Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192530 | XP_013448301.1 | 88.150 | 346 | 34 | 3 | 1 | 344 | 1 | 341 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192530 | sp|Q8RWD7|EMB74_ARATH | 38.053 | 113 | 63 | 3 | 22 | 132 | 64 | 171 | 1.70e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192530 | A0A072TZN4 | 88.150 | 346 | 34 | 3 | 1 | 344 | 1 | 341 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0192530 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192530 | Msa0272670 | 0.870016 | 2.005256e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192530 | MtrunA17_Chr7g0231611 | 88.150 | 346 | 34 | 3 | 1 | 344 | 1 | 341 | 0.0 | 612 |
| Msa0192530 | MtrunA17_Chr5g0416851 | 88.439 | 346 | 33 | 3 | 1 | 344 | 1 | 341 | 0.0 | 602 |
| Msa0192530 | MtrunA17_Chr2g0282701 | 86.000 | 250 | 15 | 2 | 96 | 344 | 42 | 272 | 1.15e-143 | 408 |
| Msa0192530 | MtrunA17_Chr1g0182611 | 30.814 | 172 | 101 | 6 | 1 | 163 | 1 | 163 | 1.22e-15 | 78.2 |
| Msa0192530 | MtrunA17_Chr1g0182621 | 35.294 | 119 | 63 | 4 | 22 | 134 | 28 | 138 | 2.72e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192530 | AT1G58210.1 | 38.053 | 113 | 63 | 3 | 22 | 132 | 64 | 171 | 1.72e-17 | 82.0 |
Find 99 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTCATTGGGGATTA+GGG | 0.201892 | 2_1:-8342362 | None:intergenic |
| TCAATTTCTCATTGGGGATT+AGG | 0.219132 | 2_1:-8342363 | None:intergenic |
| GTTACAGTCTTCAACCTTAA+TGG | 0.221203 | 2_1:+8342398 | Msa0192530:five_prime_UTR |
| TCCACTTTACGTAAAGAAAT+TGG | 0.221596 | 2_1:+8345030 | Msa0192530:CDS |
| CCTTGTGGTCACTTGATAAT+TGG | 0.239096 | 2_1:-8345060 | None:intergenic |
| GTGTGGTGGTGGAACGTATT+GGG | 0.250160 | 2_1:-8343840 | None:intergenic |
| TTACCTTACTGTTGCCATTA+AGG | 0.253130 | 2_1:-8342412 | None:intergenic |
| GGTGGAACGTATTGGGGTTT+TGG | 0.271264 | 2_1:-8343833 | None:intergenic |
| GATGTAGTCTTCATAGGATT+TGG | 0.279770 | 2_1:+8345331 | Msa0192530:CDS |
| TCCAATTTCTTTACGTAAAG+TGG | 0.301497 | 2_1:-8345031 | None:intergenic |
| CCAAGGTACTTGCTTCTTGA+TGG | 0.302718 | 2_1:+8342298 | Msa0192530:five_prime_UTR |
| GTGATTTATAATGGTGAAAA+TGG | 0.304153 | 2_1:+8344707 | Msa0192530:CDS |
| CAGTTGGATTTCCACACAAT+TGG | 0.315477 | 2_1:+8344513 | Msa0192530:CDS |
| CAGTATCTCAATTTCTCATT+GGG | 0.329990 | 2_1:-8342370 | None:intergenic |
| GTGATTTCTAATGGTGAAAA+TGG | 0.338731 | 2_1:+8344917 | Msa0192530:CDS |
| GCCTCACATACATCTCAAAA+TGG | 0.350427 | 2_1:+8344254 | Msa0192530:CDS |
| GTTGGAGAGGGGTGTGGTGG+TGG | 0.351038 | 2_1:-8343851 | None:intergenic |
| TGTGGTGGTGGAACGTATTG+GGG | 0.352785 | 2_1:-8343839 | None:intergenic |
| TCATAGGATTTGGAGGCCTT+TGG | 0.354277 | 2_1:+8345341 | Msa0192530:CDS |
| CAAGTTGGCGTGATTTATAA+TGG | 0.357302 | 2_1:+8344698 | Msa0192530:CDS |
| GGCCTTTGGAATGTTCAAAT+TGG | 0.361861 | 2_1:+8345355 | Msa0192530:CDS |
| TGCAAGGGTTTAGCTCTTGC+TGG | 0.372413 | 2_1:+8344029 | Msa0192530:CDS |
| GGTGTGGTGGTGGAACGTAT+TGG | 0.373524 | 2_1:-8343841 | None:intergenic |
| AATTATTCAGCTCATAGTTC+AGG | 0.376079 | 2_1:+8344539 | Msa0192530:CDS |
| GCTAAACCCTTGCATTGGTT+TGG | 0.379957 | 2_1:-8344020 | None:intergenic |
| AGCAGCTGATGAAACTTTGC+AGG | 0.381501 | 2_1:+8344772 | Msa0192530:CDS |
| GCAGTATCTCAATTTCTCAT+TGG | 0.384354 | 2_1:-8342371 | None:intergenic |
| TATACAGATGTAGTCTTCAT+AGG | 0.386534 | 2_1:+8345325 | Msa0192530:CDS |
| AAGTCACATGATGCTTATAA+AGG | 0.387819 | 2_1:+8345165 | Msa0192530:CDS |
| TGAAACTTTGCAGGAAGATA+TGG | 0.392140 | 2_1:+8344781 | Msa0192530:CDS |
| TCTTGCTGGCATTGCTTCAA+TGG | 0.402134 | 2_1:+8344043 | Msa0192530:CDS |
| ATACCGGTAACTTGTGTAGT+AGG | 0.407561 | 2_1:+8345116 | Msa0192530:CDS |
| ACAACAATATTGCGAGTCTA+AGG | 0.409478 | 2_1:+8344663 | Msa0192530:CDS |
| CAGGTTGCCGTGATTTCTAA+TGG | 0.414513 | 2_1:+8344908 | Msa0192530:CDS |
| CACCCTACTACACAAGTTAC+CGG | 0.426920 | 2_1:-8345119 | None:intergenic |
| GGGTCTTAAGTTGTCTCAAC+AGG | 0.433791 | 2_1:+8344829 | Msa0192530:CDS |
| CCCATGAGCCAGGCAGTGTT+AGG | 0.434002 | 2_1:+8345005 | Msa0192530:CDS |
| TTTGAAGATTGAGTTGGAGA+GGG | 0.438182 | 2_1:-8343863 | None:intergenic |
| GAACACGTGGATAAAGTTAC+TGG | 0.442596 | 2_1:+8344572 | Msa0192530:CDS |
| AAACCCTTGCATTGGTTTGG+AGG | 0.442882 | 2_1:-8344017 | None:intergenic |
| ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 2_1:-8344198 | None:intergenic |
| GCAATGTTGTCATTACCTTC+AGG | 0.449864 | 2_1:-8344806 | None:intergenic |
| GAAGGTAATGACAACATTGC+GGG | 0.450334 | 2_1:+8344809 | Msa0192530:CDS |
| GTTGTCTCAACAGGAAGATA+TGG | 0.457391 | 2_1:+8344838 | Msa0192530:CDS |
| CACATGATGCTTATAAAGGA+TGG | 0.459002 | 2_1:+8345169 | Msa0192530:CDS |
| TTTAGATTTGAAGATTGAGT+TGG | 0.459049 | 2_1:-8343869 | None:intergenic |
| TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 2_1:-8344197 | None:intergenic |
| AGAATTGAGAATTACCGTTT+CGG | 0.465704 | 2_1:-8343526 | None:intergenic |
| CTTCTGTTAGAAGATCTACC+AGG | 0.478887 | 2_1:+8345215 | Msa0192530:CDS |
| ACCTAACACTGCCTGGCTCA+TGG | 0.480484 | 2_1:-8345006 | None:intergenic |
| GCAATGTTGTCATTACCTTC+CGG | 0.481010 | 2_1:-8344863 | None:intergenic |
| TGAGTTGGAGAGGGGTGTGG+TGG | 0.489080 | 2_1:-8343854 | None:intergenic |
| ATTTGAAGATTGAGTTGGAG+AGG | 0.496033 | 2_1:-8343864 | None:intergenic |
| TTATGTCGCCGTTTCTCAGT+TGG | 0.496930 | 2_1:+8344497 | Msa0192530:CDS |
| TGATACATTTCTTATCCTTG+TGG | 0.504839 | 2_1:-8345075 | None:intergenic |
| GATTGAGTTGGAGAGGGGTG+TGG | 0.509260 | 2_1:-8343857 | None:intergenic |
| GTAGTCTTCATAGGATTTGG+AGG | 0.510282 | 2_1:+8345334 | Msa0192530:CDS |
| TTGAAGATTGAGTTGGAGAG+GGG | 0.510736 | 2_1:-8343862 | None:intergenic |
| CAACCTTAATGGCAACAGTA+AGG | 0.514637 | 2_1:+8342409 | Msa0192530:five_prime_UTR |
| ATTTCTCATTGGGGATTAGG+GGG | 0.521839 | 2_1:-8342360 | None:intergenic |
| TCTTGATTTGTCTCAACCGC+AGG | 0.523290 | 2_1:+8344889 | Msa0192530:CDS |
| AATTTCTCATTGGGGATTAG+GGG | 0.525370 | 2_1:-8342361 | None:intergenic |
| CCTAACACTGCCTGGCTCAT+GGG | 0.526114 | 2_1:-8345005 | None:intergenic |
| CAAGAGCTAAACCCTTGCAT+TGG | 0.528805 | 2_1:-8344025 | None:intergenic |
| AGCGACTGAGACACCGCATA+AGG | 0.539808 | 2_1:+8342224 | Msa0192530:five_prime_UTR |
| TCAACAGGAAGATATGGAAC+CGG | 0.540435 | 2_1:+8344844 | Msa0192530:CDS |
| TTTGATCCTACCCATGAGCC+AGG | 0.541769 | 2_1:+8344995 | Msa0192530:CDS |
| GACACCGCATAAGGAGAAGT+TGG | 0.541978 | 2_1:+8342233 | Msa0192530:five_prime_UTR |
| AAGAAGAATGTAGATGATAC+CGG | 0.549093 | 2_1:+8345100 | Msa0192530:CDS |
| AGTGGAGACCTAACACTGCC+TGG | 0.549411 | 2_1:-8345013 | None:intergenic |
| GTGGAAATCCAACTGAGAAA+CGG | 0.556021 | 2_1:-8344505 | None:intergenic |
| TATGTCGCTCGCTGCATCCA+AGG | 0.559906 | 2_1:+8342281 | Msa0192530:five_prime_UTR |
| GAAGATCAAAGCTTCCGAAA+CGG | 0.561192 | 2_1:+8343512 | Msa0192530:intron |
| ACATGATGCTTATAAAGGAT+GGG | 0.566978 | 2_1:+8345170 | Msa0192530:CDS |
| CTCTCCAACTTCTCCTTATG+CGG | 0.570299 | 2_1:-8342237 | None:intergenic |
| CTTATGGAATATGCTTCTTG+AGG | 0.573377 | 2_1:-8345380 | None:intergenic |
| GGCATCACTGTAATGTTCCA+CGG | 0.577101 | 2_1:+8344221 | Msa0192530:CDS |
| CCATCAAGAAGCAAGTACCT+TGG | 0.579568 | 2_1:-8342298 | None:intergenic |
| CATCGACAAGAAAATCAGAA+TGG | 0.597549 | 2_1:+8343807 | Msa0192530:intron |
| CACCAATTTGAACATTCCAA+AGG | 0.601473 | 2_1:-8345357 | None:intergenic |
| TTATAAATCACGCCAACTTG+AGG | 0.603466 | 2_1:-8344695 | None:intergenic |
| AGTATCTCAATTTCTCATTG+GGG | 0.603616 | 2_1:-8342369 | None:intergenic |
| TACCGGTAACTTGTGTAGTA+GGG | 0.605302 | 2_1:+8345117 | Msa0192530:CDS |
| GAAACCTCCAAACCAATGCA+AGG | 0.605866 | 2_1:+8344013 | Msa0192530:CDS |
| ACACTGCCTGGCTCATGGGT+AGG | 0.608929 | 2_1:-8345001 | None:intergenic |
| CCAATTATCAAGTGACCACA+AGG | 0.618748 | 2_1:+8345060 | Msa0192530:CDS |
| CAGGAAGATATGGAACCTGA+AGG | 0.622434 | 2_1:+8344791 | Msa0192530:CDS |
| AAACCTCCAAACCAATGCAA+GGG | 0.637222 | 2_1:+8344014 | Msa0192530:CDS |
| GTTACCTTCAGCTTCCTGTG+AGG | 0.642766 | 2_1:-8344642 | None:intergenic |
| GAGACCTCACAGGAAGCTGA+AGG | 0.643008 | 2_1:+8344638 | Msa0192530:CDS |
| AACAGCTGATGAGACCTCAC+AGG | 0.646895 | 2_1:+8344628 | Msa0192530:CDS |
| AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 2_1:+8344200 | Msa0192530:CDS |
| AGGTTGTCTCTACCTCAAGT+TGG | 0.659012 | 2_1:+8344683 | Msa0192530:CDS |
| CAGGAAGATATGGAACCGGA+AGG | 0.662654 | 2_1:+8344848 | Msa0192530:CDS |
| AGGAAATGAATGTGAACACG+TGG | 0.663886 | 2_1:+8344559 | Msa0192530:CDS |
| TTCTGTTAGAAGATCTACCA+GGG | 0.673391 | 2_1:+8345216 | Msa0192530:CDS |
| TTAGAAATCACGGCAACCTG+CGG | 0.679371 | 2_1:-8344905 | None:intergenic |
| TGAAGGTAATGACAACATTG+CGG | 0.680073 | 2_1:+8344808 | Msa0192530:CDS |
| GTGAGGCGTTAATCAAACCG+TGG | 0.715788 | 2_1:-8344238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATTTAATTAAATAAGTC+AGG | - | chr2_1:8343258-8343277 | None:intergenic | 15.0% |
| !! | TTGTTTCAATTCTTAACATA+TGG | + | chr2_1:8342441-8342460 | Msa0192530:intron | 20.0% |
| !! | ATGAAATAAGTATCATCATT+TGG | - | chr2_1:8342642-8342661 | None:intergenic | 20.0% |
| !! | AATCATGCATTTAGAAAAAT+AGG | - | chr2_1:8342998-8343017 | None:intergenic | 20.0% |
| !! | TAATTAAATAAGTCAGGTTA+AGG | - | chr2_1:8343252-8343271 | None:intergenic | 20.0% |
| !! | ATCAATTGAAATAAAAGACA+TGG | - | chr2_1:8343562-8343581 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTTTCACTTTGT+AGG | + | chr2_1:8344072-8344091 | Msa0192530:intron | 20.0% |
| !! | TTTCTAATTGGTTATTTGTT+TGG | + | chr2_1:8344095-8344114 | Msa0192530:intron | 20.0% |
| !! | TTCTAATTGGTTATTTGTTT+GGG | + | chr2_1:8344096-8344115 | Msa0192530:intron | 20.0% |
| !! | TTGAATATAATTAGTGTGTT+TGG | + | chr2_1:8344372-8344391 | Msa0192530:intron | 20.0% |
| !!! | TTTTTTATAATTTAGTACCC+TGG | - | chr2_1:8345236-8345255 | None:intergenic | 20.0% |
| ! | ACAAAATTACTGATGAAGTT+TGG | - | chr2_1:8342565-8342584 | None:intergenic | 25.0% |
| ! | TAAGTAATCAAAGCCTTAAT+AGG | + | chr2_1:8343192-8343211 | Msa0192530:intron | 25.0% |
| !! | TTTTCTTTGGATAACCATAA+GGG | - | chr2_1:8343382-8343401 | None:intergenic | 25.0% |
| !! | CTTTCTTTCTTTCTTTTCTT+TGG | - | chr2_1:8343395-8343414 | None:intergenic | 25.0% |
| ! | AAAGACGAAAATAACAAAAG+CGG | - | chr2_1:8343436-8343455 | None:intergenic | 25.0% |
| !! | AAAATTGAAGAAAGTATGTG+AGG | - | chr2_1:8343657-8343676 | None:intergenic | 25.0% |
| ! | TTTAGATTTGAAGATTGAGT+TGG | - | chr2_1:8343872-8343891 | None:intergenic | 25.0% |
| ! | AGAGAAATGAGAAAGAAAAA+GGG | - | chr2_1:8344301-8344320 | None:intergenic | 25.0% |
| ! | AAGAGAAATGAGAAAGAAAA+AGG | - | chr2_1:8344302-8344321 | None:intergenic | 25.0% |
| !! | GAATAATTTTTCCAATTGTG+TGG | - | chr2_1:8344527-8344546 | None:intergenic | 25.0% |
| ! | GTGATTTATAATGGTGAAAA+TGG | + | chr2_1:8344707-8344726 | Msa0192530:CDS | 25.0% |
| !! | ATTTTCACCATTAGAAATCA+CGG | - | chr2_1:8344918-8344937 | None:intergenic | 25.0% |
| ! | ATCCTAACAGAAAAATTAGT+TGG | + | chr2_1:8345288-8345307 | Msa0192530:intron | 25.0% |
| AGTATCTCAATTTCTCATTG+GGG | - | chr2_1:8342372-8342391 | None:intergenic | 30.0% | |
| CAGTATCTCAATTTCTCATT+GGG | - | chr2_1:8342373-8342392 | None:intergenic | 30.0% | |
| ! | ATGTCATGTTGTCATGTTTT+GGG | - | chr2_1:8342763-8342782 | None:intergenic | 30.0% |
| !!! | TGCTTGTCTTGTTTTGATTT+TGG | + | chr2_1:8342850-8342869 | Msa0192530:intron | 30.0% |
| !!! | TTGTCTTGTTTTGATTTTGG+AGG | + | chr2_1:8342853-8342872 | Msa0192530:intron | 30.0% |
| ! | TGTTTGATTTATGAGCCTAA+TGG | + | chr2_1:8343030-8343049 | Msa0192530:intron | 30.0% |
| ! | GTTTGATTTATGAGCCTAAT+GGG | + | chr2_1:8343031-8343050 | Msa0192530:intron | 30.0% |
| TGATTACTTAAAGTCAGAGA+GGG | - | chr2_1:8343100-8343119 | None:intergenic | 30.0% | |
| TTGATTACTTAAAGTCAGAG+AGG | - | chr2_1:8343101-8343120 | None:intergenic | 30.0% | |
| TAATCAAAGCCTTAATAGGT+TGG | + | chr2_1:8343196-8343215 | Msa0192530:intron | 30.0% | |
| GACCAAGCTAAACTTTAAAT+AGG | + | chr2_1:8343313-8343332 | Msa0192530:intron | 30.0% | |
| ! | AGCCTATTTAAAGTTTAGCT+TGG | - | chr2_1:8343318-8343337 | None:intergenic | 30.0% |
| AGCTAAACTTTAAATAGGCT+AGG | + | chr2_1:8343318-8343337 | Msa0192530:intron | 30.0% | |
| TTTCTTTGGATAACCATAAG+GGG | - | chr2_1:8343381-8343400 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTGGATAACCATA+AGG | - | chr2_1:8343383-8343402 | None:intergenic | 30.0% |
| AAGACGAAAATAACAAAAGC+GGG | - | chr2_1:8343435-8343454 | None:intergenic | 30.0% | |
| TTCTCTTCCATTCTTTCATA+CGG | + | chr2_1:8343486-8343505 | Msa0192530:intron | 30.0% | |
| AGAATTGAGAATTACCGTTT+CGG | - | chr2_1:8343529-8343548 | None:intergenic | 30.0% | |
| ATAAGCGCATAAAAAAGAAG+GGG | - | chr2_1:8343618-8343637 | None:intergenic | 30.0% | |
| GATAAGCGCATAAAAAAGAA+GGG | - | chr2_1:8343619-8343638 | None:intergenic | 30.0% | |
| TGATAAGCGCATAAAAAAGA+AGG | - | chr2_1:8343620-8343639 | None:intergenic | 30.0% | |
| TCTCATCATATCATGTCTAT+TGG | + | chr2_1:8343698-8343717 | Msa0192530:intron | 30.0% | |
| AATGGCAACAAATGAGATAA+TGG | - | chr2_1:8343729-8343748 | None:intergenic | 30.0% | |
| GAGTAAGAAACTTAGAGAAA+TGG | - | chr2_1:8343747-8343766 | None:intergenic | 30.0% | |
| ATCTGCAAAAATAAGCAAGT+AGG | - | chr2_1:8343969-8343988 | None:intergenic | 30.0% | |
| ! | TGCAGATTTTCTTACATGAA+TGG | + | chr2_1:8343982-8344001 | Msa0192530:intron | 30.0% |
| ! | AGATTTTCTTACATGAATGG+TGG | + | chr2_1:8343985-8344004 | Msa0192530:intron | 30.0% |
| TCACTTTGTAGGTTTCTAAT+TGG | + | chr2_1:8344083-8344102 | Msa0192530:intron | 30.0% | |
| ! | TCAAAATGGTTTTTCTTCTG+AGG | + | chr2_1:8344268-8344287 | Msa0192530:CDS | 30.0% |
| AATTATTCAGCTCATAGTTC+AGG | + | chr2_1:8344539-8344558 | Msa0192530:CDS | 30.0% | |
| GTGATTTCTAATGGTGAAAA+TGG | + | chr2_1:8344917-8344936 | Msa0192530:CDS | 30.0% | |
| TCCACTTTACGTAAAGAAAT+TGG | + | chr2_1:8345030-8345049 | Msa0192530:CDS | 30.0% | |
| TCCAATTTCTTTACGTAAAG+TGG | - | chr2_1:8345034-8345053 | None:intergenic | 30.0% | |
| TGATACATTTCTTATCCTTG+TGG | - | chr2_1:8345078-8345097 | None:intergenic | 30.0% | |
| AAGAAGAATGTAGATGATAC+CGG | + | chr2_1:8345100-8345119 | Msa0192530:CDS | 30.0% | |
| AAGTCACATGATGCTTATAA+AGG | + | chr2_1:8345165-8345184 | Msa0192530:CDS | 30.0% | |
| ACATGATGCTTATAAAGGAT+GGG | + | chr2_1:8345170-8345189 | Msa0192530:CDS | 30.0% | |
| ! | AGCCAACTAATTTTTCTGTT+AGG | - | chr2_1:8345293-8345312 | None:intergenic | 30.0% |
| TATACAGATGTAGTCTTCAT+AGG | + | chr2_1:8345325-8345344 | Msa0192530:CDS | 30.0% | |
| AATTTCTCATTGGGGATTAG+GGG | - | chr2_1:8342364-8342383 | None:intergenic | 35.0% | |
| CAATTTCTCATTGGGGATTA+GGG | - | chr2_1:8342365-8342384 | None:intergenic | 35.0% | |
| TCAATTTCTCATTGGGGATT+AGG | - | chr2_1:8342366-8342385 | None:intergenic | 35.0% | |
| GCAGTATCTCAATTTCTCAT+TGG | - | chr2_1:8342374-8342393 | None:intergenic | 35.0% | |
| GTTACAGTCTTCAACCTTAA+TGG | + | chr2_1:8342398-8342417 | Msa0192530:five_prime_UTR | 35.0% | |
| TTACCTTACTGTTGCCATTA+AGG | - | chr2_1:8342415-8342434 | None:intergenic | 35.0% | |
| AGTTAGTTAGTGACTTAGTG+TGG | + | chr2_1:8342466-8342485 | Msa0192530:intron | 35.0% | |
| TTGAGTTATCAACCTTGTGT+TGG | + | chr2_1:8342585-8342604 | Msa0192530:intron | 35.0% | |
| ATGATCTACATTCCAACACA+AGG | - | chr2_1:8342600-8342619 | None:intergenic | 35.0% | |
| TAGTGAGTTTCTCAAACTGT+TGG | + | chr2_1:8342699-8342718 | Msa0192530:intron | 35.0% | |
| ! | CATGTCATGTTGTCATGTTT+TGG | - | chr2_1:8342764-8342783 | None:intergenic | 35.0% |
| CCAAACTGCTGTGATTATAT+CGG | - | chr2_1:8342812-8342831 | None:intergenic | 35.0% | |
| !!! | AGCCTGTCTTGTTTTGATTT+TGG | + | chr2_1:8342942-8342961 | Msa0192530:intron | 35.0% |
| AGCCAAAATCAAAACAAGAC+AGG | - | chr2_1:8342947-8342966 | None:intergenic | 35.0% | |
| ! | AATCAAAGCCTTTTGTTGAC+TGG | + | chr2_1:8343115-8343134 | Msa0192530:intron | 35.0% |
| AAAGAGAACCAGTCAACAAA+AGG | - | chr2_1:8343126-8343145 | None:intergenic | 35.0% | |
| ATCACTGAATTAAGCATCAC+AGG | - | chr2_1:8343152-8343171 | None:intergenic | 35.0% | |
| CTTTAAATAGGCTAGGTCAT+AGG | + | chr2_1:8343325-8343344 | Msa0192530:intron | 35.0% | |
| CTTCAAACCGTATGAAAGAA+TGG | - | chr2_1:8343496-8343515 | None:intergenic | 35.0% | |
| !!! | ACTTTTTTGCTGAACTGACT+CGG | + | chr2_1:8343771-8343790 | Msa0192530:intron | 35.0% |
| CATCGACAAGAAAATCAGAA+TGG | + | chr2_1:8343807-8343826 | Msa0192530:intron | 35.0% | |
| !! | TTTGAAGATTGAGTTGGAGA+GGG | - | chr2_1:8343866-8343885 | None:intergenic | 35.0% |
| !! | ATTTGAAGATTGAGTTGGAG+AGG | - | chr2_1:8343867-8343886 | None:intergenic | 35.0% |
| AACAAGAGAGAAGAGTGAAT+GGG | - | chr2_1:8343904-8343923 | None:intergenic | 35.0% | |
| AAACAAGAGAGAAGAGTGAA+TGG | - | chr2_1:8343905-8343924 | None:intergenic | 35.0% | |
| TCTTGAGTCTCTACAACATT+GGG | - | chr2_1:8344200-8344219 | None:intergenic | 35.0% | |
| ATCTTGAGTCTCTACAACAT+TGG | - | chr2_1:8344201-8344220 | None:intergenic | 35.0% | |
| AATGTTGTAGAGACTCAAGA+TGG | + | chr2_1:8344200-8344219 | Msa0192530:CDS | 35.0% | |
| !!! | ACCATTTTGAGATGTATGTG+AGG | - | chr2_1:8344258-8344277 | None:intergenic | 35.0% |
| !! | AAATGGTTTTTCTTCTGAGG+TGG | + | chr2_1:8344271-8344290 | Msa0192530:intron | 35.0% |
| !!! | AATGGTTTTTCTTCTGAGGT+GGG | + | chr2_1:8344272-8344291 | Msa0192530:intron | 35.0% |
| !!! | CTCATCAGCTGTTTTTTTGT+GGG | - | chr2_1:8344621-8344640 | None:intergenic | 35.0% |
| !!! | TCTCATCAGCTGTTTTTTTG+TGG | - | chr2_1:8344622-8344641 | None:intergenic | 35.0% |
| ACAACAATATTGCGAGTCTA+AGG | + | chr2_1:8344663-8344682 | Msa0192530:CDS | 35.0% | |
| TTATAAATCACGCCAACTTG+AGG | - | chr2_1:8344698-8344717 | None:intergenic | 35.0% | |
| ! | CAAGTTGGCGTGATTTATAA+TGG | + | chr2_1:8344698-8344717 | Msa0192530:CDS | 35.0% |
| !!! | TTCATCAGCTGCTTTTTTGT+GGG | - | chr2_1:8344765-8344784 | None:intergenic | 35.0% |
| !!! | TTTCATCAGCTGCTTTTTTG+TGG | - | chr2_1:8344766-8344785 | None:intergenic | 35.0% |
| TGAAACTTTGCAGGAAGATA+TGG | + | chr2_1:8344781-8344800 | Msa0192530:CDS | 35.0% | |
| TGAAGGTAATGACAACATTG+CGG | + | chr2_1:8344808-8344827 | Msa0192530:CDS | 35.0% | |
| ! | AAGCATCATGTGACTTTTCT+TGG | - | chr2_1:8345161-8345180 | None:intergenic | 35.0% |
| CACATGATGCTTATAAAGGA+TGG | + | chr2_1:8345169-8345188 | Msa0192530:CDS | 35.0% | |
| TTCTGTTAGAAGATCTACCA+GGG | + | chr2_1:8345216-8345235 | Msa0192530:CDS | 35.0% | |
| GCTGTTTACGATTATTCTGT+TGG | + | chr2_1:8345259-8345278 | Msa0192530:intron | 35.0% | |
| GATGTAGTCTTCATAGGATT+TGG | + | chr2_1:8345331-8345350 | Msa0192530:CDS | 35.0% | |
| CACCAATTTGAACATTCCAA+AGG | - | chr2_1:8345360-8345379 | None:intergenic | 35.0% | |
| ATTTCTCATTGGGGATTAGG+GGG | - | chr2_1:8342363-8342382 | None:intergenic | 40.0% | |
| CAACCTTAATGGCAACAGTA+AGG | + | chr2_1:8342409-8342428 | Msa0192530:five_prime_UTR | 40.0% | |
| CCGATATAATCACAGCAGTT+TGG | + | chr2_1:8342809-8342828 | Msa0192530:intron | 40.0% | |
| GCATCACTAGAATTGAACTG+TGG | + | chr2_1:8342968-8342987 | Msa0192530:intron | 40.0% | |
| CTACCAAGCGCACAAAAAAA+TGG | + | chr2_1:8343063-8343082 | Msa0192530:intron | 40.0% | |
| !!! | TTGCCATTTTTTTGTGCGCT+TGG | - | chr2_1:8343069-8343088 | None:intergenic | 40.0% |
| ACTGTCAAGCCAACCTATTA+AGG | - | chr2_1:8343208-8343227 | None:intergenic | 40.0% | |
| AAATGTTAAGCCGTCCGATA+GGG | - | chr2_1:8343353-8343372 | None:intergenic | 40.0% | |
| AAAATGTTAAGCCGTCCGAT+AGG | - | chr2_1:8343354-8343373 | None:intergenic | 40.0% | |
| ! | TAACATTTTCCCACCCCTTA+TGG | + | chr2_1:8343365-8343384 | Msa0192530:intron | 40.0% |
| TTTGGATAACCATAAGGGGT+GGG | - | chr2_1:8343377-8343396 | None:intergenic | 40.0% | |
| GAAGATCAAAGCTTCCGAAA+CGG | + | chr2_1:8343512-8343531 | Msa0192530:intron | 40.0% | |
| AAAGAAGGGGAATCAGAATC+AGG | - | chr2_1:8343605-8343624 | None:intergenic | 40.0% | |
| !! | TTGAAGATTGAGTTGGAGAG+GGG | - | chr2_1:8343865-8343884 | None:intergenic | 40.0% |
| AAACCTCCAAACCAATGCAA+GGG | + | chr2_1:8344014-8344033 | Msa0192530:CDS | 40.0% | |
| TTGTGACTATTGATGCATGC+AGG | + | chr2_1:8344129-8344148 | Msa0192530:intron | 40.0% | |
| GCCTCACATACATCTCAAAA+TGG | + | chr2_1:8344254-8344273 | Msa0192530:CDS | 40.0% | |
| TGAGAGTCATGTGGCAAAAA+TGG | + | chr2_1:8344401-8344420 | Msa0192530:intron | 40.0% | |
| GTGGAAATCCAACTGAGAAA+CGG | - | chr2_1:8344508-8344527 | None:intergenic | 40.0% | |
| CAGTTGGATTTCCACACAAT+TGG | + | chr2_1:8344513-8344532 | Msa0192530:CDS | 40.0% | |
| AGGAAATGAATGTGAACACG+TGG | + | chr2_1:8344559-8344578 | Msa0192530:CDS | 40.0% | |
| GAACACGTGGATAAAGTTAC+TGG | + | chr2_1:8344572-8344591 | Msa0192530:CDS | 40.0% | |
| GCAATGTTGTCATTACCTTC+AGG | - | chr2_1:8344809-8344828 | None:intergenic | 40.0% | |
| GAAGGTAATGACAACATTGC+GGG | + | chr2_1:8344809-8344828 | Msa0192530:CDS | 40.0% | |
| GTTGTCTCAACAGGAAGATA+TGG | + | chr2_1:8344838-8344857 | Msa0192530:CDS | 40.0% | |
| TCAACAGGAAGATATGGAAC+CGG | + | chr2_1:8344844-8344863 | Msa0192530:CDS | 40.0% | |
| GCAATGTTGTCATTACCTTC+CGG | - | chr2_1:8344809-8344828 | None:intergenic | 40.0% | |
| ! | CCTTGTGGTCACTTGATAAT+TGG | - | chr2_1:8345063-8345082 | None:intergenic | 40.0% |
| CCAATTATCAAGTGACCACA+AGG | + | chr2_1:8345060-8345079 | Msa0192530:CDS | 40.0% | |
| ! | ATACCGGTAACTTGTGTAGT+AGG | + | chr2_1:8345116-8345135 | Msa0192530:CDS | 40.0% |
| ! | TACCGGTAACTTGTGTAGTA+GGG | + | chr2_1:8345117-8345136 | Msa0192530:CDS | 40.0% |
| CTTCTGTTAGAAGATCTACC+AGG | + | chr2_1:8345215-8345234 | Msa0192530:CDS | 40.0% | |
| GTAGTCTTCATAGGATTTGG+AGG | + | chr2_1:8345334-8345353 | Msa0192530:CDS | 40.0% | |
| !! | GGCCTTTGGAATGTTCAAAT+TGG | + | chr2_1:8345355-8345374 | Msa0192530:CDS | 40.0% |
| CTCTCCAACTTCTCCTTATG+CGG | - | chr2_1:8342240-8342259 | None:intergenic | 45.0% | |
| CCATCAAGAAGCAAGTACCT+TGG | - | chr2_1:8342301-8342320 | None:intergenic | 45.0% | |
| ! | CCAAGGTACTTGCTTCTTGA+TGG | + | chr2_1:8342298-8342317 | Msa0192530:five_prime_UTR | 45.0% |
| AATGTTAAGCCGTCCGATAG+GGG | - | chr2_1:8343352-8343371 | None:intergenic | 45.0% | |
| CTTTGGATAACCATAAGGGG+TGG | - | chr2_1:8343378-8343397 | None:intergenic | 45.0% | |
| AGCGCTCACTCACTCAAATT+AGG | + | chr2_1:8343461-8343480 | Msa0192530:intron | 45.0% | |
| GAAACCTCCAAACCAATGCA+AGG | + | chr2_1:8344013-8344032 | Msa0192530:CDS | 45.0% | |
| !! | AAACCCTTGCATTGGTTTGG+AGG | - | chr2_1:8344020-8344039 | None:intergenic | 45.0% |
| !! | GCTAAACCCTTGCATTGGTT+TGG | - | chr2_1:8344023-8344042 | None:intergenic | 45.0% |
| CAAGAGCTAAACCCTTGCAT+TGG | - | chr2_1:8344028-8344047 | None:intergenic | 45.0% | |
| TCTTGCTGGCATTGCTTCAA+TGG | + | chr2_1:8344043-8344062 | Msa0192530:CDS | 45.0% | |
| GGCATCACTGTAATGTTCCA+CGG | + | chr2_1:8344221-8344240 | Msa0192530:CDS | 45.0% | |
| ATTTCTCTTGACCCATCCCT+GGG | + | chr2_1:8344313-8344332 | Msa0192530:intron | 45.0% | |
| AGTACAATCAAACGAGCCCA+GGG | - | chr2_1:8344332-8344351 | None:intergenic | 45.0% | |
| TAGTACAATCAAACGAGCCC+AGG | - | chr2_1:8344333-8344352 | None:intergenic | 45.0% | |
| TGGTTATGCTGAGAGTCATG+TGG | + | chr2_1:8344392-8344411 | Msa0192530:intron | 45.0% | |
| TTATGTCGCCGTTTCTCAGT+TGG | + | chr2_1:8344497-8344516 | Msa0192530:CDS | 45.0% | |
| AGGTTGTCTCTACCTCAAGT+TGG | + | chr2_1:8344683-8344702 | Msa0192530:CDS | 45.0% | |
| AGCAGCTGATGAAACTTTGC+AGG | + | chr2_1:8344772-8344791 | Msa0192530:CDS | 45.0% | |
| CAGGAAGATATGGAACCTGA+AGG | + | chr2_1:8344791-8344810 | Msa0192530:CDS | 45.0% | |
| ! | GGGTCTTAAGTTGTCTCAAC+AGG | + | chr2_1:8344829-8344848 | Msa0192530:CDS | 45.0% |
| !! | TCTTGATTTGTCTCAACCGC+AGG | + | chr2_1:8344889-8344908 | Msa0192530:CDS | 45.0% |
| TTAGAAATCACGGCAACCTG+CGG | - | chr2_1:8344908-8344927 | None:intergenic | 45.0% | |
| CAGGTTGCCGTGATTTCTAA+TGG | + | chr2_1:8344908-8344927 | Msa0192530:CDS | 45.0% | |
| CACCCTACTACACAAGTTAC+CGG | - | chr2_1:8345122-8345141 | None:intergenic | 45.0% | |
| TCATAGGATTTGGAGGCCTT+TGG | + | chr2_1:8345341-8345360 | Msa0192530:CDS | 45.0% | |
| GACACCGCATAAGGAGAAGT+TGG | + | chr2_1:8342233-8342252 | Msa0192530:five_prime_UTR | 50.0% | |
| TCGAACTGTGCGTCTCTCTT+AGG | + | chr2_1:8342914-8342933 | Msa0192530:intron | 50.0% | |
| ! | TGTGCGCTTGGTAGCTCAAT+GGG | - | chr2_1:8343057-8343076 | None:intergenic | 50.0% |
| ! | TTGTGCGCTTGGTAGCTCAA+TGG | - | chr2_1:8343058-8343077 | None:intergenic | 50.0% |
| ATGTTAAGCCGTCCGATAGG+GGG | - | chr2_1:8343351-8343370 | None:intergenic | 50.0% | |
| ! | GGTGGAACGTATTGGGGTTT+TGG | - | chr2_1:8343836-8343855 | None:intergenic | 50.0% |
| !! | TGTGGTGGTGGAACGTATTG+GGG | - | chr2_1:8343842-8343861 | None:intergenic | 50.0% |
| !! | GTGTGGTGGTGGAACGTATT+GGG | - | chr2_1:8343843-8343862 | None:intergenic | 50.0% |
| !! | TGCAAGGGTTTAGCTCTTGC+TGG | + | chr2_1:8344029-8344048 | Msa0192530:CDS | 50.0% |
| ! | GTGAGGCGTTAATCAAACCG+TGG | - | chr2_1:8344241-8344260 | None:intergenic | 50.0% |
| CATTTCTCTTGACCCATCCC+TGG | + | chr2_1:8344312-8344331 | Msa0192530:intron | 50.0% | |
| AATCAAACGAGCCCAGGGAT+GGG | - | chr2_1:8344327-8344346 | None:intergenic | 50.0% | |
| AACAGCTGATGAGACCTCAC+AGG | + | chr2_1:8344628-8344647 | Msa0192530:CDS | 50.0% | |
| GTTACCTTCAGCTTCCTGTG+AGG | - | chr2_1:8344645-8344664 | None:intergenic | 50.0% | |
| CAGGAAGATATGGAACCGGA+AGG | + | chr2_1:8344848-8344867 | Msa0192530:CDS | 50.0% | |
| TTTGATCCTACCCATGAGCC+AGG | + | chr2_1:8344995-8345014 | Msa0192530:CDS | 50.0% | |
| AGCGACTGAGACACCGCATA+AGG | + | chr2_1:8342224-8342243 | Msa0192530:five_prime_UTR | 55.0% | |
| TATGTCGCTCGCTGCATCCA+AGG | + | chr2_1:8342281-8342300 | Msa0192530:five_prime_UTR | 55.0% | |
| GGTAGCTCAATGGGCCCATT+AGG | - | chr2_1:8343048-8343067 | None:intergenic | 55.0% | |
| CTAGGTCATAGGCCCCCTAT+CGG | + | chr2_1:8343336-8343355 | Msa0192530:intron | 55.0% | |
| !! | GGTGTGGTGGTGGAACGTAT+TGG | - | chr2_1:8343844-8343863 | None:intergenic | 55.0% |
| !! | GATTGAGTTGGAGAGGGGTG+TGG | - | chr2_1:8343860-8343879 | None:intergenic | 55.0% |
| CAATCAAACGAGCCCAGGGA+TGG | - | chr2_1:8344328-8344347 | None:intergenic | 55.0% | |
| GAGACCTCACAGGAAGCTGA+AGG | + | chr2_1:8344638-8344657 | Msa0192530:CDS | 55.0% | |
| CCTAACACTGCCTGGCTCAT+GGG | - | chr2_1:8345008-8345027 | None:intergenic | 55.0% | |
| ACCTAACACTGCCTGGCTCA+TGG | - | chr2_1:8345009-8345028 | None:intergenic | 55.0% | |
| AGTGGAGACCTAACACTGCC+TGG | - | chr2_1:8345016-8345035 | None:intergenic | 55.0% | |
| GTCATAGGCCCCCTATCGGA+CGG | + | chr2_1:8343340-8343359 | Msa0192530:intron | 60.0% | |
| ! | TGAGTTGGAGAGGGGTGTGG+TGG | - | chr2_1:8343857-8343876 | None:intergenic | 60.0% |
| ACACTGCCTGGCTCATGGGT+AGG | - | chr2_1:8345004-8345023 | None:intergenic | 60.0% | |
| CCCATGAGCCAGGCAGTGTT+AGG | + | chr2_1:8345005-8345024 | Msa0192530:CDS | 60.0% | |
| ! | GTTGGAGAGGGGTGTGGTGG+TGG | - | chr2_1:8343854-8343873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8342217 | 8345401 | 8342217 | ID=Msa0192530;Name=Msa0192530 |
| chr2_1 | mRNA | 8342217 | 8345401 | 8342217 | ID=Msa0192530-mRNA-1;Parent=Msa0192530;Name=Msa0192530-mRNA-1;_AED=0.30;_eAED=0.30;_QI=241|0.83|0.71|1|0.66|0.57|7|0|368 |
| chr2_1 | exon | 8342217 | 8342430 | 8342217 | ID=Msa0192530-mRNA-1:exon:3832;Parent=Msa0192530-mRNA-1 |
| chr2_1 | exon | 8343516 | 8343533 | 8343516 | ID=Msa0192530-mRNA-1:exon:3833;Parent=Msa0192530-mRNA-1 |
| chr2_1 | exon | 8343817 | 8343894 | 8343817 | ID=Msa0192530-mRNA-1:exon:3834;Parent=Msa0192530-mRNA-1 |
| chr2_1 | exon | 8343987 | 8344066 | 8343987 | ID=Msa0192530-mRNA-1:exon:3835;Parent=Msa0192530-mRNA-1 |
| chr2_1 | exon | 8344151 | 8344289 | 8344151 | ID=Msa0192530-mRNA-1:exon:3836;Parent=Msa0192530-mRNA-1 |
| chr2_1 | exon | 8344497 | 8345237 | 8344497 | ID=Msa0192530-mRNA-1:exon:3837;Parent=Msa0192530-mRNA-1 |
| chr2_1 | exon | 8345324 | 8345401 | 8345324 | ID=Msa0192530-mRNA-1:exon:3838;Parent=Msa0192530-mRNA-1 |
| chr2_1 | five_prime_UTR | 8342217 | 8342430 | 8342217 | ID=Msa0192530-mRNA-1:five_prime_utr;Parent=Msa0192530-mRNA-1 |
| chr2_1 | five_prime_UTR | 8343516 | 8343533 | 8343516 | ID=Msa0192530-mRNA-1:five_prime_utr;Parent=Msa0192530-mRNA-1 |
| chr2_1 | five_prime_UTR | 8343817 | 8343825 | 8343817 | ID=Msa0192530-mRNA-1:five_prime_utr;Parent=Msa0192530-mRNA-1 |
| chr2_1 | CDS | 8343826 | 8343894 | 8343826 | ID=Msa0192530-mRNA-1:cds;Parent=Msa0192530-mRNA-1 |
| chr2_1 | CDS | 8343987 | 8344066 | 8343987 | ID=Msa0192530-mRNA-1:cds;Parent=Msa0192530-mRNA-1 |
| chr2_1 | CDS | 8344151 | 8344289 | 8344151 | ID=Msa0192530-mRNA-1:cds;Parent=Msa0192530-mRNA-1 |
| chr2_1 | CDS | 8344497 | 8345237 | 8344497 | ID=Msa0192530-mRNA-1:cds;Parent=Msa0192530-mRNA-1 |
| chr2_1 | CDS | 8345324 | 8345401 | 8345324 | ID=Msa0192530-mRNA-1:cds;Parent=Msa0192530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
