Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193590 | XP_013462571.1 | 95.918 | 245 | 7 | 1 | 1 | 245 | 1 | 242 | 3.74e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193590 | sp|Q9SJI9|PCO4_ARATH | 56.735 | 245 | 100 | 3 | 1 | 244 | 1 | 240 | 9.73e-95 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193590 | G7ZXJ8 | 95.918 | 245 | 7 | 1 | 1 | 245 | 1 | 242 | 1.79e-172 | 484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0193590 | Msa0274580 | 0.930286 | 2.042982e-93 | -8.615850e-47 |
| Msa0193590 | Msa1368170 | 0.801994 | 6.924222e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193590 | MtrunA17_Chr2g0283961 | 95.918 | 245 | 7 | 1 | 1 | 245 | 1 | 242 | 3.44e-176 | 484 |
| Msa0193590 | MtrunA17_Chr4g0041281 | 59.184 | 245 | 92 | 4 | 1 | 244 | 1 | 238 | 3.62e-102 | 296 |
| Msa0193590 | MtrunA17_Chr2g0320221 | 55.967 | 243 | 99 | 3 | 3 | 245 | 4 | 238 | 1.88e-97 | 284 |
| Msa0193590 | MtrunA17_Chr2g0307681 | 40.927 | 259 | 119 | 8 | 4 | 244 | 28 | 270 | 1.65e-55 | 179 |
| Msa0193590 | MtrunA17_Chr6g0452941 | 39.147 | 258 | 123 | 10 | 1 | 243 | 38 | 276 | 2.35e-55 | 179 |
| Msa0193590 | MtrunA17_Chr7g0216881 | 40.000 | 240 | 115 | 9 | 4 | 233 | 45 | 265 | 1.45e-53 | 174 |
| Msa0193590 | MtrunA17_Chr7g0253891 | 37.143 | 245 | 136 | 6 | 4 | 243 | 47 | 278 | 9.53e-49 | 162 |
| Msa0193590 | MtrunA17_Chr6g0460971 | 38.057 | 247 | 130 | 7 | 4 | 243 | 58 | 288 | 5.41e-48 | 160 |
| Msa0193590 | MtrunA17_Chr5g0426531 | 39.024 | 246 | 129 | 8 | 1 | 243 | 3 | 230 | 1.17e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193590 | AT2G42670.1 | 56.735 | 245 | 100 | 3 | 1 | 244 | 1 | 240 | 9.89e-96 | 280 |
| Msa0193590 | AT2G42670.2 | 57.895 | 247 | 95 | 5 | 1 | 244 | 1 | 241 | 1.77e-95 | 280 |
| Msa0193590 | AT3G58670.2 | 56.680 | 247 | 100 | 4 | 1 | 245 | 1 | 242 | 1.13e-92 | 273 |
| Msa0193590 | AT3G58670.3 | 56.680 | 247 | 100 | 4 | 1 | 245 | 1 | 242 | 1.13e-92 | 273 |
| Msa0193590 | AT3G58670.1 | 56.680 | 247 | 100 | 4 | 1 | 245 | 1 | 242 | 1.13e-92 | 273 |
| Msa0193590 | AT3G58670.4 | 54.902 | 204 | 86 | 3 | 43 | 245 | 1 | 199 | 5.87e-72 | 218 |
| Msa0193590 | AT2G42670.3 | 57.669 | 163 | 63 | 3 | 84 | 244 | 15 | 173 | 1.19e-58 | 184 |
| Msa0193590 | AT1G18490.1 | 40.000 | 255 | 135 | 7 | 2 | 244 | 33 | 281 | 1.02e-56 | 182 |
| Msa0193590 | AT5G15120.1 | 39.841 | 251 | 125 | 9 | 4 | 244 | 58 | 292 | 1.33e-53 | 175 |
| Msa0193590 | AT5G39890.1 | 38.889 | 252 | 120 | 10 | 4 | 244 | 47 | 275 | 2.32e-51 | 169 |
| Msa0193590 | AT5G39890.2 | 41.414 | 198 | 94 | 6 | 4 | 197 | 47 | 226 | 1.86e-48 | 160 |
Find 97 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACCTGGTTGGAACATTT+TGG | 0.149681 | 2_1:+9403724 | Msa0193590:three_prime_UTR |
| TAGCGACCTGAGTGATATTT+TGG | 0.166787 | 2_1:+9400946 | Msa0193590:five_prime_UTR |
| CCGCCTAGCGATTTGATTAT+TGG | 0.191711 | 2_1:+9403612 | Msa0193590:CDS |
| CAACAATTCTTTATCCAAAT+AGG | 0.216030 | 2_1:+9403284 | Msa0193590:CDS |
| TTGCTTAAAACAGTCATTCT+AGG | 0.237625 | 2_1:-9401735 | None:intergenic |
| TGGAGGTTGCCATCCCTATT+TGG | 0.251310 | 2_1:-9403298 | None:intergenic |
| CTCCTTCATCGCCGAATATT+AGG | 0.252891 | 2_1:-9403654 | None:intergenic |
| TCGAGAGCCTCTTCTGAAAT+AGG | 0.276585 | 2_1:-9401107 | None:intergenic |
| TGATTGTAGATACTGTTTAT+TGG | 0.281270 | 2_1:+9400843 | Msa0193590:intron |
| TTATGCTGAACATAGTTCTA+TGG | 0.298522 | 2_1:+9403957 | Msa0193590:three_prime_UTR |
| CGCCTAGCGATTTGATTATT+GGG | 0.306512 | 2_1:+9403613 | Msa0193590:CDS |
| CATAATAATTCACATGTCTA+AGG | 0.329473 | 2_1:-9403898 | None:intergenic |
| AACAATTCTTTATCCAAATA+GGG | 0.329524 | 2_1:+9403285 | Msa0193590:CDS |
| CGTTCTATGAATGGTGGAAA+TGG | 0.336983 | 2_1:+9401443 | Msa0193590:CDS |
| TCATACAATTTCTGAATATA+CGG | 0.350667 | 2_1:-9401053 | None:intergenic |
| TGCATGTGAAATCATTTGAT+TGG | 0.380621 | 2_1:+9401775 | Msa0193590:CDS |
| CCTCATAGTCAAGACCGATA+TGG | 0.384705 | 2_1:-9401397 | None:intergenic |
| TCCTTCATCGCCGAATATTA+GGG | 0.388366 | 2_1:-9403653 | None:intergenic |
| TGCAGGTGAATGTACTTAAT+AGG | 0.393225 | 2_1:-9401491 | None:intergenic |
| AATGGTGGAAATGGGAGAAT+TGG | 0.401520 | 2_1:+9401452 | Msa0193590:CDS |
| TCTTGACTATGAGGCGCAAC+TGG | 0.403102 | 2_1:+9401406 | Msa0193590:CDS |
| AAATAGTTTATCTTTCTGTT+TGG | 0.406108 | 2_1:+9403747 | Msa0193590:three_prime_UTR |
| GTTTATCTTTCTGTTTGGTA+TGG | 0.406508 | 2_1:+9403752 | Msa0193590:three_prime_UTR |
| ACTTCTTCTTCCAATGAGTA+AGG | 0.411350 | 2_1:-9403370 | None:intergenic |
| TCCAATAAAACAACGAAACT+TGG | 0.417563 | 2_1:-9400971 | None:intergenic |
| AATACAGAGGCCCTAATATT+CGG | 0.418183 | 2_1:+9403643 | Msa0193590:CDS |
| GAAGAGAGCACAAGGGGTTA+TGG | 0.418395 | 2_1:-9403332 | None:intergenic |
| TCTTACCCCTCCTTACTCAT+TGG | 0.421294 | 2_1:+9403360 | Msa0193590:CDS |
| TCATTGGAAGAAGAAGTAAA+TGG | 0.431171 | 2_1:+9403376 | Msa0193590:CDS |
| GCGATTTGATTATTGGGAAT+GGG | 0.433631 | 2_1:+9403619 | Msa0193590:CDS |
| GAGAGACACGAGAAGAGAAC+AGG | 0.439228 | 2_1:-9400444 | None:intergenic |
| CTCATAGTCAAGACCGATAT+GGG | 0.439311 | 2_1:-9401396 | None:intergenic |
| AGCATTCTTAAAGCGACATC+AGG | 0.442765 | 2_1:+9400367 | None:intergenic |
| GTTCTTATACAGCATTGGTC+AGG | 0.453478 | 2_1:+9403688 | Msa0193590:three_prime_UTR |
| TTATGACTTTCTTATTTGGA+TGG | 0.456534 | 2_1:+9403933 | Msa0193590:intron |
| AGGCGCAACTGGCGCGAAGT+TGG | 0.462393 | 2_1:+9401417 | Msa0193590:CDS |
| GGAGTATTCTGTATGTCTCC+TGG | 0.463962 | 2_1:+9401687 | Msa0193590:CDS |
| AGCGATTTGATTATTGGGAA+TGG | 0.467999 | 2_1:+9403618 | Msa0193590:CDS |
| GCCCTAATATTCGGCGATGA+AGG | 0.480072 | 2_1:+9403652 | Msa0193590:CDS |
| GTTCTATGAATGGTGGAAAT+GGG | 0.481808 | 2_1:+9401444 | Msa0193590:CDS |
| TTGTTGTCTGTCTCTCACTC+TGG | 0.484116 | 2_1:+9400415 | Msa0193590:five_prime_UTR |
| TCGCTGAGGACAGATCTTCC+AGG | 0.485093 | 2_1:+9403424 | Msa0193590:CDS |
| GGATCAGATTGTACCTAAAA+CGG | 0.487386 | 2_1:-9401141 | None:intergenic |
| CATTTGTTCTTATACAGCAT+TGG | 0.493867 | 2_1:+9403683 | Msa0193590:three_prime_UTR |
| GGGTTGAAGCCTTCCCATAT+CGG | 0.497687 | 2_1:+9401383 | Msa0193590:CDS |
| GGGTTATGGCTTTGAAGCAA+TGG | 0.504823 | 2_1:-9403318 | None:intergenic |
| GACAAGAAACTTTACCTGGT+TGG | 0.505996 | 2_1:+9403714 | Msa0193590:three_prime_UTR |
| CCATATCGGTCTTGACTATG+AGG | 0.507546 | 2_1:+9401397 | Msa0193590:CDS |
| GCCGCAGTTATAATCTAGAA+AGG | 0.512137 | 2_1:-9403846 | None:intergenic |
| TACTTAATAGGAGGACCCTC+AGG | 0.529570 | 2_1:-9401479 | None:intergenic |
| CTTCTTCCAATGAGTAAGGA+GGG | 0.529744 | 2_1:-9403366 | None:intergenic |
| AGTTGGAAACGTTCTATGAA+TGG | 0.544207 | 2_1:+9401434 | Msa0193590:CDS |
| GTACAGACTATGATAAATGC+TGG | 0.547329 | 2_1:+9403788 | Msa0193590:three_prime_UTR |
| AAGGCTTCCTTGTCCACTGA+GGG | 0.547680 | 2_1:+9401083 | Msa0193590:CDS |
| CCCTTTCTAGATTATAACTG+CGG | 0.551621 | 2_1:+9403845 | Msa0193590:three_prime_UTR |
| CCGCAGTTATAATCTAGAAA+GGG | 0.553612 | 2_1:-9403845 | None:intergenic |
| AGATTGTACCTAAAACGGTT+CGG | 0.560671 | 2_1:-9401136 | None:intergenic |
| ATTCTTTATCCAAATAGGGA+TGG | 0.561052 | 2_1:+9403289 | Msa0193590:CDS |
| AATAGGTCCCTCAGTGGACA+AGG | 0.564467 | 2_1:-9401090 | None:intergenic |
| TTCTTCCAATGAGTAAGGAG+GGG | 0.571850 | 2_1:-9403365 | None:intergenic |
| GCTTGACAAGAAACTTTACC+TGG | 0.580353 | 2_1:+9403710 | Msa0193590:three_prime_UTR |
| TCTTCTTCCAATGAGTAAGG+AGG | 0.590223 | 2_1:-9403367 | None:intergenic |
| GATCTGTCCTCAGCGACTTG+CGG | 0.591770 | 2_1:-9403417 | None:intergenic |
| TAGTGCTTGAGGAGCTGCAC+GGG | 0.593482 | 2_1:+9403550 | Msa0193590:intron |
| TTATGGCTTTGAAGCAATGG+AGG | 0.594826 | 2_1:-9403315 | None:intergenic |
| ATAATCAAATCGCTAGGCGG+CGG | 0.595756 | 2_1:-9403609 | None:intergenic |
| TGGAAACGTTCTATGAATGG+TGG | 0.597235 | 2_1:+9401437 | Msa0193590:CDS |
| AGAACTTGTCACATTCGTGC+AGG | 0.604310 | 2_1:-9401508 | None:intergenic |
| TCTAGATTATAACTGCGGCA+TGG | 0.605968 | 2_1:+9403850 | Msa0193590:three_prime_UTR |
| GGGAGAATTGGAACTCCTGA+GGG | 0.606282 | 2_1:+9401464 | Msa0193590:CDS |
| TGAAGCGGAATCAAAGAACC+AGG | 0.610487 | 2_1:-9401705 | None:intergenic |
| TAAAGAATTGTTGTGTCACA+AGG | 0.613761 | 2_1:-9403274 | None:intergenic |
| TGAGGGACCTATTTCAGAAG+AGG | 0.616721 | 2_1:+9401100 | Msa0193590:CDS |
| GAGTGTAATACGTGAAACAT+TGG | 0.616799 | 2_1:-9400512 | None:intergenic |
| CAAGGCTTCCTTGTCCACTG+AGG | 0.617584 | 2_1:+9401082 | Msa0193590:CDS |
| TGGGATAGATCGCATGACGC+AGG | 0.625663 | 2_1:-9401807 | None:intergenic |
| GAAATTGTATGACGTCTGCA+AGG | 0.625999 | 2_1:+9401064 | Msa0193590:CDS |
| TGGGAGAATTGGAACTCCTG+AGG | 0.629926 | 2_1:+9401463 | Msa0193590:CDS |
| TTCCCAATAATCAAATCGCT+AGG | 0.630049 | 2_1:-9403615 | None:intergenic |
| AGAATGTCGAAGAGAGCACA+AGG | 0.630272 | 2_1:-9403340 | None:intergenic |
| TAGTCAAGACCGATATGGGA+AGG | 0.630545 | 2_1:-9401392 | None:intergenic |
| TTGGATCCAAAATATCACTC+AGG | 0.630608 | 2_1:-9400952 | None:intergenic |
| ATTTCCAAAATGTTCCAACC+AGG | 0.631923 | 2_1:-9403728 | None:intergenic |
| TGAGTTCATCTGAAATCACC+TGG | 0.632126 | 2_1:+9403574 | Msa0193590:CDS |
| GTAATACGTGAAACATTGGT+TGG | 0.643893 | 2_1:-9400508 | None:intergenic |
| CTTATTTCCGCAAGTCGCTG+AGG | 0.643960 | 2_1:+9403410 | Msa0193590:CDS |
| GCGTCATGCGATCTATCCCA+AGG | 0.645133 | 2_1:+9401810 | Msa0193590:CDS |
| AGGTGAATGTACTTAATAGG+AGG | 0.647213 | 2_1:-9401488 | None:intergenic |
| GAAAGGGAAAACTAGAAACA+TGG | 0.648369 | 2_1:-9403829 | None:intergenic |
| AATGTCGAAGAGAGCACAAG+GGG | 0.652144 | 2_1:-9403338 | None:intergenic |
| CCAATAATCAAATCGCTAGG+CGG | 0.653004 | 2_1:-9403612 | None:intergenic |
| ATTGGGAATGGGCAATACAG+AGG | 0.655488 | 2_1:+9403630 | Msa0193590:CDS |
| ATTCTAGGATGATCATGAAG+CGG | 0.655662 | 2_1:-9401720 | None:intergenic |
| GTAGTGCTTGAGGAGCTGCA+CGG | 0.676084 | 2_1:+9403549 | Msa0193590:intron |
| TTCTGAAATAGGTCCCTCAG+TGG | 0.690477 | 2_1:-9401096 | None:intergenic |
| AGAGAGTCACGACATAATCG+AGG | 0.708621 | 2_1:-9400479 | None:intergenic |
| GAATGTCGAAGAGAGCACAA+GGG | 0.743522 | 2_1:-9403339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAGATATAATGAAA+TGG | - | chr2_1:9400581-9400600 | None:intergenic | 15.0% |
| !!! | ATTTTCAATATATGAAACTT+GGG | + | chr2_1:9400634-9400653 | Msa0193590:intron | 15.0% |
| !! | AAAACAACAAAAATGAAAAT+GGG | - | chr2_1:9400688-9400707 | None:intergenic | 15.0% |
| !! | AAAAACAACAAAAATGAAAA+TGG | - | chr2_1:9400689-9400708 | None:intergenic | 15.0% |
| !! | AATCATAAGTAAATACAATA+AGG | - | chr2_1:9401843-9401862 | None:intergenic | 15.0% |
| !!! | AATTTTGAATTTAACTTTTG+TGG | - | chr2_1:9403195-9403214 | None:intergenic | 15.0% |
| !! | ATTATTATGACTTTCTTATT+TGG | + | chr2_1:9403929-9403948 | Msa0193590:intron | 15.0% |
| !!! | GATTTTCAATATATGAAACT+TGG | + | chr2_1:9400633-9400652 | Msa0193590:intron | 20.0% |
| !!! | ACTTGCAAGTTTTTTTTTTA+TGG | + | chr2_1:9400756-9400775 | Msa0193590:intron | 20.0% |
| !! | TCATACAATTTCTGAATATA+CGG | - | chr2_1:9401056-9401075 | None:intergenic | 20.0% |
| !! | ACAAATTCAACAAAAAACAA+AGG | - | chr2_1:9401165-9401184 | None:intergenic | 20.0% |
| !! | ATACAGTTCACATTAAAATT+CGG | - | chr2_1:9401244-9401263 | None:intergenic | 20.0% |
| !!! | TATACTGTAATGTTTGATTT+GGG | + | chr2_1:9401261-9401280 | Msa0193590:intron | 20.0% |
| !! | GTTAATACTCTAAATGAATT+TGG | + | chr2_1:9401580-9401599 | Msa0193590:intron | 20.0% |
| !!! | GATTTTGAAATATAGAAAAG+GGG | - | chr2_1:9402115-9402134 | None:intergenic | 20.0% |
| !!! | GGATTTTGAAATATAGAAAA+GGG | - | chr2_1:9402116-9402135 | None:intergenic | 20.0% |
| !!! | TGGATTTTGAAATATAGAAA+AGG | - | chr2_1:9402117-9402136 | None:intergenic | 20.0% |
| !!! | AAACGTATTTTTTCTGTAAA+CGG | - | chr2_1:9402190-9402209 | None:intergenic | 20.0% |
| !!! | CTAATTTTTAGTTGGAATTA+AGG | + | chr2_1:9402213-9402232 | Msa0193590:intron | 20.0% |
| !!! | TTTTGTTCTTTTAAGCAAAA+TGG | + | chr2_1:9402309-9402328 | Msa0193590:intron | 20.0% |
| !! | AAAATATATCTTATCAAAGC+AGG | - | chr2_1:9402963-9402982 | None:intergenic | 20.0% |
| !! | TAAGTTAAGATACATCAATA+TGG | - | chr2_1:9403091-9403110 | None:intergenic | 20.0% |
| !! | AACAATTCTTTATCCAAATA+GGG | + | chr2_1:9403285-9403304 | Msa0193590:CDS | 20.0% |
| !! | AAAATAATGAGAGATTTAGA+AGG | - | chr2_1:9403462-9403481 | None:intergenic | 20.0% |
| !! | AAATAGTTTATCTTTCTGTT+TGG | + | chr2_1:9403747-9403766 | Msa0193590:three_prime_UTR | 20.0% |
| !!! | GAACTTTGAACTGATTTTAT+TGG | + | chr2_1:9400782-9400801 | Msa0193590:intron | 25.0% |
| ! | TGATTGTAGATACTGTTTAT+TGG | + | chr2_1:9400843-9400862 | Msa0193590:intron | 25.0% |
| ! | GTATACTGTAATGTTTGATT+TGG | + | chr2_1:9401260-9401279 | Msa0193590:intron | 25.0% |
| !!! | TTGTTTTGAACACTGAATTT+TGG | + | chr2_1:9401611-9401630 | Msa0193590:intron | 25.0% |
| !! | ACTGAATTTTGGATTCAAAT+GGG | + | chr2_1:9401622-9401641 | Msa0193590:intron | 25.0% |
| !!! | TTGTTTTTGTTTTTGCAGAT+TGG | + | chr2_1:9401666-9401685 | Msa0193590:intron | 25.0% |
| !! | TATAATTTGGCTTCATTAAC+AGG | + | chr2_1:9402089-9402108 | Msa0193590:intron | 25.0% |
| ! | AAACATAGCAATGTGATTTA+TGG | - | chr2_1:9402137-9402156 | None:intergenic | 25.0% |
| !!! | CGTTTTTGCTAATTTTTAGT+TGG | + | chr2_1:9402205-9402224 | Msa0193590:intron | 25.0% |
| ! | AAGAACAAAACAGAAAAAGA+AGG | - | chr2_1:9402299-9402318 | None:intergenic | 25.0% |
| !! | TTGATGTTAATTTCAAGTCA+AGG | - | chr2_1:9402372-9402391 | None:intergenic | 25.0% |
| ! | AACACTTGAAACTATTGTAT+GGG | - | chr2_1:9402736-9402755 | None:intergenic | 25.0% |
| ! | AAACACTTGAAACTATTGTA+TGG | - | chr2_1:9402737-9402756 | None:intergenic | 25.0% |
| !!! | GAATTTAACTTTTGTGGTTT+AGG | - | chr2_1:9403189-9403208 | None:intergenic | 25.0% |
| ! | CAACAATTCTTTATCCAAAT+AGG | + | chr2_1:9403284-9403303 | Msa0193590:CDS | 25.0% |
| ! | CATAATAATTCACATGTCTA+AGG | - | chr2_1:9403901-9403920 | None:intergenic | 25.0% |
| !! | TTATGACTTTCTTATTTGGA+TGG | + | chr2_1:9403933-9403952 | Msa0193590:intron | 25.0% |
| CAATATATGAAACTTGGGTA+TGG | + | chr2_1:9400639-9400658 | Msa0193590:intron | 30.0% | |
| !!! | GTTTCTTTTGCTGTTTTGAT+TGG | + | chr2_1:9400919-9400938 | Msa0193590:five_prime_UTR | 30.0% |
| !! | TCCAAGTTTCGTTGTTTTAT+TGG | + | chr2_1:9400970-9400989 | Msa0193590:five_prime_UTR | 30.0% |
| TCCAATAAAACAACGAAACT+TGG | - | chr2_1:9400974-9400993 | None:intergenic | 30.0% | |
| TGTCCTTATTGTTATAGTGA+CGG | + | chr2_1:9401313-9401332 | Msa0193590:intron | 30.0% | |
| ! | CACTGAATTTTGGATTCAAA+TGG | + | chr2_1:9401621-9401640 | Msa0193590:intron | 30.0% |
| TTGCTTAAAACAGTCATTCT+AGG | - | chr2_1:9401738-9401757 | None:intergenic | 30.0% | |
| !! | TAGAATGACTGTTTTAAGCA+AGG | + | chr2_1:9401737-9401756 | Msa0193590:CDS | 30.0% |
| TGCATGTGAAATCATTTGAT+TGG | + | chr2_1:9401775-9401794 | Msa0193590:CDS | 30.0% | |
| TTGTTGATATTGTGGACAAA+TGG | + | chr2_1:9401914-9401933 | Msa0193590:intron | 30.0% | |
| TGTTGATATTGTGGACAAAT+GGG | + | chr2_1:9401915-9401934 | Msa0193590:intron | 30.0% | |
| ! | AGGTTTTTGAACCGTTATTA+CGG | - | chr2_1:9401951-9401970 | None:intergenic | 30.0% |
| GTTCAAAAACCTAGACATTA+TGG | + | chr2_1:9401959-9401978 | Msa0193590:intron | 30.0% | |
| !!! | ACATGCGAGGTTTTAAATTA+TGG | - | chr2_1:9401997-9402016 | None:intergenic | 30.0% |
| ! | ACTACATGTAGATTAGCTAT+AGG | + | chr2_1:9402056-9402075 | Msa0193590:intron | 30.0% |
| !! | TTTTAGGTGGAGTAAGATTT+GGG | + | chr2_1:9402273-9402292 | Msa0193590:intron | 30.0% |
| CTTGAAATTAACATCAACAG+AGG | + | chr2_1:9402375-9402394 | Msa0193590:intron | 30.0% | |
| TGGAGACATGTTAAACTATT+GGG | - | chr2_1:9402424-9402443 | None:intergenic | 30.0% | |
| TTCTCCAACAATTTATCTAG+TGG | - | chr2_1:9402444-9402463 | None:intergenic | 30.0% | |
| CGTTGAAATCGATATCTATT+AGG | + | chr2_1:9402577-9402596 | Msa0193590:intron | 30.0% | |
| ATAGAATGCTATGATTTGAG+TGG | + | chr2_1:9402604-9402623 | Msa0193590:intron | 30.0% | |
| !! | TTTTGCTAAGTTTTTTGACG+AGG | + | chr2_1:9402679-9402698 | Msa0193590:intron | 30.0% |
| !! | TGGTCTAATGGATGTTATTT+TGG | + | chr2_1:9403006-9403025 | Msa0193590:intron | 30.0% |
| !!! | GGTCTAATGGATGTTATTTT+GGG | + | chr2_1:9403007-9403026 | Msa0193590:intron | 30.0% |
| ! | AAACCATAAATACGTCGATT+TGG | - | chr2_1:9403056-9403075 | None:intergenic | 30.0% |
| TAAAGAATTGTTGTGTCACA+AGG | - | chr2_1:9403277-9403296 | None:intergenic | 30.0% | |
| ATTCTTTATCCAAATAGGGA+TGG | + | chr2_1:9403289-9403308 | Msa0193590:CDS | 30.0% | |
| TCATTGGAAGAAGAAGTAAA+TGG | + | chr2_1:9403376-9403395 | Msa0193590:CDS | 30.0% | |
| TGTTAAAAATGTAGTGCTTG+AGG | + | chr2_1:9403539-9403558 | Msa0193590:intron | 30.0% | |
| CATTTGTTCTTATACAGCAT+TGG | + | chr2_1:9403683-9403702 | Msa0193590:three_prime_UTR | 30.0% | |
| GTTTATCTTTCTGTTTGGTA+TGG | + | chr2_1:9403752-9403771 | Msa0193590:three_prime_UTR | 30.0% | |
| ! | TTATGCTGAACATAGTTCTA+TGG | + | chr2_1:9403957-9403976 | Msa0193590:three_prime_UTR | 30.0% |
| GTAATACGTGAAACATTGGT+TGG | - | chr2_1:9400511-9400530 | None:intergenic | 35.0% | |
| GAGTGTAATACGTGAAACAT+TGG | - | chr2_1:9400515-9400534 | None:intergenic | 35.0% | |
| TTGGATCCAAAATATCACTC+AGG | - | chr2_1:9400955-9400974 | None:intergenic | 35.0% | |
| AGATTGTACCTAAAACGGTT+CGG | - | chr2_1:9401139-9401158 | None:intergenic | 35.0% | |
| GGATCAGATTGTACCTAAAA+CGG | - | chr2_1:9401144-9401163 | None:intergenic | 35.0% | |
| GTCCTTATTGTTATAGTGAC+GGG | + | chr2_1:9401314-9401333 | Msa0193590:intron | 35.0% | |
| ACGGCAATGCAGTTTATAAA+AGG | - | chr2_1:9401356-9401375 | None:intergenic | 35.0% | |
| ! | TTTTATAAACTGCATTGCCG+TGG | + | chr2_1:9401355-9401374 | Msa0193590:intron | 35.0% |
| AGTTGGAAACGTTCTATGAA+TGG | + | chr2_1:9401434-9401453 | Msa0193590:CDS | 35.0% | |
| ! | GTTCTATGAATGGTGGAAAT+GGG | + | chr2_1:9401444-9401463 | Msa0193590:CDS | 35.0% |
| AGGTGAATGTACTTAATAGG+AGG | - | chr2_1:9401491-9401510 | None:intergenic | 35.0% | |
| TGCAGGTGAATGTACTTAAT+AGG | - | chr2_1:9401494-9401513 | None:intergenic | 35.0% | |
| !! | ATTCTAGGATGATCATGAAG+CGG | - | chr2_1:9401723-9401742 | None:intergenic | 35.0% |
| !! | GTTTTAAGCAAGGTTCTCTA+TGG | + | chr2_1:9401747-9401766 | Msa0193590:CDS | 35.0% |
| TATCAACAATTGCAGAGTAG+TGG | - | chr2_1:9401903-9401922 | None:intergenic | 35.0% | |
| CTCTGCAATTGTTGATATTG+TGG | + | chr2_1:9401906-9401925 | Msa0193590:intron | 35.0% | |
| GTTGATATTGTGGACAAATG+GGG | + | chr2_1:9401916-9401935 | Msa0193590:intron | 35.0% | |
| AAATTGCAGCCATAATGTCT+AGG | - | chr2_1:9401971-9401990 | None:intergenic | 35.0% | |
| ! | AGACATTATGGCTGCAATTT+TGG | + | chr2_1:9401971-9401990 | Msa0193590:intron | 35.0% |
| AGGACAGTAGCTGTATAATT+TGG | + | chr2_1:9402076-9402095 | Msa0193590:intron | 35.0% | |
| ! | ATTGCACTTGAGCAACTTTT+AGG | + | chr2_1:9402257-9402276 | Msa0193590:intron | 35.0% |
| !! | CTTTTAGGTGGAGTAAGATT+TGG | + | chr2_1:9402272-9402291 | Msa0193590:intron | 35.0% |
| TTGAAGAGGTCTATAAAGAC+AGG | - | chr2_1:9402341-9402360 | None:intergenic | 35.0% | |
| TGTCTTTATAGACCTCTTCA+AGG | + | chr2_1:9402340-9402359 | Msa0193590:intron | 35.0% | |
| GTCTTTATAGACCTCTTCAA+GGG | + | chr2_1:9402341-9402360 | Msa0193590:intron | 35.0% | |
| TCTTTATAGACCTCTTCAAG+GGG | + | chr2_1:9402342-9402361 | Msa0193590:intron | 35.0% | |
| GTGGAGACATGTTAAACTAT+TGG | - | chr2_1:9402425-9402444 | None:intergenic | 35.0% | |
| GTCTCCACTAGATAAATTGT+TGG | + | chr2_1:9402437-9402456 | Msa0193590:intron | 35.0% | |
| AATCAATTGCCTTTGTCACT+TGG | + | chr2_1:9402470-9402489 | Msa0193590:intron | 35.0% | |
| AGATAGTTACCAAGTGACAA+AGG | - | chr2_1:9402482-9402501 | None:intergenic | 35.0% | |
| ATGACAAGATTGAAAGTGAG+AGG | - | chr2_1:9402523-9402542 | None:intergenic | 35.0% | |
| CTCACTTTCAATCTTGTCAT+TGG | + | chr2_1:9402523-9402542 | Msa0193590:intron | 35.0% | |
| !! | TGAGTGGATTGTCTAAATGT+CGG | + | chr2_1:9402620-9402639 | Msa0193590:intron | 35.0% |
| AGATCGGACAATCCAAAATT+TGG | + | chr2_1:9402860-9402879 | Msa0193590:intron | 35.0% | |
| ! | TCACTCAGTCAACCAAATTT+TGG | - | chr2_1:9402875-9402894 | None:intergenic | 35.0% |
| TTACTGGAAGCAAATATCTG+AGG | - | chr2_1:9402986-9403005 | None:intergenic | 35.0% | |
| CAGATATTTGCTTCCAGTAA+TGG | + | chr2_1:9402986-9403005 | Msa0193590:intron | 35.0% | |
| AACATCCATTAGACCATTAC+TGG | - | chr2_1:9403002-9403021 | None:intergenic | 35.0% | |
| ATGCCAAATCGACGTATTTA+TGG | + | chr2_1:9403050-9403069 | Msa0193590:intron | 35.0% | |
| ! | CAATCTTTGACAAGTTTTGC+TGG | - | chr2_1:9403241-9403260 | None:intergenic | 35.0% |
| ACTTCTTCTTCCAATGAGTA+AGG | - | chr2_1:9403373-9403392 | None:intergenic | 35.0% | |
| TTCCCAATAATCAAATCGCT+AGG | - | chr2_1:9403618-9403637 | None:intergenic | 35.0% | |
| AGCGATTTGATTATTGGGAA+TGG | + | chr2_1:9403618-9403637 | Msa0193590:CDS | 35.0% | |
| GCGATTTGATTATTGGGAAT+GGG | + | chr2_1:9403619-9403638 | Msa0193590:CDS | 35.0% | |
| AATACAGAGGCCCTAATATT+CGG | + | chr2_1:9403643-9403662 | Msa0193590:CDS | 35.0% | |
| ! | TTTACCTGGTTGGAACATTT+TGG | + | chr2_1:9403724-9403743 | Msa0193590:three_prime_UTR | 35.0% |
| ATTTCCAAAATGTTCCAACC+AGG | - | chr2_1:9403731-9403750 | None:intergenic | 35.0% | |
| GTACAGACTATGATAAATGC+TGG | + | chr2_1:9403788-9403807 | Msa0193590:three_prime_UTR | 35.0% | |
| GAAAGGGAAAACTAGAAACA+TGG | - | chr2_1:9403832-9403851 | None:intergenic | 35.0% | |
| CCGCAGTTATAATCTAGAAA+GGG | - | chr2_1:9403848-9403867 | None:intergenic | 35.0% | |
| CCCTTTCTAGATTATAACTG+CGG | + | chr2_1:9403845-9403864 | Msa0193590:three_prime_UTR | 35.0% | |
| ! | TAGCGACCTGAGTGATATTT+TGG | + | chr2_1:9400946-9400965 | Msa0193590:five_prime_UTR | 40.0% |
| GAAATTGTATGACGTCTGCA+AGG | + | chr2_1:9401064-9401083 | Msa0193590:CDS | 40.0% | |
| ! | GAAAAAGTCCGAACCGTTTT+AGG | + | chr2_1:9401128-9401147 | Msa0193590:CDS | 40.0% |
| CACCCGTCACTATAACAATA+AGG | - | chr2_1:9401319-9401338 | None:intergenic | 40.0% | |
| CTCATAGTCAAGACCGATAT+GGG | - | chr2_1:9401399-9401418 | None:intergenic | 40.0% | |
| TGGAAACGTTCTATGAATGG+TGG | + | chr2_1:9401437-9401456 | Msa0193590:CDS | 40.0% | |
| ! | CGTTCTATGAATGGTGGAAA+TGG | + | chr2_1:9401443-9401462 | Msa0193590:CDS | 40.0% |
| ! | AATGGTGGAAATGGGAGAAT+TGG | + | chr2_1:9401452-9401471 | Msa0193590:CDS | 40.0% |
| !! | ACAATAAGGAGTGTCACCTT+GGG | - | chr2_1:9401829-9401848 | None:intergenic | 40.0% |
| !! | TACAATAAGGAGTGTCACCT+TGG | - | chr2_1:9401830-9401849 | None:intergenic | 40.0% |
| CAATTATGATCACACATGCG+AGG | - | chr2_1:9402010-9402029 | None:intergenic | 40.0% | |
| CTCGCATGTGTGATCATAAT+TGG | + | chr2_1:9402008-9402027 | Msa0193590:intron | 40.0% | |
| CTGTAAACGGTCATCTAGAT+AGG | - | chr2_1:9402177-9402196 | None:intergenic | 40.0% | |
| AATACAGAGCAGAAAACCAG+CGG | - | chr2_1:9402554-9402573 | None:intergenic | 40.0% | |
| TGCTTCCAGTAATGGTCTAA+TGG | + | chr2_1:9402994-9403013 | Msa0193590:intron | 40.0% | |
| !! | TTATGGCTTTGAAGCAATGG+AGG | - | chr2_1:9403318-9403337 | None:intergenic | 40.0% |
| TTCTTCCAATGAGTAAGGAG+GGG | - | chr2_1:9403368-9403387 | None:intergenic | 40.0% | |
| CTTCTTCCAATGAGTAAGGA+GGG | - | chr2_1:9403369-9403388 | None:intergenic | 40.0% | |
| TCTTCTTCCAATGAGTAAGG+AGG | - | chr2_1:9403370-9403389 | None:intergenic | 40.0% | |
| ! | TGAGTTCATCTGAAATCACC+TGG | + | chr2_1:9403574-9403593 | Msa0193590:CDS | 40.0% |
| CCAATAATCAAATCGCTAGG+CGG | - | chr2_1:9403615-9403634 | None:intergenic | 40.0% | |
| CGCCTAGCGATTTGATTATT+GGG | + | chr2_1:9403613-9403632 | Msa0193590:CDS | 40.0% | |
| TCCTTCATCGCCGAATATTA+GGG | - | chr2_1:9403656-9403675 | None:intergenic | 40.0% | |
| !! | GTTCTTATACAGCATTGGTC+AGG | + | chr2_1:9403688-9403707 | Msa0193590:three_prime_UTR | 40.0% |
| GCTTGACAAGAAACTTTACC+TGG | + | chr2_1:9403710-9403729 | Msa0193590:three_prime_UTR | 40.0% | |
| GACAAGAAACTTTACCTGGT+TGG | + | chr2_1:9403714-9403733 | Msa0193590:three_prime_UTR | 40.0% | |
| GCCGCAGTTATAATCTAGAA+AGG | - | chr2_1:9403849-9403868 | None:intergenic | 40.0% | |
| TCTAGATTATAACTGCGGCA+TGG | + | chr2_1:9403850-9403869 | Msa0193590:three_prime_UTR | 40.0% | |
| TTGTTGTCTGTCTCTCACTC+TGG | + | chr2_1:9400415-9400434 | Msa0193590:five_prime_UTR | 45.0% | |
| AGAGAGTCACGACATAATCG+AGG | - | chr2_1:9400482-9400501 | None:intergenic | 45.0% | |
| !! | TTCTGAAATAGGTCCCTCAG+TGG | - | chr2_1:9401099-9401118 | None:intergenic | 45.0% |
| TGAGGGACCTATTTCAGAAG+AGG | + | chr2_1:9401100-9401119 | Msa0193590:CDS | 45.0% | |
| !! | TCGAGAGCCTCTTCTGAAAT+AGG | - | chr2_1:9401110-9401129 | None:intergenic | 45.0% |
| TAGTCAAGACCGATATGGGA+AGG | - | chr2_1:9401395-9401414 | None:intergenic | 45.0% | |
| CCTCATAGTCAAGACCGATA+TGG | - | chr2_1:9401400-9401419 | None:intergenic | 45.0% | |
| CCATATCGGTCTTGACTATG+AGG | + | chr2_1:9401397-9401416 | Msa0193590:CDS | 45.0% | |
| TACTTAATAGGAGGACCCTC+AGG | - | chr2_1:9401482-9401501 | None:intergenic | 45.0% | |
| AGAACTTGTCACATTCGTGC+AGG | - | chr2_1:9401511-9401530 | None:intergenic | 45.0% | |
| ! | GGAGTATTCTGTATGTCTCC+TGG | + | chr2_1:9401687-9401706 | Msa0193590:CDS | 45.0% |
| TGAAGCGGAATCAAAGAACC+AGG | - | chr2_1:9401708-9401727 | None:intergenic | 45.0% | |
| ! | GCACTTGAGCAACTTTTAGG+TGG | + | chr2_1:9402260-9402279 | Msa0193590:intron | 45.0% |
| TCAAGGATTACCCCTTGAAG+AGG | - | chr2_1:9402355-9402374 | None:intergenic | 45.0% | |
| TGTTCCTACCTATACCGTTG+AGG | + | chr2_1:9402772-9402791 | Msa0193590:intron | 45.0% | |
| GTTCCTACCTATACCGTTGA+GGG | + | chr2_1:9402773-9402792 | Msa0193590:intron | 45.0% | |
| TTCCTACCTATACCGTTGAG+GGG | + | chr2_1:9402774-9402793 | Msa0193590:intron | 45.0% | |
| ATTGTCCGATCTTGATCCAC+CGG | - | chr2_1:9402852-9402871 | None:intergenic | 45.0% | |
| TTGCACACAATCCAAATCCG+TGG | + | chr2_1:9402895-9402914 | Msa0193590:intron | 45.0% | |
| TGAAGACCCCTTAGAGTAGT+GGG | + | chr2_1:9402918-9402937 | Msa0193590:intron | 45.0% | |
| !! | GGGTTATGGCTTTGAAGCAA+TGG | - | chr2_1:9403321-9403340 | None:intergenic | 45.0% |
| ! | AATGTCGAAGAGAGCACAAG+GGG | - | chr2_1:9403341-9403360 | None:intergenic | 45.0% |
| ! | GAATGTCGAAGAGAGCACAA+GGG | - | chr2_1:9403342-9403361 | None:intergenic | 45.0% |
| ! | AGAATGTCGAAGAGAGCACA+AGG | - | chr2_1:9403343-9403362 | None:intergenic | 45.0% |
| TCTTACCCCTCCTTACTCAT+TGG | + | chr2_1:9403360-9403379 | Msa0193590:CDS | 45.0% | |
| !! | AGAAGGAAGAGAGAAGTACC+TGG | - | chr2_1:9403445-9403464 | None:intergenic | 45.0% |
| ATAATCAAATCGCTAGGCGG+CGG | - | chr2_1:9403612-9403631 | None:intergenic | 45.0% | |
| CCGCCTAGCGATTTGATTAT+TGG | + | chr2_1:9403612-9403631 | Msa0193590:CDS | 45.0% | |
| ATTGGGAATGGGCAATACAG+AGG | + | chr2_1:9403630-9403649 | Msa0193590:CDS | 45.0% | |
| CTCCTTCATCGCCGAATATT+AGG | - | chr2_1:9403657-9403676 | None:intergenic | 45.0% | |
| GAGAGACACGAGAAGAGAAC+AGG | - | chr2_1:9400447-9400466 | None:intergenic | 50.0% | |
| AAGGCTTCCTTGTCCACTGA+GGG | + | chr2_1:9401083-9401102 | Msa0193590:CDS | 50.0% | |
| AATAGGTCCCTCAGTGGACA+AGG | - | chr2_1:9401093-9401112 | None:intergenic | 50.0% | |
| GGGTTGAAGCCTTCCCATAT+CGG | + | chr2_1:9401383-9401402 | Msa0193590:CDS | 50.0% | |
| TCTTGACTATGAGGCGCAAC+TGG | + | chr2_1:9401406-9401425 | Msa0193590:CDS | 50.0% | |
| TGGGAGAATTGGAACTCCTG+AGG | + | chr2_1:9401463-9401482 | Msa0193590:CDS | 50.0% | |
| GGGAGAATTGGAACTCCTGA+GGG | + | chr2_1:9401464-9401483 | Msa0193590:CDS | 50.0% | |
| !! | GTGGACAAATGGGGTTGATG+CGG | + | chr2_1:9401925-9401944 | Msa0193590:intron | 50.0% |
| ! | GGTTGATGCGGCCGTAATAA+CGG | + | chr2_1:9401937-9401956 | Msa0193590:intron | 50.0% |
| AACCCCTCAACGGTATAGGT+AGG | - | chr2_1:9402779-9402798 | None:intergenic | 50.0% | |
| TACCTATACCGTTGAGGGGT+TGG | + | chr2_1:9402778-9402797 | Msa0193590:intron | 50.0% | |
| !! | AGGGGTTGGTGAAGGGATTA+GGG | + | chr2_1:9402792-9402811 | Msa0193590:intron | 50.0% |
| AGTCACGCAGTTAGCCACAT+CGG | + | chr2_1:9402823-9402842 | Msa0193590:intron | 50.0% | |
| ! | ACTCTAAGGGGTCTTCACCA+CGG | - | chr2_1:9402915-9402934 | None:intergenic | 50.0% |
| GTGAAGACCCCTTAGAGTAG+TGG | + | chr2_1:9402917-9402936 | Msa0193590:intron | 50.0% | |
| ACCTGTCCCACTACTCTAAG+GGG | - | chr2_1:9402927-9402946 | None:intergenic | 50.0% | |
| CACCTGTCCCACTACTCTAA+GGG | - | chr2_1:9402928-9402947 | None:intergenic | 50.0% | |
| TGGAGGTTGCCATCCCTATT+TGG | - | chr2_1:9403301-9403320 | None:intergenic | 50.0% | |
| ! | GAAGAGAGCACAAGGGGTTA+TGG | - | chr2_1:9403335-9403354 | None:intergenic | 50.0% |
| CTTATTTCCGCAAGTCGCTG+AGG | + | chr2_1:9403410-9403429 | Msa0193590:CDS | 50.0% | |
| ! | CGGCGGAATCTTTTCTAACC+AGG | - | chr2_1:9403595-9403614 | None:intergenic | 50.0% |
| GCCCTAATATTCGGCGATGA+AGG | + | chr2_1:9403652-9403671 | Msa0193590:CDS | 50.0% | |
| CAAGGCTTCCTTGTCCACTG+AGG | + | chr2_1:9401082-9401101 | Msa0193590:CDS | 55.0% | |
| AACTGCATTGCCGTGGCAGA+TGG | + | chr2_1:9401362-9401381 | Msa0193590:intron | 55.0% | |
| ACTGCATTGCCGTGGCAGAT+GGG | + | chr2_1:9401363-9401382 | Msa0193590:intron | 55.0% | |
| AGGCTTCAACCCATCTGCCA+CGG | - | chr2_1:9401375-9401394 | None:intergenic | 55.0% | |
| TGGGATAGATCGCATGACGC+AGG | - | chr2_1:9401810-9401829 | None:intergenic | 55.0% | |
| GCGTCATGCGATCTATCCCA+AGG | + | chr2_1:9401810-9401829 | Msa0193590:CDS | 55.0% | |
| CTTGTCATTGGTACTGCCGC+TGG | + | chr2_1:9402535-9402554 | Msa0193590:intron | 55.0% | |
| CACCAACCCCTCAACGGTAT+AGG | - | chr2_1:9402783-9402802 | None:intergenic | 55.0% | |
| !! | TACCGTTGAGGGGTTGGTGA+AGG | + | chr2_1:9402784-9402803 | Msa0193590:intron | 55.0% |
| !! | ACCGTTGAGGGGTTGGTGAA+GGG | + | chr2_1:9402785-9402804 | Msa0193590:intron | 55.0% |
| TCCCTTCACCAACCCCTCAA+CGG | - | chr2_1:9402789-9402808 | None:intergenic | 55.0% | |
| !! | GAGGGGTTGGTGAAGGGATT+AGG | + | chr2_1:9402791-9402810 | Msa0193590:intron | 55.0% |
| AGGGGTCTTCACCACGGATT+TGG | - | chr2_1:9402909-9402928 | None:intergenic | 55.0% | |
| ! | ACCCCTTAGAGTAGTGGGAC+AGG | + | chr2_1:9402923-9402942 | Msa0193590:intron | 55.0% |
| GCACCTGTCCCACTACTCTA+AGG | - | chr2_1:9402929-9402948 | None:intergenic | 55.0% | |
| ! | AGAGTAGTGGGACAGGTGCA+TGG | + | chr2_1:9402930-9402949 | Msa0193590:intron | 55.0% |
| GATCTGTCCTCAGCGACTTG+CGG | - | chr2_1:9403420-9403439 | None:intergenic | 55.0% | |
| TCGCTGAGGACAGATCTTCC+AGG | + | chr2_1:9403424-9403443 | Msa0193590:CDS | 55.0% | |
| GTAGTGCTTGAGGAGCTGCA+CGG | + | chr2_1:9403549-9403568 | Msa0193590:intron | 55.0% | |
| TAGTGCTTGAGGAGCTGCAC+GGG | + | chr2_1:9403550-9403569 | Msa0193590:intron | 55.0% | |
| CAGTTAGCCACATCGGCGTC+CGG | + | chr2_1:9402830-9402849 | Msa0193590:intron | 60.0% | |
| GGCGTCCGGTGGATCAAGAT+CGG | + | chr2_1:9402844-9402863 | Msa0193590:intron | 60.0% | |
| TGGGACAGGTGCATGGCAGT+AGG | + | chr2_1:9402937-9402956 | Msa0193590:intron | 60.0% | |
| AGGCGCAACTGGCGCGAAGT+TGG | + | chr2_1:9401417-9401436 | Msa0193590:CDS | 65.0% | |
| TTAGCCACATCGGCGTCCGG+TGG | + | chr2_1:9402833-9402852 | Msa0193590:intron | 65.0% | |
| TGATCCACCGGACGCCGATG+TGG | - | chr2_1:9402840-9402859 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 9400379 | 9403991 | 9400379 | ID=Msa0193590;Name=Msa0193590 |
| chr2_1 | mRNA | 9400379 | 9403991 | 9400379 | ID=Msa0193590-mRNA-1;Parent=Msa0193590;Name=Msa0193590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=343|1|1|1|0.66|0.42|7|300|245 |
| chr2_1 | exon | 9400379 | 9400523 | 9400379 | ID=Msa0193590-mRNA-1:exon:4325;Parent=Msa0193590-mRNA-1 |
| chr2_1 | exon | 9400852 | 9401149 | 9400852 | ID=Msa0193590-mRNA-1:exon:4326;Parent=Msa0193590-mRNA-1 |
| chr2_1 | exon | 9401381 | 9401532 | 9401381 | ID=Msa0193590-mRNA-1:exon:4327;Parent=Msa0193590-mRNA-1 |
| chr2_1 | exon | 9401684 | 9401831 | 9401684 | ID=Msa0193590-mRNA-1:exon:4328;Parent=Msa0193590-mRNA-1 |
| chr2_1 | exon | 9403227 | 9403445 | 9403227 | ID=Msa0193590-mRNA-1:exon:4329;Parent=Msa0193590-mRNA-1 |
| chr2_1 | exon | 9403553 | 9403924 | 9403553 | ID=Msa0193590-mRNA-1:exon:4330;Parent=Msa0193590-mRNA-1 |
| chr2_1 | exon | 9403945 | 9403991 | 9403945 | ID=Msa0193590-mRNA-1:exon:4331;Parent=Msa0193590-mRNA-1 |
| chr2_1 | five_prime_UTR | 9400379 | 9400523 | 9400379 | ID=Msa0193590-mRNA-1:five_prime_utr;Parent=Msa0193590-mRNA-1 |
| chr2_1 | five_prime_UTR | 9400852 | 9401049 | 9400852 | ID=Msa0193590-mRNA-1:five_prime_utr;Parent=Msa0193590-mRNA-1 |
| chr2_1 | CDS | 9401050 | 9401149 | 9401050 | ID=Msa0193590-mRNA-1:cds;Parent=Msa0193590-mRNA-1 |
| chr2_1 | CDS | 9401381 | 9401532 | 9401381 | ID=Msa0193590-mRNA-1:cds;Parent=Msa0193590-mRNA-1 |
| chr2_1 | CDS | 9401684 | 9401831 | 9401684 | ID=Msa0193590-mRNA-1:cds;Parent=Msa0193590-mRNA-1 |
| chr2_1 | CDS | 9403227 | 9403445 | 9403227 | ID=Msa0193590-mRNA-1:cds;Parent=Msa0193590-mRNA-1 |
| chr2_1 | CDS | 9403553 | 9403671 | 9403553 | ID=Msa0193590-mRNA-1:cds;Parent=Msa0193590-mRNA-1 |
| chr2_1 | three_prime_UTR | 9403672 | 9403924 | 9403672 | ID=Msa0193590-mRNA-1:three_prime_utr;Parent=Msa0193590-mRNA-1 |
| chr2_1 | three_prime_UTR | 9403945 | 9403991 | 9403945 | ID=Msa0193590-mRNA-1:three_prime_utr;Parent=Msa0193590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
