Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233410 | XP_013462482.1 | 98.377 | 308 | 5 | 0 | 1 | 308 | 177 | 484 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233410 | sp|Q8L7L1|SPHK1_ARATH | 65.472 | 307 | 95 | 2 | 1 | 307 | 189 | 484 | 5.10e-149 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233410 | A0A072V3V9 | 98.377 | 308 | 5 | 0 | 1 | 308 | 177 | 484 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033970 | Msa0233410 | 0.833624 | 4.791045e-56 | -8.615850e-47 |
| Msa0086190 | Msa0233410 | 0.801530 | 8.620061e-49 | -8.615850e-47 |
| Msa0128030 | Msa0233410 | 0.812304 | 4.534159e-51 | -8.615850e-47 |
| Msa0132430 | Msa0233410 | 0.800365 | 1.491541e-48 | -8.615850e-47 |
| Msa0174100 | Msa0233410 | 0.811281 | 7.571196e-51 | -8.615850e-47 |
| Msa0191320 | Msa0233410 | 0.956505 | 2.520122e-114 | -8.615850e-47 |
| Msa0233410 | Msa0311970 | 0.945850 | 1.408832e-104 | -8.615850e-47 |
| Msa0233410 | Msa0708600 | 0.806745 | 7.085351e-50 | -8.615850e-47 |
| Msa0233410 | Msa0829440 | 0.937193 | 5.151313e-98 | -8.615850e-47 |
| Msa0233410 | Msa0965780 | 0.811067 | 8.426519e-51 | -8.615850e-47 |
| Msa0233410 | Msa1000800 | 0.810938 | 8.985970e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233410 | MtrunA17_Chr2g0281181 | 98.377 | 308 | 5 | 0 | 1 | 308 | 177 | 484 | 0.0 | 632 |
| Msa0233410 | MtrunA17_Chr3g0079021 | 26.241 | 282 | 168 | 9 | 21 | 273 | 325 | 595 | 2.94e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233410 | AT4G21540.1 | 65.472 | 307 | 95 | 2 | 1 | 307 | 189 | 484 | 5.18e-150 | 430 |
| Msa0233410 | AT4G21534.1 | 62.866 | 307 | 103 | 1 | 1 | 307 | 184 | 479 | 8.49e-145 | 416 |
| Msa0233410 | AT4G21534.2 | 62.866 | 307 | 103 | 1 | 1 | 307 | 184 | 479 | 8.49e-145 | 416 |
| Msa0233410 | AT4G21540.2 | 64.912 | 285 | 89 | 2 | 23 | 307 | 1 | 274 | 2.93e-139 | 395 |
| Msa0233410 | AT4G21540.3 | 61.765 | 204 | 67 | 2 | 1 | 204 | 189 | 381 | 1.74e-88 | 270 |
| Msa0233410 | AT5G51290.1 | 26.087 | 299 | 184 | 11 | 1 | 273 | 298 | 585 | 4.05e-15 | 76.3 |
Find 101 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCAGATGGTGAGGTTT+TGG | 0.263213 | 2_2:+5758102 | Msa0233410:CDS |
| AAATTTAACCGCCAACAATT+TGG | 0.269751 | 2_2:-5758371 | None:intergenic |
| GCAGTTCTCCGACGGTTATC+TGG | 0.285599 | 2_2:+5757788 | Msa0233410:intron |
| TTATCATTACACTTTATCTT+TGG | 0.298023 | 2_2:-5758457 | None:intergenic |
| CCACATCAAGCTGTCGCTTA+TGG | 0.316805 | 2_2:-5755799 | None:intergenic |
| ATGAATTGGAGAGTTATAAA+TGG | 0.319462 | 2_2:+5757089 | Msa0233410:CDS |
| AATGATGTCAGAGCTGAATA+AGG | 0.325937 | 2_2:+5757854 | Msa0233410:CDS |
| CACCTGGGTTTGAGTCTTAC+GGG | 0.346554 | 2_2:+5756946 | Msa0233410:CDS |
| CCAGGCAAATCTACTATTAG+AGG | 0.349615 | 2_2:+5756984 | Msa0233410:CDS |
| ATGGACCCTTTATTAGTGTC+TGG | 0.370216 | 2_2:+5757108 | Msa0233410:CDS |
| TTGCAGATAACAGTGGATAA+AGG | 0.371104 | 2_2:+5758181 | Msa0233410:CDS |
| TGTTATCTGCAATTTATCAT+AGG | 0.373214 | 2_2:-5758170 | None:intergenic |
| TAAACTTGGAAAATATGAAT+TGG | 0.383486 | 2_2:+5757075 | Msa0233410:CDS |
| GTGAACCCAGACACTAATAA+AGG | 0.387070 | 2_2:-5757114 | None:intergenic |
| CTGGGTTCACAATGTACCTT+GGG | 0.390540 | 2_2:+5757127 | Msa0233410:CDS |
| TTGCAAACACTTTGTTATCA+AGG | 0.400837 | 2_2:+5757044 | Msa0233410:CDS |
| GCACCTGGGTTTGAGTCTTA+CGG | 0.401683 | 2_2:+5756945 | Msa0233410:CDS |
| GTGTGAGCAGAAGGCTTTGA+TGG | 0.409544 | 2_2:+5758147 | Msa0233410:CDS |
| AGGTCCTTGGTGCGTGTACC+AGG | 0.410998 | 2_2:-5758061 | None:intergenic |
| AGCCTTCTGCTCACACTTGT+AGG | 0.411998 | 2_2:-5758140 | None:intergenic |
| GCCGTTCTTGCCATCATTCG+AGG | 0.424674 | 2_2:+5755669 | Msa0233410:CDS |
| ACTTTGTAAGGTACTGGAAA+TGG | 0.432146 | 2_2:+5755594 | Msa0233410:intron |
| CCTTTGTAACACCAAATTGT+TGG | 0.444550 | 2_2:+5758360 | Msa0233410:three_prime_UTR |
| CCTCTAATAGTAGATTTGCC+TGG | 0.445558 | 2_2:-5756984 | None:intergenic |
| GCTTCTTCAAAGAGAGGATT+GGG | 0.446128 | 2_2:+5755099 | Msa0233410:CDS |
| CAATATATTTGATGCTGTAC+AGG | 0.447490 | 2_2:-5758325 | None:intergenic |
| TCAGTATATTGATGTTGGCA+TGG | 0.447673 | 2_2:+5755852 | Msa0233410:CDS |
| TCTGCCGACTCTTCAATTTG+AGG | 0.451311 | 2_2:+5756892 | Msa0233410:CDS |
| CAGTATATTGATGTTGGCAT+GGG | 0.452709 | 2_2:+5755853 | Msa0233410:CDS |
| ACAAAACTGACCTTTGCATC+TGG | 0.460288 | 2_2:-5757173 | None:intergenic |
| GGCTTCTTCAAAGAGAGGAT+TGG | 0.462592 | 2_2:+5755098 | Msa0233410:CDS |
| TGGACCCTTTATTAGTGTCT+GGG | 0.462795 | 2_2:+5757109 | Msa0233410:CDS |
| TTAACATGTTCCCCTTCACT+TGG | 0.470645 | 2_2:-5757020 | None:intergenic |
| CCCCTTGGAATAGTTCCTGC+AGG | 0.474665 | 2_2:+5755139 | Msa0233410:CDS |
| TTACCCCTATGTAATACTCT+TGG | 0.481543 | 2_2:+5758218 | Msa0233410:exon |
| CTCTAATAGTAGATTTGCCT+GGG | 0.487949 | 2_2:-5756983 | None:intergenic |
| TGAACCCAGACACTAATAAA+GGG | 0.495010 | 2_2:-5757113 | None:intergenic |
| TCAAGGACCTGAAATAAACT+TGG | 0.497607 | 2_2:+5757061 | Msa0233410:CDS |
| ATTAACCAAGAGTATTACAT+AGG | 0.504287 | 2_2:-5758223 | None:intergenic |
| TTGACAACAAATGTAACTTC+GGG | 0.505763 | 2_2:-5757833 | None:intergenic |
| ATTGACAACAAATGTAACTT+CGG | 0.507378 | 2_2:-5757834 | None:intergenic |
| AGATTTGCCTGGGTAACTGC+TGG | 0.509934 | 2_2:-5756973 | None:intergenic |
| GTCTGAAAAGTATCGGTGGA+TGG | 0.510582 | 2_2:+5756006 | Msa0233410:CDS |
| TCCGTATGTCACGTACCTAA+AGG | 0.512712 | 2_2:+5757893 | Msa0233410:CDS |
| ACCTCGAATGATGGCAAGAA+CGG | 0.516893 | 2_2:-5755670 | None:intergenic |
| TCTGGGTTCACAATGTACCT+TGG | 0.516933 | 2_2:+5757126 | Msa0233410:CDS |
| AATGATGGCAAGAACGGCAT+TGG | 0.517676 | 2_2:-5755664 | None:intergenic |
| AAATCTCTGCTTGATTCAGT+TGG | 0.518177 | 2_2:+5755624 | Msa0233410:CDS |
| TTAACCAAGAGTATTACATA+GGG | 0.530522 | 2_2:-5758222 | None:intergenic |
| TGGACTGAAACCTCGAATGA+TGG | 0.530669 | 2_2:-5755679 | None:intergenic |
| TTGTAACACCAAATTGTTGG+CGG | 0.541853 | 2_2:+5758363 | Msa0233410:three_prime_UTR |
| ACGCACCAAGGACCTAGAAA+AGG | 0.542258 | 2_2:+5758069 | Msa0233410:CDS |
| ATGATGTCAGAGCTGAATAA+GGG | 0.543037 | 2_2:+5757855 | Msa0233410:CDS |
| TAAGACTCAAACCCAGGTGC+AGG | 0.544026 | 2_2:-5756942 | None:intergenic |
| ACAGCAATAAAGACGCCCCT+TGG | 0.545236 | 2_2:+5755124 | Msa0233410:CDS |
| ACCTTTAGGTACGTGACATA+CGG | 0.546444 | 2_2:-5757894 | None:intergenic |
| TCTGAAAAGTATCGGTGGAT+GGG | 0.552297 | 2_2:+5756007 | Msa0233410:CDS |
| AACCTACAAGTGTGAGCAGA+AGG | 0.552703 | 2_2:+5758138 | Msa0233410:CDS |
| AAAGCTTTCAGCTTGGAACC+TGG | 0.553371 | 2_2:+5758043 | Msa0233410:CDS |
| AACAGTAGCGATCCAAGTGA+AGG | 0.555499 | 2_2:+5757008 | Msa0233410:CDS |
| TCCCCGTAAGACTCAAACCC+AGG | 0.556710 | 2_2:-5756948 | None:intergenic |
| TGGTAAATGCAGTTCTCCGA+CGG | 0.556721 | 2_2:+5757780 | Msa0233410:intron |
| AAAGGTGAAAGCTTTCAGCT+TGG | 0.560686 | 2_2:+5758036 | Msa0233410:intron |
| CAGGCAAATCTACTATTAGA+GGG | 0.572549 | 2_2:+5756985 | Msa0233410:CDS |
| AACCTGCAGGAACTATTCCA+AGG | 0.573219 | 2_2:-5755141 | None:intergenic |
| ACCTGCAGGAACTATTCCAA+GGG | 0.581978 | 2_2:-5755140 | None:intergenic |
| TTCAATTTGAGGCTATACAA+TGG | 0.583619 | 2_2:+5756903 | Msa0233410:CDS |
| ACATAGAGTCTGAAAAGTAT+CGG | 0.585230 | 2_2:+5755999 | Msa0233410:CDS |
| CCAAGGACCTAGAAAAGGAA+GGG | 0.587821 | 2_2:+5758074 | Msa0233410:CDS |
| AAACGGGCTTCTTCAAAGAG+AGG | 0.596062 | 2_2:+5755093 | Msa0233410:CDS |
| ACAGTAGCGATCCAAGTGAA+GGG | 0.596263 | 2_2:+5757009 | Msa0233410:CDS |
| GTGTACAATATTGCGTGGTG+TGG | 0.598718 | 2_2:-5758264 | None:intergenic |
| ACCAAGGACCTAGAAAAGGA+AGG | 0.599301 | 2_2:+5758073 | Msa0233410:CDS |
| GATCATAGATTCAGATGGTG+AGG | 0.602096 | 2_2:+5758096 | Msa0233410:CDS |
| TCTGGTTTCCCCTTGTGTGA+TGG | 0.603088 | 2_2:-5755825 | None:intergenic |
| CCAACAATTTGGTGTTACAA+AGG | 0.603222 | 2_2:-5758360 | None:intergenic |
| ATATTTGATGCTGTACAGGA+AGG | 0.606328 | 2_2:-5758321 | None:intergenic |
| GGGGAGTCCAGCAGTTACCC+AGG | 0.614345 | 2_2:+5756966 | Msa0233410:CDS |
| GTAAGGTACTGGAAATGGCA+TGG | 0.615002 | 2_2:+5755599 | Msa0233410:intron |
| AATGGCAGCACCAGATGCAA+AGG | 0.617345 | 2_2:+5757163 | Msa0233410:CDS |
| ACGGCATTGGCTATTGCGCA+AGG | 0.619785 | 2_2:-5755651 | None:intergenic |
| ATAGCCTCAAATTGAAGAGT+CGG | 0.627949 | 2_2:-5756896 | None:intergenic |
| GAAGGGATCATAGATTCAGA+TGG | 0.634115 | 2_2:+5758091 | Msa0233410:CDS |
| CCATAAGCGACAGCTTGATG+TGG | 0.637287 | 2_2:+5755799 | Msa0233410:CDS |
| AGTATATTGATGTTGGCATG+GGG | 0.637619 | 2_2:+5755854 | Msa0233410:CDS |
| CAGTAGCGATCCAAGTGAAG+GGG | 0.649527 | 2_2:+5757010 | Msa0233410:CDS |
| GATGTGGCTACCATCACACA+AGG | 0.653053 | 2_2:+5755815 | Msa0233410:CDS |
| ACCTGGGTTTGAGTCTTACG+GGG | 0.653794 | 2_2:+5756947 | Msa0233410:CDS |
| TAGAGTCTGAAAAGTATCGG+TGG | 0.655131 | 2_2:+5756002 | Msa0233410:CDS |
| ATTGTGTCTTCAGCACCCCA+AGG | 0.656208 | 2_2:-5757143 | None:intergenic |
| GATCAAGTCCAGATAACCGT+CGG | 0.657829 | 2_2:-5757796 | None:intergenic |
| GGAACCTGGTACACGCACCA+AGG | 0.661636 | 2_2:+5758057 | Msa0233410:CDS |
| TGATAAATTGCAGATAACAG+TGG | 0.665901 | 2_2:+5758174 | Msa0233410:CDS |
| TGTGGCTACCATCACACAAG+GGG | 0.666829 | 2_2:+5755817 | Msa0233410:CDS |
| ATGTCAGAGCTGAATAAGGG+AGG | 0.679486 | 2_2:+5757858 | Msa0233410:CDS |
| TTGGGGTGCTGAAGACACAA+TGG | 0.697160 | 2_2:+5757145 | Msa0233410:CDS |
| ATGTGGCTACCATCACACAA+GGG | 0.702286 | 2_2:+5755816 | Msa0233410:CDS |
| TAACCAAGAGTATTACATAG+GGG | 0.710056 | 2_2:-5758221 | None:intergenic |
| CCTGCAGGAACTATTCCAAG+GGG | 0.737821 | 2_2:-5755139 | None:intergenic |
| TGTGTGTGTACAATATTGCG+TGG | 0.750543 | 2_2:-5758269 | None:intergenic |
| TGGGTTCACAATGTACCTTG+GGG | 0.763075 | 2_2:+5757128 | Msa0233410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTGACA+AGG | + | chr2_2:5756403-5756422 | Msa0233410:intron | 10.0% |
| !!! | CTTAATTTGTTTAATTTTAA+TGG | + | chr2_2:5757368-5757387 | Msa0233410:intron | 10.0% |
| !! | ATCATTATTCTATTATAATT+TGG | + | chr2_2:5757760-5757779 | Msa0233410:intron | 10.0% |
| !! | TTAGATTAGAAAGAAAAAAA+AGG | - | chr2_2:5755046-5755065 | None:intergenic | 15.0% |
| !!! | CAAATATGTTATTTTATTTC+AGG | + | chr2_2:5755959-5755978 | Msa0233410:intron | 15.0% |
| !! | TCAAATTATACTTTATGAAT+TGG | + | chr2_2:5757540-5757559 | Msa0233410:intron | 15.0% |
| !! | CAGAAATTTATTGTTTATTA+TGG | - | chr2_2:5757613-5757632 | None:intergenic | 15.0% |
| !! | ATTAAAAATATTTACACCAT+TGG | - | chr2_2:5757707-5757726 | None:intergenic | 15.0% |
| !!! | CTATTTTACTATTAACTCTT+CGG | - | chr2_2:5755322-5755341 | None:intergenic | 20.0% |
| !!! | GTAAAATAGGAATTTTATTC+AGG | + | chr2_2:5755333-5755352 | Msa0233410:intron | 20.0% |
| !! | AATGTATATGAAATATTGAC+AGG | + | chr2_2:5755776-5755795 | Msa0233410:intron | 20.0% |
| !!! | ATTTTTCAGTATATTGATGT+TGG | + | chr2_2:5755847-5755866 | Msa0233410:CDS | 20.0% |
| !! | AAGATGTGAACTTTATAAAA+TGG | - | chr2_2:5756064-5756083 | None:intergenic | 20.0% |
| !!! | TTGTATCATAAATGAACTTT+TGG | + | chr2_2:5756710-5756729 | Msa0233410:intron | 20.0% |
| !!! | ATATTTTCCAAGTTTATTTC+AGG | - | chr2_2:5757071-5757090 | None:intergenic | 20.0% |
| !! | TAAACTTGGAAAATATGAAT+TGG | + | chr2_2:5757075-5757094 | Msa0233410:CDS | 20.0% |
| !!! | TCTTTAGTTTGTGTTTTATT+TGG | + | chr2_2:5757242-5757261 | Msa0233410:intron | 20.0% |
| !!! | AAAGTATTACACAATATATC+AGG | - | chr2_2:5757927-5757946 | None:intergenic | 20.0% |
| !! | TTATCATTACACTTTATCTT+TGG | - | chr2_2:5758460-5758479 | None:intergenic | 20.0% |
| ! | AATAGAAATTGTAACATCCA+TGG | + | chr2_2:5754922-5754941 | Msa0233410:intron | 25.0% |
| ! | ATAGAAATTGTAACATCCAT+GGG | + | chr2_2:5754923-5754942 | Msa0233410:intron | 25.0% |
| !!! | ACATTTTAGTAGGTTGTAAA+CGG | + | chr2_2:5755076-5755095 | Msa0233410:intron | 25.0% |
| !! | TTTTATGTTTTCTTGAGTAG+AGG | + | chr2_2:5755178-5755197 | Msa0233410:intron | 25.0% |
| !! | TGTAAACTTTTTACTGAGAA+TGG | + | chr2_2:5755225-5755244 | Msa0233410:intron | 25.0% |
| !! | GTAAACTTTTTACTGAGAAT+GGG | + | chr2_2:5755226-5755245 | Msa0233410:intron | 25.0% |
| ! | CGAAGAGTTAATAGTAAAAT+AGG | + | chr2_2:5755320-5755339 | Msa0233410:intron | 25.0% |
| ! | ATTTGCTTGATTTACTTACA+AGG | + | chr2_2:5755465-5755484 | Msa0233410:intron | 25.0% |
| ! | ATTCTAACAAAAATGATCTG+CGG | - | chr2_2:5755509-5755528 | None:intergenic | 25.0% |
| ! | ACATGTTTGAATGACATAAA+TGG | - | chr2_2:5755702-5755721 | None:intergenic | 25.0% |
| ! | CATCAATATACTGAAAAATC+TGG | - | chr2_2:5755846-5755865 | None:intergenic | 25.0% |
| ! | TAATTACTCTTACCATAGAT+TGG | + | chr2_2:5755877-5755896 | Msa0233410:intron | 25.0% |
| ! | GATAAAACAAGATTCCATTT+AGG | - | chr2_2:5756118-5756137 | None:intergenic | 25.0% |
| ! | AACAACTAATCACTAACATT+TGG | - | chr2_2:5756158-5756177 | None:intergenic | 25.0% |
| ! | TTAGAAGATAATTGCAACAA+AGG | - | chr2_2:5756255-5756274 | None:intergenic | 25.0% |
| ! | CTTAAAATCACAAACAAACT+TGG | - | chr2_2:5756304-5756323 | None:intergenic | 25.0% |
| !!! | TGATTTTAAGTTGAATGCTT+TGG | + | chr2_2:5756314-5756333 | Msa0233410:intron | 25.0% |
| !! | AAATGTACGTTTGATTTCTT+CGG | + | chr2_2:5756354-5756373 | Msa0233410:intron | 25.0% |
| ! | AATTAGAAAGAAAGAGGTAA+AGG | - | chr2_2:5756475-5756494 | None:intergenic | 25.0% |
| ! | CATTGAAATTAGAAAGAAAG+AGG | - | chr2_2:5756481-5756500 | None:intergenic | 25.0% |
| ! | GATATGTATACAGAAAAGTA+AGG | - | chr2_2:5756557-5756576 | None:intergenic | 25.0% |
| !! | TATCATAAATGAACTTTTGG+TGG | + | chr2_2:5756713-5756732 | Msa0233410:intron | 25.0% |
| ! | GTTATAAAAGAGATATGAGT+TGG | + | chr2_2:5756826-5756845 | Msa0233410:intron | 25.0% |
| ! | ATGAATTGGAGAGTTATAAA+TGG | + | chr2_2:5757089-5757108 | Msa0233410:CDS | 25.0% |
| !!! | ACAAACTAAAGAGTGTTAAT+GGG | - | chr2_2:5757234-5757253 | None:intergenic | 25.0% |
| ! | TGGAATCAATTCATACAAAT+TGG | - | chr2_2:5757314-5757333 | None:intergenic | 25.0% |
| ! | TACCATTAGAAAAGATTTAG+AGG | + | chr2_2:5757395-5757414 | Msa0233410:intron | 25.0% |
| !! | TTTTCGTAGATAAATACCAA+TGG | + | chr2_2:5757688-5757707 | Msa0233410:intron | 25.0% |
| ! | ATTGACAACAAATGTAACTT+CGG | - | chr2_2:5757837-5757856 | None:intergenic | 25.0% |
| ! | TGTATCTTGCAATAAATCAA+AGG | + | chr2_2:5758018-5758037 | Msa0233410:intron | 25.0% |
| ! | TGTTATCTGCAATTTATCAT+AGG | - | chr2_2:5758173-5758192 | None:intergenic | 25.0% |
| !!! | TTAACCAAGAGTATTACATA+GGG | - | chr2_2:5758225-5758244 | None:intergenic | 25.0% |
| !!! | ATTAACCAAGAGTATTACAT+AGG | - | chr2_2:5758226-5758245 | None:intergenic | 25.0% |
| !! | CTCTTGGTTAATTATTTTCT+CGG | + | chr2_2:5758234-5758253 | Msa0233410:three_prime_UTR | 25.0% |
| !! | TCTTGGTTAATTATTTTCTC+GGG | + | chr2_2:5758235-5758254 | Msa0233410:three_prime_UTR | 25.0% |
| ATGGGAAGTAAAATTGCAAT+GGG | + | chr2_2:5754941-5754960 | Msa0233410:intron | 30.0% | |
| !! | CATTTTAGTAGGTTGTAAAC+GGG | + | chr2_2:5755077-5755096 | Msa0233410:intron | 30.0% |
| !! | CTGTGTATTGATTGTTTATC+AGG | + | chr2_2:5755264-5755283 | Msa0233410:intron | 30.0% |
| AGCAATCCATTAAGAGATTT+CGG | - | chr2_2:5755417-5755436 | None:intergenic | 30.0% | |
| ATTCAAACATGTCATATCCT+AGG | + | chr2_2:5755710-5755729 | Msa0233410:intron | 30.0% | |
| ! | TTTACAGTAATGAAGTACCT+AGG | - | chr2_2:5755730-5755749 | None:intergenic | 30.0% |
| CAAAATGTGATGCTATTCAT+TGG | - | chr2_2:5755909-5755928 | None:intergenic | 30.0% | |
| ! | ATAGCATCACATTTTGTTGA+TGG | + | chr2_2:5755913-5755932 | Msa0233410:intron | 30.0% |
| ! | ACATAGAGTCTGAAAAGTAT+CGG | + | chr2_2:5755999-5756018 | Msa0233410:CDS | 30.0% |
| TTAGTTGTTAGAATTGTTCG+CGG | + | chr2_2:5756169-5756188 | Msa0233410:intron | 30.0% | |
| ! | TTGAATGCTTTGGATTACTT+AGG | + | chr2_2:5756324-5756343 | Msa0233410:intron | 30.0% |
| ! | TGAATGCTTTGGATTACTTA+GGG | + | chr2_2:5756325-5756344 | Msa0233410:intron | 30.0% |
| TGATTTCTTCGGATTACTTA+AGG | + | chr2_2:5756365-5756384 | Msa0233410:intron | 30.0% | |
| ! | AATATATCATCGGACTAGAA+TGG | - | chr2_2:5756452-5756471 | None:intergenic | 30.0% |
| GAGGTAAAGGAATATATCAT+CGG | - | chr2_2:5756462-5756481 | None:intergenic | 30.0% | |
| GAGAAAAGAGAAATACATCA+CGG | + | chr2_2:5756578-5756597 | Msa0233410:intron | 30.0% | |
| ! | GAAGTATCTCTCAAAATCAA+AGG | - | chr2_2:5756618-5756637 | None:intergenic | 30.0% |
| ! | GAGATACTTCTTAGTTCTTA+CGG | + | chr2_2:5756628-5756647 | Msa0233410:intron | 30.0% |
| ! | GTTAAATCTCTCATTTTGTG+TGG | + | chr2_2:5756650-5756669 | Msa0233410:intron | 30.0% |
| ! | TTTGTGTGGTTCTACTTTAA+AGG | + | chr2_2:5756664-5756683 | Msa0233410:intron | 30.0% |
| ! | TTCAATTTGAGGCTATACAA+TGG | + | chr2_2:5756903-5756922 | Msa0233410:CDS | 30.0% |
| ! | TTGCAAACACTTTGTTATCA+AGG | + | chr2_2:5757044-5757063 | Msa0233410:CDS | 30.0% |
| !! | CACAAACTAAAGAGTGTTAA+TGG | - | chr2_2:5757235-5757254 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr2_2:5757400-5757419 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | - | chr2_2:5757435-5757454 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | + | chr2_2:5757439-5757458 | Msa0233410:intron | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | + | chr2_2:5757442-5757461 | Msa0233410:intron | 30.0% | |
| TTATTAGGTGTACAAAAACC+TGG | - | chr2_2:5757653-5757672 | None:intergenic | 30.0% | |
| ! | GCGTTTAGCTGAATTTTATT+AGG | - | chr2_2:5757668-5757687 | None:intergenic | 30.0% |
| TTGACAACAAATGTAACTTC+GGG | - | chr2_2:5757836-5757855 | None:intergenic | 30.0% | |
| TGATAAATTGCAGATAACAG+TGG | + | chr2_2:5758174-5758193 | Msa0233410:CDS | 30.0% | |
| !! | TAACCAAGAGTATTACATAG+GGG | - | chr2_2:5758224-5758243 | None:intergenic | 30.0% |
| CAATATATTTGATGCTGTAC+AGG | - | chr2_2:5758328-5758347 | None:intergenic | 30.0% | |
| AAATTTAACCGCCAACAATT+TGG | - | chr2_2:5758374-5758393 | None:intergenic | 30.0% | |
| ! | CATTGCAATTTTACTTCCCA+TGG | - | chr2_2:5754942-5754961 | None:intergenic | 35.0% |
| CATGGGAAGTAAAATTGCAA+TGG | + | chr2_2:5754940-5754959 | Msa0233410:intron | 35.0% | |
| TGGGAAGTAAAATTGCAATG+GGG | + | chr2_2:5754942-5754961 | Msa0233410:intron | 35.0% | |
| !! | CAAGCATCACACATTTTAGT+AGG | + | chr2_2:5755066-5755085 | Msa0233410:intron | 35.0% |
| GAAACAAGAAATAAACCTGC+AGG | - | chr2_2:5755157-5755176 | None:intergenic | 35.0% | |
| ! | AACTTTTTACTGAGAATGGG+TGG | + | chr2_2:5755229-5755248 | Msa0233410:intron | 35.0% |
| ! | ACTTTTTACTGAGAATGGGT+GGG | + | chr2_2:5755230-5755249 | Msa0233410:intron | 35.0% |
| TCTCAATTCTTGTATCAGCA+TGG | - | chr2_2:5755384-5755403 | None:intergenic | 35.0% | |
| CAGTTACCGAAATCTCTTAA+TGG | + | chr2_2:5755408-5755427 | Msa0233410:intron | 35.0% | |
| !! | GAAATCTCTTAATGGATTGC+TGG | + | chr2_2:5755416-5755435 | Msa0233410:intron | 35.0% |
| ! | ATGGATTGCTGGTCTATTAA+CGG | + | chr2_2:5755427-5755446 | Msa0233410:intron | 35.0% |
| ATCTGTAGATAACGAGTGTA+TGG | + | chr2_2:5755534-5755553 | Msa0233410:intron | 35.0% | |
| TCTGTAGATAACGAGTGTAT+GGG | + | chr2_2:5755535-5755554 | Msa0233410:intron | 35.0% | |
| TATGGAAGAGCTTATTAGCT+TGG | - | chr2_2:5755575-5755594 | None:intergenic | 35.0% | |
| AAGCTCTTCCATACTTTGTA+AGG | + | chr2_2:5755582-5755601 | Msa0233410:intron | 35.0% | |
| TTCCATACTTTGTAAGGTAC+TGG | + | chr2_2:5755588-5755607 | Msa0233410:intron | 35.0% | |
| TTCCAGTACCTTACAAAGTA+TGG | - | chr2_2:5755593-5755612 | None:intergenic | 35.0% | |
| !! | ACTTTGTAAGGTACTGGAAA+TGG | + | chr2_2:5755594-5755613 | Msa0233410:intron | 35.0% |
| AAATCTCTGCTTGATTCAGT+TGG | + | chr2_2:5755624-5755643 | Msa0233410:CDS | 35.0% | |
| TCAGTATATTGATGTTGGCA+TGG | + | chr2_2:5755852-5755871 | Msa0233410:CDS | 35.0% | |
| CAGTATATTGATGTTGGCAT+GGG | + | chr2_2:5755853-5755872 | Msa0233410:CDS | 35.0% | |
| AGTATATTGATGTTGGCATG+GGG | + | chr2_2:5755854-5755873 | Msa0233410:CDS | 35.0% | |
| TAGTTGTTAGAATTGTTCGC+GGG | + | chr2_2:5756170-5756189 | Msa0233410:intron | 35.0% | |
| ACATAAGGATTGGAGAGATA+AGG | - | chr2_2:5756213-5756232 | None:intergenic | 35.0% | |
| ! | ATAGAGTGGTTTGGAACATA+AGG | - | chr2_2:5756228-5756247 | None:intergenic | 35.0% |
| ATCTTCTAACACTTCAGTTC+TGG | + | chr2_2:5756266-5756285 | Msa0233410:intron | 35.0% | |
| TCTTCTAACACTTCAGTTCT+GGG | + | chr2_2:5756267-5756286 | Msa0233410:intron | 35.0% | |
| AAAAAATGTGTCACAAGCGA+AGG | - | chr2_2:5756779-5756798 | None:intergenic | 35.0% | |
| ATAGCCTCAAATTGAAGAGT+CGG | - | chr2_2:5756899-5756918 | None:intergenic | 35.0% | |
| CTCTAATAGTAGATTTGCCT+GGG | - | chr2_2:5756986-5757005 | None:intergenic | 35.0% | |
| CAGGCAAATCTACTATTAGA+GGG | + | chr2_2:5756985-5757004 | Msa0233410:CDS | 35.0% | |
| TCAAGGACCTGAAATAAACT+TGG | + | chr2_2:5757061-5757080 | Msa0233410:CDS | 35.0% | |
| TGAACCCAGACACTAATAAA+GGG | - | chr2_2:5757116-5757135 | None:intergenic | 35.0% | |
| TTCATCGCGATTTGTACATT+TGG | - | chr2_2:5757334-5757353 | None:intergenic | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr2_2:5757407-5757426 | Msa0233410:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr2_2:5757419-5757438 | Msa0233410:intron | 35.0% |
| ! | TGTTTTTCTCTTCTCCCTAA+TGG | + | chr2_2:5757726-5757745 | Msa0233410:intron | 35.0% |
| ! | GTTTTTCTCTTCTCCCTAAT+GGG | + | chr2_2:5757727-5757746 | Msa0233410:intron | 35.0% |
| ! | TTTTTCTCTTCTCCCTAATG+GGG | + | chr2_2:5757728-5757747 | Msa0233410:intron | 35.0% |
| AATGATGTCAGAGCTGAATA+AGG | + | chr2_2:5757854-5757873 | Msa0233410:CDS | 35.0% | |
| ATGATGTCAGAGCTGAATAA+GGG | + | chr2_2:5757855-5757874 | Msa0233410:CDS | 35.0% | |
| TATCAGGAAATCACACCTTT+AGG | - | chr2_2:5757911-5757930 | None:intergenic | 35.0% | |
| !! | ATTGAGCTTTGAAAGAGTCT+TGG | + | chr2_2:5757959-5757978 | Msa0233410:intron | 35.0% |
| TTGCAGATAACAGTGGATAA+AGG | + | chr2_2:5758181-5758200 | Msa0233410:CDS | 35.0% | |
| TTACCCCTATGTAATACTCT+TGG | + | chr2_2:5758218-5758237 | Msa0233410:exon | 35.0% | |
| ATATTTGATGCTGTACAGGA+AGG | - | chr2_2:5758324-5758343 | None:intergenic | 35.0% | |
| !! | CCAACAATTTGGTGTTACAA+AGG | - | chr2_2:5758363-5758382 | None:intergenic | 35.0% |
| CCTTTGTAACACCAAATTGT+TGG | + | chr2_2:5758360-5758379 | Msa0233410:three_prime_UTR | 35.0% | |
| TTGTAACACCAAATTGTTGG+CGG | + | chr2_2:5758363-5758382 | Msa0233410:three_prime_UTR | 35.0% | |
| !!! | TTTTCTTGAGTTGAGTGAGA+GGG | + | chr2_2:5758427-5758446 | Msa0233410:three_prime_UTR | 35.0% |
| GGGAAGTAAAATTGCAATGG+GGG | + | chr2_2:5754943-5754962 | Msa0233410:intron | 40.0% | |
| GCTTCTTCAAAGAGAGGATT+GGG | + | chr2_2:5755099-5755118 | Msa0233410:CDS | 40.0% | |
| ! | TGGTACTGGGATAAGGATTA+GGG | - | chr2_2:5755364-5755383 | None:intergenic | 40.0% |
| ! | ATGGTACTGGGATAAGGATT+AGG | - | chr2_2:5755365-5755384 | None:intergenic | 40.0% |
| TCTTGTATCAGCATGGTACT+GGG | - | chr2_2:5755377-5755396 | None:intergenic | 40.0% | |
| TTCTTGTATCAGCATGGTAC+TGG | - | chr2_2:5755378-5755397 | None:intergenic | 40.0% | |
| !! | TAGAGTCTGAAAAGTATCGG+TGG | + | chr2_2:5756002-5756021 | Msa0233410:CDS | 40.0% |
| !! | TCTGAAAAGTATCGGTGGAT+GGG | + | chr2_2:5756007-5756026 | Msa0233410:CDS | 40.0% |
| CTGAATATGAGCGTCCTAAA+TGG | + | chr2_2:5756101-5756120 | Msa0233410:intron | 40.0% | |
| ! | GTGGTTTGGAACATAAGGAT+TGG | - | chr2_2:5756223-5756242 | None:intergenic | 40.0% |
| AAAGGAGTGATAGAGTGGTT+TGG | - | chr2_2:5756237-5756256 | None:intergenic | 40.0% | |
| ATTAAGCAGATAGAAGCTGC+AGG | - | chr2_2:5756520-5756539 | None:intergenic | 40.0% | |
| GAGAAATACATCACGGCTTT+AGG | + | chr2_2:5756585-5756604 | Msa0233410:intron | 40.0% | |
| CCTCTAATAGTAGATTTGCC+TGG | - | chr2_2:5756987-5757006 | None:intergenic | 40.0% | |
| CCAGGCAAATCTACTATTAG+AGG | + | chr2_2:5756984-5757003 | Msa0233410:CDS | 40.0% | |
| TTAACATGTTCCCCTTCACT+TGG | - | chr2_2:5757023-5757042 | None:intergenic | 40.0% | |
| ATGGACCCTTTATTAGTGTC+TGG | + | chr2_2:5757108-5757127 | Msa0233410:CDS | 40.0% | |
| TGGACCCTTTATTAGTGTCT+GGG | + | chr2_2:5757109-5757128 | Msa0233410:CDS | 40.0% | |
| GTGAACCCAGACACTAATAA+AGG | - | chr2_2:5757117-5757136 | None:intergenic | 40.0% | |
| ACAAAACTGACCTTTGCATC+TGG | - | chr2_2:5757176-5757195 | None:intergenic | 40.0% | |
| ACAAATTGGTCCTCCTAATG+AGG | - | chr2_2:5757300-5757319 | None:intergenic | 40.0% | |
| !! | GTACTCTTTTAACTGCTACC+AGG | + | chr2_2:5757632-5757651 | Msa0233410:intron | 40.0% |
| !! | GATCAGTTTTAGCCCCATTA+GGG | - | chr2_2:5757743-5757762 | None:intergenic | 40.0% |
| !! | TGATCAGTTTTAGCCCCATT+AGG | - | chr2_2:5757744-5757763 | None:intergenic | 40.0% |
| ACCTTTAGGTACGTGACATA+CGG | - | chr2_2:5757897-5757916 | None:intergenic | 40.0% | |
| ! | CTTTGAAAGAGTCTTGGCAT+TGG | + | chr2_2:5757965-5757984 | Msa0233410:intron | 40.0% |
| AAAGGTGAAAGCTTTCAGCT+TGG | + | chr2_2:5758036-5758055 | Msa0233410:intron | 40.0% | |
| ! | CTATGATCCCTTCCTTTTCT+AGG | - | chr2_2:5758084-5758103 | None:intergenic | 40.0% |
| GAAGGGATCATAGATTCAGA+TGG | + | chr2_2:5758091-5758110 | Msa0233410:CDS | 40.0% | |
| GATCATAGATTCAGATGGTG+AGG | + | chr2_2:5758096-5758115 | Msa0233410:CDS | 40.0% | |
| ! | AGATTCAGATGGTGAGGTTT+TGG | + | chr2_2:5758102-5758121 | Msa0233410:CDS | 40.0% |
| TGTGTGTGTACAATATTGCG+TGG | - | chr2_2:5758272-5758291 | None:intergenic | 40.0% | |
| !!! | CTTTTCTTGAGTTGAGTGAG+AGG | + | chr2_2:5758426-5758445 | Msa0233410:three_prime_UTR | 40.0% |
| TTAGTCCTTCTGAGCTTCAG+CGG | - | chr2_2:5754903-5754922 | None:intergenic | 45.0% | |
| ! | AAACGGGCTTCTTCAAAGAG+AGG | + | chr2_2:5755093-5755112 | Msa0233410:CDS | 45.0% |
| GGCTTCTTCAAAGAGAGGAT+TGG | + | chr2_2:5755098-5755117 | Msa0233410:CDS | 45.0% | |
| ACCTGCAGGAACTATTCCAA+GGG | - | chr2_2:5755143-5755162 | None:intergenic | 45.0% | |
| AACCTGCAGGAACTATTCCA+AGG | - | chr2_2:5755144-5755163 | None:intergenic | 45.0% | |
| ! | ATCAGCATGGTACTGGGATA+AGG | - | chr2_2:5755371-5755390 | None:intergenic | 45.0% |
| !! | GTAAGGTACTGGAAATGGCA+TGG | + | chr2_2:5755599-5755618 | Msa0233410:intron | 45.0% |
| AATGATGGCAAGAACGGCAT+TGG | - | chr2_2:5755667-5755686 | None:intergenic | 45.0% | |
| ACCTCGAATGATGGCAAGAA+CGG | - | chr2_2:5755673-5755692 | None:intergenic | 45.0% | |
| TGGACTGAAACCTCGAATGA+TGG | - | chr2_2:5755682-5755701 | None:intergenic | 45.0% | |
| ATGTGGCTACCATCACACAA+GGG | + | chr2_2:5755816-5755835 | Msa0233410:CDS | 45.0% | |
| CATTGGCAGTCTCCAATCTA+TGG | - | chr2_2:5755892-5755911 | None:intergenic | 45.0% | |
| !! | GTCTGAAAAGTATCGGTGGA+TGG | + | chr2_2:5756006-5756025 | Msa0233410:CDS | 45.0% |
| GCAACAAAGGAGTGATAGAG+TGG | - | chr2_2:5756242-5756261 | None:intergenic | 45.0% | |
| CAGCAGGAAAGCAGTGAATA+AGG | - | chr2_2:5756865-5756884 | None:intergenic | 45.0% | |
| ATTCACTGCTTTCCTGCTGT+AGG | + | chr2_2:5756866-5756885 | Msa0233410:intron | 45.0% | |
| !! | TCTGCCGACTCTTCAATTTG+AGG | + | chr2_2:5756892-5756911 | Msa0233410:CDS | 45.0% |
| ! | TTTCTTTTGTGCCTGCACCT+GGG | + | chr2_2:5756931-5756950 | Msa0233410:CDS | 45.0% |
| AACAGTAGCGATCCAAGTGA+AGG | + | chr2_2:5757008-5757027 | Msa0233410:CDS | 45.0% | |
| ACAGTAGCGATCCAAGTGAA+GGG | + | chr2_2:5757009-5757028 | Msa0233410:CDS | 45.0% | |
| TCTGGGTTCACAATGTACCT+TGG | + | chr2_2:5757126-5757145 | Msa0233410:CDS | 45.0% | |
| CTGGGTTCACAATGTACCTT+GGG | + | chr2_2:5757127-5757146 | Msa0233410:CDS | 45.0% | |
| TGGGTTCACAATGTACCTTG+GGG | + | chr2_2:5757128-5757147 | Msa0233410:CDS | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | - | chr2_2:5757489-5757508 | None:intergenic | 45.0% | |
| TGGTAAATGCAGTTCTCCGA+CGG | + | chr2_2:5757780-5757799 | Msa0233410:intron | 45.0% | |
| GATCAAGTCCAGATAACCGT+CGG | - | chr2_2:5757799-5757818 | None:intergenic | 45.0% | |
| ATGTCAGAGCTGAATAAGGG+AGG | + | chr2_2:5757858-5757877 | Msa0233410:CDS | 45.0% | |
| TCCGTATGTCACGTACCTAA+AGG | + | chr2_2:5757893-5757912 | Msa0233410:CDS | 45.0% | |
| AAAGCTTTCAGCTTGGAACC+TGG | + | chr2_2:5758043-5758062 | Msa0233410:CDS | 45.0% | |
| ACCAAGGACCTAGAAAAGGA+AGG | + | chr2_2:5758073-5758092 | Msa0233410:CDS | 45.0% | |
| CCAAGGACCTAGAAAAGGAA+GGG | + | chr2_2:5758074-5758093 | Msa0233410:CDS | 45.0% | |
| !! | ATGGTGAGGTTTTGGCAAGA+GGG | + | chr2_2:5758110-5758129 | Msa0233410:CDS | 45.0% |
| AACCTACAAGTGTGAGCAGA+AGG | + | chr2_2:5758138-5758157 | Msa0233410:CDS | 45.0% | |
| GTGTACAATATTGCGTGGTG+TGG | - | chr2_2:5758267-5758286 | None:intergenic | 45.0% | |
| !!! | TAAATTTTGAATTATTAATA+CGG | + | chr2_2:5758387-5758406 | Msa0233410:three_prime_UTR | 5.0% |
| TGATACCGCTGAAGCTCAGA+AGG | + | chr2_2:5754895-5754914 | Msa0233410:intron | 50.0% | |
| ACAGCAATAAAGACGCCCCT+TGG | + | chr2_2:5755124-5755143 | Msa0233410:CDS | 50.0% | |
| CCTGCAGGAACTATTCCAAG+GGG | - | chr2_2:5755142-5755161 | None:intergenic | 50.0% | |
| ! | CCACATCAAGCTGTCGCTTA+TGG | - | chr2_2:5755802-5755821 | None:intergenic | 50.0% |
| CCATAAGCGACAGCTTGATG+TGG | + | chr2_2:5755799-5755818 | Msa0233410:CDS | 50.0% | |
| GATGTGGCTACCATCACACA+AGG | + | chr2_2:5755815-5755834 | Msa0233410:CDS | 50.0% | |
| TGTGGCTACCATCACACAAG+GGG | + | chr2_2:5755817-5755836 | Msa0233410:CDS | 50.0% | |
| ! | TCTGGTTTCCCCTTGTGTGA+TGG | - | chr2_2:5755828-5755847 | None:intergenic | 50.0% |
| ! | GTTTCTTTTGTGCCTGCACC+TGG | + | chr2_2:5756930-5756949 | Msa0233410:CDS | 50.0% |
| TAAGACTCAAACCCAGGTGC+AGG | - | chr2_2:5756945-5756964 | None:intergenic | 50.0% | |
| GCACCTGGGTTTGAGTCTTA+CGG | + | chr2_2:5756945-5756964 | Msa0233410:CDS | 50.0% | |
| CACCTGGGTTTGAGTCTTAC+GGG | + | chr2_2:5756946-5756965 | Msa0233410:CDS | 50.0% | |
| ACCTGGGTTTGAGTCTTACG+GGG | + | chr2_2:5756947-5756966 | Msa0233410:CDS | 50.0% | |
| AGATTTGCCTGGGTAACTGC+TGG | - | chr2_2:5756976-5756995 | None:intergenic | 50.0% | |
| CAGTAGCGATCCAAGTGAAG+GGG | + | chr2_2:5757010-5757029 | Msa0233410:CDS | 50.0% | |
| ATTGTGTCTTCAGCACCCCA+AGG | - | chr2_2:5757146-5757165 | None:intergenic | 50.0% | |
| !! | TTGGGGTGCTGAAGACACAA+TGG | + | chr2_2:5757145-5757164 | Msa0233410:CDS | 50.0% |
| AATGGCAGCACCAGATGCAA+AGG | + | chr2_2:5757163-5757182 | Msa0233410:CDS | 50.0% | |
| TCCCAATTGCTTCCGTGACT+AGG | + | chr2_2:5757270-5757289 | Msa0233410:intron | 50.0% | |
| CCCTAGTCACGGAAGCAATT+GGG | - | chr2_2:5757274-5757293 | None:intergenic | 50.0% | |
| CCCAATTGCTTCCGTGACTA+GGG | + | chr2_2:5757271-5757290 | Msa0233410:intron | 50.0% | |
| ACCCTAGTCACGGAAGCAAT+TGG | - | chr2_2:5757275-5757294 | None:intergenic | 50.0% | |
| AATTGCTTCCGTGACTAGGG+TGG | + | chr2_2:5757274-5757293 | Msa0233410:intron | 50.0% | |
| TAATGAGGCCACCCTAGTCA+CGG | - | chr2_2:5757285-5757304 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2_2:5757484-5757503 | None:intergenic | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | - | chr2_2:5757488-5757507 | None:intergenic | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | - | chr2_2:5757490-5757509 | None:intergenic | 50.0% | |
| ACGCACCAAGGACCTAGAAA+AGG | + | chr2_2:5758069-5758088 | Msa0233410:CDS | 50.0% | |
| ! | CCCTTCCTTTTCTAGGTCCT+TGG | - | chr2_2:5758077-5758096 | None:intergenic | 50.0% |
| !! | GATGGTGAGGTTTTGGCAAG+AGG | + | chr2_2:5758109-5758128 | Msa0233410:CDS | 50.0% |
| AGCCTTCTGCTCACACTTGT+AGG | - | chr2_2:5758143-5758162 | None:intergenic | 50.0% | |
| ! | GTGTGAGCAGAAGGCTTTGA+TGG | + | chr2_2:5758147-5758166 | Msa0233410:CDS | 50.0% |
| CCCCTTGGAATAGTTCCTGC+AGG | + | chr2_2:5755139-5755158 | Msa0233410:CDS | 55.0% | |
| !! | ACGGCATTGGCTATTGCGCA+AGG | - | chr2_2:5755654-5755673 | None:intergenic | 55.0% |
| GCCGTTCTTGCCATCATTCG+AGG | + | chr2_2:5755669-5755688 | Msa0233410:CDS | 55.0% | |
| TCCCCGTAAGACTCAAACCC+AGG | - | chr2_2:5756951-5756970 | None:intergenic | 55.0% | |
| GTGACTAGGGTGGCCTCATT+AGG | + | chr2_2:5757284-5757303 | Msa0233410:intron | 55.0% | |
| ACTAGGGTGGCCTCATTAGG+AGG | + | chr2_2:5757287-5757306 | Msa0233410:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr2_2:5757476-5757495 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr2_2:5757475-5757494 | Msa0233410:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr2_2:5757476-5757495 | Msa0233410:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2_2:5757482-5757501 | Msa0233410:intron | 55.0% | |
| GCAGTTCTCCGACGGTTATC+TGG | + | chr2_2:5757788-5757807 | Msa0233410:intron | 55.0% | |
| !! | GAGGTTTTGGCAAGAGGGAG+AGG | + | chr2_2:5758115-5758134 | Msa0233410:CDS | 55.0% |
| GGAACCTGGTACACGCACCA+AGG | + | chr2_2:5758057-5758076 | Msa0233410:CDS | 60.0% | |
| ! | AGGTCCTTGGTGCGTGTACC+AGG | - | chr2_2:5758064-5758083 | None:intergenic | 60.0% |
| GTCGGCAGACAGCCTACAGC+AGG | - | chr2_2:5756881-5756900 | None:intergenic | 65.0% | |
| GGGGAGTCCAGCAGTTACCC+AGG | + | chr2_2:5756966-5756985 | Msa0233410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5754884 | 5758500 | 5754884 | ID=Msa0233410;Name=Msa0233410 |
| chr2_2 | mRNA | 5754884 | 5758500 | 5754884 | ID=Msa0233410-mRNA-1;Parent=Msa0233410;Name=Msa0233410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.71|0.5|0.87|0.85|0.87|8|269|308 |
| chr2_2 | exon | 5754884 | 5754889 | 5754884 | ID=Msa0233410-mRNA-1:exon:2499;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5755088 | 5755160 | 5755088 | ID=Msa0233410-mRNA-1:exon:2500;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5755604 | 5755690 | 5755604 | ID=Msa0233410-mRNA-1:exon:2501;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5755798 | 5755875 | 5755798 | ID=Msa0233410-mRNA-1:exon:2502;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5755981 | 5756051 | 5755981 | ID=Msa0233410-mRNA-1:exon:2503;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5756888 | 5757184 | 5756888 | ID=Msa0233410-mRNA-1:exon:2504;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5757792 | 5757914 | 5757792 | ID=Msa0233410-mRNA-1:exon:2505;Parent=Msa0233410-mRNA-1 |
| chr2_2 | exon | 5758040 | 5758500 | 5758040 | ID=Msa0233410-mRNA-1:exon:2506;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5754884 | 5754889 | 5754884 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5755088 | 5755160 | 5755088 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5755604 | 5755690 | 5755604 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5755798 | 5755875 | 5755798 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5755981 | 5756051 | 5755981 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5756888 | 5757184 | 5756888 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5757792 | 5757914 | 5757792 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | CDS | 5758040 | 5758231 | 5758040 | ID=Msa0233410-mRNA-1:cds;Parent=Msa0233410-mRNA-1 |
| chr2_2 | three_prime_UTR | 5758232 | 5758500 | 5758232 | ID=Msa0233410-mRNA-1:three_prime_utr;Parent=Msa0233410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
