AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0192190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192190 MtrunA17_Chr2g0282511 87.654 324 22 5 1 321 1 309 6.97e-163 456
Msa0192190 MtrunA17_Chr4g0047001 45.078 386 120 18 14 321 13 384 7.41e-62 201
Msa0192190 MtrunA17_Chr4g0031411 43.931 173 69 5 41 210 72 219 5.13e-33 124
Msa0192190 MtrunA17_Chr2g0328021 45.113 133 71 2 10 142 29 159 3.99e-32 121
Msa0192190 MtrunA17_Chr4g0010151 69.231 91 25 2 41 128 79 169 4.61e-32 122
Msa0192190 MtrunA17_Chr8g0374251 71.429 70 20 0 39 108 63 132 1.39e-31 120
Msa0192190 MtrunA17_Chr8g0374111 67.647 68 22 0 40 107 25 92 1.00e-30 115
Msa0192190 MtrunA17_Chr4g0030051 74.242 66 17 0 31 96 28 93 1.42e-30 117
Msa0192190 MtrunA17_Chr1g0177251 48.800 125 59 2 41 163 9 130 1.56e-30 117
Msa0192190 MtrunA17_Chr1g0188851 55.670 97 32 2 15 100 3 99 2.24e-30 116
Msa0192190 MtrunA17_Chr2g0326001 71.642 67 19 0 30 96 26 92 4.31e-30 115
Msa0192190 MtrunA17_Chr7g0223311 68.571 70 22 0 37 106 70 139 4.42e-30 117
Msa0192190 MtrunA17_Chr8g0367161 67.647 68 22 0 35 102 23 90 1.08e-29 115
Msa0192190 MtrunA17_Chr8g0346551 55.435 92 30 1 31 122 11 91 1.17e-29 114
Msa0192190 MtrunA17_Chr8g0341671 72.727 66 16 1 40 105 16 79 1.83e-29 112
Msa0192190 MtrunA17_Chr3g0127201 71.014 69 17 1 34 102 17 82 2.23e-29 114
Msa0192190 MtrunA17_Chr7g0237921 80.702 57 11 0 40 96 72 128 4.16e-29 114
Msa0192190 MtrunA17_Chr2g0282051 64.865 74 25 1 27 100 29 101 4.33e-29 112
Msa0192190 MtrunA17_Chr3g0126201 62.338 77 29 0 29 105 36 112 1.90e-28 112
Msa0192190 MtrunA17_Chr5g0411951 79.630 54 11 0 41 94 40 93 2.84e-28 112
Msa0192190 MtrunA17_Chr2g0282441 75.410 61 15 0 35 95 16 76 4.64e-28 111
Msa0192190 MtrunA17_Chr3g0117601 72.131 61 17 0 34 94 51 111 8.81e-28 110
Msa0192190 MtrunA17_Chr2g0308011 86.000 50 7 0 43 92 36 85 1.44e-27 107
Msa0192190 MtrunA17_Chr4g0047761 70.270 74 21 1 28 101 56 128 1.55e-27 109
Msa0192190 MtrunA17_Chr4g0061761 81.132 53 10 0 42 94 38 90 1.62e-27 109
Msa0192190 MtrunA17_Chr6g0453321 54.321 81 33 1 20 96 108 188 1.59e-25 106
Msa0192190 MtrunA17_Chr3g0092111 62.121 66 25 0 38 103 130 195 2.10e-25 105
Msa0192190 MtrunA17_Chr7g0254161 49.495 99 49 1 35 133 92 189 9.18e-25 103
Msa0192190 MtrunA17_Chr2g0283811 59.677 62 25 0 34 95 37 98 1.49e-24 97.4
Msa0192190 MtrunA17_Chr7g0217581 57.895 76 25 1 30 98 211 286 2.18e-24 103
Msa0192190 MtrunA17_Chr4g0042481 53.333 75 35 0 34 108 112 186 2.53e-24 102
Msa0192190 MtrunA17_Chr5g0417561 43.077 130 73 1 13 141 88 217 2.71e-24 101
Msa0192190 MtrunA17_Chr8g0355261 48.810 84 39 1 34 117 108 187 3.38e-24 102
Msa0192190 MtrunA17_Chr6g0460721 40.000 130 77 1 24 153 69 197 6.61e-24 99.8
Msa0192190 MtrunA17_Chr6g0460731 50.685 73 36 0 24 96 76 148 4.56e-23 98.2
Msa0192190 MtrunA17_Chr5g0417571 50.000 82 39 1 15 96 111 190 6.43e-23 97.1
Msa0192190 MtrunA17_Chr5g0417551 50.000 84 42 0 13 96 96 179 2.60e-22 95.9
Msa0192190 MtrunA17_Chr5g0417601 50.633 79 37 1 21 99 119 195 7.09e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192190 AT1G28310.1 41.503 306 130 12 44 321 27 311 1.90e-43 152
Msa0192190 AT1G28310.2 41.503 306 130 12 44 321 51 335 2.59e-43 152
Msa0192190 AT3G55370.1 53.333 105 49 0 4 108 36 140 3.01e-34 128
Msa0192190 AT3G55370.3 53.333 105 49 0 4 108 81 185 3.84e-34 128
Msa0192190 AT3G55370.2 53.333 105 49 0 4 108 36 140 5.20e-34 128
Msa0192190 AT1G51700.1 44.025 159 81 5 31 186 21 174 1.47e-33 122
Msa0192190 AT3G45610.1 41.463 164 75 5 41 202 37 181 5.56e-31 117
Msa0192190 AT5G60200.1 42.073 164 65 4 38 201 49 182 6.43e-31 117
Msa0192190 AT1G07640.2 60.000 85 26 1 28 104 53 137 7.58e-31 119
Msa0192190 AT1G07640.1 55.140 107 40 2 44 148 21 121 7.73e-31 117
Msa0192190 AT2G28810.2 81.034 58 11 0 38 95 71 128 8.98e-31 118
Msa0192190 AT1G07640.3 60.000 85 26 1 28 104 61 145 1.09e-30 119
Msa0192190 AT2G28810.1 81.034 58 11 0 38 95 88 145 1.19e-30 118
Msa0192190 AT3G50410.1 74.603 63 16 0 40 102 26 88 1.85e-30 116
Msa0192190 AT5G65590.1 60.000 85 34 0 19 103 16 100 1.89e-30 117
Msa0192190 AT2G37590.1 65.753 73 25 0 28 100 73 145 4.32e-30 117
Msa0192190 AT5G02460.1 87.037 54 7 0 43 96 94 147 2.11e-29 116
Msa0192190 AT1G21340.1 40.782 179 67 7 16 160 8 181 2.74e-29 113
Msa0192190 AT3G21270.1 78.947 57 12 0 44 100 29 85 3.73e-29 111
Msa0192190 AT2G28510.1 39.444 180 83 5 42 213 46 207 1.04e-28 112
Msa0192190 AT4G38000.1 71.875 64 18 0 34 97 31 94 2.45e-28 110
Msa0192190 AT5G66940.1 54.255 94 39 2 27 118 13 104 2.62e-28 109
Msa0192190 AT5G60850.1 73.770 61 16 0 40 100 47 107 6.97e-28 110
Msa0192190 AT5G62940.1 69.355 62 19 0 33 94 62 123 1.23e-26 108
Msa0192190 AT3G61850.2 66.667 66 19 1 37 102 55 117 1.29e-26 106
Msa0192190 AT3G61850.3 66.667 66 19 1 37 102 55 117 1.29e-26 106
Msa0192190 AT3G61850.5 66.667 66 19 1 37 102 55 117 1.72e-26 107
Msa0192190 AT3G61850.1 70.968 62 15 1 41 102 71 129 1.78e-26 106
Msa0192190 AT3G52440.1 74.194 62 14 1 46 105 27 88 2.29e-26 105
Msa0192190 AT3G61850.4 70.968 62 15 1 41 102 71 129 2.29e-26 106
Msa0192190 AT3G52440.2 74.194 62 14 1 46 105 46 107 3.20e-26 105
Msa0192190 AT4G00940.1 61.644 73 24 1 24 96 52 120 8.18e-26 104
Msa0192190 AT4G00940.3 61.644 73 24 1 24 96 52 120 8.18e-26 104
Msa0192190 AT4G00940.2 61.644 73 24 1 24 96 52 120 8.18e-26 104
Msa0192190 AT2G46590.1 71.930 57 16 0 35 91 59 115 8.77e-26 105
Msa0192190 AT2G46590.2 71.930 57 16 0 35 91 71 127 1.03e-25 105
Msa0192190 AT1G64620.1 69.492 59 18 0 34 92 39 97 1.76e-25 105
Msa0192190 AT3G47500.1 71.930 57 16 0 42 98 108 164 2.37e-25 105
Msa0192190 AT5G62430.1 62.903 62 23 0 38 99 48 109 7.09e-25 102
Msa0192190 AT5G39660.3 65.574 61 21 0 38 98 132 192 1.43e-24 103
Msa0192190 AT5G39660.1 65.574 61 21 0 38 98 132 192 1.43e-24 103
Msa0192190 AT5G39660.2 65.574 61 21 0 38 98 132 192 1.43e-24 103
Msa0192190 AT1G26790.1 47.573 103 52 2 20 122 88 188 3.04e-24 101
Msa0192190 AT1G47655.1 72.549 51 14 0 42 92 27 77 5.95e-24 97.8
Msa0192190 AT4G21050.1 76.000 50 12 0 46 95 26 75 1.43e-23 96.7
Msa0192190 AT1G29160.1 56.923 65 28 0 37 101 55 119 1.84e-23 95.5
Msa0192190 AT2G34140.1 56.923 65 28 0 37 101 51 115 2.12e-23 95.1
Msa0192190 AT4G24060.1 37.500 200 84 7 34 226 43 208 7.37e-23 97.4
Msa0192190 AT1G69570.1 56.716 67 29 0 38 104 126 192 9.10e-23 98.2
Msa0192190 AT4G21040.1 47.619 105 37 3 21 125 12 98 2.07e-22 94.0
Msa0192190 AT4G21080.1 42.857 105 47 2 21 125 12 103 1.82e-21 92.0
Msa0192190 AT4G21030.1 60.870 46 18 0 46 91 23 68 6.56e-13 67.0

Find 76 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCTTAGTTCAAGTTTA+AGG 0.109986 2_1:-7932442 Msa0192190:three_prime_UTR
GGGCTTGGAATTTAACAATT+TGG 0.140338 2_1:-7932653 Msa0192190:CDS
GCAAAGCTTGCAAACGTTAT+TGG 0.143992 2_1:-7933212 Msa0192190:CDS
ACTCTTCAAGGATTCTATTT+TGG 0.149882 2_1:-7933674 Msa0192190:five_prime_UTR
AGGACTAATATTATGATTTA+AGG 0.162696 2_1:+7933020 None:intergenic
CACCAGCTTCTTCACTTTAC+TGG 0.188996 2_1:-7932561 Msa0192190:CDS
GGCTTGGAATTTAACAATTT+GGG 0.228469 2_1:-7932652 Msa0192190:CDS
GTTTAAGGTTATCTTTAATT+TGG 0.229380 2_1:-7932427 Msa0192190:three_prime_UTR
AACGATCAAGCTTCTAATAT+TGG 0.247824 2_1:-7932505 Msa0192190:CDS
TGTTGTCTGTATACTCTTCA+AGG 0.308452 2_1:-7933686 Msa0192190:five_prime_UTR
AATAGATGATGTTAAGATAA+TGG 0.329856 2_1:-7933358 Msa0192190:CDS
GCTTCAAGGGTTTCAAATAT+AGG 0.337429 2_1:+7933727 None:intergenic
TGTATAACCATTATGATCAT+TGG 0.338919 2_1:+7932837 None:intergenic
GGACAAGAGGTGGTACTCTT+AGG 0.348242 2_1:-7933191 Msa0192190:CDS
CAGATGAATACCATTGGATT+AGG 0.360977 2_1:-7932889 Msa0192190:CDS
ACAATCTAACTGAGGTTTGC+TGG 0.378078 2_1:+7932179 None:intergenic
TCTAGAATCTCAACAAGTTC+AGG 0.387293 2_1:-7932928 Msa0192190:CDS
CATCATCAGCTATTGGTGTT+TGG 0.393178 2_1:-7932528 Msa0192190:CDS
ATAACCTTAAACTTGAACTA+AGG 0.401805 2_1:+7932438 None:intergenic
GATCATAATGGTTATACAAA+TGG 0.418978 2_1:-7932832 Msa0192190:CDS
ATTATGATCATTGGCTTCGC+TGG 0.424556 2_1:+7932846 None:intergenic
CTTAGGAATGTTCCTGTTGG+TGG 0.434008 2_1:-7933174 Msa0192190:CDS
GCAGTTGGTCACTAGCTTCA+AGG 0.440834 2_1:+7933713 None:intergenic
ACAGCATCATCATCAGCTAT+TGG 0.454258 2_1:-7932535 Msa0192190:CDS
TTGGGGAATGGAAGTGAGAA+AGG 0.465690 2_1:-7932634 Msa0192190:CDS
CTTCTGTAACCACCACCAAC+AGG 0.474357 2_1:+7933162 None:intergenic
GAATTTAACAATTTGGGGAA+TGG 0.481892 2_1:-7932646 Msa0192190:CDS
TAAGGTTGAATTTGAAGAAG+TGG 0.481982 2_1:+7933038 None:intergenic
CAACATAAATTCATGAATGA+TGG 0.486443 2_1:-7932691 Msa0192190:CDS
CAAGCTTTGCAGAAATGTCT+TGG 0.496012 2_1:+7933225 None:intergenic
CTGATTAGTGGTTGGAGGGA+TGG 0.496794 2_1:+7933614 None:intergenic
CAGCCTCAGATGAATACCAT+TGG 0.500398 2_1:-7932895 Msa0192190:CDS
AAAGGAATGAAGAAAGATGA+AGG 0.500974 2_1:-7932616 Msa0192190:CDS
GAAGAAAGATGAAGGAGAGA+TGG 0.502257 2_1:-7932608 Msa0192190:CDS
TGAGCTAGAGGAGAGTACTT+TGG 0.503240 2_1:-7932229 Msa0192190:three_prime_UTR
GGCATAACTGATGCATTACT+TGG 0.503446 2_1:+7932739 None:intergenic
GAGATATTGAACCTTGAGAA+TGG 0.505952 2_1:+7932949 None:intergenic
CAGTTGGTCACTAGCTTCAA+GGG 0.509480 2_1:+7933714 None:intergenic
AACCTGTGGCCACTGATTAG+TGG 0.512866 2_1:+7933602 None:intergenic
GGCCACTGATTAGTGGTTGG+AGG 0.514127 2_1:+7933609 None:intergenic
AGAAGAATTAGTAGTATCAA+TGG 0.516034 2_1:+7933086 None:intergenic
AGGAATGTTCCTGTTGGTGG+TGG 0.516563 2_1:-7933171 Msa0192190:CDS
TTGCTGGATGCAGCTTACAT+AGG 0.517627 2_1:+7932195 None:intergenic
AGCGAAGCCAATGATCATAA+TGG 0.521310 2_1:-7932844 Msa0192190:CDS
ATGTGAATCTTCCATTCTCA+AGG 0.533312 2_1:-7932960 Msa0192190:CDS
TGAAGAAGTGGTGTTTGATG+TGG 0.539434 2_1:+7933050 None:intergenic
CTTGATAAACCATAAAACAT+AGG 0.540160 2_1:+7933000 None:intergenic
GGCTTCGCTGGACGTAAACC+CGG 0.542853 2_1:+7932858 None:intergenic
GCTTGGAATTTAACAATTTG+GGG 0.544684 2_1:-7932651 Msa0192190:CDS
ATTAGTAGTATCAATGGTGG+AGG 0.545112 2_1:+7933092 None:intergenic
AGAATTAGTAGTATCAATGG+TGG 0.550623 2_1:+7933089 None:intergenic
GCCACTGATTAGTGGTTGGA+GGG 0.566821 2_1:+7933610 None:intergenic
GAAAGGTAAAGGTGAGCTAG+AGG 0.570168 2_1:-7932241 Msa0192190:three_prime_UTR
TACAGACAACAAAGAGCAGT+TGG 0.576785 2_1:+7933698 None:intergenic
TGCAAACGTTATTGGACAAG+AGG 0.578125 2_1:-7933204 Msa0192190:CDS
ACTCTTAGGAATGTTCCTGT+TGG 0.582456 2_1:-7933177 Msa0192190:CDS
AACCACTAATCAGTGGCCAC+AGG 0.599050 2_1:-7933604 Msa0192190:intron
TTCCAGTAAAGTGAAGAAGC+TGG 0.599918 2_1:+7932559 None:intergenic
GTGGTGTTTGATGTGGAACT+AGG 0.603982 2_1:+7933057 None:intergenic
TGAAGGAGAGATGGAACATG+TGG 0.611078 2_1:-7932599 Msa0192190:CDS
TTTCAAATATAGGAGAGTGA+GGG 0.620308 2_1:+7933737 None:intergenic
GTTTCAAATATAGGAGAGTG+AGG 0.621310 2_1:+7933736 None:intergenic
AGAGCAGAACTCAACAGAGA+AGG 0.622062 2_1:+7932718 None:intergenic
TTCAAATATAGGAGAGTGAG+GGG 0.622411 2_1:+7933738 None:intergenic
AATCCAATGGTATTCATCTG+AGG 0.625381 2_1:+7932892 None:intergenic
GGATGAAAAGCCTAATCCAA+TGG 0.636487 2_1:+7932879 None:intergenic
AAACGTTATTGGACAAGAGG+TGG 0.639210 2_1:-7933201 Msa0192190:CDS
CAGTAAAGTGAAGAAGCTGG+TGG 0.648703 2_1:+7932562 None:intergenic
TCCCTCCAACCACTAATCAG+TGG 0.668953 2_1:-7933611 Msa0192190:CDS
TAATAAGTAAAGCTAAACAA+AGG 0.672843 2_1:+7932402 None:intergenic
TAAAACTAACAATCTAACTG+AGG 0.677835 2_1:+7932171 None:intergenic
GAAGGAGAGATGGAACATGT+GGG 0.678274 2_1:-7932598 Msa0192190:CDS
TTAGTAGTATCAATGGTGGA+GGG 0.679047 2_1:+7933093 None:intergenic
TGTGGCCACTGATTAGTGGT+TGG 0.681850 2_1:+7933606 None:intergenic
GGAGAGATGGAACATGTGGG+TGG 0.710445 2_1:-7932595 Msa0192190:CDS
GTGTTTGATGAGTCACAACG+TGG 0.749573 2_1:+7933285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTGATATAAGAAAA+AGG + chr2_1:7932489-7932508 None:intergenic 10.0%
!! ATATAATTGATATAAGAAAA+AGG + chr2_1:7932489-7932508 None:intergenic 10.0%
!!! TTTGTTTAGTTTTGTATTTT+TGG - chr2_1:7933558-7933577 Msa0192190:intron 15.0%
!!! TTGTTTAGTTTTGTATTTTT+GGG - chr2_1:7933559-7933578 Msa0192190:intron 15.0%
!! TTATTGAAAAAAGAAAAAGA+AGG - chr2_1:7933604-7933623 Msa0192190:intron 15.0%
!!! TTTGTTTAGTTTTGTATTTT+TGG - chr2_1:7933558-7933577 Msa0192190:intron 15.0%
!!! TTGTTTAGTTTTGTATTTTT+GGG - chr2_1:7933559-7933578 Msa0192190:intron 15.0%
!! TTATTGAAAAAAGAAAAAGA+AGG - chr2_1:7933604-7933623 Msa0192190:intron 15.0%
!! AATAGATGATGTTAAGATAA+TGG - chr2_1:7932543-7932562 Msa0192190:CDS 20.0%
!! AGGACTAATATTATGATTTA+AGG + chr2_1:7932884-7932903 None:intergenic 20.0%
!!! AATATTAGTCCTATGTTTTA+TGG - chr2_1:7932892-7932911 Msa0192190:CDS 20.0%
!!! GTTTAAGGTTATCTTTAATT+TGG - chr2_1:7933474-7933493 Msa0192190:intron 20.0%
!! TAATAAGTAAAGCTAAACAA+AGG + chr2_1:7933502-7933521 None:intergenic 20.0%
!! AAAAGAAGGAAGAAAAAAAA+AGG - chr2_1:7933618-7933637 Msa0192190:CDS 20.0%
!! AATAGATGATGTTAAGATAA+TGG - chr2_1:7932543-7932562 Msa0192190:CDS 20.0%
!! AGGACTAATATTATGATTTA+AGG + chr2_1:7932884-7932903 None:intergenic 20.0%
!!! AATATTAGTCCTATGTTTTA+TGG - chr2_1:7932892-7932911 Msa0192190:CDS 20.0%
!!! GTTTAAGGTTATCTTTAATT+TGG - chr2_1:7933474-7933493 Msa0192190:intron 20.0%
!! TAATAAGTAAAGCTAAACAA+AGG + chr2_1:7933502-7933521 None:intergenic 20.0%
!! AAAAGAAGGAAGAAAAAAAA+AGG - chr2_1:7933618-7933637 Msa0192190:CDS 20.0%
! TTTGTGTAAATAATTGTGCA+TGG + chr2_1:7932348-7932367 None:intergenic 25.0%
! AGCTAAGCTACAAAATTAAT+TGG + chr2_1:7932384-7932403 None:intergenic 25.0%
!!! TAATTTTGTAGCTTAGCTTT+TGG - chr2_1:7932386-7932405 Msa0192190:three_prime_UTR 25.0%
!! AGTTTAATAAGTTCTAGCTA+GGG + chr2_1:7932455-7932474 None:intergenic 25.0%
!! TAGTTTAATAAGTTCTAGCT+AGG + chr2_1:7932456-7932475 None:intergenic 25.0%
!!! GTTAAGATAATGGAAAAACA+AGG - chr2_1:7932553-7932572 Msa0192190:CDS 25.0%
! AGAAGAATTAGTAGTATCAA+TGG + chr2_1:7932818-7932837 None:intergenic 25.0%
! CTTGATAAACCATAAAACAT+AGG + chr2_1:7932904-7932923 None:intergenic 25.0%
! TGTATAACCATTATGATCAT+TGG + chr2_1:7933067-7933086 None:intergenic 25.0%
! GATCATAATGGTTATACAAA+TGG - chr2_1:7933069-7933088 Msa0192190:CDS 25.0%
! CAACATAAATTCATGAATGA+TGG - chr2_1:7933210-7933229 Msa0192190:CDS 25.0%
! ATAACCTTAAACTTGAACTA+AGG + chr2_1:7933466-7933485 None:intergenic 25.0%
!!! TTAGTTTTGTATTTTTGGGT+TGG - chr2_1:7933563-7933582 Msa0192190:intron 25.0%
!!! TAGTTTTGTATTTTTGGGTT+GGG - chr2_1:7933564-7933583 Msa0192190:intron 25.0%
!! AAGGATACTTGTTAGAAAAA+TGG - chr2_1:7933637-7933656 Msa0192190:CDS 25.0%
!! AGGATACTTGTTAGAAAAAT+GGG - chr2_1:7933638-7933657 Msa0192190:CDS 25.0%
! TAAAACTAACAATCTAACTG+AGG + chr2_1:7933733-7933752 None:intergenic 25.0%
! TTTGTGTAAATAATTGTGCA+TGG + chr2_1:7932348-7932367 None:intergenic 25.0%
! AGCTAAGCTACAAAATTAAT+TGG + chr2_1:7932384-7932403 None:intergenic 25.0%
!!! TAATTTTGTAGCTTAGCTTT+TGG - chr2_1:7932386-7932405 Msa0192190:three_prime_UTR 25.0%
!! AGTTTAATAAGTTCTAGCTA+GGG + chr2_1:7932455-7932474 None:intergenic 25.0%
!! TAGTTTAATAAGTTCTAGCT+AGG + chr2_1:7932456-7932475 None:intergenic 25.0%
!!! GTTAAGATAATGGAAAAACA+AGG - chr2_1:7932553-7932572 Msa0192190:CDS 25.0%
! AGAAGAATTAGTAGTATCAA+TGG + chr2_1:7932818-7932837 None:intergenic 25.0%
! CTTGATAAACCATAAAACAT+AGG + chr2_1:7932904-7932923 None:intergenic 25.0%
! TGTATAACCATTATGATCAT+TGG + chr2_1:7933067-7933086 None:intergenic 25.0%
! GATCATAATGGTTATACAAA+TGG - chr2_1:7933069-7933088 Msa0192190:CDS 25.0%
! CAACATAAATTCATGAATGA+TGG - chr2_1:7933210-7933229 Msa0192190:CDS 25.0%
! ATAACCTTAAACTTGAACTA+AGG + chr2_1:7933466-7933485 None:intergenic 25.0%
!!! TTAGTTTTGTATTTTTGGGT+TGG - chr2_1:7933563-7933582 Msa0192190:intron 25.0%
!!! TAGTTTTGTATTTTTGGGTT+GGG - chr2_1:7933564-7933583 Msa0192190:intron 25.0%
!! AAGGATACTTGTTAGAAAAA+TGG - chr2_1:7933637-7933656 Msa0192190:CDS 25.0%
!! AGGATACTTGTTAGAAAAAT+GGG - chr2_1:7933638-7933657 Msa0192190:CDS 25.0%
! TAAAACTAACAATCTAACTG+AGG + chr2_1:7933733-7933752 None:intergenic 25.0%
! ACTCTTCAAGGATTCTATTT+TGG - chr2_1:7932227-7932246 Msa0192190:three_prime_UTR 30.0%
AGAATTAGTAGTATCAATGG+TGG + chr2_1:7932815-7932834 None:intergenic 30.0%
TAAGGTTGAATTTGAAGAAG+TGG + chr2_1:7932866-7932885 None:intergenic 30.0%
GGCTTGGAATTTAACAATTT+GGG - chr2_1:7933249-7933268 Msa0192190:CDS 30.0%
GCTTGGAATTTAACAATTTG+GGG - chr2_1:7933250-7933269 Msa0192190:CDS 30.0%
GAATTTAACAATTTGGGGAA+TGG - chr2_1:7933255-7933274 Msa0192190:CDS 30.0%
AAAGGAATGAAGAAAGATGA+AGG - chr2_1:7933285-7933304 Msa0192190:CDS 30.0%
AACGATCAAGCTTCTAATAT+TGG - chr2_1:7933396-7933415 Msa0192190:intron 30.0%
! CAATCCTTAGTTCAAGTTTA+AGG - chr2_1:7933459-7933478 Msa0192190:intron 30.0%
! ACTTGTTAGAAAAATGGGAA+AGG - chr2_1:7933643-7933662 Msa0192190:CDS 30.0%
TAGAAAAATGGGAAAGGTAA+AGG - chr2_1:7933649-7933668 Msa0192190:exon 30.0%
! ACTCTTCAAGGATTCTATTT+TGG - chr2_1:7932227-7932246 Msa0192190:three_prime_UTR 30.0%
AGAATTAGTAGTATCAATGG+TGG + chr2_1:7932815-7932834 None:intergenic 30.0%
TAAGGTTGAATTTGAAGAAG+TGG + chr2_1:7932866-7932885 None:intergenic 30.0%
GGCTTGGAATTTAACAATTT+GGG - chr2_1:7933249-7933268 Msa0192190:CDS 30.0%
GCTTGGAATTTAACAATTTG+GGG - chr2_1:7933250-7933269 Msa0192190:CDS 30.0%
GAATTTAACAATTTGGGGAA+TGG - chr2_1:7933255-7933274 Msa0192190:CDS 30.0%
AAAGGAATGAAGAAAGATGA+AGG - chr2_1:7933285-7933304 Msa0192190:CDS 30.0%
AACGATCAAGCTTCTAATAT+TGG - chr2_1:7933396-7933415 Msa0192190:intron 30.0%
! CAATCCTTAGTTCAAGTTTA+AGG - chr2_1:7933459-7933478 Msa0192190:intron 30.0%
! ACTTGTTAGAAAAATGGGAA+AGG - chr2_1:7933643-7933662 Msa0192190:CDS 30.0%
TAGAAAAATGGGAAAGGTAA+AGG - chr2_1:7933649-7933668 Msa0192190:exon 30.0%
GTTTCAAATATAGGAGAGTG+AGG + chr2_1:7932168-7932187 None:intergenic 35.0%
GCTTCAAGGGTTTCAAATAT+AGG + chr2_1:7932177-7932196 None:intergenic 35.0%
TGTTGTCTGTATACTCTTCA+AGG - chr2_1:7932215-7932234 Msa0192190:three_prime_UTR 35.0%
! TTAGTAGTATCAATGGTGGA+GGG + chr2_1:7932811-7932830 None:intergenic 35.0%
ATTAGTAGTATCAATGGTGG+AGG + chr2_1:7932812-7932831 None:intergenic 35.0%
ATGTGAATCTTCCATTCTCA+AGG - chr2_1:7932941-7932960 Msa0192190:CDS 35.0%
GAGATATTGAACCTTGAGAA+TGG + chr2_1:7932955-7932974 None:intergenic 35.0%
! TCTAGAATCTCAACAAGTTC+AGG - chr2_1:7932973-7932992 Msa0192190:CDS 35.0%
AATCCAATGGTATTCATCTG+AGG + chr2_1:7933012-7933031 None:intergenic 35.0%
CAGATGAATACCATTGGATT+AGG - chr2_1:7933012-7933031 Msa0192190:CDS 35.0%
!! ATTGGATTAGGCTTTTCATC+CGG - chr2_1:7933024-7933043 Msa0192190:CDS 35.0%
GGGCTTGGAATTTAACAATT+TGG - chr2_1:7933248-7933267 Msa0192190:CDS 35.0%
GTTTCAAATATAGGAGAGTG+AGG + chr2_1:7932168-7932187 None:intergenic 35.0%
GCTTCAAGGGTTTCAAATAT+AGG + chr2_1:7932177-7932196 None:intergenic 35.0%
TGTTGTCTGTATACTCTTCA+AGG - chr2_1:7932215-7932234 Msa0192190:three_prime_UTR 35.0%
! TTAGTAGTATCAATGGTGGA+GGG + chr2_1:7932811-7932830 None:intergenic 35.0%
ATTAGTAGTATCAATGGTGG+AGG + chr2_1:7932812-7932831 None:intergenic 35.0%
ATGTGAATCTTCCATTCTCA+AGG - chr2_1:7932941-7932960 Msa0192190:CDS 35.0%
GAGATATTGAACCTTGAGAA+TGG + chr2_1:7932955-7932974 None:intergenic 35.0%
! TCTAGAATCTCAACAAGTTC+AGG - chr2_1:7932973-7932992 Msa0192190:CDS 35.0%
AATCCAATGGTATTCATCTG+AGG + chr2_1:7933012-7933031 None:intergenic 35.0%
CAGATGAATACCATTGGATT+AGG - chr2_1:7933012-7933031 Msa0192190:CDS 35.0%
!! ATTGGATTAGGCTTTTCATC+CGG - chr2_1:7933024-7933043 Msa0192190:CDS 35.0%
GGGCTTGGAATTTAACAATT+TGG - chr2_1:7933248-7933267 Msa0192190:CDS 35.0%
TACAGACAACAAAGAGCAGT+TGG + chr2_1:7932206-7932225 None:intergenic 40.0%
CAAGCTTTGCAGAAATGTCT+TGG + chr2_1:7932679-7932698 None:intergenic 40.0%
GCAAAGCTTGCAAACGTTAT+TGG - chr2_1:7932689-7932708 Msa0192190:CDS 40.0%
TGCAAACGTTATTGGACAAG+AGG - chr2_1:7932697-7932716 Msa0192190:CDS 40.0%
AAACGTTATTGGACAAGAGG+TGG - chr2_1:7932700-7932719 Msa0192190:CDS 40.0%
ACTCTTAGGAATGTTCCTGT+TGG - chr2_1:7932724-7932743 Msa0192190:CDS 40.0%
TGAAGAAGTGGTGTTTGATG+TGG + chr2_1:7932854-7932873 None:intergenic 40.0%
GGATGAAAAGCCTAATCCAA+TGG + chr2_1:7933025-7933044 None:intergenic 40.0%
!! TTGGATTAGGCTTTTCATCC+GGG - chr2_1:7933025-7933044 Msa0192190:CDS 40.0%
!! ATTATGATCATTGGCTTCGC+TGG + chr2_1:7933058-7933077 None:intergenic 40.0%
AGCGAAGCCAATGATCATAA+TGG - chr2_1:7933057-7933076 Msa0192190:CDS 40.0%
GGCATAACTGATGCATTACT+TGG + chr2_1:7933165-7933184 None:intergenic 40.0%
! TGATGGTAGCAACACTTTTC+AGG - chr2_1:7933227-7933246 Msa0192190:CDS 40.0%
! GATGGTAGCAACACTTTTCA+GGG - chr2_1:7933228-7933247 Msa0192190:CDS 40.0%
GAAGAAAGATGAAGGAGAGA+TGG - chr2_1:7933293-7933312 Msa0192190:CDS 40.0%
TTCCAGTAAAGTGAAGAAGC+TGG + chr2_1:7933345-7933364 None:intergenic 40.0%
ACAGCATCATCATCAGCTAT+TGG - chr2_1:7933366-7933385 Msa0192190:CDS 40.0%
! CATCATCAGCTATTGGTGTT+TGG - chr2_1:7933373-7933392 Msa0192190:intron 40.0%
ACAATCTAACTGAGGTTTGC+TGG + chr2_1:7933725-7933744 None:intergenic 40.0%
TACAGACAACAAAGAGCAGT+TGG + chr2_1:7932206-7932225 None:intergenic 40.0%
CAAGCTTTGCAGAAATGTCT+TGG + chr2_1:7932679-7932698 None:intergenic 40.0%
GCAAAGCTTGCAAACGTTAT+TGG - chr2_1:7932689-7932708 Msa0192190:CDS 40.0%
TGCAAACGTTATTGGACAAG+AGG - chr2_1:7932697-7932716 Msa0192190:CDS 40.0%
AAACGTTATTGGACAAGAGG+TGG - chr2_1:7932700-7932719 Msa0192190:CDS 40.0%
ACTCTTAGGAATGTTCCTGT+TGG - chr2_1:7932724-7932743 Msa0192190:CDS 40.0%
TGAAGAAGTGGTGTTTGATG+TGG + chr2_1:7932854-7932873 None:intergenic 40.0%
GGATGAAAAGCCTAATCCAA+TGG + chr2_1:7933025-7933044 None:intergenic 40.0%
!! TTGGATTAGGCTTTTCATCC+GGG - chr2_1:7933025-7933044 Msa0192190:CDS 40.0%
!! ATTATGATCATTGGCTTCGC+TGG + chr2_1:7933058-7933077 None:intergenic 40.0%
AGCGAAGCCAATGATCATAA+TGG - chr2_1:7933057-7933076 Msa0192190:CDS 40.0%
GGCATAACTGATGCATTACT+TGG + chr2_1:7933165-7933184 None:intergenic 40.0%
! TGATGGTAGCAACACTTTTC+AGG - chr2_1:7933227-7933246 Msa0192190:CDS 40.0%
! GATGGTAGCAACACTTTTCA+GGG - chr2_1:7933228-7933247 Msa0192190:CDS 40.0%
GAAGAAAGATGAAGGAGAGA+TGG - chr2_1:7933293-7933312 Msa0192190:CDS 40.0%
TTCCAGTAAAGTGAAGAAGC+TGG + chr2_1:7933345-7933364 None:intergenic 40.0%
ACAGCATCATCATCAGCTAT+TGG - chr2_1:7933366-7933385 Msa0192190:CDS 40.0%
! CATCATCAGCTATTGGTGTT+TGG - chr2_1:7933373-7933392 Msa0192190:intron 40.0%
ACAATCTAACTGAGGTTTGC+TGG + chr2_1:7933725-7933744 None:intergenic 40.0%
! CAGTTGGTCACTAGCTTCAA+GGG + chr2_1:7932190-7932209 None:intergenic 45.0%
TGCATGGAGATAGAGAGAGA+GGG + chr2_1:7932332-7932351 None:intergenic 45.0%
GTGTTTGATGAGTCACAACG+TGG + chr2_1:7932619-7932638 None:intergenic 45.0%
CTTAGGAATGTTCCTGTTGG+TGG - chr2_1:7932727-7932746 Msa0192190:CDS 45.0%
GTGGTGTTTGATGTGGAACT+AGG + chr2_1:7932847-7932866 None:intergenic 45.0%
CAGCCTCAGATGAATACCAT+TGG - chr2_1:7933006-7933025 Msa0192190:CDS 45.0%
AGAGCAGAACTCAACAGAGA+AGG + chr2_1:7933186-7933205 None:intergenic 45.0%
!! TAGCAACACTTTTCAGGGCT+TGG - chr2_1:7933233-7933252 Msa0192190:CDS 45.0%
TTGGGGAATGGAAGTGAGAA+AGG - chr2_1:7933267-7933286 Msa0192190:CDS 45.0%
TGAAGGAGAGATGGAACATG+TGG - chr2_1:7933302-7933321 Msa0192190:CDS 45.0%
GAAGGAGAGATGGAACATGT+GGG - chr2_1:7933303-7933322 Msa0192190:CDS 45.0%
CAGTAAAGTGAAGAAGCTGG+TGG + chr2_1:7933342-7933361 None:intergenic 45.0%
CACCAGCTTCTTCACTTTAC+TGG - chr2_1:7933340-7933359 Msa0192190:CDS 45.0%
GAAAGGTAAAGGTGAGCTAG+AGG - chr2_1:7933660-7933679 Msa0192190:exon 45.0%
!! TGAGCTAGAGGAGAGTACTT+TGG - chr2_1:7933672-7933691 Msa0192190:five_prime_UTR 45.0%
TTGCTGGATGCAGCTTACAT+AGG + chr2_1:7933709-7933728 None:intergenic 45.0%
! CAGTTGGTCACTAGCTTCAA+GGG + chr2_1:7932190-7932209 None:intergenic 45.0%
TGCATGGAGATAGAGAGAGA+GGG + chr2_1:7932332-7932351 None:intergenic 45.0%
GTGTTTGATGAGTCACAACG+TGG + chr2_1:7932619-7932638 None:intergenic 45.0%
CTTAGGAATGTTCCTGTTGG+TGG - chr2_1:7932727-7932746 Msa0192190:CDS 45.0%
GTGGTGTTTGATGTGGAACT+AGG + chr2_1:7932847-7932866 None:intergenic 45.0%
CAGCCTCAGATGAATACCAT+TGG - chr2_1:7933006-7933025 Msa0192190:CDS 45.0%
AGAGCAGAACTCAACAGAGA+AGG + chr2_1:7933186-7933205 None:intergenic 45.0%
!! TAGCAACACTTTTCAGGGCT+TGG - chr2_1:7933233-7933252 Msa0192190:CDS 45.0%
TTGGGGAATGGAAGTGAGAA+AGG - chr2_1:7933267-7933286 Msa0192190:CDS 45.0%
TGAAGGAGAGATGGAACATG+TGG - chr2_1:7933302-7933321 Msa0192190:CDS 45.0%
GAAGGAGAGATGGAACATGT+GGG - chr2_1:7933303-7933322 Msa0192190:CDS 45.0%
CAGTAAAGTGAAGAAGCTGG+TGG + chr2_1:7933342-7933361 None:intergenic 45.0%
CACCAGCTTCTTCACTTTAC+TGG - chr2_1:7933340-7933359 Msa0192190:CDS 45.0%
GAAAGGTAAAGGTGAGCTAG+AGG - chr2_1:7933660-7933679 Msa0192190:exon 45.0%
!! TGAGCTAGAGGAGAGTACTT+TGG - chr2_1:7933672-7933691 Msa0192190:five_prime_UTR 45.0%
TTGCTGGATGCAGCTTACAT+AGG + chr2_1:7933709-7933728 None:intergenic 45.0%
! GCAGTTGGTCACTAGCTTCA+AGG + chr2_1:7932191-7932210 None:intergenic 50.0%
CTGATTAGTGGTTGGAGGGA+TGG + chr2_1:7932290-7932309 None:intergenic 50.0%
TCCCTCCAACCACTAATCAG+TGG - chr2_1:7932290-7932309 Msa0192190:three_prime_UTR 50.0%
! GCCACTGATTAGTGGTTGGA+GGG + chr2_1:7932294-7932313 None:intergenic 50.0%
! TGTGGCCACTGATTAGTGGT+TGG + chr2_1:7932298-7932317 None:intergenic 50.0%
AACCACTAATCAGTGGCCAC+AGG - chr2_1:7932297-7932316 Msa0192190:three_prime_UTR 50.0%
! AACCTGTGGCCACTGATTAG+TGG + chr2_1:7932302-7932321 None:intergenic 50.0%
GTGCATGGAGATAGAGAGAG+AGG + chr2_1:7932333-7932352 None:intergenic 50.0%
GGACAAGAGGTGGTACTCTT+AGG - chr2_1:7932710-7932729 Msa0192190:CDS 50.0%
! AGGAATGTTCCTGTTGGTGG+TGG - chr2_1:7932730-7932749 Msa0192190:CDS 50.0%
CTTCTGTAACCACCACCAAC+AGG + chr2_1:7932742-7932761 None:intergenic 50.0%
! GCAGTTGGTCACTAGCTTCA+AGG + chr2_1:7932191-7932210 None:intergenic 50.0%
CTGATTAGTGGTTGGAGGGA+TGG + chr2_1:7932290-7932309 None:intergenic 50.0%
TCCCTCCAACCACTAATCAG+TGG - chr2_1:7932290-7932309 Msa0192190:three_prime_UTR 50.0%
! GCCACTGATTAGTGGTTGGA+GGG + chr2_1:7932294-7932313 None:intergenic 50.0%
! TGTGGCCACTGATTAGTGGT+TGG + chr2_1:7932298-7932317 None:intergenic 50.0%
AACCACTAATCAGTGGCCAC+AGG - chr2_1:7932297-7932316 Msa0192190:three_prime_UTR 50.0%
! AACCTGTGGCCACTGATTAG+TGG + chr2_1:7932302-7932321 None:intergenic 50.0%
GTGCATGGAGATAGAGAGAG+AGG + chr2_1:7932333-7932352 None:intergenic 50.0%
GGACAAGAGGTGGTACTCTT+AGG - chr2_1:7932710-7932729 Msa0192190:CDS 50.0%
! AGGAATGTTCCTGTTGGTGG+TGG - chr2_1:7932730-7932749 Msa0192190:CDS 50.0%
CTTCTGTAACCACCACCAAC+AGG + chr2_1:7932742-7932761 None:intergenic 50.0%
! GGCCACTGATTAGTGGTTGG+AGG + chr2_1:7932295-7932314 None:intergenic 55.0%
GAGAGGGAGAGATGAACCTG+TGG + chr2_1:7932316-7932335 None:intergenic 55.0%
GGAGAGATGGAACATGTGGG+TGG - chr2_1:7933306-7933325 Msa0192190:CDS 55.0%
! GGCCACTGATTAGTGGTTGG+AGG + chr2_1:7932295-7932314 None:intergenic 55.0%
GAGAGGGAGAGATGAACCTG+TGG + chr2_1:7932316-7932335 None:intergenic 55.0%
GGAGAGATGGAACATGTGGG+TGG - chr2_1:7933306-7933325 Msa0192190:CDS 55.0%
GGCTTCGCTGGACGTAAACC+CGG + chr2_1:7933046-7933065 None:intergenic 60.0%
GGCTTCGCTGGACGTAAACC+CGG + chr2_1:7933046-7933065 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7932165 7933758 7932165 ID=Msa0192190;Name=Msa0192190
chr2_1 mRNA 7932165 7933758 7932165 ID=Msa0192190-mRNA-1;Parent=Msa0192190;Name=Msa0192190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=94|1|1|1|1|1|2|315|321
chr2_1 exon 7932165 7933385 7932165 ID=Msa0192190-mRNA-1:exon:3678;Parent=Msa0192190-mRNA-1
chr2_1 exon 7933605 7933758 7933605 ID=Msa0192190-mRNA-1:exon:3677;Parent=Msa0192190-mRNA-1
chr2_1 five_prime_UTR 7933665 7933758 7933665 ID=Msa0192190-mRNA-1:five_prime_utr;Parent=Msa0192190-mRNA-1
chr2_1 CDS 7933605 7933664 7933605 ID=Msa0192190-mRNA-1:cds;Parent=Msa0192190-mRNA-1
chr2_1 CDS 7932480 7933385 7932480 ID=Msa0192190-mRNA-1:cds;Parent=Msa0192190-mRNA-1
chr2_1 three_prime_UTR 7932165 7932479 7932165 ID=Msa0192190-mRNA-1:three_prime_utr;Parent=Msa0192190-mRNA-1
Gene Sequence

>Msa0192190

ATGTTATCTAACTATGAGAAAATGCTTGCCATCCCTCCAACCACTAATCAGTGGCCACAGAATCAAATAGATGATGTTAAGATAATGGAAAAACAAGGTCAAGAACTTCAGCAGCAGCAGCAGCAAGCTCTCAAGTGTCCACGTTGTGACTCATCAAACACAAAGTTTTGTTACTACAACAACTACAGTTTGTCACAACCAAGACATTTCTGCAAAGCTTGCAAACGTTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGTGGTTACAGAAGAAACAACTCAAACAAACGTAGTAACAATACTACTCTCATCAAAAGACCCTCCACCATTGATACTACTAATTCTTCTTCAACTCCTAGTTCCACATCAAACACCACTTCTTCAAATTCAACCTTAAATCATAATATTAGTCCTATGTTTTATGGTTTATCAAGTAGTAATAACTCTTGTGATGTGAATCTTCCATTCTCAAGGTTCAATATCTCTAGAATCTCAACAAGTTCAGGTTATGATTTTCAGCCTCAGATGAATACCATTGGATTAGGCTTTTCATCCGGGTTTACGTCCAGCGAAGCCAATGATCATAATGGTTATACAAATGGATTTACTTCAAATAATAATAATAACACTCTTGTCTCAAGATGTGATTCAATCTTTAGCTCTTCTTCTGCACCAAGTAATGCATCAGTTATGCCTTCTCTGTTGAGTTCTGCTCTGCTGCAACATAAATTCATGAATGATGGTAGCAACACTTTTCAGGGCTTGGAATTTAACAATTTGGGGAATGGAAGTGAGAAAGGAATGAAGAAAGATGAAGGAGAGATGGAACATGTGGGTGGTTTGTATGATCCACCAGCTTCTTCACTTTACTGGAATACAGCATCATCATCAGCTATTGGTGTTTGGAACGATCAAGCTTCTAATATTGGTTCATCAGTTACTTCTTTGATCTAG
Protein sequence

>Msa0192190

MLSNYEKMLAIPPTTNQWPQNQIDDVKIMEKQGQELQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNSNKRSNNTTLIKRPSTIDTTNSSSTPSSTSNTTSSNSTLNHNISPMFYGLSSSNNSCDVNLPFSRFNISRISTSSGYDFQPQMNTIGLGFSSGFTSSEANDHNGYTNGFTSNNNNNTLVSRCDSIFSSSSAPSNASVMPSLLSSALLQHKFMNDGSNTFQGLEFNNLGNGSEKGMKKDEGEMEHVGGLYDPPASSLYWNTASSSAIGVWNDQASNIGSSVTSLI*