Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192580 | XP_013448301.1 | 88.150 | 346 | 34 | 3 | 1 | 344 | 1 | 341 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192580 | sp|Q8RWD7|EMB74_ARATH | 37.168 | 113 | 64 | 3 | 22 | 132 | 64 | 171 | 1.28e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192580 | A0A072TZN4 | 88.150 | 346 | 34 | 3 | 1 | 344 | 1 | 341 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0192580 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192580 | Msa0272670 | 0.822084 | 2.862503e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192580 | MtrunA17_Chr7g0231611 | 88.150 | 346 | 34 | 3 | 1 | 344 | 1 | 341 | 0.0 | 612 |
| Msa0192580 | MtrunA17_Chr5g0416851 | 88.439 | 346 | 33 | 3 | 1 | 344 | 1 | 341 | 0.0 | 602 |
| Msa0192580 | MtrunA17_Chr2g0282701 | 85.600 | 250 | 16 | 2 | 96 | 344 | 42 | 272 | 7.79e-143 | 406 |
| Msa0192580 | MtrunA17_Chr1g0182611 | 32.394 | 142 | 82 | 6 | 1 | 132 | 1 | 138 | 1.24e-14 | 75.1 |
| Msa0192580 | MtrunA17_Chr1g0182621 | 34.454 | 119 | 64 | 4 | 22 | 134 | 28 | 138 | 1.86e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192580 | AT1G58210.1 | 37.168 | 113 | 64 | 3 | 22 | 132 | 64 | 171 | 1.30e-16 | 79.7 |
Find 98 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTCATTGGGGATTA+GGG | 0.201892 | 2_1:+8378765 | None:intergenic |
| TCAATTTCTCATTGGGGATT+AGG | 0.219132 | 2_1:+8378764 | None:intergenic |
| GTTACAGTCTTCAACCTTAA+TGG | 0.221203 | 2_1:-8378729 | Msa0192580:five_prime_UTR |
| TCCACTTTACGTAAAGAAAT+TGG | 0.221596 | 2_1:-8376101 | Msa0192580:CDS |
| CCTTGTGGTCACTTGATAAT+TGG | 0.239096 | 2_1:+8376071 | None:intergenic |
| GTGTGGTGGTGGAACGTATT+GGG | 0.250160 | 2_1:+8377291 | None:intergenic |
| TTACCTTACTGTTGCCATTA+AGG | 0.253130 | 2_1:+8378715 | None:intergenic |
| GGTGGAACGTATTGGGGTTT+TGG | 0.271264 | 2_1:+8377298 | None:intergenic |
| GATGTAGTCTTCATAGGATT+TGG | 0.279770 | 2_1:-8375800 | Msa0192580:CDS |
| TCCAATTTCTTTACGTAAAG+TGG | 0.301497 | 2_1:+8376100 | None:intergenic |
| CCAAGGTACTTGCTTCTTGA+TGG | 0.302718 | 2_1:-8378829 | Msa0192580:five_prime_UTR |
| GTGATTTATAATGGTGAAAA+TGG | 0.304153 | 2_1:-8376424 | Msa0192580:CDS |
| CAGTTGGATTTCCACACAAT+TGG | 0.315477 | 2_1:-8376618 | Msa0192580:CDS |
| CAGTATCTCAATTTCTCATT+GGG | 0.329990 | 2_1:+8378757 | None:intergenic |
| GTGATTTCTAATGGTGAAAA+TGG | 0.338731 | 2_1:-8376214 | Msa0192580:CDS |
| GCCTCACATACATCTCAAAA+TGG | 0.350427 | 2_1:-8376877 | Msa0192580:CDS |
| GTTGGAGAGGGGTGTGGTGG+TGG | 0.351038 | 2_1:+8377280 | None:intergenic |
| TGTGGTGGTGGAACGTATTG+GGG | 0.352785 | 2_1:+8377292 | None:intergenic |
| TCATAGGATTTGGAGGCCTT+TGG | 0.354277 | 2_1:-8375790 | Msa0192580:CDS |
| CAAGTTGGCGTGATTTATAA+TGG | 0.357302 | 2_1:-8376433 | Msa0192580:CDS |
| GGCCTTTGGAATGTTCAAAT+TGG | 0.361861 | 2_1:-8375776 | Msa0192580:CDS |
| GGTGTGGTGGTGGAACGTAT+TGG | 0.373524 | 2_1:+8377290 | None:intergenic |
| AATTATTCAGCTCATAGTTC+AGG | 0.376079 | 2_1:-8376592 | Msa0192580:CDS |
| GCTAAACCCTTGCATTGGTT+TGG | 0.379957 | 2_1:+8377111 | None:intergenic |
| AGCAGCTGATGAAACTTTGC+AGG | 0.381501 | 2_1:-8376359 | Msa0192580:CDS |
| GCAGTATCTCAATTTCTCAT+TGG | 0.384354 | 2_1:+8378756 | None:intergenic |
| TATACAGATGTAGTCTTCAT+AGG | 0.386534 | 2_1:-8375806 | Msa0192580:CDS |
| AAGTCACATGATGCTTATAA+AGG | 0.387819 | 2_1:-8375966 | Msa0192580:CDS |
| TCTTGCTAGCATTGCTTCAA+TGG | 0.389042 | 2_1:-8377088 | Msa0192580:CDS |
| TGAAACTTTGCAGGAAGATA+TGG | 0.392140 | 2_1:-8376350 | Msa0192580:CDS |
| ATACCGGTAACTTGTGTAGT+AGG | 0.407561 | 2_1:-8376015 | Msa0192580:CDS |
| ACAACAATATTGCGAGTCTA+AGG | 0.409478 | 2_1:-8376468 | Msa0192580:CDS |
| CAGGTTGCCGTGATTTCTAA+TGG | 0.414513 | 2_1:-8376223 | Msa0192580:CDS |
| CACCCTACTACACAAGTTAC+CGG | 0.426920 | 2_1:+8376012 | None:intergenic |
| GGGTCTTAAGTTGTCTCAAC+AGG | 0.433791 | 2_1:-8376302 | Msa0192580:CDS |
| CCCATGAGCCAGGCAGTGTT+AGG | 0.434002 | 2_1:-8376126 | Msa0192580:CDS |
| TTTGAAGATTGAGTTGGAGA+GGG | 0.438182 | 2_1:+8377268 | None:intergenic |
| GAACACGTGGATAAAGTTAC+TGG | 0.442596 | 2_1:-8376559 | Msa0192580:CDS |
| AAACCCTTGCATTGGTTTGG+AGG | 0.442882 | 2_1:+8377114 | None:intergenic |
| ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 2_1:+8376933 | None:intergenic |
| GCAATGTTGTCATTACCTTC+AGG | 0.449864 | 2_1:+8376325 | None:intergenic |
| GAAGGTAATGACAACATTGC+GGG | 0.450334 | 2_1:-8376322 | Msa0192580:CDS |
| GTTGTCTCAACAGGAAGATA+TGG | 0.457391 | 2_1:-8376293 | Msa0192580:CDS |
| CACATGATGCTTATAAAGGA+TGG | 0.459002 | 2_1:-8375962 | Msa0192580:CDS |
| TTTAGATTTGAAGATTGAGT+TGG | 0.459049 | 2_1:+8377262 | None:intergenic |
| TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 2_1:+8376934 | None:intergenic |
| AGAATTGAGAATTACCGTTT+CGG | 0.465704 | 2_1:+8377605 | None:intergenic |
| CTTCTGTTAGAAGATCTACC+AGG | 0.478887 | 2_1:-8375916 | Msa0192580:CDS |
| ACCTAACACTGCCTGGCTCA+TGG | 0.480484 | 2_1:+8376125 | None:intergenic |
| GCAATGTTGTCATTACCTTC+CGG | 0.481010 | 2_1:+8376268 | None:intergenic |
| TGAGTTGGAGAGGGGTGTGG+TGG | 0.489080 | 2_1:+8377277 | None:intergenic |
| ATTTGAAGATTGAGTTGGAG+AGG | 0.496033 | 2_1:+8377267 | None:intergenic |
| TTATGTCGCCGTTTCTCAGT+TGG | 0.496930 | 2_1:-8376634 | Msa0192580:CDS |
| TGATACATTTCTTATCCTTG+TGG | 0.504839 | 2_1:+8376056 | None:intergenic |
| GATTGAGTTGGAGAGGGGTG+TGG | 0.509260 | 2_1:+8377274 | None:intergenic |
| GTAGTCTTCATAGGATTTGG+AGG | 0.510282 | 2_1:-8375797 | Msa0192580:CDS |
| TTGAAGATTGAGTTGGAGAG+GGG | 0.510736 | 2_1:+8377269 | None:intergenic |
| CAACCTTAATGGCAACAGTA+AGG | 0.514637 | 2_1:-8378718 | Msa0192580:intron |
| ATTTCTCATTGGGGATTAGG+GGG | 0.521839 | 2_1:+8378767 | None:intergenic |
| TCTTGATTTGTCTCAACCGC+AGG | 0.523290 | 2_1:-8376242 | Msa0192580:CDS |
| AATTTCTCATTGGGGATTAG+GGG | 0.525370 | 2_1:+8378766 | None:intergenic |
| CCTAACACTGCCTGGCTCAT+GGG | 0.526114 | 2_1:+8376126 | None:intergenic |
| CAAGAGCTAAACCCTTGCAT+TGG | 0.526632 | 2_1:+8377106 | None:intergenic |
| AGCGACTGAGACACCGCATA+AGG | 0.539808 | 2_1:-8378903 | Msa0192580:five_prime_UTR |
| TCAACAGGAAGATATGGAAC+CGG | 0.540435 | 2_1:-8376287 | Msa0192580:CDS |
| TTTGATCCTACCCATGAGCC+AGG | 0.541769 | 2_1:-8376136 | Msa0192580:CDS |
| GACACCGCATAAGGAGAAGT+TGG | 0.541978 | 2_1:-8378894 | Msa0192580:five_prime_UTR |
| AAGAAGAATGTAGATGATAC+CGG | 0.549093 | 2_1:-8376031 | Msa0192580:CDS |
| AGTGGAGACCTAACACTGCC+TGG | 0.549411 | 2_1:+8376118 | None:intergenic |
| GTGGAAATCCAACTGAGAAA+CGG | 0.556021 | 2_1:+8376626 | None:intergenic |
| TATGTCGCTCGCTGCATCCA+AGG | 0.559906 | 2_1:-8378846 | Msa0192580:five_prime_UTR |
| GAAGATCAAAGCTTCCGAAA+CGG | 0.561192 | 2_1:-8377619 | Msa0192580:intron |
| ACATGATGCTTATAAAGGAT+GGG | 0.566978 | 2_1:-8375961 | Msa0192580:CDS |
| CTCTCCAACTTCTCCTTATG+CGG | 0.570299 | 2_1:+8378890 | None:intergenic |
| CTTATGGAATATGCTTCTTG+AGG | 0.573377 | 2_1:+8375751 | None:intergenic |
| GGCATCACTGTAATGTTCCA+CGG | 0.577101 | 2_1:-8376910 | Msa0192580:CDS |
| CCATCAAGAAGCAAGTACCT+TGG | 0.579568 | 2_1:+8378829 | None:intergenic |
| TTATAAATCACGCCAACTTG+AGG | 0.591187 | 2_1:+8376436 | None:intergenic |
| CATCGACAAGAAAATCAGAA+TGG | 0.597549 | 2_1:-8377324 | Msa0192580:intron |
| CACCAATTTGAACATTCCAA+AGG | 0.601473 | 2_1:+8375774 | None:intergenic |
| AGTATCTCAATTTCTCATTG+GGG | 0.603616 | 2_1:+8378758 | None:intergenic |
| TACCGGTAACTTGTGTAGTA+GGG | 0.605302 | 2_1:-8376014 | Msa0192580:CDS |
| GAAACCTCCAAACCAATGCA+AGG | 0.605866 | 2_1:-8377118 | Msa0192580:CDS |
| ACACTGCCTGGCTCATGGGT+AGG | 0.608929 | 2_1:+8376130 | None:intergenic |
| CCAATTATCAAGTGACCACA+AGG | 0.618748 | 2_1:-8376071 | Msa0192580:CDS |
| CAGGAAGATATGGAACCTGA+AGG | 0.622434 | 2_1:-8376340 | Msa0192580:CDS |
| AAACCTCCAAACCAATGCAA+GGG | 0.637222 | 2_1:-8377117 | Msa0192580:CDS |
| AGGTTGTCTCAACCTCAAGT+TGG | 0.639538 | 2_1:-8376448 | Msa0192580:CDS |
| GTTACCTTCAGCTTCCTGTG+AGG | 0.642766 | 2_1:+8376489 | None:intergenic |
| GAGACCTCACAGGAAGCTGA+AGG | 0.643008 | 2_1:-8376493 | Msa0192580:CDS |
| AACAGCTGATGAGACCTCAC+AGG | 0.646895 | 2_1:-8376503 | Msa0192580:CDS |
| AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 2_1:-8376931 | Msa0192580:CDS |
| CAGGAAGATATGGAACCGGA+AGG | 0.662654 | 2_1:-8376283 | Msa0192580:CDS |
| AGGAAATGAATGTGAACACG+TGG | 0.663886 | 2_1:-8376572 | Msa0192580:CDS |
| TTCTGTTAGAAGATCTACCA+GGG | 0.673391 | 2_1:-8375915 | Msa0192580:intron |
| TTAGAAATCACGGCAACCTG+CGG | 0.679371 | 2_1:+8376226 | None:intergenic |
| TGAAGGTAATGACAACATTG+CGG | 0.680073 | 2_1:-8376323 | Msa0192580:CDS |
| GTGAGGCGTTAATCAAACCG+TGG | 0.715788 | 2_1:+8376893 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATTTAATTAAATAAGTC+AGG | + | chr2_1:8376789-8376808 | None:intergenic | 15.0% |
| !! | TTGTTTCAATTCTTAACATA+TGG | - | chr2_1:8375976-8375995 | Msa0192580:CDS | 20.0% |
| !! | ATGAAATAAGTATCATCATT+TGG | + | chr2_1:8376173-8376192 | None:intergenic | 20.0% |
| !! | AATCATGCATTTAGAAAAAT+AGG | + | chr2_1:8376529-8376548 | None:intergenic | 20.0% |
| !! | TAATTAAATAAGTCAGGTTA+AGG | + | chr2_1:8376783-8376802 | None:intergenic | 20.0% |
| !! | ATCAATTGAAATAAAAGACA+TGG | + | chr2_1:8377093-8377112 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTTTCACTTTGT+AGG | - | chr2_1:8377603-8377622 | Msa0192580:intron | 20.0% |
| !! | TTTCTAATTGGTTATTTGTT+TGG | - | chr2_1:8377626-8377645 | Msa0192580:intron | 20.0% |
| !! | TTCTAATTGGTTATTTGTTT+GGG | - | chr2_1:8377627-8377646 | Msa0192580:intron | 20.0% |
| !! | TTGAATATAATTAGTGTGTT+TGG | - | chr2_1:8377903-8377922 | Msa0192580:intron | 20.0% |
| !!! | TTTTTTATAATTTAGTACCC+TGG | + | chr2_1:8378767-8378786 | None:intergenic | 20.0% |
| ! | ACAAAATTACTGATGAAGTT+TGG | + | chr2_1:8376096-8376115 | None:intergenic | 25.0% |
| ! | TAAGTAATCAAAGCCTTAAT+AGG | - | chr2_1:8376723-8376742 | Msa0192580:intron | 25.0% |
| !! | TTTTCTTTGGATAACCATAA+GGG | + | chr2_1:8376913-8376932 | None:intergenic | 25.0% |
| !! | CTTTCTTTCTTTCTTTTCTT+TGG | + | chr2_1:8376926-8376945 | None:intergenic | 25.0% |
| ! | AAAGACGAAAATAACAAAAG+CGG | + | chr2_1:8376967-8376986 | None:intergenic | 25.0% |
| !! | AAAATTGAAGAAAGTATGTG+AGG | + | chr2_1:8377188-8377207 | None:intergenic | 25.0% |
| ! | TTTAGATTTGAAGATTGAGT+TGG | + | chr2_1:8377403-8377422 | None:intergenic | 25.0% |
| ! | AGAGAAATGAGAAAGAAAAA+GGG | + | chr2_1:8377832-8377851 | None:intergenic | 25.0% |
| ! | AAGAGAAATGAGAAAGAAAA+AGG | + | chr2_1:8377833-8377852 | None:intergenic | 25.0% |
| !! | GAATAATTTTTCCAATTGTG+TGG | + | chr2_1:8378058-8378077 | None:intergenic | 25.0% |
| ! | GTGATTTATAATGGTGAAAA+TGG | - | chr2_1:8378238-8378257 | Msa0192580:intron | 25.0% |
| !! | ATTTTCACCATTAGAAATCA+CGG | + | chr2_1:8378449-8378468 | None:intergenic | 25.0% |
| ! | ATCCTAACAGAAAAATTAGT+TGG | - | chr2_1:8378819-8378838 | Msa0192580:five_prime_UTR | 25.0% |
| AGTATCTCAATTTCTCATTG+GGG | + | chr2_1:8375907-8375926 | None:intergenic | 30.0% | |
| CAGTATCTCAATTTCTCATT+GGG | + | chr2_1:8375908-8375927 | None:intergenic | 30.0% | |
| ! | ATGTCATGTTGTCATGTTTT+GGG | + | chr2_1:8376294-8376313 | None:intergenic | 30.0% |
| !!! | TGCTTGTCTTGTTTTGATTT+TGG | - | chr2_1:8376381-8376400 | Msa0192580:CDS | 30.0% |
| !!! | TTGTCTTGTTTTGATTTTGG+AGG | - | chr2_1:8376384-8376403 | Msa0192580:CDS | 30.0% |
| ! | TGTTTGATTTATGAGCCTAA+TGG | - | chr2_1:8376561-8376580 | Msa0192580:CDS | 30.0% |
| ! | GTTTGATTTATGAGCCTAAT+GGG | - | chr2_1:8376562-8376581 | Msa0192580:CDS | 30.0% |
| TGATTACTTAAAGTCAGAGA+GGG | + | chr2_1:8376631-8376650 | None:intergenic | 30.0% | |
| TTGATTACTTAAAGTCAGAG+AGG | + | chr2_1:8376632-8376651 | None:intergenic | 30.0% | |
| TAATCAAAGCCTTAATAGGT+TGG | - | chr2_1:8376727-8376746 | Msa0192580:intron | 30.0% | |
| GACCAAGCTAAACTTTAAAT+AGG | - | chr2_1:8376844-8376863 | Msa0192580:intron | 30.0% | |
| ! | AGCCTATTTAAAGTTTAGCT+TGG | + | chr2_1:8376849-8376868 | None:intergenic | 30.0% |
| AGCTAAACTTTAAATAGGCT+AGG | - | chr2_1:8376849-8376868 | Msa0192580:intron | 30.0% | |
| TTTCTTTGGATAACCATAAG+GGG | + | chr2_1:8376912-8376931 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTGGATAACCATA+AGG | + | chr2_1:8376914-8376933 | None:intergenic | 30.0% |
| AAGACGAAAATAACAAAAGC+GGG | + | chr2_1:8376966-8376985 | None:intergenic | 30.0% | |
| TTCTCTTCCATTCTTTCATA+CGG | - | chr2_1:8377017-8377036 | Msa0192580:intron | 30.0% | |
| AGAATTGAGAATTACCGTTT+CGG | + | chr2_1:8377060-8377079 | None:intergenic | 30.0% | |
| ATAAGCGCATAAAAAAGAAG+GGG | + | chr2_1:8377149-8377168 | None:intergenic | 30.0% | |
| GATAAGCGCATAAAAAAGAA+GGG | + | chr2_1:8377150-8377169 | None:intergenic | 30.0% | |
| TGATAAGCGCATAAAAAAGA+AGG | + | chr2_1:8377151-8377170 | None:intergenic | 30.0% | |
| TCTCATCATATCATGTCTAT+TGG | - | chr2_1:8377229-8377248 | Msa0192580:intron | 30.0% | |
| AATGGCAACAAATGAGATAA+TGG | + | chr2_1:8377260-8377279 | None:intergenic | 30.0% | |
| GAGTAAGAAACTTAGAGAAA+TGG | + | chr2_1:8377278-8377297 | None:intergenic | 30.0% | |
| ATCTGCAAAAATAAGCAAGT+AGG | + | chr2_1:8377500-8377519 | None:intergenic | 30.0% | |
| ! | TGCAGATTTTCTTACATGAA+TGG | - | chr2_1:8377513-8377532 | Msa0192580:intron | 30.0% |
| ! | AGATTTTCTTACATGAATGG+TGG | - | chr2_1:8377516-8377535 | Msa0192580:intron | 30.0% |
| TCACTTTGTAGGTTTCTAAT+TGG | - | chr2_1:8377614-8377633 | Msa0192580:intron | 30.0% | |
| ! | TCAAAATGGTTTTTCTTCTG+AGG | - | chr2_1:8377799-8377818 | Msa0192580:intron | 30.0% |
| AATTATTCAGCTCATAGTTC+AGG | - | chr2_1:8378070-8378089 | Msa0192580:intron | 30.0% | |
| GTGATTTCTAATGGTGAAAA+TGG | - | chr2_1:8378448-8378467 | Msa0192580:intron | 30.0% | |
| TCCACTTTACGTAAAGAAAT+TGG | - | chr2_1:8378561-8378580 | Msa0192580:intron | 30.0% | |
| TCCAATTTCTTTACGTAAAG+TGG | + | chr2_1:8378565-8378584 | None:intergenic | 30.0% | |
| TGATACATTTCTTATCCTTG+TGG | + | chr2_1:8378609-8378628 | None:intergenic | 30.0% | |
| AAGAAGAATGTAGATGATAC+CGG | - | chr2_1:8378631-8378650 | Msa0192580:intron | 30.0% | |
| AAGTCACATGATGCTTATAA+AGG | - | chr2_1:8378696-8378715 | Msa0192580:intron | 30.0% | |
| ACATGATGCTTATAAAGGAT+GGG | - | chr2_1:8378701-8378720 | Msa0192580:intron | 30.0% | |
| ! | AGCCAACTAATTTTTCTGTT+AGG | + | chr2_1:8378824-8378843 | None:intergenic | 30.0% |
| TATACAGATGTAGTCTTCAT+AGG | - | chr2_1:8378856-8378875 | Msa0192580:five_prime_UTR | 30.0% | |
| AATTTCTCATTGGGGATTAG+GGG | + | chr2_1:8375899-8375918 | None:intergenic | 35.0% | |
| CAATTTCTCATTGGGGATTA+GGG | + | chr2_1:8375900-8375919 | None:intergenic | 35.0% | |
| TCAATTTCTCATTGGGGATT+AGG | + | chr2_1:8375901-8375920 | None:intergenic | 35.0% | |
| GCAGTATCTCAATTTCTCAT+TGG | + | chr2_1:8375909-8375928 | None:intergenic | 35.0% | |
| GTTACAGTCTTCAACCTTAA+TGG | - | chr2_1:8375933-8375952 | Msa0192580:CDS | 35.0% | |
| TTACCTTACTGTTGCCATTA+AGG | + | chr2_1:8375950-8375969 | None:intergenic | 35.0% | |
| GGATAGTTAGTTAGTTAGTG+TGG | - | chr2_1:8375997-8376016 | Msa0192580:CDS | 35.0% | |
| TTGAGTTATCAACCTTGTGT+TGG | - | chr2_1:8376116-8376135 | Msa0192580:CDS | 35.0% | |
| ATGATCTACATTCCAACACA+AGG | + | chr2_1:8376131-8376150 | None:intergenic | 35.0% | |
| TAGTGAGTTTCTCAAACTGT+TGG | - | chr2_1:8376230-8376249 | Msa0192580:CDS | 35.0% | |
| ! | CATGTCATGTTGTCATGTTT+TGG | + | chr2_1:8376295-8376314 | None:intergenic | 35.0% |
| CCAAACTGCTGTGATTATAT+CGG | + | chr2_1:8376343-8376362 | None:intergenic | 35.0% | |
| !!! | AGCCTGTCTTGTTTTGATTT+TGG | - | chr2_1:8376473-8376492 | Msa0192580:CDS | 35.0% |
| AGCCAAAATCAAAACAAGAC+AGG | + | chr2_1:8376478-8376497 | None:intergenic | 35.0% | |
| ! | AATCAAAGCCTTTTGTTGAC+TGG | - | chr2_1:8376646-8376665 | Msa0192580:intron | 35.0% |
| AAAGAGAACCAGTCAACAAA+AGG | + | chr2_1:8376657-8376676 | None:intergenic | 35.0% | |
| ATCACTGAATTAAGCATCAC+AGG | + | chr2_1:8376683-8376702 | None:intergenic | 35.0% | |
| CTTTAAATAGGCTAGGTCAT+AGG | - | chr2_1:8376856-8376875 | Msa0192580:intron | 35.0% | |
| CTTCAAACCGTATGAAAGAA+TGG | + | chr2_1:8377027-8377046 | None:intergenic | 35.0% | |
| !!! | ACTTTTTTGCTGAACTGACT+CGG | - | chr2_1:8377302-8377321 | Msa0192580:CDS | 35.0% |
| CATCGACAAGAAAATCAGAA+TGG | - | chr2_1:8377338-8377357 | Msa0192580:intron | 35.0% | |
| !! | TTTGAAGATTGAGTTGGAGA+GGG | + | chr2_1:8377397-8377416 | None:intergenic | 35.0% |
| !! | ATTTGAAGATTGAGTTGGAG+AGG | + | chr2_1:8377398-8377417 | None:intergenic | 35.0% |
| AACAAGAGAGAAGAGTGAAT+GGG | + | chr2_1:8377435-8377454 | None:intergenic | 35.0% | |
| AAACAAGAGAGAAGAGTGAA+TGG | + | chr2_1:8377436-8377455 | None:intergenic | 35.0% | |
| TCTTGAGTCTCTACAACATT+GGG | + | chr2_1:8377731-8377750 | None:intergenic | 35.0% | |
| ATCTTGAGTCTCTACAACAT+TGG | + | chr2_1:8377732-8377751 | None:intergenic | 35.0% | |
| AATGTTGTAGAGACTCAAGA+TGG | - | chr2_1:8377731-8377750 | Msa0192580:intron | 35.0% | |
| !!! | ACCATTTTGAGATGTATGTG+AGG | + | chr2_1:8377789-8377808 | None:intergenic | 35.0% |
| !! | AAATGGTTTTTCTTCTGAGG+TGG | - | chr2_1:8377802-8377821 | Msa0192580:intron | 35.0% |
| !!! | AATGGTTTTTCTTCTGAGGT+GGG | - | chr2_1:8377803-8377822 | Msa0192580:intron | 35.0% |
| !!! | CTCATCAGCTGTTTTTTTGT+GGG | + | chr2_1:8378152-8378171 | None:intergenic | 35.0% |
| !!! | TCTCATCAGCTGTTTTTTTG+TGG | + | chr2_1:8378153-8378172 | None:intergenic | 35.0% |
| ACAACAATATTGCGAGTCTA+AGG | - | chr2_1:8378194-8378213 | Msa0192580:intron | 35.0% | |
| TTATAAATCACGCCAACTTG+AGG | + | chr2_1:8378229-8378248 | None:intergenic | 35.0% | |
| ! | CAAGTTGGCGTGATTTATAA+TGG | - | chr2_1:8378229-8378248 | Msa0192580:intron | 35.0% |
| !!! | TTCATCAGCTGCTTTTTTGT+GGG | + | chr2_1:8378296-8378315 | None:intergenic | 35.0% |
| !!! | TTTCATCAGCTGCTTTTTTG+TGG | + | chr2_1:8378297-8378316 | None:intergenic | 35.0% |
| TGAAACTTTGCAGGAAGATA+TGG | - | chr2_1:8378312-8378331 | Msa0192580:intron | 35.0% | |
| TGAAGGTAATGACAACATTG+CGG | - | chr2_1:8378339-8378358 | Msa0192580:intron | 35.0% | |
| ! | AAGCATCATGTGACTTTTCT+TGG | + | chr2_1:8378692-8378711 | None:intergenic | 35.0% |
| CACATGATGCTTATAAAGGA+TGG | - | chr2_1:8378700-8378719 | Msa0192580:intron | 35.0% | |
| TTCTGTTAGAAGATCTACCA+GGG | - | chr2_1:8378747-8378766 | Msa0192580:five_prime_UTR | 35.0% | |
| GCTGTTTACGATTATTCTGT+TGG | - | chr2_1:8378790-8378809 | Msa0192580:five_prime_UTR | 35.0% | |
| GATGTAGTCTTCATAGGATT+TGG | - | chr2_1:8378862-8378881 | Msa0192580:five_prime_UTR | 35.0% | |
| CACCAATTTGAACATTCCAA+AGG | + | chr2_1:8378891-8378910 | None:intergenic | 35.0% | |
| ATTTCTCATTGGGGATTAGG+GGG | + | chr2_1:8375898-8375917 | None:intergenic | 40.0% | |
| CAACCTTAATGGCAACAGTA+AGG | - | chr2_1:8375944-8375963 | Msa0192580:CDS | 40.0% | |
| CCGATATAATCACAGCAGTT+TGG | - | chr2_1:8376340-8376359 | Msa0192580:CDS | 40.0% | |
| GCATCACTAGAATTGAACTG+TGG | - | chr2_1:8376499-8376518 | Msa0192580:CDS | 40.0% | |
| CTACCAAGCGCACAAAAAAA+TGG | - | chr2_1:8376594-8376613 | Msa0192580:CDS | 40.0% | |
| !!! | TTGCCATTTTTTTGTGCGCT+TGG | + | chr2_1:8376600-8376619 | None:intergenic | 40.0% |
| ACTGTCAAGCCAACCTATTA+AGG | + | chr2_1:8376739-8376758 | None:intergenic | 40.0% | |
| AAATGTTAAGCCGTCCGATA+GGG | + | chr2_1:8376884-8376903 | None:intergenic | 40.0% | |
| AAAATGTTAAGCCGTCCGAT+AGG | + | chr2_1:8376885-8376904 | None:intergenic | 40.0% | |
| ! | TAACATTTTCCCACCCCTTA+TGG | - | chr2_1:8376896-8376915 | Msa0192580:CDS | 40.0% |
| TTTGGATAACCATAAGGGGT+GGG | + | chr2_1:8376908-8376927 | None:intergenic | 40.0% | |
| GAAGATCAAAGCTTCCGAAA+CGG | - | chr2_1:8377043-8377062 | Msa0192580:intron | 40.0% | |
| AAAGAAGGGGAATCAGAATC+AGG | + | chr2_1:8377136-8377155 | None:intergenic | 40.0% | |
| !! | TTGAAGATTGAGTTGGAGAG+GGG | + | chr2_1:8377396-8377415 | None:intergenic | 40.0% |
| AAACCTCCAAACCAATGCAA+GGG | - | chr2_1:8377545-8377564 | Msa0192580:intron | 40.0% | |
| TCTTGCTAGCATTGCTTCAA+TGG | - | chr2_1:8377574-8377593 | Msa0192580:intron | 40.0% | |
| TTGTGACTATTGATGCATGC+AGG | - | chr2_1:8377660-8377679 | Msa0192580:intron | 40.0% | |
| GCCTCACATACATCTCAAAA+TGG | - | chr2_1:8377785-8377804 | Msa0192580:intron | 40.0% | |
| TGAGAGTCATGTGGCAAAAA+TGG | - | chr2_1:8377932-8377951 | Msa0192580:intron | 40.0% | |
| GTGGAAATCCAACTGAGAAA+CGG | + | chr2_1:8378039-8378058 | None:intergenic | 40.0% | |
| CAGTTGGATTTCCACACAAT+TGG | - | chr2_1:8378044-8378063 | Msa0192580:intron | 40.0% | |
| AGGAAATGAATGTGAACACG+TGG | - | chr2_1:8378090-8378109 | Msa0192580:intron | 40.0% | |
| GAACACGTGGATAAAGTTAC+TGG | - | chr2_1:8378103-8378122 | Msa0192580:intron | 40.0% | |
| GCAATGTTGTCATTACCTTC+AGG | + | chr2_1:8378340-8378359 | None:intergenic | 40.0% | |
| GAAGGTAATGACAACATTGC+GGG | - | chr2_1:8378340-8378359 | Msa0192580:intron | 40.0% | |
| GTTGTCTCAACAGGAAGATA+TGG | - | chr2_1:8378369-8378388 | Msa0192580:intron | 40.0% | |
| TCAACAGGAAGATATGGAAC+CGG | - | chr2_1:8378375-8378394 | Msa0192580:intron | 40.0% | |
| GCAATGTTGTCATTACCTTC+CGG | + | chr2_1:8378340-8378359 | None:intergenic | 40.0% | |
| ! | CCTTGTGGTCACTTGATAAT+TGG | + | chr2_1:8378594-8378613 | None:intergenic | 40.0% |
| CCAATTATCAAGTGACCACA+AGG | - | chr2_1:8378591-8378610 | Msa0192580:intron | 40.0% | |
| ! | ATACCGGTAACTTGTGTAGT+AGG | - | chr2_1:8378647-8378666 | Msa0192580:intron | 40.0% |
| ! | TACCGGTAACTTGTGTAGTA+GGG | - | chr2_1:8378648-8378667 | Msa0192580:intron | 40.0% |
| CTTCTGTTAGAAGATCTACC+AGG | - | chr2_1:8378746-8378765 | Msa0192580:five_prime_UTR | 40.0% | |
| GTAGTCTTCATAGGATTTGG+AGG | - | chr2_1:8378865-8378884 | Msa0192580:five_prime_UTR | 40.0% | |
| !! | GGCCTTTGGAATGTTCAAAT+TGG | - | chr2_1:8378886-8378905 | Msa0192580:five_prime_UTR | 40.0% |
| CTCTCCAACTTCTCCTTATG+CGG | + | chr2_1:8375775-8375794 | None:intergenic | 45.0% | |
| CCATCAAGAAGCAAGTACCT+TGG | + | chr2_1:8375836-8375855 | None:intergenic | 45.0% | |
| ! | CCAAGGTACTTGCTTCTTGA+TGG | - | chr2_1:8375833-8375852 | Msa0192580:intron | 45.0% |
| AATGTTAAGCCGTCCGATAG+GGG | + | chr2_1:8376883-8376902 | None:intergenic | 45.0% | |
| CTTTGGATAACCATAAGGGG+TGG | + | chr2_1:8376909-8376928 | None:intergenic | 45.0% | |
| AGCGCTCACTCACTCAAATT+AGG | - | chr2_1:8376992-8377011 | Msa0192580:intron | 45.0% | |
| GAAACCTCCAAACCAATGCA+AGG | - | chr2_1:8377544-8377563 | Msa0192580:intron | 45.0% | |
| !! | AAACCCTTGCATTGGTTTGG+AGG | + | chr2_1:8377551-8377570 | None:intergenic | 45.0% |
| !! | GCTAAACCCTTGCATTGGTT+TGG | + | chr2_1:8377554-8377573 | None:intergenic | 45.0% |
| CAAGAGCTAAACCCTTGCAT+TGG | + | chr2_1:8377559-8377578 | None:intergenic | 45.0% | |
| GGCATCACTGTAATGTTCCA+CGG | - | chr2_1:8377752-8377771 | Msa0192580:intron | 45.0% | |
| ATTTCTCTTGACCCATCCCT+GGG | - | chr2_1:8377844-8377863 | Msa0192580:intron | 45.0% | |
| AGTACAATCAAACGAGCCCA+GGG | + | chr2_1:8377863-8377882 | None:intergenic | 45.0% | |
| TAGTACAATCAAACGAGCCC+AGG | + | chr2_1:8377864-8377883 | None:intergenic | 45.0% | |
| TGGTTATGCTGAGAGTCATG+TGG | - | chr2_1:8377923-8377942 | Msa0192580:intron | 45.0% | |
| TTATGTCGCCGTTTCTCAGT+TGG | - | chr2_1:8378028-8378047 | Msa0192580:intron | 45.0% | |
| AGGTTGTCTCAACCTCAAGT+TGG | - | chr2_1:8378214-8378233 | Msa0192580:intron | 45.0% | |
| AGCAGCTGATGAAACTTTGC+AGG | - | chr2_1:8378303-8378322 | Msa0192580:intron | 45.0% | |
| CAGGAAGATATGGAACCTGA+AGG | - | chr2_1:8378322-8378341 | Msa0192580:intron | 45.0% | |
| ! | GGGTCTTAAGTTGTCTCAAC+AGG | - | chr2_1:8378360-8378379 | Msa0192580:intron | 45.0% |
| !! | TCTTGATTTGTCTCAACCGC+AGG | - | chr2_1:8378420-8378439 | Msa0192580:intron | 45.0% |
| TTAGAAATCACGGCAACCTG+CGG | + | chr2_1:8378439-8378458 | None:intergenic | 45.0% | |
| CAGGTTGCCGTGATTTCTAA+TGG | - | chr2_1:8378439-8378458 | Msa0192580:intron | 45.0% | |
| CACCCTACTACACAAGTTAC+CGG | + | chr2_1:8378653-8378672 | None:intergenic | 45.0% | |
| TCATAGGATTTGGAGGCCTT+TGG | - | chr2_1:8378872-8378891 | Msa0192580:five_prime_UTR | 45.0% | |
| GACACCGCATAAGGAGAAGT+TGG | - | chr2_1:8375768-8375787 | Msa0192580:CDS | 50.0% | |
| TCGAACTGTGCGTCTCTCTT+AGG | - | chr2_1:8376445-8376464 | Msa0192580:CDS | 50.0% | |
| ! | TGTGCGCTTGGTAGCTCAAT+GGG | + | chr2_1:8376588-8376607 | None:intergenic | 50.0% |
| ! | TTGTGCGCTTGGTAGCTCAA+TGG | + | chr2_1:8376589-8376608 | None:intergenic | 50.0% |
| ATGTTAAGCCGTCCGATAGG+GGG | + | chr2_1:8376882-8376901 | None:intergenic | 50.0% | |
| ! | GGTGGAACGTATTGGGGTTT+TGG | + | chr2_1:8377367-8377386 | None:intergenic | 50.0% |
| !! | TGTGGTGGTGGAACGTATTG+GGG | + | chr2_1:8377373-8377392 | None:intergenic | 50.0% |
| !! | GTGTGGTGGTGGAACGTATT+GGG | + | chr2_1:8377374-8377393 | None:intergenic | 50.0% |
| ! | GTGAGGCGTTAATCAAACCG+TGG | + | chr2_1:8377772-8377791 | None:intergenic | 50.0% |
| CATTTCTCTTGACCCATCCC+TGG | - | chr2_1:8377843-8377862 | Msa0192580:intron | 50.0% | |
| AATCAAACGAGCCCAGGGAT+GGG | + | chr2_1:8377858-8377877 | None:intergenic | 50.0% | |
| AACAGCTGATGAGACCTCAC+AGG | - | chr2_1:8378159-8378178 | Msa0192580:intron | 50.0% | |
| GTTACCTTCAGCTTCCTGTG+AGG | + | chr2_1:8378176-8378195 | None:intergenic | 50.0% | |
| CAGGAAGATATGGAACCGGA+AGG | - | chr2_1:8378379-8378398 | Msa0192580:intron | 50.0% | |
| TTTGATCCTACCCATGAGCC+AGG | - | chr2_1:8378526-8378545 | Msa0192580:intron | 50.0% | |
| AGCGACTGAGACACCGCATA+AGG | - | chr2_1:8375759-8375778 | Msa0192580:CDS | 55.0% | |
| TATGTCGCTCGCTGCATCCA+AGG | - | chr2_1:8375816-8375835 | Msa0192580:intron | 55.0% | |
| GGTAGCTCAATGGGCCCATT+AGG | + | chr2_1:8376579-8376598 | None:intergenic | 55.0% | |
| CTAGGTCATAGGCCCCCTAT+CGG | - | chr2_1:8376867-8376886 | Msa0192580:CDS | 55.0% | |
| !! | GGTGTGGTGGTGGAACGTAT+TGG | + | chr2_1:8377375-8377394 | None:intergenic | 55.0% |
| !! | GATTGAGTTGGAGAGGGGTG+TGG | + | chr2_1:8377391-8377410 | None:intergenic | 55.0% |
| CAATCAAACGAGCCCAGGGA+TGG | + | chr2_1:8377859-8377878 | None:intergenic | 55.0% | |
| GAGACCTCACAGGAAGCTGA+AGG | - | chr2_1:8378169-8378188 | Msa0192580:intron | 55.0% | |
| CCTAACACTGCCTGGCTCAT+GGG | + | chr2_1:8378539-8378558 | None:intergenic | 55.0% | |
| ACCTAACACTGCCTGGCTCA+TGG | + | chr2_1:8378540-8378559 | None:intergenic | 55.0% | |
| AGTGGAGACCTAACACTGCC+TGG | + | chr2_1:8378547-8378566 | None:intergenic | 55.0% | |
| GTCATAGGCCCCCTATCGGA+CGG | - | chr2_1:8376871-8376890 | Msa0192580:CDS | 60.0% | |
| ! | TGAGTTGGAGAGGGGTGTGG+TGG | + | chr2_1:8377388-8377407 | None:intergenic | 60.0% |
| ACACTGCCTGGCTCATGGGT+AGG | + | chr2_1:8378535-8378554 | None:intergenic | 60.0% | |
| CCCATGAGCCAGGCAGTGTT+AGG | - | chr2_1:8378536-8378555 | Msa0192580:intron | 60.0% | |
| ! | GTTGGAGAGGGGTGTGGTGG+TGG | + | chr2_1:8377385-8377404 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8375752 | 8378932 | 8375752 | ID=Msa0192580;Name=Msa0192580 |
| chr2_1 | mRNA | 8375752 | 8378932 | 8375752 | ID=Msa0192580-mRNA-1;Parent=Msa0192580;Name=Msa0192580-mRNA-1;_AED=0.30;_eAED=0.30;_QI=241|0.83|0.71|1|0.66|0.57|7|0|368 |
| chr2_1 | exon | 8375752 | 8375829 | 8375752 | ID=Msa0192580-mRNA-1:exon:3863;Parent=Msa0192580-mRNA-1 |
| chr2_1 | exon | 8375916 | 8376656 | 8375916 | ID=Msa0192580-mRNA-1:exon:3862;Parent=Msa0192580-mRNA-1 |
| chr2_1 | exon | 8376864 | 8377002 | 8376864 | ID=Msa0192580-mRNA-1:exon:3861;Parent=Msa0192580-mRNA-1 |
| chr2_1 | exon | 8377087 | 8377166 | 8377087 | ID=Msa0192580-mRNA-1:exon:3860;Parent=Msa0192580-mRNA-1 |
| chr2_1 | exon | 8377259 | 8377336 | 8377259 | ID=Msa0192580-mRNA-1:exon:3859;Parent=Msa0192580-mRNA-1 |
| chr2_1 | exon | 8377620 | 8377637 | 8377620 | ID=Msa0192580-mRNA-1:exon:3858;Parent=Msa0192580-mRNA-1 |
| chr2_1 | exon | 8378719 | 8378932 | 8378719 | ID=Msa0192580-mRNA-1:exon:3857;Parent=Msa0192580-mRNA-1 |
| chr2_1 | five_prime_UTR | 8378719 | 8378932 | 8378719 | ID=Msa0192580-mRNA-1:five_prime_utr;Parent=Msa0192580-mRNA-1 |
| chr2_1 | five_prime_UTR | 8377620 | 8377637 | 8377620 | ID=Msa0192580-mRNA-1:five_prime_utr;Parent=Msa0192580-mRNA-1 |
| chr2_1 | five_prime_UTR | 8377328 | 8377336 | 8377328 | ID=Msa0192580-mRNA-1:five_prime_utr;Parent=Msa0192580-mRNA-1 |
| chr2_1 | CDS | 8377259 | 8377327 | 8377259 | ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1 |
| chr2_1 | CDS | 8377087 | 8377166 | 8377087 | ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1 |
| chr2_1 | CDS | 8376864 | 8377002 | 8376864 | ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1 |
| chr2_1 | CDS | 8375916 | 8376656 | 8375916 | ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1 |
| chr2_1 | CDS | 8375752 | 8375829 | 8375752 | ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
