDS |
GTGTACAATATTGCGTGGTG+TGG | 0.598718 | 2_1:-6952588 | None:intergenic |
ACCAAGGACCTAGAAAAGGA+AGG | 0.599301 | 2_1:+6952397 | Msa0191320:CDS |
GATCATAGATTCAGATGGTG+AGG | 0.602096 | 2_1:+6952420 | Msa0191320:CDS |
TCACCGACGGTAGGCTATGG+TGG | 0.602299 | 2_1:+6948418 | Msa0191320:CDS |
ACAGTGGCGATCCAAGTGAA+GGG | 0.602626 | 2_1:+6951472 | Msa0191320:CDS |
TCTGGTTTCCCCTTGTGTGA+TGG | 0.603088 | 2_1:-6950292 | None:intergenic |
CCAACAATTTGGTGTTACAA+AGG | 0.603222 | 2_1:-6952684 | None:intergenic |
CGACGGTAGGCTATGGTGGT+CGG | 0.603972 | 2_1:+6948422 | Msa0191320:CDS |
ATATTTGATGCTGTACAGGA+AGG | 0.606328 | 2_1:-6952645 | None:intergenic |
TAGCTCTTCTCACCGACGGT+AGG | 0.609654 | 2_1:+6948409 | Msa0191320:CDS |
GGGGAGTCCAGCAGTTACCC+AGG | 0.614345 | 2_1:+6951429 | Msa0191320:CDS |
GTAAGGTACTGGAAATGGCA+TGG | 0.615002 | 2_1:+6950066 | Msa0191320:intron |
AATGGCAGCACCAGATGCAA+AGG | 0.617345 | 2_1:+6951626 | Msa0191320:CDS |
GGTAGGCTATGGTGGTCGGA+AGG | 0.617653 | 2_1:+6948426 | Msa0191320:CDS |
ACGGCATTGGCTATTGCGCA+AGG | 0.619785 | 2_1:-6950118 | None:intergenic |
GTTTCCGGCTGAGATTGGTG+GGG | 0.623778 | 2_1:+6948317 | Msa0191320:five_prime_UTR |
ATAGCCTCAAATTGAAGAGT+CGG | 0.627949 | 2_1:-6951359 | None:intergenic |
TTGGATATTTCAAAGCACGA+TGG | 0.629196 | 2_1:+6949067 | Msa0191320:CDS |
GAAGGGATCATAGATTCAGA+TGG | 0.634115 | 2_1:+6952415 | Msa0191320:CDS |
GTTCTCGGATTCGTCTCTAG+TGG | 0.634222 | 2_1:+6948480 | Msa0191320:CDS |
CCATAAGCGACAGCTTGATG+TGG | 0.637287 | 2_1:+6950266 | Msa0191320:CDS |
AGTATATTGATGTTGGCATG+GGG | 0.637619 | 2_1:+6950321 | Msa0191320:CDS |
ACTCTTGTGGAAGCTCGTGA+CGG | 0.644300 | 2_1:+6948522 | Msa0191320:CDS |
CAGTGGCGATCCAAGTGAAG+GGG | 0.644789 | 2_1:+6951473 | Msa0191320:CDS |
CCGAGTAACCGTCAACGGCA+CGG | 0.645401 | 2_1:+6948377 | Msa0191320:CDS |
GAAAGAACTAAACATTAACA+TGG | 0.649943 | 2_1:-6948162 | None:intergenic |
GATGTGGCTACCATCACACA+AGG | 0.653053 | 2_1:+6950282 | Msa0191320:CDS |
ACCTGGGTTTGAGTCTTACG+GGG | 0.653794 | 2_1:+6951410 | Msa0191320:CDS |
TAGAGTCTGAAAAGTATCGG+TGG | 0.655131 | 2_1:+6950469 | Msa0191320:CDS |
ATTGTGTCTTCAGCACCCCA+AGG | 0.656208 | 2_1:-6951606 | None:intergenic |
CCGTCGGTGAGAAGAGCTAA+CGG | 0.657017 | 2_1:-6948405 | None:intergenic |
GATCAAGTCCAGATAACCGT+CGG | 0.657829 | 2_1:-6952120 | None:intergenic |
CCGTTAGCTCTTCTCACCGA+CGG | 0.661100 | 2_1:+6948405 | Msa0191320:CDS |
GGAACCTGGTACACGCACCA+AGG | 0.661636 | 2_1:+6952381 | Msa0191320:CDS |
GGTGGTCGGAAGGAATTCAA+CGG | 0.661973 | 2_1:+6948436 | Msa0191320:CDS |
TGATAAATTGCAGATAACAG+TGG | 0.665901 | 2_1:+6952498 | Msa0191320:CDS |
TGTGGCTACCATCACACAAG+GGG | 0.666829 | 2_1:+6950284 | Msa0191320:CDS |
ATGTCAGAGCTGAATAAGGG+AGG | 0.679486 | 2_1:+6952182 | Msa0191320:CDS |
CGACCACCATAGCCTACCGT+CGG | 0.689684 | 2_1:-6948421 | None:intergenic |
TCTACTATTAGAGGGAACAG+TGG | 0.691343 | 2_1:+6951456 | Msa0191320:CDS |
TTGGGGTGCTGAAGACACAA+TGG | 0.697160 | 2_1:+6951608 | Msa0191320:CDS |
ATGTGGCTACCATCACACAA+GGG | 0.702286 | 2_1:+6950283 | Msa0191320:CDS |
GAGTCTACCAGCTTCACCGG+TGG | 0.702423 | 2_1:-6948553 | None:intergenic |
TAACCAAGAGTATTACATAG+GGG | 0.710056 | 2_1:-6952545 | None:intergenic |
CCTGCAGGAACTATTCCAAG+GGG | 0.737821 | 2_1:-6949606 | None:intergenic |
TGTGTGTGTACAATATTGCG+TGG | 0.750543 | 2_1:-6952593 | None:intergenic |
TGGGTTCACAATGTACCTTG+GGG | 0.763075 | 2_1:+6951591 | Msa0191320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATAGTATTTTTTAATTTC+TGG | - | chr2_1:6948122-6948141 | None:intergenic | 10.0% |
!!! | CTTAATTTGTTTAATTTTAA+TGG | + | chr2_1:6951831-6951850 | Msa0191320:intron | 10.0% |
!! | ATCATTATTCTATTATAATT+TGG | + | chr2_1:6952084-6952103 | Msa0191320:intron | 10.0% |
!! | ATACTATAGATTATAGAATA+TGG | - | chr2_1:6948214-6948233 | None:intergenic | 15.0% |
!! | TTAGATTAGAAAGAAAAAAA+AGG | - | chr2_1:6949513-6949532 | None:intergenic | 15.0% |
!!! | CAAATATGTTATTTTATTTC+AGG | + | chr2_1:6950426-6950445 | Msa0191320:intron | 15.0% |
!! | TCAAATTATACTTTATGAAT+TGG | + | chr2_1:6951864-6951883 | Msa0191320:intron | 15.0% |
!! | CAGAAATTTATTGTTTATTA+TGG | - | chr2_1:6951937-6951956 | None:intergenic | 15.0% |
!! | ATTAAAAATATTTACACCAT+TGG | - | chr2_1:6952031-6952050 | None:intergenic | 15.0% |
!! | TTCACAACACAATATATTAA+TGG | - | chr2_1:6948773-6948792 | None:intergenic | 20.0% |
!!! | ACTATGAATTTTGATGATTT+AGG | + | chr2_1:6948797-6948816 | Msa0191320:intron | 20.0% |
!!! | CTATTTTACTATTAACTCTT+CGG | - | chr2_1:6949789-6949808 | None:intergenic | 20.0% |
!!! | GTAAAATAGGAATTTTATTC+AGG | + | chr2_1:6949800-6949819 | Msa0191320:intron | 20.0% |
!!! | ATTTTTCAGTATATTGATGT+TGG | + | chr2_1:6950314-6950333 | Msa0191320:CDS | 20.0% |
!! | AAGATGTGAACTTTATAAAA+TGG | - | chr2_1:6950531-6950550 | None:intergenic | 20.0% |
!!! | ACGTTTTTTTTTTTTTGACA+AGG | + | chr2_1:6950867-6950886 | Msa0191320:intron | 20.0% |
!!! | TTGTATCATAAATGAACTTT+TGG | + | chr2_1:6951174-6951193 | Msa0191320:intron | 20.0% |
!!! | ATATTTTCCAAGTTTATTTC+AGG | - | chr2_1:6951534-6951553 | None:intergenic | 20.0% |
!! | TAAACTTGGAAAATATGAAT+TGG | + | chr2_1:6951538-6951557 | Msa0191320:CDS | 20.0% |
!!! | TCTTTAGTTTGTGTTTTATT+TGG | + | chr2_1:6951705-6951724 | Msa0191320:intron | 20.0% |
!!! | AAAGTATTACACAATATATC+AGG | - | chr2_1:6952251-6952270 | None:intergenic | 20.0% |
!! | TTATCATTACACTTTATCTT+TGG | - | chr2_1:6952784-6952803 | None:intergenic | 20.0% |
! | GAAAGAACTAAACATTAACA+TGG | - | chr2_1:6948165-6948184 | None:intergenic | 25.0% |
!!! | CATGAATTTATTGATTCTCT+CGG | + | chr2_1:6948642-6948661 | Msa0191320:CDS | 25.0% |
! | ACAAAAACAAGCAATTTCTT+TGG | - | chr2_1:6948827-6948846 | None:intergenic | 25.0% |
! | CTTTGCAATATAAACATGAA+AGG | - | chr2_1:6949179-6949198 | None:intergenic | 25.0% |
!!! | TAGTTTGTGTTTATCTTTTG+AGG | + | chr2_1:6949199-6949218 | Msa0191320:intron | 25.0% |
! | TTCTCATGTAAGAATCATAA+TGG | + | chr2_1:6949316-6949335 | Msa0191320:intron | 25.0% |
!! | GAATCATAATGGTTTTTGTT+TGG | + | chr2_1:6949327-6949346 | Msa0191320:intron | 25.0% |
! | AATAGAAATTGTAACATCCA+TGG | + | chr2_1:6949390-6949409 | Msa0191320:intron | 25.0% |
! | ATAGAAATTGTAACATCCAT+GGG | + | chr2_1:6949391-6949410 | Msa0191320:intron | 25.0% |
!!! | ACATTTTAGTAGGTTGTAAA+CGG | + | chr2_1:6949543-6949562 | Msa0191320:intron | 25.0% |
!! | TTTTATGTTTTCTTGAGTAG+AGG | + | chr2_1:6949645-6949664 | Msa0191320:intron | 25.0% |
!! | TGTAAACTTTTTACTGAGAA+TGG | + | chr2_1:6949692-6949711 | Msa0191320:intron | 25.0% |
!! | GTAAACTTTTTACTGAGAAT+GGG | + | chr2_1:6949693-6949712 | Msa0191320:intron | 25.0% |
! | CGAAGAGTTAATAGTAAAAT+AGG | + | chr2_1:6949787-6949806 | Msa0191320:intron | 25.0% |
! | ATTCTAACAAAAATGATCTG+CGG | - | chr2_1:6949976-6949995 | None:intergenic | 25.0% |
! | ACATGTTTGAATGACATAAA+TGG | - | chr2_1:6950169-6950188 | None:intergenic | 25.0% |
! | CATGTATATGAAATATTGAC+AGG | + | chr2_1:6950243-6950262 | Msa0191320:intron | 25.0% |
! | CATCAATATACTGAAAAATC+TGG | - | chr2_1:6950313-6950332 | None:intergenic | 25.0% |
! | TAATTACTCTTACCATAGAT+TGG | + | chr2_1:6950344-6950363 | Msa0191320:intron | 25.0% |
! | GATAAAACAAGATTCCATTT+AGG | - | chr2_1:6950585-6950604 | None:intergenic | 25.0% |
! | AACAACTAATCACTAACATT+TGG | - | chr2_1:6950625-6950644 | None:intergenic | 25.0% |
! | CTTAAAATCACAAACAAACT+TGG | - | chr2_1:6950771-6950790 | None:intergenic | 25.0% |
!!! | TGATTTTAAGTTGAATGCTT+TGG | + | chr2_1:6950781-6950800 | Msa0191320:intron | 25.0% |
!! | AAATGTACGTTTGATTTCTT+CGG | + | chr2_1:6950821-6950840 | Msa0191320:intron | 25.0% |
! | GATATGTATACAGAAAAGTA+AGG | - | chr2_1:6951021-6951040 | None:intergenic | 25.0% |
!! | TATCATAAATGAACTTTTGG+TGG | + | chr2_1:6951177-6951196 | Msa0191320:intron | 25.0% |
! | GTTATAAAAGAGATATGAGT+TGG | + | chr2_1:6951289-6951308 | Msa0191320:intron | 25.0% |
! | ATGAATTGGAGAGTTATAAA+TGG | + | chr2_1:6951552-6951571 | Msa0191320:CDS | 25.0% |
!!! | ACAAACTAAAGAGTGTTAAT+GGG | - | chr2_1:6951697-6951716 | None:intergenic | 25.0% |
! | TGGAATCAATTCATACAAAT+TGG | - | chr2_1:6951777-6951796 | None:intergenic | 25.0% |
!! | TTTTCGTAGATAAATACCAA+TGG | + | chr2_1:6952012-6952031 | Msa0191320:intron | 25.0% |
! | ATTGACAACAAATGTAACTT+CGG | - | chr2_1:6952161-6952180 | None:intergenic | 25.0% |
! | TGTATCTTGCAATAAATCAA+AGG | + | chr2_1:6952342-6952361 | Msa0191320:intron | 25.0% |
! | TGTTATCTGCAATTTATCAT+AGG | - | chr2_1:6952497-6952516 | None:intergenic | 25.0% |
!!! | TTAACCAAGAGTATTACATA+GGG | - | chr2_1:6952549-6952568 | None:intergenic | 25.0% |
!!! | ATTAACCAAGAGTATTACAT+AGG | - | chr2_1:6952550-6952569 | None:intergenic | 25.0% |
!! | CTCTTGGTTAATTATTTTCT+CGG | + | chr2_1:6952558-6952577 | Msa0191320:three_prime_UTR | 25.0% |
!! | TCTTGGTTAATTATTTTCTC+GGG | + | chr2_1:6952559-6952578 | Msa0191320:three_prime_UTR | 25.0% |
CAATAAATTCATGAAGCTTC+AGG | - | chr2_1:6948635-6948654 | None:intergenic | 30.0% | |
!!! | CTTGTTTTTGTGAATCCATT+TGG | + | chr2_1:6948836-6948855 | Msa0191320:CDS | 30.0% |
! | TTTTTGTGAATCCATTTGGT+GGG | + | chr2_1:6948840-6948859 | Msa0191320:CDS | 30.0% |
ATTTGAGCATCATCAAAAAG+TGG | - | chr2_1:6948905-6948924 | None:intergenic | 30.0% | |
CAAATTCAACTCACTATACA+AGG | + | chr2_1:6948920-6948939 | Msa0191320:CDS | 30.0% | |
CACAAACTCAATCAACAAAA+AGG | - | chr2_1:6948998-6949017 | None:intergenic | 30.0% | |
GATGGAATTGTTTGTATTAG+TGG | + | chr2_1:6949085-6949104 | Msa0191320:CDS | 30.0% | |
ATTGTTTGTATTAGTGGAGA+TGG | + | chr2_1:6949091-6949110 | Msa0191320:CDS | 30.0% | |
! | TATTAGTGGAGATGGAATTT+TGG | + | chr2_1:6949099-6949118 | Msa0191320:CDS | 30.0% |
!! | ATGGTTTTTGTTTGGAAATG+AGG | + | chr2_1:6949335-6949354 | Msa0191320:intron | 30.0% |
!! | TGGTTTTTGTTTGGAAATGA+GGG | + | chr2_1:6949336-6949355 | Msa0191320:intron | 30.0% |
ATGGGAAGTAAAATTGCAAT+GGG | + | chr2_1:6949409-6949428 | Msa0191320:intron | 30.0% | |
!! | CATTTTAGTAGGTTGTAAAC+GGG | + | chr2_1:6949544-6949563 | Msa0191320:intron | 30.0% |
!! | CTGTGTATTGATTGTTTATC+AGG | + | chr2_1:6949731-6949750 | Msa0191320:intron | 30.0% |
AGCAATCCATTAAGAGATTT+CGG | - | chr2_1:6949884-6949903 | None:intergenic | 30.0% | |
ATTTGCTTGATTTACTTGCA+AGG | + | chr2_1:6949932-6949951 | Msa0191320:intron | 30.0% | |
ATTCAAACATGTCATATCCT+AGG | + | chr2_1:6950177-6950196 | Msa0191320:intron | 30.0% | |
! | TTTACAGTAATGAAGTACCT+AGG | - | chr2_1:6950197-6950216 | None:intergenic | 30.0% |
CAAAATGTGATGCTATTCAT+TGG | - | chr2_1:6950376-6950395 | None:intergenic | 30.0% | |
! | ATAGCATCACATTTTGTTGA+TGG | + | chr2_1:6950380-6950399 | Msa0191320:intron | 30.0% |
! | ACATAGAGTCTGAAAAGTAT+CGG | + | chr2_1:6950466-6950485 | Msa0191320:CDS | 30.0% |
TTAGTTGTTAGAATTGTTCG+CGG | + | chr2_1:6950636-6950655 | Msa0191320:intron | 30.0% | |
TTCGAAGATAATTGCAACAA+AGG | - | chr2_1:6950722-6950741 | None:intergenic | 30.0% | |
! | TTGAATGCTTTGGATTACTT+AGG | + | chr2_1:6950791-6950810 | Msa0191320:intron | 30.0% |
! | TGAATGCTTTGGATTACTTA+GGG | + | chr2_1:6950792-6950811 | Msa0191320:intron | 30.0% |
TGATTTCTTCGGATTACTTA+AGG | + | chr2_1:6950832-6950851 | Msa0191320:intron | 30.0% | |
! | AATATATCATCGGACTAGAA+TGG | - | chr2_1:6950916-6950935 | None:intergenic | 30.0% |
GAGGTAAAGGAATATATCAT+CGG | - | chr2_1:6950926-6950945 | None:intergenic | 30.0% | |
AATTAGAAAGGAAGAGGTAA+AGG | - | chr2_1:6950939-6950958 | None:intergenic | 30.0% | |
CATTGAAATTAGAAAGGAAG+AGG | - | chr2_1:6950945-6950964 | None:intergenic | 30.0% | |
GAAGTGCATTGAAATTAGAA+AGG | - | chr2_1:6950951-6950970 | None:intergenic | 30.0% | |
GAGAAAAGAGAAATACATCA+CGG | + | chr2_1:6951042-6951061 | Msa0191320:intron | 30.0% | |
! | GAAGTATCTCTCAAAATCAA+AGG | - | chr2_1:6951082-6951101 | None:intergenic | 30.0% |
! | GAGATACTTCTTAGTTCTTA+CGG | + | chr2_1:6951092-6951111 | Msa0191320:intron | 30.0% |
! | GTTAAATCTCTCATTTTGTG+TGG | + | chr2_1:6951114-6951133 | Msa0191320:intron | 30.0% |
! | TTTGTGTGGTTCTACTTTAA+AGG | + | chr2_1:6951128-6951147 | Msa0191320:intron | 30.0% |
! | TTCAATTTGAGGCTATACAA+TGG | + | chr2_1:6951366-6951385 | Msa0191320:CDS | 30.0% |
! | TTGCAAACACTTTGTTATCA+AGG | + | chr2_1:6951507-6951526 | Msa0191320:CDS | 30.0% |
!! | CACAAACTAAAGAGTGTTAA+TGG | - | chr2_1:6951698-6951717 | None:intergenic | 30.0% |
TTATTAGGTGTACAAAAACC+TGG | - | chr2_1:6951977-6951996 | None:intergenic | 30.0% | |
! | GCGTTTAGCTGAATTTTATT+AGG | - | chr2_1:6951992-6952011 | None:intergenic | 30.0% |
TTGACAACAAATGTAACTTC+GGG | - | chr2_1:6952160-6952179 | None:intergenic | 30.0% | |
TGATAAATTGCAGATAACAG+TGG | + | chr2_1:6952498-6952517 | Msa0191320:CDS | 30.0% | |
!! | TAACCAAGAGTATTACATAG+GGG | - | chr2_1:6952548-6952567 | None:intergenic | 30.0% |
CAATATATTTGATGCTGTAC+AGG | - | chr2_1:6952652-6952671 | None:intergenic | 30.0% | |
AAATTTAACCGCCAACAATT+TGG | - | chr2_1:6952698-6952717 | None:intergenic | 30.0% | |
! | GGTTTTCACAATCACAATGA+TGG | - | chr2_1:6948193-6948212 | None:intergenic | 35.0% |
!!! | GATGGATCGTCCTTTATTTT+CGG | + | chr2_1:6948353-6948372 | Msa0191320:exon | 35.0% |
! | CTTCCATAAGAAAGAAGTGT+CGG | - | chr2_1:6948726-6948745 | None:intergenic | 35.0% |
! | GTTTTTGTGAATCCATTTGG+TGG | + | chr2_1:6948839-6948858 | Msa0191320:CDS | 35.0% |
!! | ATCGTGCTTTGAAATATCCA+AGG | - | chr2_1:6949068-6949087 | None:intergenic | 35.0% |
TTGGATATTTCAAAGCACGA+TGG | + | chr2_1:6949067-6949086 | Msa0191320:CDS | 35.0% | |
TCCAAATAACCTAGCACTAT+TGG | + | chr2_1:6949228-6949247 | Msa0191320:intron | 35.0% | |
TCCAATAGTGCTAGGTTATT+TGG | - | chr2_1:6949232-6949251 | None:intergenic | 35.0% | |
! | CATTGCAATTTTACTTCCCA+TGG | - | chr2_1:6949410-6949429 | None:intergenic | 35.0% |
CATGGGAAGTAAAATTGCAA+TGG | + | chr2_1:6949408-6949427 | Msa0191320:intron | 35.0% | |
TGGGAAGTAAAATTGCAATG+GGG | + | chr2_1:6949410-6949429 | Msa0191320:intron | 35.0% | |
!! | CAAGCATCACACATTTTAGT+AGG | + | chr2_1:6949533-6949552 | Msa0191320:intron | 35.0% |
GAAACAAGAAATAAACCTGC+AGG | - | chr2_1:6949624-6949643 | None:intergenic | 35.0% | |
! | AACTTTTTACTGAGAATGGG+TGG | + | chr2_1:6949696-6949715 | Msa0191320:intron | 35.0% |
! | ACTTTTTACTGAGAATGGGT+GGG | + | chr2_1:6949697-6949716 | Msa0191320:intron | 35.0% |
TCTCAATTCTTGTATCAGCA+TGG | - | chr2_1:6949851-6949870 | None:intergenic | 35.0% | |
CAGTTACCGAAATCTCTTAA+TGG | + | chr2_1:6949875-6949894 | Msa0191320:intron | 35.0% | |
!! | GAAATCTCTTAATGGATTGC+TGG | + | chr2_1:6949883-6949902 | Msa0191320:intron | 35.0% |
! | ATGGATTGCTGGTCTATTAA+CGG | + | chr2_1:6949894-6949913 | Msa0191320:intron | 35.0% |
ATCTGTAGATAACGAGTGTA+TGG | + | chr2_1:6950001-6950020 | Msa0191320:intron | 35.0% | |
TCTGTAGATAACGAGTGTAT+GGG | + | chr2_1:6950002-6950021 | Msa0191320:intron | 35.0% | |
TATGGAAGAGCTTATTAGCT+TGG | - | chr2_1:6950042-6950061 | None:intergenic | 35.0% | |
AAGCTCTTCCATACTTTGTA+AGG | + | chr2_1:6950049-6950068 | Msa0191320:intron | 35.0% | |
TTCCATACTTTGTAAGGTAC+TGG | + | chr2_1:6950055-6950074 | Msa0191320:intron | 35.0% | |
TTCCAGTACCTTACAAAGTA+TGG | - | chr2_1:6950060-6950079 | None:intergenic | 35.0% | |
!! | ACTTTGTAAGGTACTGGAAA+TGG | + | chr2_1:6950061-6950080 | Msa0191320:intron | 35.0% |
AAATCTCTGCTTGATTCAGT+TGG | + | chr2_1:6950091-6950110 | Msa0191320:CDS | 35.0% | |
TCAGTATATTGATGTTGGCA+TGG | + | chr2_1:6950319-6950338 | Msa0191320:CDS | 35.0% | |
CAGTATATTGATGTTGGCAT+GGG | + | chr2_1:6950320-6950339 | Msa0191320:CDS | 35.0% | |
AGTATATTGATGTTGGCATG+GGG | + | chr2_1:6950321-6950340 | Msa0191320:CDS | 35.0% | |
TAGTTGTTAGAATTGTTCGC+GGG | + | chr2_1:6950637-6950656 | Msa0191320:intron | 35.0% | |
ACATAAGGATTGGAGAGATA+AGG | - | chr2_1:6950680-6950699 | None:intergenic | 35.0% | |
! | ATAGAGTGGTTTGGAACATA+AGG | - | chr2_1:6950695-6950714 | None:intergenic | 35.0% |
AAAAAATGTGTCACAAGCGA+AGG | - | chr2_1:6951242-6951261 | None:intergenic | 35.0% | |
ATAGCCTCAAATTGAAGAGT+CGG | - | chr2_1:6951362-6951381 | None:intergenic | 35.0% | |
CTCTAATAGTAGATTTGCCT+GGG | - | chr2_1:6951449-6951468 | None:intergenic | 35.0% | |
CAGGCAAATCTACTATTAGA+GGG | + | chr2_1:6951448-6951467 | Msa0191320:CDS | 35.0% | |
TCAAGGACCTGAAATAAACT+TGG | + | chr2_1:6951524-6951543 | Msa0191320:CDS | 35.0% | |
TGAACCCAGACACTAATAAA+GGG | - | chr2_1:6951579-6951598 | None:intergenic | 35.0% | |
TTCATCGCGATTTGTACATT+TGG | - | chr2_1:6951797-6951816 | None:intergenic | 35.0% | |
! | TGTTTTTCTCTTCTCCCTAA+TGG | + | chr2_1:6952050-6952069 | Msa0191320:intron | 35.0% |
! | GTTTTTCTCTTCTCCCTAAT+GGG | + | chr2_1:6952051-6952070 | Msa0191320:intron | 35.0% |
! | TTTTTCTCTTCTCCCTAATG+GGG | + | chr2_1:6952052-6952071 | Msa0191320:intron | 35.0% |
AATGATGTCAGAGCTGAATA+AGG | + | chr2_1:6952178-6952197 | Msa0191320:CDS | 35.0% | |
ATGATGTCAGAGCTGAATAA+GGG | + | chr2_1:6952179-6952198 | Msa0191320:CDS | 35.0% | |
TATCAGGAAATCACACCTTT+AGG | - | chr2_1:6952235-6952254 | None:intergenic | 35.0% | |
!! | ATTGAGCTTTGAAAGAGTCT+TGG | + | chr2_1:6952283-6952302 | Msa0191320:intron | 35.0% |
TTGCAGATAACAGTGGATAA+AGG | + | chr2_1:6952505-6952524 | Msa0191320:CDS | 35.0% | |
TTACCCCTATGTAATACTCT+TGG | + | chr2_1:6952542-6952561 | Msa0191320:exon | 35.0% | |
ATATTTGATGCTGTACAGGA+AGG | - | chr2_1:6952648-6952667 | None:intergenic | 35.0% | |
!! | CCAACAATTTGGTGTTACAA+AGG | - | chr2_1:6952687-6952706 | None:intergenic | 35.0% |
CCTTTGTAACACCAAATTGT+TGG | + | chr2_1:6952684-6952703 | Msa0191320:three_prime_UTR | 35.0% | |
TTGTAACACCAAATTGTTGG+CGG | + | chr2_1:6952687-6952706 | Msa0191320:three_prime_UTR | 35.0% | |
!!! | TTTTCTTGAGTTGAGTGAGA+GGG | + | chr2_1:6952751-6952770 | Msa0191320:three_prime_UTR | 35.0% |
CCGGTTCAGTAAATGAAATC+CGG | - | chr2_1:6948297-6948316 | None:intergenic | 40.0% | |
CCGGATTTCATTTACTGAAC+CGG | + | chr2_1:6948294-6948313 | Msa0191320:five_prime_UTR | 40.0% | |
CGGATTTCATTTACTGAACC+GGG | + | chr2_1:6948295-6948314 | Msa0191320:five_prime_UTR | 40.0% | |
AATAAAGGACGATCCATCTC+CGG | - | chr2_1:6948351-6948370 | None:intergenic | 40.0% | |
GTTACTCGGTCCGAAAATAA+AGG | - | chr2_1:6948366-6948385 | None:intergenic | 40.0% | |
TCCGTTGAAAAAGAGGTTCT+CGG | + | chr2_1:6948465-6948484 | Msa0191320:CDS | 40.0% | |
!!! | TCCGAGAACCTCTTTTTCAA+CGG | - | chr2_1:6948469-6948488 | None:intergenic | 40.0% |
CATCAAACTCAAGACTCTTG+TGG | + | chr2_1:6948509-6948528 | Msa0191320:CDS | 40.0% | |
!!! | TGGAGATGGAATTTTGGTTG+AGG | + | chr2_1:6949105-6949124 | Msa0191320:CDS | 40.0% |
AAGCATGATCCAATAGTGCT+AGG | - | chr2_1:6949240-6949259 | None:intergenic | 40.0% | |
GGGAAGTAAAATTGCAATGG+GGG | + | chr2_1:6949411-6949430 | Msa0191320:intron | 40.0% | |
GCTTCTTCAAAGAGAGGATT+GGG | + | chr2_1:6949566-6949585 | Msa0191320:CDS | 40.0% | |
! | TGGTACTGGGATAAGGATTA+GGG | - | chr2_1:6949831-6949850 | None:intergenic | 40.0% |
! | ATGGTACTGGGATAAGGATT+AGG | - | chr2_1:6949832-6949851 | None:intergenic | 40.0% |
TCTTGTATCAGCATGGTACT+GGG | - | chr2_1:6949844-6949863 | None:intergenic | 40.0% | |
TTCTTGTATCAGCATGGTAC+TGG | - | chr2_1:6949845-6949864 | None:intergenic | 40.0% | |
!! | TAGAGTCTGAAAAGTATCGG+TGG | + | chr2_1:6950469-6950488 | Msa0191320:CDS | 40.0% |
!! | TCTGAAAAGTATCGGTGGAT+GGG | + | chr2_1:6950474-6950493 | Msa0191320:CDS | 40.0% |
CTGAATATGAGCGTCCTAAA+TGG | + | chr2_1:6950568-6950587 | Msa0191320:intron | 40.0% | |
AGTTGTTAGAATTGTTCGCG+GGG | + | chr2_1:6950638-6950657 | Msa0191320:intron | 40.0% | |
! | GTGGTTTGGAACATAAGGAT+TGG | - | chr2_1:6950690-6950709 | None:intergenic | 40.0% |
AAAGGAGTGATAGAGTGGTT+TGG | - | chr2_1:6950704-6950723 | None:intergenic | 40.0% | |
ATCTTCGAACACTTCAGTTC+TGG | + | chr2_1:6950733-6950752 | Msa0191320:intron | 40.0% | |
TCTTCGAACACTTCAGTTCT+GGG | + | chr2_1:6950734-6950753 | Msa0191320:intron | 40.0% | |
ATTAAGCAGATAGAAGCTGC+AGG | - | chr2_1:6950984-6951003 | None:intergenic | 40.0% | |
GAGAAATACATCACGGCTTT+AGG | + | chr2_1:6951049-6951068 | Msa0191320:intron | 40.0% | |
CCTCTAATAGTAGATTTGCC+TGG | - | chr2_1:6951450-6951469 | None:intergenic | 40.0% | |
CCAGGCAAATCTACTATTAG+AGG | + | chr2_1:6951447-6951466 | Msa0191320:CDS | 40.0% | |
TCTACTATTAGAGGGAACAG+TGG | + | chr2_1:6951456-6951475 | Msa0191320:CDS | 40.0% | |
TTAACATGTTCCCCTTCACT+TGG | - | chr2_1:6951486-6951505 | None:intergenic | 40.0% | |
ATGGACCCTTTATTAGTGTC+TGG | + | chr2_1:6951571-6951590 | Msa0191320:CDS | 40.0% | |
TGGACCCTTTATTAGTGTCT+GGG | + | chr2_1:6951572-6951591 | Msa0191320:CDS | 40.0% | |
GTGAACCCAGACACTAATAA+AGG | - | chr2_1:6951580-6951599 | None:intergenic | 40.0% | |
ACAAAACTGACCTTTGCATC+TGG | - | chr2_1:6951639-6951658 | None:intergenic | 40.0% | |
ACAAATTGGTCCTCCTAATG+AGG | - | chr2_1:6951763-6951782 | None:intergenic | 40.0% | |
!! | GTACTCTTTTAACTGCTACC+AGG | + | chr2_1:6951956-6951975 | Msa0191320:intron | 40.0% |
!! | GATCAGTTTTAGCCCCATTA+GGG | - | chr2_1:6952067-6952086 | None:intergenic | 40.0% |
!! | TGATCAGTTTTAGCCCCATT+AGG | - | chr2_1:6952068-6952087 | None:intergenic | 40.0% |
ACCTTTAGGTACGTGACATA+CGG | - | chr2_1:6952221-6952240 | None:intergenic | 40.0% | |
! | CTTTGAAAGAGTCTTGGCAT+TGG | + | chr2_1:6952289-6952308 | Msa0191320:intron | 40.0% |
AAAGGTGAAAGCTTTCAGCT+TGG | + | chr2_1:6952360-6952379 | Msa0191320:intron | 40.0% | |
! | CTATGATCCCTTCCTTTTCT+AGG | - | chr2_1:6952408-6952427 | None:intergenic | 40.0% |
GAAGGGATCATAGATTCAGA+TGG | + | chr2_1:6952415-6952434 | Msa0191320:CDS | 40.0% | |
GATCATAGATTCAGATGGTG+AGG | + | chr2_1:6952420-6952439 | Msa0191320:CDS | 40.0% | |
! | AGATTCAGATGGTGAGGTTT+TGG | + | chr2_1:6952426-6952445 | Msa0191320:CDS | 40.0% |
TGTGTGTGTACAATATTGCG+TGG | - | chr2_1:6952596-6952615 | None:intergenic | 40.0% | |
!!! | CTTTTCTTGAGTTGAGTGAG+AGG | + | chr2_1:6952750-6952769 | Msa0191320:three_prime_UTR | 40.0% |
TATCTCCGAGACGTGAAAAC+CGG | + | chr2_1:6948275-6948294 | Msa0191320:five_prime_UTR | 45.0% | |
! | GAAATCCGGTTTTCACGTCT+CGG | - | chr2_1:6948283-6948302 | None:intergenic | 45.0% |
CATTTACTGAACCGGGTTTC+CGG | + | chr2_1:6948302-6948321 | Msa0191320:five_prime_UTR | 45.0% | |
GTGTCTCTCCGTTGAAAAAG+AGG | + | chr2_1:6948458-6948477 | Msa0191320:CDS | 45.0% | |
!!! | CGTCGTTTTTAAACCCTCGT+CGG | + | chr2_1:6948587-6948606 | Msa0191320:CDS | 45.0% |
! | CTAAGATTTTCCTCCGACGA+GGG | - | chr2_1:6948603-6948622 | None:intergenic | 45.0% |
CGGAGGAAAATCTTAGGCTT+TGG | + | chr2_1:6948607-6948626 | Msa0191320:CDS | 45.0% | |
! | GCACCGACACTTCTTTCTTA+TGG | + | chr2_1:6948720-6948739 | Msa0191320:intron | 45.0% |
GCACATTTCTTCCCACCAAA+TGG | - | chr2_1:6948854-6948873 | None:intergenic | 45.0% | |
ACATCAGCTACATGCCAAAG+AGG | + | chr2_1:6949033-6949052 | Msa0191320:CDS | 45.0% | |
TTAGTCCTTCTGAGCTTCAG+CGG | - | chr2_1:6949371-6949390 | None:intergenic | 45.0% | |
! | AAACGGGCTTCTTCAAAGAG+AGG | + | chr2_1:6949560-6949579 | Msa0191320:CDS | 45.0% |
GGCTTCTTCAAAGAGAGGAT+TGG | + | chr2_1:6949565-6949584 | Msa0191320:CDS | 45.0% | |
ACCTGCAGGAACTATTCCAA+GGG | - | chr2_1:6949610-6949629 | None:intergenic | 45.0% | |
AACCTGCAGGAACTATTCCA+AGG | - | chr2_1:6949611-6949630 | None:intergenic | 45.0% | |
! | ATCAGCATGGTACTGGGATA+AGG | - | chr2_1:6949838-6949857 | None:intergenic | 45.0% |
!! | GTAAGGTACTGGAAATGGCA+TGG | + | chr2_1:6950066-6950085 | Msa0191320:intron | 45.0% |
AATGATGGCAAGAACGGCAT+TGG | - | chr2_1:6950134-6950153 | None:intergenic | 45.0% | |
ACCTCGAATGATGGCAAGAA+CGG | - | chr2_1:6950140-6950159 | None:intergenic | 45.0% | |
TGGACTGAAACCTCGAATGA+TGG | - | chr2_1:6950149-6950168 | None:intergenic | 45.0% | |
ATGTGGCTACCATCACACAA+GGG | + | chr2_1:6950283-6950302 | Msa0191320:CDS | 45.0% | |
CATTGGCAGTCTCCAATCTA+TGG | - | chr2_1:6950359-6950378 | None:intergenic | 45.0% | |
!! | GTCTGAAAAGTATCGGTGGA+TGG | + | chr2_1:6950473-6950492 | Msa0191320:CDS | 45.0% |
GCAACAAAGGAGTGATAGAG+TGG | - | chr2_1:6950709-6950728 | None:intergenic | 45.0% | |
CAGCAGGAAAGCAGTGAATA+AGG | - | chr2_1:6951328-6951347 | None:intergenic | 45.0% | |
ATTCACTGCTTTCCTGCTGT+AGG | + | chr2_1:6951329-6951348 | Msa0191320:intron | 45.0% | |
!! | TCTGCCGACTCTTCAATTTG+AGG | + | chr2_1:6951355-6951374 | Msa0191320:CDS | 45.0% |
! | TTTCTTTTGTGCCTGCACCT+GGG | + | chr2_1:6951394-6951413 | Msa0191320:CDS | 45.0% |
TCTGGGTTCACAATGTACCT+TGG | + | chr2_1:6951589-6951608 | Msa0191320:CDS | 45.0% | |
CTGGGTTCACAATGTACCTT+GGG | + | chr2_1:6951590-6951609 | Msa0191320:CDS | 45.0% | |
TGGGTTCACAATGTACCTTG+GGG | + | chr2_1:6951591-6951610 | Msa0191320:CDS | 45.0% | |
TGGTAAATGCAGTTCTCCGA+CGG | + | chr2_1:6952104-6952123 | Msa0191320:intron | 45.0% | |
GATCAAGTCCAGATAACCGT+CGG | - | chr2_1:6952123-6952142 | None:intergenic | 45.0% | |
ATGTCAGAGCTGAATAAGGG+AGG | + | chr2_1:6952182-6952201 | Msa0191320:CDS | 45.0% | |
TCCGTATGTCACGTACCTAA+AGG | + | chr2_1:6952217-6952236 | Msa0191320:CDS | 45.0% | |
AAAGCTTTCAGCTTGGAACC+TGG | + | chr2_1:6952367-6952386 | Msa0191320:CDS | 45.0% | |
ACCAAGGACCTAGAAAAGGA+AGG | + | chr2_1:6952397-6952416 | Msa0191320:CDS | 45.0% | |
CCAAGGACCTAGAAAAGGAA+GGG | + | chr2_1:6952398-6952417 | Msa0191320:CDS | 45.0% | |
!! | ATGGTGAGGTTTTGGCAAGA+GGG | + | chr2_1:6952434-6952453 | Msa0191320:CDS | 45.0% |
AACCTACAAGTGTGAGCAGA+AGG | + | chr2_1:6952462-6952481 | Msa0191320:CDS | 45.0% | |
GTGTACAATATTGCGTGGTG+TGG | - | chr2_1:6952591-6952610 | None:intergenic | 45.0% | |
!!! | TAAATTTTGAATTATTAATA+CGG | + | chr2_1:6952711-6952730 | Msa0191320:three_prime_UTR | 5.0% |
GGTGGTCGGAAGGAATTCAA+CGG | + | chr2_1:6948436-6948455 | Msa0191320:CDS | 50.0% | |
GTTCTCGGATTCGTCTCTAG+TGG | + | chr2_1:6948480-6948499 | Msa0191320:CDS | 50.0% | |
ACTCTTGTGGAAGCTCGTGA+CGG | + | chr2_1:6948522-6948541 | Msa0191320:CDS | 50.0% | |
AACGAGTCTACCAGCTTCAC+CGG | - | chr2_1:6948559-6948578 | None:intergenic | 50.0% | |
! | CGTTTTTAAACCCTCGTCGG+AGG | + | chr2_1:6948590-6948609 | Msa0191320:CDS | 50.0% |
! | CCTAAGATTTTCCTCCGACG+AGG | - | chr2_1:6948604-6948623 | None:intergenic | 50.0% |
CCTCGTCGGAGGAAAATCTT+AGG | + | chr2_1:6948601-6948620 | Msa0191320:CDS | 50.0% | |
CAAGGAACGAGCAACCTCTT+TGG | - | chr2_1:6949050-6949069 | None:intergenic | 50.0% | |
CAAAGAGGTTGCTCGTTCCT+TGG | + | chr2_1:6949048-6949067 | Msa0191320:CDS | 50.0% | |
TGATACCGCTGAAGCTCAGA+AGG | + | chr2_1:6949363-6949382 | Msa0191320:intron | 50.0% | |
ACAGCAATAAAGACGCCCCT+TGG | + | chr2_1:6949591-6949610 | Msa0191320:CDS | 50.0% | |
CCTGCAGGAACTATTCCAAG+GGG | - | chr2_1:6949609-6949628 | None:intergenic | 50.0% | |
! | CCACATCAAGCTGTCGCTTA+TGG | - | chr2_1:6950269-6950288 | None:intergenic | 50.0% |
CCATAAGCGACAGCTTGATG+TGG | + | chr2_1:6950266-6950285 | Msa0191320:CDS | 50.0% | |
GATGTGGCTACCATCACACA+AGG | + | chr2_1:6950282-6950301 | Msa0191320:CDS | 50.0% | |
TGTGGCTACCATCACACAAG+GGG | + | chr2_1:6950284-6950303 | Msa0191320:CDS | 50.0% | |
! | TCTGGTTTCCCCTTGTGTGA+TGG | - | chr2_1:6950295-6950314 | None:intergenic | 50.0% |
! | GTTTCTTTTGTGCCTGCACC+TGG | + | chr2_1:6951393-6951412 | Msa0191320:CDS | 50.0% |
TAAGACTCAAACCCAGGTGC+AGG | - | chr2_1:6951408-6951427 | None:intergenic | 50.0% | |
GCACCTGGGTTTGAGTCTTA+CGG | + | chr2_1:6951408-6951427 | Msa0191320:CDS | 50.0% | |
CACCTGGGTTTGAGTCTTAC+GGG | + | chr2_1:6951409-6951428 | Msa0191320:CDS | 50.0% | |
ACCTGGGTTTGAGTCTTACG+GGG | + | chr2_1:6951410-6951429 | Msa0191320:CDS | 50.0% | |
AGATTTGCCTGGGTAACTGC+TGG | - | chr2_1:6951439-6951458 | None:intergenic | 50.0% | |
AACAGTGGCGATCCAAGTGA+AGG | + | chr2_1:6951471-6951490 | Msa0191320:CDS | 50.0% | |
ACAGTGGCGATCCAAGTGAA+GGG | + | chr2_1:6951472-6951491 | Msa0191320:CDS | 50.0% | |
ATTGTGTCTTCAGCACCCCA+AGG | - | chr2_1:6951609-6951628 | None:intergenic | 50.0% | |
!! | TTGGGGTGCTGAAGACACAA+TGG | + | chr2_1:6951608-6951627 | Msa0191320:CDS | 50.0% |
AATGGCAGCACCAGATGCAA+AGG | + | chr2_1:6951626-6951645 | Msa0191320:CDS | 50.0% | |
TCCCAATTGCTTCCGTGACT+AGG | + | chr2_1:6951733-6951752 | Msa0191320:intron | 50.0% | |
CCCTAGTCACGGAAGCAATT+GGG | - | chr2_1:6951737-6951756 | None:intergenic | 50.0% | |
CCCAATTGCTTCCGTGACTA+GGG | + | chr2_1:6951734-6951753 | Msa0191320:intron | 50.0% | |
ACCCTAGTCACGGAAGCAAT+TGG | - | chr2_1:6951738-6951757 | None:intergenic | 50.0% | |
AATTGCTTCCGTGACTAGGG+TGG | + | chr2_1:6951737-6951756 | Msa0191320:intron | 50.0% | |
TAATGAGGCCACCCTAGTCA+CGG | - | chr2_1:6951748-6951767 | None:intergenic | 50.0% | |
ACGCACCAAGGACCTAGAAA+AGG | + | chr2_1:6952393-6952412 | Msa0191320:CDS | 50.0% | |
! | CCCTTCCTTTTCTAGGTCCT+TGG | - | chr2_1:6952401-6952420 | None:intergenic | 50.0% |
!! | GATGGTGAGGTTTTGGCAAG+AGG | + | chr2_1:6952433-6952452 | Msa0191320:CDS | 50.0% |
AGCCTTCTGCTCACACTTGT+AGG | - | chr2_1:6952467-6952486 | None:intergenic | 50.0% | |
! | GTGTGAGCAGAAGGCTTTGA+TGG | + | chr2_1:6952471-6952490 | Msa0191320:CDS | 50.0% |
ACCAATCTCAGCCGGAAACC+CGG | - | chr2_1:6948316-6948335 | None:intergenic | 55.0% | |
GGTTTCCGGCTGAGATTGGT+GGG | + | chr2_1:6948316-6948335 | Msa0191320:five_prime_UTR | 55.0% | |
GTTTCCGGCTGAGATTGGTG+GGG | + | chr2_1:6948317-6948336 | Msa0191320:five_prime_UTR | 55.0% | |
GATTGGTGGGGTCCACTTTC+CGG | + | chr2_1:6948329-6948348 | Msa0191320:five_prime_UTR | 55.0% | |
GACGATCCATCTCCGGAAAG+TGG | - | chr2_1:6948344-6948363 | None:intergenic | 55.0% | |
TCGGACCGAGTAACCGTCAA+CGG | + | chr2_1:6948372-6948391 | Msa0191320:CDS | 55.0% | |
CCGTCGGTGAGAAGAGCTAA+CGG | - | chr2_1:6948408-6948427 | None:intergenic | 55.0% | |
! | CCGTTAGCTCTTCTCACCGA+CGG | + | chr2_1:6948405-6948424 | Msa0191320:CDS | 55.0% |
TAGCTCTTCTCACCGACGGT+AGG | + | chr2_1:6948409-6948428 | Msa0191320:CDS | 55.0% | |
TTCTCACCGACGGTAGGCTA+TGG | + | chr2_1:6948415-6948434 | Msa0191320:CDS | 55.0% | |
CCCCTTGGAATAGTTCCTGC+AGG | + | chr2_1:6949606-6949625 | Msa0191320:CDS | 55.0% | |
!! | ACGGCATTGGCTATTGCGCA+AGG | - | chr2_1:6950121-6950140 | None:intergenic | 55.0% |
GCCGTTCTTGCCATCATTCG+AGG | + | chr2_1:6950136-6950155 | Msa0191320:CDS | 55.0% | |
TCCCCGTAAGACTCAAACCC+AGG | - | chr2_1:6951414-6951433 | None:intergenic | 55.0% | |
CAGTGGCGATCCAAGTGAAG+GGG | + | chr2_1:6951473-6951492 | Msa0191320:CDS | 55.0% | |
GTGACTAGGGTGGCCTCATT+AGG | + | chr2_1:6951747-6951766 | Msa0191320:intron | 55.0% | |
ACTAGGGTGGCCTCATTAGG+AGG | + | chr2_1:6951750-6951769 | Msa0191320:intron | 55.0% | |
GCAGTTCTCCGACGGTTATC+TGG | + | chr2_1:6952112-6952131 | Msa0191320:intron | 55.0% | |
!! | GAGGTTTTGGCAAGAGGGAG+AGG | + | chr2_1:6952439-6952458 | Msa0191320:CDS | 55.0% |
ACCGGGTTTCCGGCTGAGAT+TGG | + | chr2_1:6948312-6948331 | Msa0191320:five_prime_UTR | 60.0% | |
GGGTTTCCGGCTGAGATTGG+TGG | + | chr2_1:6948315-6948334 | Msa0191320:five_prime_UTR | 60.0% | |
TGGACCCCACCAATCTCAGC+CGG | - | chr2_1:6948324-6948343 | None:intergenic | 60.0% | |
TGGGGTCCACTTTCCGGAGA+TGG | + | chr2_1:6948335-6948354 | Msa0191320:exon | 60.0% | |
! | CCGTGCCGTTGACGGTTACT+CGG | - | chr2_1:6948380-6948399 | None:intergenic | 60.0% |
CCGAGTAACCGTCAACGGCA+CGG | + | chr2_1:6948377-6948396 | Msa0191320:CDS | 60.0% | |
TCACCGACGGTAGGCTATGG+TGG | + | chr2_1:6948418-6948437 | Msa0191320:CDS | 60.0% | |
CGACCACCATAGCCTACCGT+CGG | - | chr2_1:6948424-6948443 | None:intergenic | 60.0% | |
CGACGGTAGGCTATGGTGGT+CGG | + | chr2_1:6948422-6948441 | Msa0191320:CDS | 60.0% | |
GGTAGGCTATGGTGGTCGGA+AGG | + | chr2_1:6948426-6948445 | Msa0191320:CDS | 60.0% | |
GAGTCTACCAGCTTCACCGG+TGG | - | chr2_1:6948556-6948575 | None:intergenic | 60.0% | |
GGAACCTGGTACACGCACCA+AGG | + | chr2_1:6952381-6952400 | Msa0191320:CDS | 60.0% | |
! | AGGTCCTTGGTGCGTGTACC+AGG | - | chr2_1:6952388-6952407 | None:intergenic | 60.0% |
! | CGGCGTTACCGTGCCGTTGA+CGG | - | chr2_1:6948388-6948407 | None:intergenic | 65.0% |
CGTGACGGTTGCTGCACCAC+CGG | + | chr2_1:6948537-6948556 | Msa0191320:CDS | 65.0% | |
TGCTGCACCACCGGTGAAGC+TGG | + | chr2_1:6948546-6948565 | Msa0191320:CDS | 65.0% | |
GTCGGCAGACAGCCTACAGC+AGG | - | chr2_1:6951344-6951363 | None:intergenic | 65.0% | |
GGGGAGTCCAGCAGTTACCC+AGG | + | chr2_1:6951429-6951448 | Msa0191320:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 6948105 | 6952834 | 6948105 | ID=Msa0191320;Name=Msa0191320 |
chr2_1 | mRNA | 6948105 | 6952834 | 6948105 | ID=Msa0191320-mRNA-1;Parent=Msa0191320;Name=Msa0191320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=249|1|1|1|1|1|10|279|484 |
chr2_1 | exon | 6948105 | 6948663 | 6948105 | ID=Msa0191320-mRNA-1:exon:3165;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6948819 | 6948941 | 6948819 | ID=Msa0191320-mRNA-1:exon:3166;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6949026 | 6949126 | 6949026 | ID=Msa0191320-mRNA-1:exon:3167;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6949555 | 6949627 | 6949555 | ID=Msa0191320-mRNA-1:exon:3168;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6950071 | 6950157 | 6950071 | ID=Msa0191320-mRNA-1:exon:3169;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6950265 | 6950342 | 6950265 | ID=Msa0191320-mRNA-1:exon:3170;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6950448 | 6950518 | 6950448 | ID=Msa0191320-mRNA-1:exon:3171;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6951351 | 6951647 | 6951351 | ID=Msa0191320-mRNA-1:exon:3172;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6952116 | 6952238 | 6952116 | ID=Msa0191320-mRNA-1:exon:3173;Parent=Msa0191320-mRNA-1 |
chr2_1 | exon | 6952364 | 6952834 | 6952364 | ID=Msa0191320-mRNA-1:exon:3174;Parent=Msa0191320-mRNA-1 |
chr2_1 | five_prime_UTR | 6948105 | 6948353 | 6948105 | ID=Msa0191320-mRNA-1:five_prime_utr;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6948354 | 6948663 | 6948354 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6948819 | 6948941 | 6948819 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6949026 | 6949126 | 6949026 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6949555 | 6949627 | 6949555 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6950071 | 6950157 | 6950071 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6950265 | 6950342 | 6950265 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6950448 | 6950518 | 6950448 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6951351 | 6951647 | 6951351 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6952116 | 6952238 | 6952116 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | CDS | 6952364 | 6952555 | 6952364 | ID=Msa0191320-mRNA-1:cds;Parent=Msa0191320-mRNA-1 |
chr2_1 | three_prime_UTR | 6952556 | 6952834 | 6952556 | ID=Msa0191320-mRNA-1:three_prime_utr;Parent=Msa0191320-mRNA-1 |
Gene Sequence |
Protein sequence |