Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272670 | XP_013448301.1 | 88.439 | 346 | 33 | 3 | 1 | 344 | 1 | 341 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272670 | sp|Q8RWD7|EMB74_ARATH | 38.053 | 113 | 63 | 3 | 22 | 132 | 64 | 171 | 4.01e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272670 | A0A072TZN4 | 88.439 | 346 | 33 | 3 | 1 | 344 | 1 | 341 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0272670 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192530 | Msa0272670 | 0.870016 | 2.005256e-66 | -8.615850e-47 |
| Msa0192580 | Msa0272670 | 0.822084 | 2.862503e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272670 | MtrunA17_Chr7g0231611 | 88.439 | 346 | 33 | 3 | 1 | 344 | 1 | 341 | 0.0 | 614 |
| Msa0272670 | MtrunA17_Chr5g0416851 | 88.728 | 346 | 32 | 3 | 1 | 344 | 1 | 341 | 0.0 | 604 |
| Msa0272670 | MtrunA17_Chr2g0282701 | 85.200 | 250 | 17 | 2 | 96 | 344 | 42 | 272 | 1.51e-141 | 402 |
| Msa0272670 | MtrunA17_Chr1g0182611 | 34.351 | 131 | 73 | 5 | 1 | 122 | 1 | 127 | 1.98e-15 | 77.4 |
| Msa0272670 | MtrunA17_Chr1g0182621 | 36.134 | 119 | 62 | 4 | 22 | 134 | 28 | 138 | 5.68e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272670 | AT1G58210.1 | 38.053 | 113 | 63 | 3 | 22 | 132 | 64 | 171 | 4.08e-17 | 81.3 |
Find 99 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTCATTGGGGATTA+GGG | 0.201892 | 2_3:+4208339 | None:intergenic |
| TCCACTTTATGTAAAGAAAT+TGG | 0.202989 | 2_3:-4205671 | Msa0272670:CDS |
| TCAATTTCTCATTGGGGATT+AGG | 0.219132 | 2_3:+4208338 | None:intergenic |
| GTTACAGTCTTCAACCTTAA+TGG | 0.221203 | 2_3:-4208303 | Msa0272670:five_prime_UTR |
| CCTTGTGGTCACTTGATAAT+TGG | 0.239096 | 2_3:+4205641 | None:intergenic |
| GTGTGGTGGTGGAACGTATT+GGG | 0.250160 | 2_3:+4206861 | None:intergenic |
| TTACCTTACTGTTGCCATTA+AGG | 0.253130 | 2_3:+4208289 | None:intergenic |
| GGTGGAACGTATTGGGGTTT+TGG | 0.271264 | 2_3:+4206868 | None:intergenic |
| GATGTAGTCTTCATAGGATT+TGG | 0.279770 | 2_3:-4205370 | Msa0272670:CDS |
| TCCAATTTCTTTACATAAAG+TGG | 0.301497 | 2_3:+4205670 | None:intergenic |
| CCAAGGTACTTGCTTCTTGA+TGG | 0.302718 | 2_3:-4208403 | Msa0272670:five_prime_UTR |
| GTGATTTATAATGGTGAAAA+TGG | 0.304153 | 2_3:-4205994 | Msa0272670:CDS |
| CAGTTGGATTTCCACACAAT+TGG | 0.315477 | 2_3:-4206188 | Msa0272670:CDS |
| CAGTATCTCAATTTCTCATT+GGG | 0.329990 | 2_3:+4208331 | None:intergenic |
| GTGATTTCTAATGGTGAAAA+TGG | 0.338731 | 2_3:-4205784 | Msa0272670:CDS |
| GCCTCACATACATCTCAAAA+TGG | 0.350427 | 2_3:-4206447 | Msa0272670:CDS |
| GTTGGAGAGGGGTGTGGTGG+TGG | 0.351038 | 2_3:+4206850 | None:intergenic |
| TGTGGTGGTGGAACGTATTG+GGG | 0.352785 | 2_3:+4206862 | None:intergenic |
| TCATAGGATTTGGAGGCCTT+TGG | 0.354277 | 2_3:-4205360 | Msa0272670:CDS |
| CAAGTTGGCGTGATTTATAA+TGG | 0.357302 | 2_3:-4206003 | Msa0272670:CDS |
| GGCCTTTGGAATGTTCAAAT+TGG | 0.361861 | 2_3:-4205346 | Msa0272670:CDS |
| TGCAAGGGTTTAGCTCTTGC+TGG | 0.372413 | 2_3:-4206672 | Msa0272670:CDS |
| GGTGTGGTGGTGGAACGTAT+TGG | 0.373524 | 2_3:+4206860 | None:intergenic |
| AATTATTCAGCTCATAGTTC+AGG | 0.376079 | 2_3:-4206162 | Msa0272670:CDS |
| GCTAAACCCTTGCATTGGTT+TGG | 0.379957 | 2_3:+4206681 | None:intergenic |
| AGCAGCTGATGAAACTTTGC+AGG | 0.381501 | 2_3:-4205929 | Msa0272670:CDS |
| GCAGTATCTCAATTTCTCAT+TGG | 0.384354 | 2_3:+4208330 | None:intergenic |
| TATACAGATGTAGTCTTCAT+AGG | 0.386534 | 2_3:-4205376 | Msa0272670:CDS |
| AAGTCACATGATGCTTATAA+AGG | 0.387819 | 2_3:-4205536 | Msa0272670:CDS |
| TGAAACTTTGCAGGAAGATA+TGG | 0.392140 | 2_3:-4205920 | Msa0272670:CDS |
| TCTTGCTGGCATTGCTTCAA+TGG | 0.402134 | 2_3:-4206658 | Msa0272670:CDS |
| ATACCGGTAACTTGTGTAGT+AGG | 0.407561 | 2_3:-4205585 | Msa0272670:CDS |
| ACAACAATATTGCGAGTCTA+AGG | 0.409478 | 2_3:-4206038 | Msa0272670:CDS |
| CAGGTTGCCGTGATTTCTAA+TGG | 0.414513 | 2_3:-4205793 | Msa0272670:CDS |
| GAACGCGTGGATAAAGTTAC+TGG | 0.426422 | 2_3:-4206129 | Msa0272670:CDS |
| CACCCTACTACACAAGTTAC+CGG | 0.426920 | 2_3:+4205582 | None:intergenic |
| GGGTCTTAAGTTGTCTCAAC+AGG | 0.433791 | 2_3:-4205872 | Msa0272670:CDS |
| CCCATGAGCCAGGCAGTGTT+AGG | 0.434002 | 2_3:-4205696 | Msa0272670:CDS |
| TTTGAAGATTGAGTTGGAGA+GGG | 0.438182 | 2_3:+4206838 | None:intergenic |
| AAACCCTTGCATTGGTTTGG+AGG | 0.442882 | 2_3:+4206684 | None:intergenic |
| ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 2_3:+4206503 | None:intergenic |
| GCAATGTTGTCATTACCTTC+AGG | 0.449864 | 2_3:+4205895 | None:intergenic |
| GAAGGTAATGACAACATTGC+GGG | 0.450334 | 2_3:-4205892 | Msa0272670:CDS |
| GTTGTCTCAACAGGAAGATA+TGG | 0.457391 | 2_3:-4205863 | Msa0272670:CDS |
| CACATGATGCTTATAAAGGA+TGG | 0.459002 | 2_3:-4205532 | Msa0272670:CDS |
| TTTAGATTTGAAGATTGAGT+TGG | 0.459049 | 2_3:+4206832 | None:intergenic |
| TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 2_3:+4206504 | None:intergenic |
| AGAATTGAGAATTACCGTTT+CGG | 0.465704 | 2_3:+4207175 | None:intergenic |
| CTTCTGTTAGAAGATCTACC+AGG | 0.478887 | 2_3:-4205486 | Msa0272670:CDS |
| ACCTAACACTGCCTGGCTCA+TGG | 0.480484 | 2_3:+4205695 | None:intergenic |
| GCAATGTTGTCATTACCTTC+CGG | 0.481010 | 2_3:+4205838 | None:intergenic |
| TGAGTTGGAGAGGGGTGTGG+TGG | 0.489080 | 2_3:+4206847 | None:intergenic |
| ATTTGAAGATTGAGTTGGAG+AGG | 0.496033 | 2_3:+4206837 | None:intergenic |
| TTATGTCGCCGTTTCTCAGT+TGG | 0.496930 | 2_3:-4206204 | Msa0272670:CDS |
| TGATACATTTCTTATCCTTG+TGG | 0.504839 | 2_3:+4205626 | None:intergenic |
| GATTGAGTTGGAGAGGGGTG+TGG | 0.509260 | 2_3:+4206844 | None:intergenic |
| GTAGTCTTCATAGGATTTGG+AGG | 0.510282 | 2_3:-4205367 | Msa0272670:CDS |
| TTGAAGATTGAGTTGGAGAG+GGG | 0.510736 | 2_3:+4206839 | None:intergenic |
| CAACCTTAATGGCAACAGTA+AGG | 0.514637 | 2_3:-4208292 | Msa0272670:intron |
| ATTTCTCATTGGGGATTAGG+GGG | 0.521839 | 2_3:+4208341 | None:intergenic |
| TCTTGATTTGTCTCAACCGC+AGG | 0.523290 | 2_3:-4205812 | Msa0272670:CDS |
| AATTTCTCATTGGGGATTAG+GGG | 0.525370 | 2_3:+4208340 | None:intergenic |
| CCTAACACTGCCTGGCTCAT+GGG | 0.526114 | 2_3:+4205696 | None:intergenic |
| CAAGAGCTAAACCCTTGCAT+TGG | 0.528805 | 2_3:+4206676 | None:intergenic |
| AGCGACTGAGACACCGCATA+AGG | 0.539808 | 2_3:-4208477 | Msa0272670:five_prime_UTR |
| TCAACAGGAAGATATGGAAC+CGG | 0.540435 | 2_3:-4205857 | Msa0272670:CDS |
| TTTGATCCTACCCATGAGCC+AGG | 0.541769 | 2_3:-4205706 | Msa0272670:CDS |
| GACACCGCATAAGGAGAAGT+TGG | 0.541978 | 2_3:-4208468 | Msa0272670:five_prime_UTR |
| AAGAAGAATGTAGATGATAC+CGG | 0.549093 | 2_3:-4205601 | Msa0272670:CDS |
| AGTGGAGACCTAACACTGCC+TGG | 0.549411 | 2_3:+4205688 | None:intergenic |
| GTGGAAATCCAACTGAGAAA+CGG | 0.556021 | 2_3:+4206196 | None:intergenic |
| TATGTCGCTCGCTGCATCCA+AGG | 0.559906 | 2_3:-4208420 | Msa0272670:five_prime_UTR |
| GAAGATCAAAGCTTCCGAAA+CGG | 0.561192 | 2_3:-4207189 | Msa0272670:intron |
| ACATGATGCTTATAAAGGAT+GGG | 0.566978 | 2_3:-4205531 | Msa0272670:CDS |
| CTCTCCAACTTCTCCTTATG+CGG | 0.570299 | 2_3:+4208464 | None:intergenic |
| CTTATGGAATATGCTTCTTG+AGG | 0.573377 | 2_3:+4205321 | None:intergenic |
| GGCATCACTGTAATGTTCCA+CGG | 0.577101 | 2_3:-4206480 | Msa0272670:CDS |
| CCATCAAGAAGCAAGTACCT+TGG | 0.579568 | 2_3:+4208403 | None:intergenic |
| TTATAAATCACGCCAACTTG+AGG | 0.591187 | 2_3:+4206006 | None:intergenic |
| CATCGACAAGAAAATCAGAA+TGG | 0.597549 | 2_3:-4206894 | Msa0272670:intron |
| CACCAATTTGAACATTCCAA+AGG | 0.601473 | 2_3:+4205344 | None:intergenic |
| AGTATCTCAATTTCTCATTG+GGG | 0.603616 | 2_3:+4208332 | None:intergenic |
| TACCGGTAACTTGTGTAGTA+GGG | 0.605302 | 2_3:-4205584 | Msa0272670:CDS |
| GAAACCTCCAAACCAATGCA+AGG | 0.605866 | 2_3:-4206688 | Msa0272670:CDS |
| ACACTGCCTGGCTCATGGGT+AGG | 0.608929 | 2_3:+4205700 | None:intergenic |
| CCAATTATCAAGTGACCACA+AGG | 0.618748 | 2_3:-4205641 | Msa0272670:CDS |
| CAGGAAGATATGGAACCTGA+AGG | 0.622434 | 2_3:-4205910 | Msa0272670:CDS |
| AGGAAATGAATGTGAACGCG+TGG | 0.622967 | 2_3:-4206142 | Msa0272670:CDS |
| AAACCTCCAAACCAATGCAA+GGG | 0.637222 | 2_3:-4206687 | Msa0272670:CDS |
| AGGTTGTCTCAACCTCAAGT+TGG | 0.639538 | 2_3:-4206018 | Msa0272670:CDS |
| GTTACCTTCAGCTTCCTGTG+AGG | 0.642766 | 2_3:+4206059 | None:intergenic |
| GAGACCTCACAGGAAGCTGA+AGG | 0.643008 | 2_3:-4206063 | Msa0272670:CDS |
| AACAGCTGATGAGACCTCAC+AGG | 0.646895 | 2_3:-4206073 | Msa0272670:CDS |
| AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 2_3:-4206501 | Msa0272670:CDS |
| CAGGAAGATATGGAACCGGA+AGG | 0.662654 | 2_3:-4205853 | Msa0272670:CDS |
| TTCTGTTAGAAGATCTACCA+GGG | 0.673391 | 2_3:-4205485 | Msa0272670:intron |
| TTAGAAATCACGGCAACCTG+CGG | 0.679371 | 2_3:+4205796 | None:intergenic |
| TGAAGGTAATGACAACATTG+CGG | 0.680073 | 2_3:-4205893 | Msa0272670:CDS |
| GTGAGGCGTTAATCAAACCG+TGG | 0.715788 | 2_3:+4206463 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATTTAATTAAATAAGTC+AGG | + | chr2_3:4206363-4206382 | None:intergenic | 15.0% |
| !! | TTGTTTCAATTCTTAACATA+TGG | - | chr2_3:4205546-4205565 | Msa0272670:CDS | 20.0% |
| !! | ATGAAATAAGTATCATCATT+TGG | + | chr2_3:4205747-4205766 | None:intergenic | 20.0% |
| !! | AATCATGCATTTAGAAAAAT+AGG | + | chr2_3:4206103-4206122 | None:intergenic | 20.0% |
| !! | TAATTAAATAAGTCAGGTTA+AGG | + | chr2_3:4206357-4206376 | None:intergenic | 20.0% |
| !! | ATCAATTGAAATAAAAGACA+TGG | + | chr2_3:4206667-4206686 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTTTCACTTTGT+AGG | - | chr2_3:4207177-4207196 | Msa0272670:intron | 20.0% |
| !! | TTTCTAATTGGTTATTTGTT+TGG | - | chr2_3:4207200-4207219 | Msa0272670:intron | 20.0% |
| !! | TTCTAATTGGTTATTTGTTT+GGG | - | chr2_3:4207201-4207220 | Msa0272670:intron | 20.0% |
| !! | TTGAATATAATTAGTGTGTT+TGG | - | chr2_3:4207477-4207496 | Msa0272670:intron | 20.0% |
| !!! | TTTTTTATAATTTAGTACCC+TGG | + | chr2_3:4208341-4208360 | None:intergenic | 20.0% |
| ! | ACAAAATTACTGATGAAGTT+TGG | + | chr2_3:4205670-4205689 | None:intergenic | 25.0% |
| ! | TAAGTAATCAAAGCCTTAAT+AGG | - | chr2_3:4206297-4206316 | Msa0272670:intron | 25.0% |
| !! | TTTTCTTTGGATAACCATAA+GGG | + | chr2_3:4206487-4206506 | None:intergenic | 25.0% |
| !! | CTTTCTTTCTTTCTTTTCTT+TGG | + | chr2_3:4206500-4206519 | None:intergenic | 25.0% |
| ! | AAAGACGAAAATAACAAAAG+CGG | + | chr2_3:4206541-4206560 | None:intergenic | 25.0% |
| !! | AAAATTGAAGAAAGTATGTG+AGG | + | chr2_3:4206762-4206781 | None:intergenic | 25.0% |
| ! | TTTAGATTTGAAGATTGAGT+TGG | + | chr2_3:4206977-4206996 | None:intergenic | 25.0% |
| ! | AGAGAAATGAGAAAGAAAAA+GGG | + | chr2_3:4207406-4207425 | None:intergenic | 25.0% |
| ! | AAGAGAAATGAGAAAGAAAA+AGG | + | chr2_3:4207407-4207426 | None:intergenic | 25.0% |
| !! | GAATAATTTTTCCAATTGTG+TGG | + | chr2_3:4207632-4207651 | None:intergenic | 25.0% |
| ! | GTGATTTATAATGGTGAAAA+TGG | - | chr2_3:4207812-4207831 | Msa0272670:intron | 25.0% |
| !! | ATTTTCACCATTAGAAATCA+CGG | + | chr2_3:4208023-4208042 | None:intergenic | 25.0% |
| ! | TCCACTTTATGTAAAGAAAT+TGG | - | chr2_3:4208135-4208154 | Msa0272670:intron | 25.0% |
| ! | TCCAATTTCTTTACATAAAG+TGG | + | chr2_3:4208139-4208158 | None:intergenic | 25.0% |
| ! | ATCCTAACAGAAAAATTAGT+TGG | - | chr2_3:4208393-4208412 | Msa0272670:five_prime_UTR | 25.0% |
| AGTATCTCAATTTCTCATTG+GGG | + | chr2_3:4205477-4205496 | None:intergenic | 30.0% | |
| CAGTATCTCAATTTCTCATT+GGG | + | chr2_3:4205478-4205497 | None:intergenic | 30.0% | |
| ! | ATGTCATGTTGTCATGTTTT+GGG | + | chr2_3:4205868-4205887 | None:intergenic | 30.0% |
| !!! | TGCTTGTCTTGTTTTGATTT+TGG | - | chr2_3:4205955-4205974 | Msa0272670:CDS | 30.0% |
| !!! | TTGTCTTGTTTTGATTTTGG+AGG | - | chr2_3:4205958-4205977 | Msa0272670:CDS | 30.0% |
| ! | TGTTTGATTTATGAGCCTAA+TGG | - | chr2_3:4206135-4206154 | Msa0272670:CDS | 30.0% |
| ! | GTTTGATTTATGAGCCTAAT+GGG | - | chr2_3:4206136-4206155 | Msa0272670:CDS | 30.0% |
| TGATTACTTAAAGTCAGAGA+GGG | + | chr2_3:4206205-4206224 | None:intergenic | 30.0% | |
| TTGATTACTTAAAGTCAGAG+AGG | + | chr2_3:4206206-4206225 | None:intergenic | 30.0% | |
| TAATCAAAGCCTTAATAGGT+TGG | - | chr2_3:4206301-4206320 | Msa0272670:intron | 30.0% | |
| GACCAAGCTAAACTTTAAAT+AGG | - | chr2_3:4206418-4206437 | Msa0272670:intron | 30.0% | |
| ! | AGCCTATTTAAAGTTTAGCT+TGG | + | chr2_3:4206423-4206442 | None:intergenic | 30.0% |
| AGCTAAACTTTAAATAGGCT+AGG | - | chr2_3:4206423-4206442 | Msa0272670:intron | 30.0% | |
| TTTCTTTGGATAACCATAAG+GGG | + | chr2_3:4206486-4206505 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTGGATAACCATA+AGG | + | chr2_3:4206488-4206507 | None:intergenic | 30.0% |
| AAGACGAAAATAACAAAAGC+GGG | + | chr2_3:4206540-4206559 | None:intergenic | 30.0% | |
| TTCTCTTCCATTCTTTCATA+CGG | - | chr2_3:4206591-4206610 | Msa0272670:intron | 30.0% | |
| AGAATTGAGAATTACCGTTT+CGG | + | chr2_3:4206634-4206653 | None:intergenic | 30.0% | |
| ATAAGCGCATAAAAAAGAAG+GGG | + | chr2_3:4206723-4206742 | None:intergenic | 30.0% | |
| GATAAGCGCATAAAAAAGAA+GGG | + | chr2_3:4206724-4206743 | None:intergenic | 30.0% | |
| TGATAAGCGCATAAAAAAGA+AGG | + | chr2_3:4206725-4206744 | None:intergenic | 30.0% | |
| TCTCATCATATCATGTCTAT+TGG | - | chr2_3:4206803-4206822 | Msa0272670:intron | 30.0% | |
| AATGGCAACAAATGAGATAA+TGG | + | chr2_3:4206834-4206853 | None:intergenic | 30.0% | |
| GAGTAAGAAACTTAGAGAAA+TGG | + | chr2_3:4206852-4206871 | None:intergenic | 30.0% | |
| ATCTGCAAAAATAAGCAAGT+AGG | + | chr2_3:4207074-4207093 | None:intergenic | 30.0% | |
| ! | TGCAGATTTTCTTACATGAA+TGG | - | chr2_3:4207087-4207106 | Msa0272670:intron | 30.0% |
| ! | AGATTTTCTTACATGAATGG+TGG | - | chr2_3:4207090-4207109 | Msa0272670:intron | 30.0% |
| TCACTTTGTAGGTTTCTAAT+TGG | - | chr2_3:4207188-4207207 | Msa0272670:intron | 30.0% | |
| ! | TCAAAATGGTTTTTCTTCTG+AGG | - | chr2_3:4207373-4207392 | Msa0272670:intron | 30.0% |
| AATTATTCAGCTCATAGTTC+AGG | - | chr2_3:4207644-4207663 | Msa0272670:intron | 30.0% | |
| GTGATTTCTAATGGTGAAAA+TGG | - | chr2_3:4208022-4208041 | Msa0272670:intron | 30.0% | |
| TGATACATTTCTTATCCTTG+TGG | + | chr2_3:4208183-4208202 | None:intergenic | 30.0% | |
| AAGAAGAATGTAGATGATAC+CGG | - | chr2_3:4208205-4208224 | Msa0272670:intron | 30.0% | |
| AAGTCACATGATGCTTATAA+AGG | - | chr2_3:4208270-4208289 | Msa0272670:intron | 30.0% | |
| ACATGATGCTTATAAAGGAT+GGG | - | chr2_3:4208275-4208294 | Msa0272670:intron | 30.0% | |
| ! | AGCCAACTAATTTTTCTGTT+AGG | + | chr2_3:4208398-4208417 | None:intergenic | 30.0% |
| TATACAGATGTAGTCTTCAT+AGG | - | chr2_3:4208430-4208449 | Msa0272670:five_prime_UTR | 30.0% | |
| AATTTCTCATTGGGGATTAG+GGG | + | chr2_3:4205469-4205488 | None:intergenic | 35.0% | |
| CAATTTCTCATTGGGGATTA+GGG | + | chr2_3:4205470-4205489 | None:intergenic | 35.0% | |
| TCAATTTCTCATTGGGGATT+AGG | + | chr2_3:4205471-4205490 | None:intergenic | 35.0% | |
| GCAGTATCTCAATTTCTCAT+TGG | + | chr2_3:4205479-4205498 | None:intergenic | 35.0% | |
| GTTACAGTCTTCAACCTTAA+TGG | - | chr2_3:4205503-4205522 | Msa0272670:CDS | 35.0% | |
| TTACCTTACTGTTGCCATTA+AGG | + | chr2_3:4205520-4205539 | None:intergenic | 35.0% | |
| AGTTAGTTAGTGACTTAGTG+TGG | - | chr2_3:4205571-4205590 | Msa0272670:CDS | 35.0% | |
| TTGAGTTATCAACCTTGTGT+TGG | - | chr2_3:4205690-4205709 | Msa0272670:CDS | 35.0% | |
| ATGATCTACATTCCAACACA+AGG | + | chr2_3:4205705-4205724 | None:intergenic | 35.0% | |
| TAGTGAGTTTCTCAAACTGT+TGG | - | chr2_3:4205804-4205823 | Msa0272670:CDS | 35.0% | |
| ! | CATGTCATGTTGTCATGTTT+TGG | + | chr2_3:4205869-4205888 | None:intergenic | 35.0% |
| CCAAACTGCTGTGATTATAT+CGG | + | chr2_3:4205917-4205936 | None:intergenic | 35.0% | |
| !!! | AGCCTGTCTTGTTTTGATTT+TGG | - | chr2_3:4206047-4206066 | Msa0272670:CDS | 35.0% |
| AGCCAAAATCAAAACAAGAC+AGG | + | chr2_3:4206052-4206071 | None:intergenic | 35.0% | |
| ! | AATCAAAGCCTTTTGTTGAC+TGG | - | chr2_3:4206220-4206239 | Msa0272670:intron | 35.0% |
| AAAGAGAACCAGTCAACAAA+AGG | + | chr2_3:4206231-4206250 | None:intergenic | 35.0% | |
| ATCACTGAATTAAGCATCAC+AGG | + | chr2_3:4206257-4206276 | None:intergenic | 35.0% | |
| CTTTAAATAGGCTAGGTCAT+AGG | - | chr2_3:4206430-4206449 | Msa0272670:intron | 35.0% | |
| CTTCAAACCGTATGAAAGAA+TGG | + | chr2_3:4206601-4206620 | None:intergenic | 35.0% | |
| !!! | ACTTTTTTGCTGAACTGACT+CGG | - | chr2_3:4206876-4206895 | Msa0272670:CDS | 35.0% |
| CATCGACAAGAAAATCAGAA+TGG | - | chr2_3:4206912-4206931 | Msa0272670:intron | 35.0% | |
| !! | TTTGAAGATTGAGTTGGAGA+GGG | + | chr2_3:4206971-4206990 | None:intergenic | 35.0% |
| !! | ATTTGAAGATTGAGTTGGAG+AGG | + | chr2_3:4206972-4206991 | None:intergenic | 35.0% |
| AACAAGAGAGAAGAGTGAAT+GGG | + | chr2_3:4207009-4207028 | None:intergenic | 35.0% | |
| AAACAAGAGAGAAGAGTGAA+TGG | + | chr2_3:4207010-4207029 | None:intergenic | 35.0% | |
| TCTTGAGTCTCTACAACATT+GGG | + | chr2_3:4207305-4207324 | None:intergenic | 35.0% | |
| ATCTTGAGTCTCTACAACAT+TGG | + | chr2_3:4207306-4207325 | None:intergenic | 35.0% | |
| AATGTTGTAGAGACTCAAGA+TGG | - | chr2_3:4207305-4207324 | Msa0272670:intron | 35.0% | |
| !!! | ACCATTTTGAGATGTATGTG+AGG | + | chr2_3:4207363-4207382 | None:intergenic | 35.0% |
| !! | AAATGGTTTTTCTTCTGAGG+TGG | - | chr2_3:4207376-4207395 | Msa0272670:intron | 35.0% |
| !!! | AATGGTTTTTCTTCTGAGGT+GGG | - | chr2_3:4207377-4207396 | Msa0272670:intron | 35.0% |
| !!! | CTCATCAGCTGTTTTTTTGT+GGG | + | chr2_3:4207726-4207745 | None:intergenic | 35.0% |
| !!! | TCTCATCAGCTGTTTTTTTG+TGG | + | chr2_3:4207727-4207746 | None:intergenic | 35.0% |
| ACAACAATATTGCGAGTCTA+AGG | - | chr2_3:4207768-4207787 | Msa0272670:intron | 35.0% | |
| TTATAAATCACGCCAACTTG+AGG | + | chr2_3:4207803-4207822 | None:intergenic | 35.0% | |
| ! | CAAGTTGGCGTGATTTATAA+TGG | - | chr2_3:4207803-4207822 | Msa0272670:intron | 35.0% |
| !!! | TTCATCAGCTGCTTTTTTGT+GGG | + | chr2_3:4207870-4207889 | None:intergenic | 35.0% |
| !!! | TTTCATCAGCTGCTTTTTTG+TGG | + | chr2_3:4207871-4207890 | None:intergenic | 35.0% |
| TGAAACTTTGCAGGAAGATA+TGG | - | chr2_3:4207886-4207905 | Msa0272670:intron | 35.0% | |
| TGAAGGTAATGACAACATTG+CGG | - | chr2_3:4207913-4207932 | Msa0272670:intron | 35.0% | |
| ! | AAGCATCATGTGACTTTTCT+TGG | + | chr2_3:4208266-4208285 | None:intergenic | 35.0% |
| CACATGATGCTTATAAAGGA+TGG | - | chr2_3:4208274-4208293 | Msa0272670:intron | 35.0% | |
| TTCTGTTAGAAGATCTACCA+GGG | - | chr2_3:4208321-4208340 | Msa0272670:five_prime_UTR | 35.0% | |
| GCTGTTTACGATTATTCTGT+TGG | - | chr2_3:4208364-4208383 | Msa0272670:five_prime_UTR | 35.0% | |
| GATGTAGTCTTCATAGGATT+TGG | - | chr2_3:4208436-4208455 | Msa0272670:five_prime_UTR | 35.0% | |
| CACCAATTTGAACATTCCAA+AGG | + | chr2_3:4208465-4208484 | None:intergenic | 35.0% | |
| ATTTCTCATTGGGGATTAGG+GGG | + | chr2_3:4205468-4205487 | None:intergenic | 40.0% | |
| CAACCTTAATGGCAACAGTA+AGG | - | chr2_3:4205514-4205533 | Msa0272670:CDS | 40.0% | |
| CCGATATAATCACAGCAGTT+TGG | - | chr2_3:4205914-4205933 | Msa0272670:CDS | 40.0% | |
| GCATCACTAGAATTGAACTG+TGG | - | chr2_3:4206073-4206092 | Msa0272670:CDS | 40.0% | |
| CTACCAAGCGCACAAAAAAA+TGG | - | chr2_3:4206168-4206187 | Msa0272670:CDS | 40.0% | |
| !!! | TTGCCATTTTTTTGTGCGCT+TGG | + | chr2_3:4206174-4206193 | None:intergenic | 40.0% |
| ACTGTCAAGCCAACCTATTA+AGG | + | chr2_3:4206313-4206332 | None:intergenic | 40.0% | |
| AAATGTTAAGCCGTCCGATA+GGG | + | chr2_3:4206458-4206477 | None:intergenic | 40.0% | |
| AAAATGTTAAGCCGTCCGAT+AGG | + | chr2_3:4206459-4206478 | None:intergenic | 40.0% | |
| ! | TAACATTTTCCCACCCCTTA+TGG | - | chr2_3:4206470-4206489 | Msa0272670:CDS | 40.0% |
| TTTGGATAACCATAAGGGGT+GGG | + | chr2_3:4206482-4206501 | None:intergenic | 40.0% | |
| GAAGATCAAAGCTTCCGAAA+CGG | - | chr2_3:4206617-4206636 | Msa0272670:intron | 40.0% | |
| AAAGAAGGGGAATCAGAATC+AGG | + | chr2_3:4206710-4206729 | None:intergenic | 40.0% | |
| !! | TTGAAGATTGAGTTGGAGAG+GGG | + | chr2_3:4206970-4206989 | None:intergenic | 40.0% |
| AAACCTCCAAACCAATGCAA+GGG | - | chr2_3:4207119-4207138 | Msa0272670:intron | 40.0% | |
| TTGTGACTATTGATGCATGC+AGG | - | chr2_3:4207234-4207253 | Msa0272670:intron | 40.0% | |
| GCCTCACATACATCTCAAAA+TGG | - | chr2_3:4207359-4207378 | Msa0272670:intron | 40.0% | |
| TGAGAGTCATGTGGCAAAAA+TGG | - | chr2_3:4207506-4207525 | Msa0272670:intron | 40.0% | |
| GTGGAAATCCAACTGAGAAA+CGG | + | chr2_3:4207613-4207632 | None:intergenic | 40.0% | |
| CAGTTGGATTTCCACACAAT+TGG | - | chr2_3:4207618-4207637 | Msa0272670:intron | 40.0% | |
| GCAATGTTGTCATTACCTTC+AGG | + | chr2_3:4207914-4207933 | None:intergenic | 40.0% | |
| GAAGGTAATGACAACATTGC+GGG | - | chr2_3:4207914-4207933 | Msa0272670:intron | 40.0% | |
| GTTGTCTCAACAGGAAGATA+TGG | - | chr2_3:4207943-4207962 | Msa0272670:intron | 40.0% | |
| TCAACAGGAAGATATGGAAC+CGG | - | chr2_3:4207949-4207968 | Msa0272670:intron | 40.0% | |
| GCAATGTTGTCATTACCTTC+CGG | + | chr2_3:4207914-4207933 | None:intergenic | 40.0% | |
| ! | CCTTGTGGTCACTTGATAAT+TGG | + | chr2_3:4208168-4208187 | None:intergenic | 40.0% |
| CCAATTATCAAGTGACCACA+AGG | - | chr2_3:4208165-4208184 | Msa0272670:intron | 40.0% | |
| ! | ATACCGGTAACTTGTGTAGT+AGG | - | chr2_3:4208221-4208240 | Msa0272670:intron | 40.0% |
| ! | TACCGGTAACTTGTGTAGTA+GGG | - | chr2_3:4208222-4208241 | Msa0272670:intron | 40.0% |
| CTTCTGTTAGAAGATCTACC+AGG | - | chr2_3:4208320-4208339 | Msa0272670:five_prime_UTR | 40.0% | |
| GTAGTCTTCATAGGATTTGG+AGG | - | chr2_3:4208439-4208458 | Msa0272670:five_prime_UTR | 40.0% | |
| !! | GGCCTTTGGAATGTTCAAAT+TGG | - | chr2_3:4208460-4208479 | Msa0272670:five_prime_UTR | 40.0% |
| CTCTCCAACTTCTCCTTATG+CGG | + | chr2_3:4205345-4205364 | None:intergenic | 45.0% | |
| CCATCAAGAAGCAAGTACCT+TGG | + | chr2_3:4205406-4205425 | None:intergenic | 45.0% | |
| ! | CCAAGGTACTTGCTTCTTGA+TGG | - | chr2_3:4205403-4205422 | Msa0272670:intron | 45.0% |
| AATGTTAAGCCGTCCGATAG+GGG | + | chr2_3:4206457-4206476 | None:intergenic | 45.0% | |
| CTTTGGATAACCATAAGGGG+TGG | + | chr2_3:4206483-4206502 | None:intergenic | 45.0% | |
| AGCGCTCACTCACTCAAATT+AGG | - | chr2_3:4206566-4206585 | Msa0272670:intron | 45.0% | |
| GAAACCTCCAAACCAATGCA+AGG | - | chr2_3:4207118-4207137 | Msa0272670:intron | 45.0% | |
| !! | AAACCCTTGCATTGGTTTGG+AGG | + | chr2_3:4207125-4207144 | None:intergenic | 45.0% |
| !! | GCTAAACCCTTGCATTGGTT+TGG | + | chr2_3:4207128-4207147 | None:intergenic | 45.0% |
| CAAGAGCTAAACCCTTGCAT+TGG | + | chr2_3:4207133-4207152 | None:intergenic | 45.0% | |
| TCTTGCTGGCATTGCTTCAA+TGG | - | chr2_3:4207148-4207167 | Msa0272670:intron | 45.0% | |
| GGCATCACTGTAATGTTCCA+CGG | - | chr2_3:4207326-4207345 | Msa0272670:intron | 45.0% | |
| ATTTCTCTTGACCCATCCCT+GGG | - | chr2_3:4207418-4207437 | Msa0272670:intron | 45.0% | |
| AGTACAATCAAACGAGCCCA+GGG | + | chr2_3:4207437-4207456 | None:intergenic | 45.0% | |
| TAGTACAATCAAACGAGCCC+AGG | + | chr2_3:4207438-4207457 | None:intergenic | 45.0% | |
| TGGTTATGCTGAGAGTCATG+TGG | - | chr2_3:4207497-4207516 | Msa0272670:intron | 45.0% | |
| TTATGTCGCCGTTTCTCAGT+TGG | - | chr2_3:4207602-4207621 | Msa0272670:intron | 45.0% | |
| AGGAAATGAATGTGAACGCG+TGG | - | chr2_3:4207664-4207683 | Msa0272670:intron | 45.0% | |
| GAACGCGTGGATAAAGTTAC+TGG | - | chr2_3:4207677-4207696 | Msa0272670:intron | 45.0% | |
| AGGTTGTCTCAACCTCAAGT+TGG | - | chr2_3:4207788-4207807 | Msa0272670:intron | 45.0% | |
| AGCAGCTGATGAAACTTTGC+AGG | - | chr2_3:4207877-4207896 | Msa0272670:intron | 45.0% | |
| CAGGAAGATATGGAACCTGA+AGG | - | chr2_3:4207896-4207915 | Msa0272670:intron | 45.0% | |
| ! | GGGTCTTAAGTTGTCTCAAC+AGG | - | chr2_3:4207934-4207953 | Msa0272670:intron | 45.0% |
| !! | TCTTGATTTGTCTCAACCGC+AGG | - | chr2_3:4207994-4208013 | Msa0272670:intron | 45.0% |
| TTAGAAATCACGGCAACCTG+CGG | + | chr2_3:4208013-4208032 | None:intergenic | 45.0% | |
| CAGGTTGCCGTGATTTCTAA+TGG | - | chr2_3:4208013-4208032 | Msa0272670:intron | 45.0% | |
| CACCCTACTACACAAGTTAC+CGG | + | chr2_3:4208227-4208246 | None:intergenic | 45.0% | |
| TCATAGGATTTGGAGGCCTT+TGG | - | chr2_3:4208446-4208465 | Msa0272670:five_prime_UTR | 45.0% | |
| GACACCGCATAAGGAGAAGT+TGG | - | chr2_3:4205338-4205357 | Msa0272670:CDS | 50.0% | |
| TCGAACTGTGCGTCTCTCTT+AGG | - | chr2_3:4206019-4206038 | Msa0272670:CDS | 50.0% | |
| ! | TGTGCGCTTGGTAGCTCAAT+GGG | + | chr2_3:4206162-4206181 | None:intergenic | 50.0% |
| ! | TTGTGCGCTTGGTAGCTCAA+TGG | + | chr2_3:4206163-4206182 | None:intergenic | 50.0% |
| ATGTTAAGCCGTCCGATAGG+GGG | + | chr2_3:4206456-4206475 | None:intergenic | 50.0% | |
| ! | GGTGGAACGTATTGGGGTTT+TGG | + | chr2_3:4206941-4206960 | None:intergenic | 50.0% |
| !! | TGTGGTGGTGGAACGTATTG+GGG | + | chr2_3:4206947-4206966 | None:intergenic | 50.0% |
| !! | GTGTGGTGGTGGAACGTATT+GGG | + | chr2_3:4206948-4206967 | None:intergenic | 50.0% |
| !! | TGCAAGGGTTTAGCTCTTGC+TGG | - | chr2_3:4207134-4207153 | Msa0272670:intron | 50.0% |
| ! | GTGAGGCGTTAATCAAACCG+TGG | + | chr2_3:4207346-4207365 | None:intergenic | 50.0% |
| CATTTCTCTTGACCCATCCC+TGG | - | chr2_3:4207417-4207436 | Msa0272670:intron | 50.0% | |
| AATCAAACGAGCCCAGGGAT+GGG | + | chr2_3:4207432-4207451 | None:intergenic | 50.0% | |
| AACAGCTGATGAGACCTCAC+AGG | - | chr2_3:4207733-4207752 | Msa0272670:intron | 50.0% | |
| GTTACCTTCAGCTTCCTGTG+AGG | + | chr2_3:4207750-4207769 | None:intergenic | 50.0% | |
| CAGGAAGATATGGAACCGGA+AGG | - | chr2_3:4207953-4207972 | Msa0272670:intron | 50.0% | |
| TTTGATCCTACCCATGAGCC+AGG | - | chr2_3:4208100-4208119 | Msa0272670:intron | 50.0% | |
| AGCGACTGAGACACCGCATA+AGG | - | chr2_3:4205329-4205348 | Msa0272670:CDS | 55.0% | |
| TATGTCGCTCGCTGCATCCA+AGG | - | chr2_3:4205386-4205405 | Msa0272670:intron | 55.0% | |
| GGTAGCTCAATGGGCCCATT+AGG | + | chr2_3:4206153-4206172 | None:intergenic | 55.0% | |
| CTAGGTCATAGGCCCCCTAT+CGG | - | chr2_3:4206441-4206460 | Msa0272670:CDS | 55.0% | |
| !! | GGTGTGGTGGTGGAACGTAT+TGG | + | chr2_3:4206949-4206968 | None:intergenic | 55.0% |
| !! | GATTGAGTTGGAGAGGGGTG+TGG | + | chr2_3:4206965-4206984 | None:intergenic | 55.0% |
| CAATCAAACGAGCCCAGGGA+TGG | + | chr2_3:4207433-4207452 | None:intergenic | 55.0% | |
| GAGACCTCACAGGAAGCTGA+AGG | - | chr2_3:4207743-4207762 | Msa0272670:intron | 55.0% | |
| CCTAACACTGCCTGGCTCAT+GGG | + | chr2_3:4208113-4208132 | None:intergenic | 55.0% | |
| ACCTAACACTGCCTGGCTCA+TGG | + | chr2_3:4208114-4208133 | None:intergenic | 55.0% | |
| AGTGGAGACCTAACACTGCC+TGG | + | chr2_3:4208121-4208140 | None:intergenic | 55.0% | |
| GTCATAGGCCCCCTATCGGA+CGG | - | chr2_3:4206445-4206464 | Msa0272670:CDS | 60.0% | |
| ! | TGAGTTGGAGAGGGGTGTGG+TGG | + | chr2_3:4206962-4206981 | None:intergenic | 60.0% |
| ACACTGCCTGGCTCATGGGT+AGG | + | chr2_3:4208109-4208128 | None:intergenic | 60.0% | |
| CCCATGAGCCAGGCAGTGTT+AGG | - | chr2_3:4208110-4208129 | Msa0272670:intron | 60.0% | |
| ! | GTTGGAGAGGGGTGTGGTGG+TGG | + | chr2_3:4206959-4206978 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4205322 | 4208506 | 4205322 | ID=Msa0272670;Name=Msa0272670 |
| chr2_3 | mRNA | 4205322 | 4208506 | 4205322 | ID=Msa0272670-mRNA-1;Parent=Msa0272670;Name=Msa0272670-mRNA-1;_AED=0.30;_eAED=0.30;_QI=241|0.83|0.71|1|0.66|0.57|7|0|368 |
| chr2_3 | exon | 4205322 | 4205399 | 4205322 | ID=Msa0272670-mRNA-1:exon:2161;Parent=Msa0272670-mRNA-1 |
| chr2_3 | exon | 4205486 | 4206226 | 4205486 | ID=Msa0272670-mRNA-1:exon:2160;Parent=Msa0272670-mRNA-1 |
| chr2_3 | exon | 4206434 | 4206572 | 4206434 | ID=Msa0272670-mRNA-1:exon:2159;Parent=Msa0272670-mRNA-1 |
| chr2_3 | exon | 4206657 | 4206736 | 4206657 | ID=Msa0272670-mRNA-1:exon:2158;Parent=Msa0272670-mRNA-1 |
| chr2_3 | exon | 4206829 | 4206906 | 4206829 | ID=Msa0272670-mRNA-1:exon:2157;Parent=Msa0272670-mRNA-1 |
| chr2_3 | exon | 4207190 | 4207207 | 4207190 | ID=Msa0272670-mRNA-1:exon:2156;Parent=Msa0272670-mRNA-1 |
| chr2_3 | exon | 4208293 | 4208506 | 4208293 | ID=Msa0272670-mRNA-1:exon:2155;Parent=Msa0272670-mRNA-1 |
| chr2_3 | five_prime_UTR | 4208293 | 4208506 | 4208293 | ID=Msa0272670-mRNA-1:five_prime_utr;Parent=Msa0272670-mRNA-1 |
| chr2_3 | five_prime_UTR | 4207190 | 4207207 | 4207190 | ID=Msa0272670-mRNA-1:five_prime_utr;Parent=Msa0272670-mRNA-1 |
| chr2_3 | five_prime_UTR | 4206898 | 4206906 | 4206898 | ID=Msa0272670-mRNA-1:five_prime_utr;Parent=Msa0272670-mRNA-1 |
| chr2_3 | CDS | 4206829 | 4206897 | 4206829 | ID=Msa0272670-mRNA-1:cds;Parent=Msa0272670-mRNA-1 |
| chr2_3 | CDS | 4206657 | 4206736 | 4206657 | ID=Msa0272670-mRNA-1:cds;Parent=Msa0272670-mRNA-1 |
| chr2_3 | CDS | 4206434 | 4206572 | 4206434 | ID=Msa0272670-mRNA-1:cds;Parent=Msa0272670-mRNA-1 |
| chr2_3 | CDS | 4205486 | 4206226 | 4205486 | ID=Msa0272670-mRNA-1:cds;Parent=Msa0272670-mRNA-1 |
| chr2_3 | CDS | 4205322 | 4205399 | 4205322 | ID=Msa0272670-mRNA-1:cds;Parent=Msa0272670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
