AlfalfaGEDB | Msa0192580

M. sativa cultivar zhongmu-4 / Msa0192580

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192580	XP_013448301.1	88.150	346	34	3	1	344	1	341	0.0	612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192580	sp\|Q8RWD7\|EMB74_ARATH	37.168	113	64	3	22	132	64	171	1.28e-15	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192580	A0A072TZN4	88.150	346	34	3	1	344	1	341	0.0	612

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TFs/TRs:

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Gene ID	Type	Classification
Msa0192580	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0192580	Msa0272670	0.822084	2.862503e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192580	MtrunA17_Chr7g0231611	88.150	346	34	3	1	344	1	341	0.0	612
Msa0192580	MtrunA17_Chr5g0416851	88.439	346	33	3	1	344	1	341	0.0	602
Msa0192580	MtrunA17_Chr2g0282701	85.600	250	16	2	96	344	42	272	7.79e-143	406
Msa0192580	MtrunA17_Chr1g0182611	32.394	142	82	6	1	132	1	138	1.24e-14	75.1
Msa0192580	MtrunA17_Chr1g0182621	34.454	119	64	4	22	134	28	138	1.86e-13	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192580	AT1G58210.1	37.168	113	64	3	22	132	64	171	1.30e-16	79.7

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Find 98 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTGCATTGGTTTGG+AGG	0.442882	2_1:+8377114	None:intergenic
AAACCTCCAAACCAATGCAA+GGG	0.637222	2_1:-8377117	Msa0192580:CDS
AACAGCTGATGAGACCTCAC+AGG	0.646895	2_1:-8376503	Msa0192580:CDS
AAGAAGAATGTAGATGATAC+CGG	0.549093	2_1:-8376031	Msa0192580:CDS
AAGTCACATGATGCTTATAA+AGG	0.387819	2_1:-8375966	Msa0192580:CDS
AATGTTGTAGAGACTCAAGA+TGG	0.656225	2_1:-8376931	Msa0192580:CDS
AATTATTCAGCTCATAGTTC+AGG	0.376079	2_1:-8376592	Msa0192580:CDS
AATTTCTCATTGGGGATTAG+GGG	0.525370	2_1:+8378766	None:intergenic
ACAACAATATTGCGAGTCTA+AGG	0.409478	2_1:-8376468	Msa0192580:CDS
ACACTGCCTGGCTCATGGGT+AGG	0.608929	2_1:+8376130	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTATCTCAATTTCTCATTG+GGG	+	chr2_1:8375907-8375926	None:intergenic	30.0%
CAGTATCTCAATTTCTCATT+GGG	+	chr2_1:8375908-8375927	None:intergenic	30.0%
TGATTACTTAAAGTCAGAGA+GGG	+	chr2_1:8376631-8376650	None:intergenic	30.0%
TTGATTACTTAAAGTCAGAG+AGG	+	chr2_1:8376632-8376651	None:intergenic	30.0%
TAATCAAAGCCTTAATAGGT+TGG	-	chr2_1:8376727-8376746	Msa0192580:intron	30.0%
GACCAAGCTAAACTTTAAAT+AGG	-	chr2_1:8376844-8376863	Msa0192580:intron	30.0%
AGCTAAACTTTAAATAGGCT+AGG	-	chr2_1:8376849-8376868	Msa0192580:intron	30.0%
TTTCTTTGGATAACCATAAG+GGG	+	chr2_1:8376912-8376931	None:intergenic	30.0%
AAGACGAAAATAACAAAAGC+GGG	+	chr2_1:8376966-8376985	None:intergenic	30.0%
TTCTCTTCCATTCTTTCATA+CGG	-	chr2_1:8377017-8377036	Msa0192580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	8375752	8378932	8375752	ID=Msa0192580;Name=Msa0192580
chr2_1	mRNA	8375752	8378932	8375752	ID=Msa0192580-mRNA-1;Parent=Msa0192580;Name=Msa0192580-mRNA-1;_AED=0.30;_eAED=0.30;_QI=241\|0.83\|0.71\|1\|0.66\|0.57\|7\|0\|368
chr2_1	exon	8375752	8375829	8375752	ID=Msa0192580-mRNA-1:exon:3863;Parent=Msa0192580-mRNA-1
chr2_1	exon	8375916	8376656	8375916	ID=Msa0192580-mRNA-1:exon:3862;Parent=Msa0192580-mRNA-1
chr2_1	exon	8376864	8377002	8376864	ID=Msa0192580-mRNA-1:exon:3861;Parent=Msa0192580-mRNA-1
chr2_1	exon	8377087	8377166	8377087	ID=Msa0192580-mRNA-1:exon:3860;Parent=Msa0192580-mRNA-1
chr2_1	exon	8377259	8377336	8377259	ID=Msa0192580-mRNA-1:exon:3859;Parent=Msa0192580-mRNA-1
chr2_1	exon	8377620	8377637	8377620	ID=Msa0192580-mRNA-1:exon:3858;Parent=Msa0192580-mRNA-1
chr2_1	exon	8378719	8378932	8378719	ID=Msa0192580-mRNA-1:exon:3857;Parent=Msa0192580-mRNA-1
chr2_1	five_prime_UTR	8378719	8378932	8378719	ID=Msa0192580-mRNA-1:five_prime_utr;Parent=Msa0192580-mRNA-1
chr2_1	five_prime_UTR	8377620	8377637	8377620	ID=Msa0192580-mRNA-1:five_prime_utr;Parent=Msa0192580-mRNA-1
chr2_1	five_prime_UTR	8377328	8377336	8377328	ID=Msa0192580-mRNA-1:five_prime_utr;Parent=Msa0192580-mRNA-1
chr2_1	CDS	8377259	8377327	8377259	ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1
chr2_1	CDS	8377087	8377166	8377087	ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1
chr2_1	CDS	8376864	8377002	8376864	ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1
chr2_1	CDS	8375916	8376656	8375916	ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1
chr2_1	CDS	8375752	8375829	8375752	ID=Msa0192580-mRNA-1:cds;Parent=Msa0192580-mRNA-1

Gene Sequence

>Msa0192580

ATGGCTTCCAAAACCCCAATACGTTCCACCACCACACCCCTCTCCAACTCAATCTTCAAATCTAAACACATTTTCTTACATGAATGGTGGCTTGTGAAACCTCCAAACCAATGCAAGGGTTTAGCTCTTGCTAGCATTGCTTCAATGGAGAGAGAAAGAATGTTTTTTTCTTCACTGATTGTAGAGAGACATGAACCCAATGTTGTAGAGACTCAAGATGGCATCACTGTAATGTTCCACGGTTTGATTAACGCCTCACATACATCTCAAAATGGTTTTTCTTCTGAGTTATGTCGCCGTTTCTCAGTTGGATTTCCACACAATTGGAAAAATTATTCAGCTCATAGTTCAGGAAATGAATGTGAACACGTGGATAAAGTTACTGGTTTTGACGACTCAAATACTTCTTCCCACAAAAAAACAGCTGATGAGACCTCACAGGAAGCTGAAGGTAACAACAATATTGCGAGTCTAAGGTTGTCTCAACCTCAAGTTGGCGTGATTTATAATGGTGAAAATGGATTCTCAAATGTTGACAACTCAAATGCTTCATCCCACAAAAAAGCAGCTGATGAAACTTTGCAGGAAGATATGGAACCTGAAGGTAATGACAACATTGCGGGTCTTAAGTTGTCTCAACAGGAAGATATGGAACCGGAAGGTAATGACAACATTGCGAGTCTTGATTTGTCTCAACCGCAGGTTGCCGTGATTTCTAATGGTGAAAATGGAGTCTCAAGTGTTGCTGCAGCTGAAAATAGTCAATCTTTGATGAGTGTATTTGAATTTGATCCTACCCATGAGCCAGGCAGTGTTAGGTCTCCACTTTACGTAAAGAAATTGGAGTTTGACCAATTATCAAGTGACCACAAGGATAAGAAATGTATCAAGAAGAAGAATGTAGATGATACCGGTAACTTGTGTAGTAGGGTGCTAACAAGAAGCATTGCCAAGAAAAGTCACATGATGCTTATAAAGGATGGGAAAGCTGAAGTAAAATGTTTCACTTCTGTTAGAAGATCTACCAGGATATACAGATGTAGTCTTCATAGGATTTGGAGGCCTTTGGAATGTTCAAATTGGTGCCTCAAGAAGCATATTCCATAA

Protein sequence

>Msa0192580

MASKTPIRSTTTPLSNSIFKSKHIFLHEWWLVKPPNQCKGLALASIASMERERMFFSSLIVERHEPNVVETQDGITVMFHGLINASHTSQNGFSSELCRRFSVGFPHNWKNYSAHSSGNECEHVDKVTGFDDSNTSSHKKTADETSQEAEGNNNIASLRLSQPQVGVIYNGENGFSNVDNSNASSHKKAADETLQEDMEPEGNDNIAGLKLSQQEDMEPEGNDNIASLDLSQPQVAVISNGENGVSSVAAAENSQSLMSVFEFDPTHEPGSVRSPLYVKKLEFDQLSSDHKDKKCIKKKNVDDTGNLCSRVLTRSIAKKSHMMLIKDGKAEVKCFTSVRRSTRIYRCSLHRIWRPLECSNWCLKKHIP*