AlfalfaGEDB | Msa0191370

M. sativa cultivar zhongmu-4 / Msa0191370

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191370	XP_039686171.1	96.456	903	19	4	3	904	11	901	0.0	1777

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191370	sp\|Q0D5G4\|Y7633_ORYSJ	49.282	905	337	27	24	841	83	952	0.0	756

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191370	A0A396J3B3	96.013	903	19	6	3	904	11	897	0.0	1759

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TFs/TRs:

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Gene ID	Type	Classification
Msa0191370	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0191370	Msa0191420	0.808482	3.030924e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191370	MtrunA17_Chr2g0281191	96.013	903	19	6	3	904	11	897	0.0	1759
Msa0191370	MtrunA17_Chr3g0107701	41.726	846	401	21	37	824	17	828	0.0	558
Msa0191370	MtrunA17_Chr4g0012861	51.701	588	214	13	314	850	270	838	0.0	551
Msa0191370	MtrunA17_Chr4g0012861	38.129	139	60	3	22	144	4	132	5.21e-23	105
Msa0191370	MtrunA17_Chr5g0432721	39.964	548	230	12	320	824	283	774	9.04e-104	340
Msa0191370	MtrunA17_Chr5g0432721	44.898	98	43	2	24	120	6	93	1.92e-19	94.0
Msa0191370	MtrunA17_Chr7g0244871	67.391	92	30	0	352	443	6	97	8.22e-40	142
Msa0191370	MtrunA17_Chr7g0251891	39.394	132	71	3	358	485	16	142	3.48e-20	89.7
Msa0191370	MtrunA17_Chr7g0237841	41.379	87	50	1	358	443	623	709	2.46e-15	80.5
Msa0191370	MtrunA17_Chr8g0345771	38.182	110	60	4	358	461	171	278	3.70e-14	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191370	AT4G32010.2	41.972	791	365	16	20	790	3	719	0.0	561
Msa0191370	AT4G32010.1	41.761	795	365	17	20	790	3	723	0.0	556
Msa0191370	AT2G30470.1	49.102	501	234	5	307	791	243	738	6.13e-144	446
Msa0191370	AT2G30470.1	48.485	99	40	2	22	119	9	97	6.76e-21	99.0
Msa0191370	AT4G21550.3	40.426	564	274	14	22	575	15	526	1.15e-119	375
Msa0191370	AT4G21550.1	40.614	586	282	15	24	599	17	546	5.46e-116	370
Msa0191370	AT4G21550.1	47.020	151	51	4	681	831	541	662	1.77e-21	100
Msa0191370	AT4G21550.2	40.146	548	266	14	24	561	17	512	4.91e-114	359
Msa0191370	AT3G26790.1	41.346	104	60	1	358	460	91	194	2.81e-19	90.1
Msa0191370	AT3G24650.1	35.172	145	76	4	321	457	538	672	6.96e-16	82.8

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Find 261 sgRNAs with CRISPR-Local

Find 817 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGAGAATGCACATC+TGG	0.456237	2_1:-6977350	None:intergenic
AAAAGTTGGAGTCAGTTAGC+TGG	0.568196	2_1:+6977260	Msa0191370:CDS
AAACACCCACGACATAGACC+CGG	0.669434	2_1:+6983341	Msa0191370:CDS
AAAGGTTGGAGACTTCGCAC+TGG	0.641834	2_1:+6974275	Msa0191370:CDS
AAATCCTTTGCCATCCGATC+AGG	0.452416	2_1:+6980350	Msa0191370:CDS
AACCCTTCAGGCTGAGAAAT+TGG	0.301947	2_1:-6979272	None:intergenic
AACTGAAGAAGAAGAAGCCA+TGG	0.586971	2_1:-6974162	None:intergenic
AACTGCATGGACTGTATGCA+CGG	0.670080	2_1:-6979395	None:intergenic
AACTGCTTGCCTAGATGAGG+TGG	0.570136	2_1:-6977795	None:intergenic
AAGTAACACCTTTGTGTTGT+TGG	0.387030	2_1:+6976308	Msa0191370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTTGAAGTGAGAGAAAT+GGG	-	chr2_1:6974028-6974047	None:intergenic	30.0%
GATGAAATGAAACTAACAAG+AGG	+	chr2_1:6974979-6974998	Msa0191370:intron	30.0%
AATGAAACTAACAAGAGGAA+AGG	+	chr2_1:6974984-6975003	Msa0191370:intron	30.0%
ACAAACTGTTACAATTCATG+GGG	-	chr2_1:6975046-6975065	None:intergenic	30.0%
ACTACTTAAGCTATATCTCT+AGG	+	chr2_1:6975302-6975321	Msa0191370:intron	30.0%
GATAATGAATGGAACTATGT+TGG	-	chr2_1:6975504-6975523	None:intergenic	30.0%
ACATAGTTCCATTCATTATC+TGG	+	chr2_1:6975504-6975523	Msa0191370:intron	30.0%
TAACAAACAGTGAACACAAA+TGG	-	chr2_1:6975843-6975862	None:intergenic	30.0%
TGTATATCATGAATGTCTTG+TGG	+	chr2_1:6976452-6976471	Msa0191370:intron	30.0%
GTATATCATGAATGTCTTGT+GGG	+	chr2_1:6976453-6976472	Msa0191370:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	6973998	6984404	6973998	ID=Msa0191370;Name=Msa0191370
chr2_1	mRNA	6973998	6984404	6973998	ID=Msa0191370-mRNA-1;Parent=Msa0191370;Name=Msa0191370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=166\|0.84\|0.78\|1\|0.92\|0.92\|14\|425\|904
chr2_1	exon	6973998	6974327	6973998	ID=Msa0191370-mRNA-1:exon:3151;Parent=Msa0191370-mRNA-1
chr2_1	exon	6976037	6976148	6976037	ID=Msa0191370-mRNA-1:exon:3152;Parent=Msa0191370-mRNA-1
chr2_1	exon	6976282	6976380	6976282	ID=Msa0191370-mRNA-1:exon:3153;Parent=Msa0191370-mRNA-1
chr2_1	exon	6977185	6977518	6977185	ID=Msa0191370-mRNA-1:exon:3154;Parent=Msa0191370-mRNA-1
chr2_1	exon	6977628	6977967	6977628	ID=Msa0191370-mRNA-1:exon:3155;Parent=Msa0191370-mRNA-1
chr2_1	exon	6978090	6978186	6978090	ID=Msa0191370-mRNA-1:exon:3156;Parent=Msa0191370-mRNA-1
chr2_1	exon	6979260	6979434	6979260	ID=Msa0191370-mRNA-1:exon:3157;Parent=Msa0191370-mRNA-1
chr2_1	exon	6980292	6980371	6980292	ID=Msa0191370-mRNA-1:exon:3158;Parent=Msa0191370-mRNA-1
chr2_1	exon	6980949	6980993	6980949	ID=Msa0191370-mRNA-1:exon:3159;Parent=Msa0191370-mRNA-1
chr2_1	exon	6981080	6981343	6981080	ID=Msa0191370-mRNA-1:exon:3160;Parent=Msa0191370-mRNA-1
chr2_1	exon	6981970	6982019	6981970	ID=Msa0191370-mRNA-1:exon:3161;Parent=Msa0191370-mRNA-1
chr2_1	exon	6982625	6982738	6982625	ID=Msa0191370-mRNA-1:exon:3162;Parent=Msa0191370-mRNA-1
chr2_1	exon	6983015	6983085	6983015	ID=Msa0191370-mRNA-1:exon:3163;Parent=Msa0191370-mRNA-1
chr2_1	exon	6983210	6984404	6983210	ID=Msa0191370-mRNA-1:exon:3164;Parent=Msa0191370-mRNA-1
chr2_1	five_prime_UTR	6973998	6974163	6973998	ID=Msa0191370-mRNA-1:five_prime_utr;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6974164	6974327	6974164	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6976037	6976148	6976037	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6976282	6976380	6976282	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6977185	6977518	6977185	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6977628	6977967	6977628	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6978090	6978186	6978090	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6979260	6979434	6979260	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6980292	6980371	6980292	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6980949	6980993	6980949	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6981080	6981343	6981080	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6981970	6982019	6981970	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6982625	6982738	6982625	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6983015	6983085	6983015	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	CDS	6983210	6983979	6983210	ID=Msa0191370-mRNA-1:cds;Parent=Msa0191370-mRNA-1
chr2_1	three_prime_UTR	6983980	6984404	6983980	ID=Msa0191370-mRNA-1:three_prime_utr;Parent=Msa0191370-mRNA-1

Gene Sequence

>Msa0191370

ATGGCTTCTTCTTCTTCAGTTCCATCTTCTTCTTCTTCTTCGACTATTTGTTCTTCAACCTTAAAACGATGCTTCAATTCTGACTGTAAAGACTTGAGGTCTACTACTAAGAAAGGTTGGAGACTTCGCACTGGTGACCTAGCTCAACTCTGTGATCGATGCGGTAAAAAATTGATTGTTTCTGTGATACTTAGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTCCACTCAAACGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGAAAGCGAATTCACTGTGGGTGTATTGTTTCAAGTAACACCTTTGTGTTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAATGTTATTCTGCCATCTAACCTGCCGTGGCCACAATCTTTATCTCTTACAAATCGTTTATCGGAGAGATATAGAGACATGTCTGGCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTCTGTTCAATTCAGCTTCTTCATCCGACCAGCCTCCAGATGTGCATTCTCTAGTTTTATCAAATAACTTTGACAAAATATATGGCAATGAAAGGTTGCCCCCCTCATCATTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGCTAATTGGAATGTCAAACTGGGTTCAAGGGACATGTTGCTTATGAACGGTAATACAGGAATGAGGAATGAGGACAAATCAGGTCCGTGTTTAAATATGTGCCAACAGCCTCATACTCTAAAGGAAGATTCATCTTCTCAACCGTTTGGTTTATCTGTACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAATTCATCTACAACAAACTCCACCTCATCTAGGCAAGCAGTTTAGTGGCACTATGCATTTACCTCTTGACTCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAGTTGTTGCCACGGTATTGGCCCAGGTGTACTGAATTGGAGCTACAGCAAATATCTGTCGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACTTTGAGTGCCAGTGATGCTGGGCGAATTGGGCGCTTGGTACTACCCAAAAAATGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCTCTTAAAATCCTCGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCAAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCGTGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGTTGGAGCCTGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATCCTTTGCCATCCGATCAGGATAATGAAGCTAATAAGACTGGAAACGGATTTTCTGCTCACGAAGTTGAATTGGCTGATCCTAGTTCCTGGTCAAATGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAAAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAATGAGGATATAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTTCGTCCCCCTCCTAATCATGTCCCAAGCATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCGGTGCTTGGGAAGCCATCTATTTTCACTAGTGATAATATGGGTGAAAGGATTCAGTATACTCAATGTGAACATTGTCTGAAGTGGCGCAAATTGCCAGCATGTGCACTTCTTCCAGCAAAATGGACATGTTCAGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTTACAACAGAACAACTTGAGAATTTGTTACCCCCTTGTAATTCAGCAGTTTCCAAGAAAATGAAGGCCACTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCAATCCTGGGGGAAGGGGAGGCTCTCCCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCCGGCTGCTCTTGCATTGTTTGCATCCAGCCGCCTAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAGCGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAGTCCGAAAAAGAAGCAGAAACAACACGTAAAAAGCAGCAGCAACAGAATTCCCAGCAACTGCCTTCATCTGAAATTTTGCTTGACGATGATTCCTTGCATAATAGTAATACGGGTGATAGTAGCCCAACCATGAACAAGGAGGGTAATGATGGTTCTGATGATGATCCTCACCGGATAAAATCATCCGTGTCTCCATTTAAAGGCCAAATTGATCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCGCCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCACGATGCTGCTGCTGAAATGTATCTCAAGCAGCAGCAGACTTTGTTGAACTCTGGTACTGGAGATTCATCAGGTAGTCAGTCACAGCAGGTAGGAGATGTTGTGAGGGAAGTGAAGCTTAGCAACGGTGTTATTCATGGTAGCAGTAGTCATAATGCTGATAAGGAACATGCCCAGTCTTTGTCTATGAACGTGTGA

Protein sequence

>Msa0191370

MASSSSVPSSSSSSTICSSTLKRCFNSDCKDLRSTTKKGWRLRTGDLAQLCDRCGKKLIVSVILSSAFEEGRFCDIFHSNASGWRNCETCRKRIHCGCIVSSNTFVLLDPGGIECFTCARKNVILPSNLPWPQSLSLTNRLSERYRDMSGKSWSQLAGSGPVPWKQAPSLFNSASSSDQPPDVHSLVLSNNFDKIYGNERLPPSSLEKKNEDLSGISANWNVKLGSRDMLLMNGNTGMRNEDKSGPCLNMCQQPHTLKEDSSSQPFGLSVPYSSPNERNGQIGVTGIHLQQTPPHLGKQFSGTMHLPLDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTELELQQISVDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNPLPSDQDNEANKTGNGFSAHEVELADPSSWSNVDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPSIFTSDNMGERIQYTQCEHCLKWRKLPACALLPAKWTCSDNSWDPERSSCSAAQELTTEQLENLLPPCNSAVSKKMKATKQDPDHAEALEGLDTLANLAILGEGEALPSSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQNSQQLPSSEILLDDDSLHNSNTGDSSPTMNKEGNDGSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDAAAEMYLKQQQTLLNSGTGDSSGSQSQQVGDVVREVKLSNGVIHGSSSHNADKEHAQSLSMNV*