Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193720 | XP_013462585.1 | 98.286 | 525 | 8 | 1 | 1 | 525 | 1 | 524 | 0.0 | 1050 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193720 | sp|Q94C70|NAT2_ARATH | 81.524 | 525 | 96 | 1 | 1 | 525 | 1 | 524 | 0.0 | 897 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193720 | A0A072VEL5 | 98.286 | 525 | 8 | 1 | 1 | 525 | 1 | 524 | 0.0 | 1050 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0193720 | Msa0274650 | 0.818816 | 1.609299e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193720 | MtrunA17_Chr2g0284061 | 98.286 | 525 | 8 | 1 | 1 | 525 | 1 | 524 | 0.0 | 1050 |
Msa0193720 | MtrunA17_Chr8g0379171 | 83.619 | 525 | 85 | 1 | 1 | 525 | 1 | 524 | 0.0 | 914 |
Msa0193720 | MtrunA17_Chr3g0119521 | 69.515 | 515 | 156 | 1 | 12 | 525 | 6 | 520 | 0.0 | 760 |
Msa0193720 | MtrunA17_Chr8g0364611 | 59.770 | 522 | 208 | 1 | 4 | 523 | 10 | 531 | 0.0 | 650 |
Msa0193720 | MtrunA17_Chr3g0117941 | 58.157 | 521 | 216 | 1 | 5 | 523 | 10 | 530 | 0.0 | 625 |
Msa0193720 | MtrunA17_Chr4g0059331 | 57.935 | 523 | 218 | 1 | 3 | 523 | 8 | 530 | 0.0 | 620 |
Msa0193720 | MtrunA17_Chr5g0414131 | 56.214 | 523 | 226 | 2 | 4 | 523 | 14 | 536 | 0.0 | 595 |
Msa0193720 | MtrunA17_Chr1g0154001 | 54.706 | 510 | 231 | 0 | 14 | 523 | 36 | 545 | 0.0 | 581 |
Msa0193720 | MtrunA17_Chr1g0207021 | 54.286 | 525 | 233 | 4 | 2 | 523 | 5 | 525 | 0.0 | 567 |
Msa0193720 | MtrunA17_Chr3g0134911 | 48.029 | 558 | 243 | 5 | 5 | 523 | 34 | 583 | 0.0 | 543 |
Msa0193720 | MtrunA17_Chr5g0405471 | 50.943 | 530 | 238 | 5 | 12 | 523 | 35 | 560 | 0.0 | 535 |
Msa0193720 | MtrunA17_Chr8g0367361 | 34.720 | 553 | 321 | 6 | 2 | 522 | 224 | 768 | 3.60e-109 | 342 |
Msa0193720 | MtrunA17_Chr5g0412181 | 35.741 | 526 | 302 | 5 | 25 | 518 | 172 | 693 | 1.38e-104 | 328 |
Msa0193720 | MtrunA17_Chr2g0320981 | 35.261 | 536 | 309 | 5 | 21 | 522 | 147 | 678 | 4.63e-103 | 324 |
Msa0193720 | MtrunA17_Chr4g0027121 | 35.075 | 536 | 311 | 6 | 21 | 522 | 154 | 686 | 2.62e-99 | 314 |
Msa0193720 | MtrunA17_Chr2g0332871 | 33.004 | 506 | 287 | 8 | 41 | 522 | 166 | 643 | 6.24e-91 | 291 |
Msa0193720 | MtrunA17_Chr8g0379181 | 83.333 | 54 | 9 | 0 | 402 | 455 | 9 | 62 | 2.02e-23 | 93.6 |
Msa0193720 | MtrunA17_Chr5g0418111 | 66.071 | 56 | 19 | 0 | 456 | 511 | 39 | 94 | 1.49e-19 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193720 | AT2G34190.1 | 81.524 | 525 | 96 | 1 | 1 | 525 | 1 | 524 | 0.0 | 897 |
Msa0193720 | AT2G05760.1 | 66.408 | 515 | 172 | 1 | 12 | 525 | 6 | 520 | 0.0 | 736 |
Msa0193720 | AT5G62890.1 | 57.744 | 523 | 219 | 1 | 3 | 523 | 8 | 530 | 0.0 | 620 |
Msa0193720 | AT5G62890.2 | 57.744 | 523 | 219 | 1 | 3 | 523 | 8 | 530 | 0.0 | 620 |
Msa0193720 | AT5G62890.3 | 57.744 | 523 | 219 | 1 | 3 | 523 | 8 | 530 | 0.0 | 620 |
Msa0193720 | AT1G60030.1 | 56.430 | 521 | 225 | 1 | 5 | 523 | 16 | 536 | 0.0 | 615 |
Msa0193720 | AT2G26510.1 | 55.664 | 512 | 226 | 1 | 13 | 523 | 36 | 547 | 0.0 | 584 |
Msa0193720 | AT1G10540.1 | 53.244 | 524 | 240 | 3 | 5 | 523 | 14 | 537 | 0.0 | 582 |
Msa0193720 | AT5G49990.2 | 55.513 | 526 | 231 | 2 | 1 | 523 | 1 | 526 | 0.0 | 578 |
Msa0193720 | AT5G49990.3 | 55.513 | 526 | 231 | 2 | 1 | 523 | 1 | 526 | 0.0 | 578 |
Msa0193720 | AT5G49990.1 | 55.513 | 526 | 231 | 2 | 1 | 523 | 1 | 526 | 0.0 | 578 |
Msa0193720 | AT5G49990.4 | 55.513 | 526 | 231 | 2 | 1 | 523 | 1 | 526 | 0.0 | 578 |
Msa0193720 | AT1G49960.1 | 54.685 | 523 | 235 | 1 | 3 | 523 | 2 | 524 | 0.0 | 570 |
Msa0193720 | AT1G65550.1 | 49.432 | 528 | 256 | 3 | 5 | 523 | 14 | 539 | 0.0 | 555 |
Msa0193720 | AT5G62890.4 | 56.954 | 453 | 195 | 0 | 3 | 455 | 8 | 460 | 0.0 | 532 |
Msa0193720 | AT1G10540.2 | 53.867 | 375 | 170 | 2 | 5 | 376 | 14 | 388 | 1.44e-142 | 416 |
Msa0193720 | AT2G26510.3 | 55.769 | 364 | 161 | 0 | 13 | 376 | 36 | 399 | 2.94e-139 | 408 |
Msa0193720 | AT2G26510.2 | 55.556 | 351 | 156 | 0 | 13 | 363 | 36 | 386 | 1.80e-133 | 394 |
Msa0193720 | AT5G25420.1 | 43.119 | 436 | 180 | 5 | 5 | 440 | 26 | 393 | 1.39e-124 | 371 |
Msa0193720 | AT4G38050.1 | 35.206 | 534 | 310 | 5 | 21 | 522 | 175 | 704 | 2.04e-97 | 310 |
Msa0193720 | AT2G27810.1 | 34.630 | 540 | 315 | 6 | 17 | 522 | 166 | 701 | 3.05e-97 | 310 |
Msa0193720 | AT2G27810.4 | 33.156 | 564 | 315 | 7 | 17 | 522 | 166 | 725 | 7.69e-92 | 296 |
Msa0193720 | AT2G27810.2 | 35.681 | 426 | 254 | 4 | 17 | 424 | 166 | 589 | 1.36e-77 | 255 |
Msa0193720 | AT2G27810.3 | 35.884 | 379 | 223 | 4 | 17 | 377 | 166 | 542 | 1.23e-65 | 222 |
Find 162 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAAGCATACAGATTATTT+TGG | 0.131330 | 2_1:+9528890 | Msa0193720:CDS |
TGTCTTTCTTCAGGAAAATT+TGG | 0.180383 | 2_1:+9530468 | Msa0193720:intron |
GGTGTAGAACTCTTCATTTC+TGG | 0.205089 | 2_1:-9531328 | None:intergenic |
GGGAGGGTCTTATGCATTTA+TGG | 0.208667 | 2_1:+9528215 | Msa0193720:CDS |
ATCTTGTTGAATGGACTATT+TGG | 0.208821 | 2_1:+9530168 | Msa0193720:CDS |
GTAATTGCATTATCTGGTTT+TGG | 0.212700 | 2_1:+9529054 | Msa0193720:CDS |
AACAGTGGAGTCAATTATTC+TGG | 0.216307 | 2_1:+9527846 | Msa0193720:intron |
CAATTATATTGTGTTAATTC+TGG | 0.216551 | 2_1:-9529499 | None:intergenic |
TCATGAATAATGGATATAAT+TGG | 0.217336 | 2_1:-9528240 | None:intergenic |
GTTGGACATTGTGTTGAAAT+TGG | 0.250807 | 2_1:+9529201 | Msa0193720:CDS |
TGGCATGATGGCCGCTGTTT+TGG | 0.251529 | 2_1:+9529763 | Msa0193720:CDS |
TTCATTTCTTGTGCCTTTGA+TGG | 0.265215 | 2_1:+9527915 | Msa0193720:CDS |
GTTCCAGTAATTGCATTATC+TGG | 0.268188 | 2_1:+9529048 | Msa0193720:CDS |
ACACTCTTTCAGACACTCTT+TGG | 0.275867 | 2_1:+9528171 | Msa0193720:CDS |
ATTCATTGTTGCTGTGTTCT+TGG | 0.279147 | 2_1:+9531224 | Msa0193720:CDS |
TATAATATTTCTTCTTGCTT+TGG | 0.282010 | 2_1:-9527573 | None:intergenic |
GCATAGATGCAAACCCTTCT+TGG | 0.282942 | 2_1:+9527634 | Msa0193720:CDS |
TCTTCCTTCCATCATTTCAT+TGG | 0.283411 | 2_1:+9527368 | Msa0193720:five_prime_UTR |
TTTGATGTTGGTCATGCTTT+TGG | 0.285521 | 2_1:+9529743 | Msa0193720:CDS |
CCATGGCATTCCCCTATCTT+TGG | 0.286512 | 2_1:-9531274 | None:intergenic |
GTCTTCTATGGAGGCCAATT+TGG | 0.291156 | 2_1:-9528265 | None:intergenic |
TTGTATCAACCACAATGATA+TGG | 0.300612 | 2_1:+9529431 | Msa0193720:CDS |
TGTGTCCTGTTTGGCCTTGT+TGG | 0.301881 | 2_1:+9530537 | Msa0193720:CDS |
CATAGATGCAAACCCTTCTT+GGG | 0.302981 | 2_1:+9527635 | Msa0193720:CDS |
GGCTCATAGTACCTCAATTA+AGG | 0.307644 | 2_1:-9529789 | None:intergenic |
CATTATTCATGACTCCAAAT+TGG | 0.314497 | 2_1:+9528251 | Msa0193720:CDS |
TGACACTGCTGAAATATTAA+TGG | 0.322004 | 2_1:-9527521 | None:intergenic |
AATTATGGGCCATTTGTTCT+AGG | 0.323560 | 2_1:+9528922 | Msa0193720:CDS |
AATAAGCCGAAAATAGCTTT+TGG | 0.326517 | 2_1:-9531671 | None:intergenic |
GTTTAACATTGACTTCTTCA+TGG | 0.331983 | 2_1:+9531536 | Msa0193720:three_prime_UTR |
TTTCTTGGGCTTATCTATTC+CGG | 0.334179 | 2_1:+9530716 | Msa0193720:CDS |
AAACCAGATAATGCAATTAC+TGG | 0.336298 | 2_1:-9529051 | None:intergenic |
TTTGGGCTTTAGTCAATTAT+GGG | 0.341174 | 2_1:+9528908 | Msa0193720:CDS |
AACCAAATGTGGGTCTTCTA+TGG | 0.351482 | 2_1:-9528277 | None:intergenic |
GACTACAAGCCTGTTTGAAT+TGG | 0.353873 | 2_1:+9531571 | Msa0193720:three_prime_UTR |
ACCAAGTTTAGAACATTTCA+TGG | 0.358356 | 2_1:+9531300 | Msa0193720:CDS |
ACAAGAATAGCTCCAAAGAT+AGG | 0.366819 | 2_1:+9531262 | Msa0193720:CDS |
CATAACTTTCGTTGTTAAGA+TGG | 0.369135 | 2_1:-9531381 | None:intergenic |
ATGAGGAGCCTCTTTATTAC+CGG | 0.378181 | 2_1:+9530684 | Msa0193720:CDS |
TTCACTTCCAAGGCCCTTCA+TGG | 0.379152 | 2_1:+9530753 | Msa0193720:CDS |
TTCTGAGCCGCGGTGTTGGC+TGG | 0.386703 | 2_1:+9530133 | Msa0193720:CDS |
CTGCTCATACAAAGGCTAGA+TGG | 0.390049 | 2_1:+9530778 | Msa0193720:CDS |
GGTGTTGGCTGGCAGGGAAT+TGG | 0.392481 | 2_1:+9530144 | Msa0193720:CDS |
CCACCAATGGACCAACTTCA+TGG | 0.399447 | 2_1:+9527600 | Msa0193720:CDS |
TTGTTTATCTGACAGTCAAC+TGG | 0.406456 | 2_1:+9530057 | Msa0193720:intron |
GAGCCGCGGTGTTGGCTGGC+AGG | 0.407123 | 2_1:+9530137 | Msa0193720:CDS |
TCAAATATGCCAATTCAAAC+AGG | 0.410323 | 2_1:-9531580 | None:intergenic |
TCATTTCTTGTGCCTTTGAT+GGG | 0.420771 | 2_1:+9527916 | Msa0193720:CDS |
AGCAGGACCATGAAGGGCCT+TGG | 0.421593 | 2_1:-9530760 | None:intergenic |
TTGGAGGGAAAGGGAAAGTA+AGG | 0.425984 | 2_1:-9527428 | None:intergenic |
CGGTGTTGCACTTGCTAGCC+GGG | 0.429213 | 2_1:-9530097 | None:intergenic |
ACTCACCAACAAGGCCAAAC+AGG | 0.434703 | 2_1:-9530542 | None:intergenic |
AGAGAGAATGTAGGGCTACT+AGG | 0.436990 | 2_1:+9530294 | Msa0193720:intron |
CAATTTGGAGTCATGAATAA+TGG | 0.437433 | 2_1:-9528250 | None:intergenic |
CTCCATAGAAGACCCACATT+TGG | 0.438916 | 2_1:+9528275 | Msa0193720:CDS |
GTAGGAAAACCCCACTCAAA+AGG | 0.440834 | 2_1:-9529719 | None:intergenic |
GCGGTGTTGCACTTGCTAGC+CGG | 0.441312 | 2_1:-9530098 | None:intergenic |
GCTATGTACTGTGTCCTGTT+TGG | 0.442936 | 2_1:+9530528 | Msa0193720:CDS |
ACCTCATTTCTTCTGCTCCA+TGG | 0.445011 | 2_1:+9529539 | Msa0193720:CDS |
CATGAATAATGGATATAATT+GGG | 0.445103 | 2_1:-9528239 | None:intergenic |
TGCACCTTGAACTGCTCTCA+TGG | 0.449979 | 2_1:-9528856 | None:intergenic |
AAGAGAGAGACAATGAGAAA+TGG | 0.452072 | 2_1:-9527349 | None:intergenic |
TCTGTTTGTAGCATTCTCTC+AGG | 0.452906 | 2_1:+9529239 | Msa0193720:CDS |
GGAATTGGAATCTTGTTGAA+TGG | 0.453442 | 2_1:+9530159 | Msa0193720:CDS |
CATGTTCTGAGCCGCGGTGT+TGG | 0.457466 | 2_1:+9530129 | Msa0193720:CDS |
AATTAACACAATATAATTGC+AGG | 0.457977 | 2_1:+9529503 | Msa0193720:CDS |
GAATAGATAAGCCCAAGAAA+AGG | 0.462489 | 2_1:-9530713 | None:intergenic |
CAAGAATAGCTCCAAAGATA+GGG | 0.463643 | 2_1:+9531263 | Msa0193720:CDS |
GGACTATTTGGAACACTGAC+TGG | 0.466218 | 2_1:+9530180 | Msa0193720:CDS |
CTTATTTCTATAAGCTCTCT+AGG | 0.469989 | 2_1:+9531688 | Msa0193720:three_prime_UTR |
AATAAATTACCTAGAACAAA+TGG | 0.470454 | 2_1:-9528931 | None:intergenic |
ACAAAGTGTTGCTTAAATCA+TGG | 0.473081 | 2_1:+9527545 | Msa0193720:exon |
TGAAATATTAATGGCTATGA+AGG | 0.474957 | 2_1:-9527512 | None:intergenic |
TGTATCAACCACAATGATAT+GGG | 0.477279 | 2_1:+9529432 | Msa0193720:CDS |
AGCCGCGGTGTTGGCTGGCA+GGG | 0.477678 | 2_1:+9530138 | Msa0193720:CDS |
CCCTTCCTTTCAACCTCCAC+CGG | 0.480141 | 2_1:+9531349 | Msa0193720:CDS |
TTCAGACACTCTTTGGAACT+CGG | 0.481780 | 2_1:+9528178 | Msa0193720:CDS |
TCCATGAAATGTTCTAAACT+TGG | 0.485703 | 2_1:-9531301 | None:intergenic |
AGAAACAACTTTGGAGGGAA+AGG | 0.489318 | 2_1:-9527438 | None:intergenic |
AGAGTCATTCAAATTTCAGC+AGG | 0.489686 | 2_1:+9530339 | Msa0193720:CDS |
TGAAAAGACAGAAACAACTT+TGG | 0.496810 | 2_1:-9527447 | None:intergenic |
AAAAGTATGATTTCTAGATA+AGG | 0.496922 | 2_1:+9531430 | Msa0193720:three_prime_UTR |
AATAGATAAGCCCAAGAAAA+GGG | 0.497016 | 2_1:-9530712 | None:intergenic |
AGGGAAAGGGAAAGTAAGGT+TGG | 0.497576 | 2_1:-9527424 | None:intergenic |
GGTAAAGACCAATGAAATGA+TGG | 0.497716 | 2_1:-9527376 | None:intergenic |
AAAGCAAATCTCTCTAGTAT+TGG | 0.497957 | 2_1:-9529406 | None:intergenic |
ACCATGACAGAGAGAATGTA+GGG | 0.498443 | 2_1:+9530286 | Msa0193720:intron |
TGCTCATACAAAGGCTAGAT+GGG | 0.499033 | 2_1:+9530779 | Msa0193720:CDS |
GCACATCTCTTAACAACAAG+TGG | 0.507738 | 2_1:+9529460 | Msa0193720:CDS |
ATGATATTCTTCTCAATGCT+AGG | 0.508459 | 2_1:+9530366 | Msa0193720:CDS |
AGAAATGTACTAACCAAATG+TGG | 0.512832 | 2_1:-9528288 | None:intergenic |
CCATGAAGTTGGTCCATTGG+TGG | 0.513106 | 2_1:-9527600 | None:intergenic |
CATCTAGCCTTTGTATGAGC+AGG | 0.514342 | 2_1:-9530777 | None:intergenic |
TAGGAAAACCCCACTCAAAA+GGG | 0.515152 | 2_1:-9529718 | None:intergenic |
ATCAAAGGCACAAGAAATGA+AGG | 0.517148 | 2_1:-9527913 | None:intergenic |
ACAGTGGAGTCAATTATTCT+GGG | 0.518411 | 2_1:+9527847 | Msa0193720:intron |
GTGATGACTGTGTATCATAT+TGG | 0.522772 | 2_1:+9531485 | Msa0193720:three_prime_UTR |
AAACCCCACTCAAAAGGGTA+TGG | 0.522899 | 2_1:-9529713 | None:intergenic |
ACCGGTGGAGGTTGAAAGGA+AGG | 0.527236 | 2_1:-9531350 | None:intergenic |
TTTCTTGTGCCTTTGATGGG+TGG | 0.532477 | 2_1:+9527919 | Msa0193720:CDS |
AACTTTCGTTGTTAAGATGG+AGG | 0.534653 | 2_1:-9531378 | None:intergenic |
CTTAAAGAAAATATGTTCAG+AGG | 0.537843 | 2_1:+9531407 | Msa0193720:three_prime_UTR |
ACCATGGAGCAGAAGAAATG+AGG | 0.539829 | 2_1:-9529540 | None:intergenic |
TTTCAGAGAATTCACTTCCA+AGG | 0.541420 | 2_1:+9530743 | Msa0193720:CDS |
GTCGTACCACAGGGAACCCT+CGG | 0.543240 | 2_1:-9529086 | None:intergenic |
AAAACCATGAGAGCAGTTCA+AGG | 0.544297 | 2_1:+9528852 | Msa0193720:CDS |
GAAACAACTTTGGAGGGAAA+GGG | 0.544759 | 2_1:-9527437 | None:intergenic |
ATGCCATGAAGTTGGTCCAT+TGG | 0.548504 | 2_1:-9527603 | None:intergenic |
GCATGACCAACATCAAATGT+AGG | 0.550797 | 2_1:-9529737 | None:intergenic |
AAAGACAGAAACAACTTTGG+AGG | 0.552398 | 2_1:-9527444 | None:intergenic |
ACTTTCGTTGTTAAGATGGA+GGG | 0.553811 | 2_1:-9531377 | None:intergenic |
GGAGTGAGTCAATGTTGAAA+AGG | 0.557183 | 2_1:-9527403 | None:intergenic |
CTCAGAACATGAGGAGGCGG+CGG | 0.558241 | 2_1:-9530117 | None:intergenic |
AACTCGGTTACCAACAGTGA+TGG | 0.563295 | 2_1:+9528194 | Msa0193720:CDS |
AACAATGAATGCAACAGTTG+AGG | 0.566026 | 2_1:-9531211 | None:intergenic |
TCATGGTCCTGCTCATACAA+AGG | 0.566133 | 2_1:+9530770 | Msa0193720:CDS |
GCCCAAGAAAAGGGCAACAC+CGG | 0.568156 | 2_1:-9530703 | None:intergenic |
CATGAAGTTGGTCCATTGGT+GGG | 0.571065 | 2_1:-9527599 | None:intergenic |
TGCTACAAACAGAATTAACA+TGG | 0.573720 | 2_1:-9529229 | None:intergenic |
AAGACAGAAACAACTTTGGA+GGG | 0.575540 | 2_1:-9527443 | None:intergenic |
GGGCAACACCGGTAATAAAG+AGG | 0.575808 | 2_1:-9530692 | None:intergenic |
AGTGGATACTAACCCCAAGA+AGG | 0.577397 | 2_1:-9527648 | None:intergenic |
ACTCGGTTACCAACAGTGAT+GGG | 0.579565 | 2_1:+9528195 | Msa0193720:CDS |
AGTACTCTATGCCATGAAGT+TGG | 0.580671 | 2_1:-9527611 | None:intergenic |
TTGTATGAGCAGGACCATGA+AGG | 0.580694 | 2_1:-9530767 | None:intergenic |
CGGCTCAGAACATGAGGAGG+CGG | 0.580815 | 2_1:-9530120 | None:intergenic |
TAAGACCCTCCCATCACTGT+TGG | 0.582978 | 2_1:-9528204 | None:intergenic |
GTGAATTCTCTGAAATACTC+CGG | 0.584231 | 2_1:-9530735 | None:intergenic |
TGGAGCAGAAGAAATGAGGT+TGG | 0.588053 | 2_1:-9529536 | None:intergenic |
CTACTAGGAAGTACTCGTGT+TGG | 0.588073 | 2_1:+9530309 | Msa0193720:CDS |
AAGAATAGCTCCAAAGATAG+GGG | 0.595815 | 2_1:+9531264 | Msa0193720:CDS |
ACACCGCGGCTCAGAACATG+AGG | 0.597392 | 2_1:-9530126 | None:intergenic |
GAGCATACACAGCTGCGTCC+CGG | 0.599026 | 2_1:+9530079 | Msa0193720:CDS |
TGTTGTTAAGAGATGTGCAT+AGG | 0.600614 | 2_1:-9529455 | None:intergenic |
AGTCAATGTTGAAAAGGTGA+AGG | 0.601001 | 2_1:-9527397 | None:intergenic |
AACCATGACAGAGAGAATGT+AGG | 0.602496 | 2_1:+9530285 | Msa0193720:intron |
ACATCAGTTCCACCCATCAA+AGG | 0.612232 | 2_1:-9527928 | None:intergenic |
GTGGATACTAACCCCAAGAA+GGG | 0.612506 | 2_1:-9527647 | None:intergenic |
CCTCCTCATGTTCTGAGCCG+CGG | 0.613487 | 2_1:+9530123 | Msa0193720:CDS |
AATATTATACCACCCACCAA+TGG | 0.613532 | 2_1:+9527587 | Msa0193720:CDS |
TGTATGAGCAGGACCATGAA+GGG | 0.622145 | 2_1:-9530766 | None:intergenic |
GAAATGTACTAACCAAATGT+GGG | 0.622722 | 2_1:-9528287 | None:intergenic |
TCAGGGTGATAAAGTGAGAG+TGG | 0.627396 | 2_1:+9528116 | Msa0193720:intron |
CAAATGTGGGTCTTCTATGG+AGG | 0.629533 | 2_1:-9528274 | None:intergenic |
AAGACCAATGAAATGATGGA+AGG | 0.630403 | 2_1:-9527372 | None:intergenic |
CCGCGGCTCAGAACATGAGG+AGG | 0.643457 | 2_1:-9530123 | None:intergenic |
ATAGATGCAAACCCTTCTTG+GGG | 0.648257 | 2_1:+9527636 | Msa0193720:CDS |
TTTATTAATACTCACCAACA+AGG | 0.649656 | 2_1:-9530551 | None:intergenic |
GTTCTAAACTTGGTCCACCA+TGG | 0.655549 | 2_1:-9531291 | None:intergenic |
CGGTTACCAACAGTGATGGG+AGG | 0.660854 | 2_1:+9528198 | Msa0193720:CDS |
TTACTAACATGAACTCAATG+AGG | 0.664480 | 2_1:+9530667 | Msa0193720:CDS |
GGTTACCAACAGTGATGGGA+GGG | 0.664821 | 2_1:+9528199 | Msa0193720:CDS |
GAAGTTGGTCCATTGGTGGG+TGG | 0.667936 | 2_1:-9527596 | None:intergenic |
GCTACAAACAGAATTAACAT+GGG | 0.677346 | 2_1:-9529228 | None:intergenic |
TGCATAGGCCCATATCATTG+TGG | 0.683156 | 2_1:-9529440 | None:intergenic |
AAGATAGGGGAATGCCATGG+TGG | 0.684562 | 2_1:+9531277 | Msa0193720:CDS |
ATTACTGGAACCATTCCAAG+TGG | 0.687109 | 2_1:-9529036 | None:intergenic |
CCGGTGGAGGTTGAAAGGAA+GGG | 0.694820 | 2_1:-9531349 | None:intergenic |
TTCCCTGCCAGCCAACACCG+CGG | 0.694982 | 2_1:-9530140 | None:intergenic |
CCAAAGATAGGGGAATGCCA+TGG | 0.696229 | 2_1:+9531274 | Msa0193720:CDS |
ATTTAACCGAGGGTTCCCTG+TGG | 0.725174 | 2_1:+9529080 | Msa0193720:CDS |
AATTAAGGAGACCAAAACAG+CGG | 0.734250 | 2_1:-9529774 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTTTTTGATAATCTA+GGG | - | chr2_1:9527974-9527993 | None:intergenic | 10.0% |
!!! | TTTATTTTTTTTGATAATCT+AGG | - | chr2_1:9527975-9527994 | None:intergenic | 10.0% |
!! | AAAAATAAAGAGAAGAAAAA+GGG | - | chr2_1:9527489-9527508 | None:intergenic | 15.0% |
!! | TTGAATATCAAAGAAATTAA+GGG | - | chr2_1:9528010-9528029 | None:intergenic | 15.0% |
!! | ATTGAATATCAAAGAAATTA+AGG | - | chr2_1:9528011-9528030 | None:intergenic | 15.0% |
!!! | AGTTGGTATTTATTAATTAT+TGG | + | chr2_1:9528066-9528085 | Msa0193720:intron | 15.0% |
!! | ATAGATTATAAAAATGTACT+AGG | - | chr2_1:9528324-9528343 | None:intergenic | 15.0% |
!!! | GTTTTCTATTTAAAAATATG+CGG | - | chr2_1:9529604-9529623 | None:intergenic | 15.0% |
!! | GAAAAATAAAGAGAAGAAAA+AGG | - | chr2_1:9527490-9527509 | None:intergenic | 20.0% |
!! | TATAATATTTCTTCTTGCTT+TGG | - | chr2_1:9527576-9527595 | None:intergenic | 20.0% |
!!! | TATTTAGTTTATTATGAGCT+AGG | + | chr2_1:9527778-9527797 | Msa0193720:intron | 20.0% |
!!! | CATGAATAATGGATATAATT+GGG | - | chr2_1:9528242-9528261 | None:intergenic | 20.0% |
!!! | TCATGAATAATGGATATAAT+TGG | - | chr2_1:9528243-9528262 | None:intergenic | 20.0% |
!!! | TTTTCTATTTTACGATGTTT+AGG | + | chr2_1:9528527-9528546 | Msa0193720:intron | 20.0% |
!!! | TTTCTATTTTACGATGTTTA+GGG | + | chr2_1:9528528-9528547 | Msa0193720:intron | 20.0% |
!!! | TTTTCTATTATACAATGCTT+AGG | + | chr2_1:9528720-9528739 | Msa0193720:intron | 20.0% |
!! | AACAAATCTCTGAATATAAA+TGG | - | chr2_1:9528832-9528851 | None:intergenic | 20.0% |
!! | AATAAATTACCTAGAACAAA+TGG | - | chr2_1:9528934-9528953 | None:intergenic | 20.0% |
!! | CAATTATATTGTGTTAATTC+TGG | - | chr2_1:9529502-9529521 | None:intergenic | 20.0% |
!! | AATTAACACAATATAATTGC+AGG | + | chr2_1:9529503-9529522 | Msa0193720:CDS | 20.0% |
!!! | AACTACTTAAGAGATTATTT+TGG | - | chr2_1:9529571-9529590 | None:intergenic | 20.0% |
!! | TGAAATAAGTTAATCCAAAA+AGG | - | chr2_1:9529813-9529832 | None:intergenic | 20.0% |
!!! | TTCATAGTTTTCACTTTAAA+TGG | + | chr2_1:9530241-9530260 | Msa0193720:intron | 20.0% |
!!! | GAAATAAAGATGATTTTGAT+AGG | - | chr2_1:9530417-9530436 | None:intergenic | 20.0% |
!! | TTATGTTTCAATTATTTGAG+AGG | + | chr2_1:9530818-9530837 | Msa0193720:intron | 20.0% |
!!! | TGATATTTTATTGAAACCAA+TGG | + | chr2_1:9530933-9530952 | Msa0193720:intron | 20.0% |
!!! | AAAAGTATGATTTCTAGATA+AGG | + | chr2_1:9531430-9531449 | Msa0193720:three_prime_UTR | 20.0% |
! | TGAAATATTAATGGCTATGA+AGG | - | chr2_1:9527515-9527534 | None:intergenic | 25.0% |
! | TTCATTATATAATGGTGCTT+TGG | + | chr2_1:9527720-9527739 | Msa0193720:intron | 25.0% |
! | TATGATTCAATGAATGATTC+AGG | + | chr2_1:9528098-9528117 | Msa0193720:intron | 25.0% |
! | ATGATTCAATGAATGATTCA+GGG | + | chr2_1:9528099-9528118 | Msa0193720:intron | 25.0% |
! | CTACTTATCTGTTTACTTTA+GGG | - | chr2_1:9528430-9528449 | None:intergenic | 25.0% |
! | TCTACTTATCTGTTTACTTT+AGG | - | chr2_1:9528431-9528450 | None:intergenic | 25.0% |
!! | TCTTTTCATCTCAATTTACT+CGG | + | chr2_1:9528582-9528601 | Msa0193720:intron | 25.0% |
! | TGAAATGTACTACTAAGAAA+GGG | - | chr2_1:9528629-9528648 | None:intergenic | 25.0% |
! | TTGAAATGTACTACTAAGAA+AGG | - | chr2_1:9528630-9528649 | None:intergenic | 25.0% |
!! | CAATTTTAAGCTCATGATTT+TGG | + | chr2_1:9528647-9528666 | Msa0193720:intron | 25.0% |
!! | ATCAAGCATACAGATTATTT+TGG | + | chr2_1:9528890-9528909 | Msa0193720:CDS | 25.0% |
!! | TCAAGCATACAGATTATTTT+GGG | + | chr2_1:9528891-9528910 | Msa0193720:CDS | 25.0% |
! | TGAAAAACCTGGAAATTAAT+AGG | - | chr2_1:9529014-9529033 | None:intergenic | 25.0% |
!!! | TTTTTGTTTCCTTTTTCTTC+AGG | + | chr2_1:9529179-9529198 | Msa0193720:intron | 25.0% |
! | TTTACAACAATATCTCAACA+AGG | - | chr2_1:9529657-9529676 | None:intergenic | 25.0% |
! | AATAATACATGTCTTTCTTC+AGG | + | chr2_1:9530459-9530478 | Msa0193720:intron | 25.0% |
! | TTTATTAATACTCACCAACA+AGG | - | chr2_1:9530554-9530573 | None:intergenic | 25.0% |
! | TCATAACAAAGAGATAGAAA+AGG | - | chr2_1:9530601-9530620 | None:intergenic | 25.0% |
! | GAACTGAAAAACAAATCAAA+AGG | - | chr2_1:9531160-9531179 | None:intergenic | 25.0% |
! | CTTAAAGAAAATATGTTCAG+AGG | + | chr2_1:9531407-9531426 | Msa0193720:three_prime_UTR | 25.0% |
!!! | ATTTTGTTATTGTGAGAGTT+AGG | + | chr2_1:9531458-9531477 | Msa0193720:three_prime_UTR | 25.0% |
TGAAAAGACAGAAACAACTT+TGG | - | chr2_1:9527450-9527469 | None:intergenic | 30.0% | |
TGACACTGCTGAAATATTAA+TGG | - | chr2_1:9527524-9527543 | None:intergenic | 30.0% | |
!! | ACAAAGTGTTGCTTAAATCA+TGG | + | chr2_1:9527545-9527564 | Msa0193720:exon | 30.0% |
!! | ATGTTTTGAACTATGAACAG+TGG | + | chr2_1:9527831-9527850 | Msa0193720:intron | 30.0% |
! | CAATTTGGAGTCATGAATAA+TGG | - | chr2_1:9528253-9528272 | None:intergenic | 30.0% |
CATTATTCATGACTCCAAAT+TGG | + | chr2_1:9528251-9528270 | Msa0193720:CDS | 30.0% | |
GAAATGTACTAACCAAATGT+GGG | - | chr2_1:9528290-9528309 | None:intergenic | 30.0% | |
AGAAATGTACTAACCAAATG+TGG | - | chr2_1:9528291-9528310 | None:intergenic | 30.0% | |
CAATGATTGATTACTGAGTT+CGG | + | chr2_1:9528463-9528482 | Msa0193720:intron | 30.0% | |
!! | TTTTGGGCTTTAGTCAATTA+TGG | + | chr2_1:9528907-9528926 | Msa0193720:CDS | 30.0% |
! | TTTGGGCTTTAGTCAATTAT+GGG | + | chr2_1:9528908-9528927 | Msa0193720:CDS | 30.0% |
AAAACCTGGAAATTAATAGG+AGG | - | chr2_1:9529011-9529030 | None:intergenic | 30.0% | |
AAACCAGATAATGCAATTAC+TGG | - | chr2_1:9529054-9529073 | None:intergenic | 30.0% | |
!! | GTAATTGCATTATCTGGTTT+TGG | + | chr2_1:9529054-9529073 | Msa0193720:CDS | 30.0% |
GCTACAAACAGAATTAACAT+GGG | - | chr2_1:9529231-9529250 | None:intergenic | 30.0% | |
TGCTACAAACAGAATTAACA+TGG | - | chr2_1:9529232-9529251 | None:intergenic | 30.0% | |
TGACATCATAAAAGTGAAGT+TGG | - | chr2_1:9529270-9529289 | None:intergenic | 30.0% | |
AAAGCAAATCTCTCTAGTAT+TGG | - | chr2_1:9529409-9529428 | None:intergenic | 30.0% | |
TTGTATCAACCACAATGATA+TGG | + | chr2_1:9529431-9529450 | Msa0193720:CDS | 30.0% | |
TGTATCAACCACAATGATAT+GGG | + | chr2_1:9529432-9529451 | Msa0193720:CDS | 30.0% | |
!!! | GATTATTTTGGTACTAACCA+TGG | - | chr2_1:9529559-9529578 | None:intergenic | 30.0% |
TCTTAAATATGTTGCCTTAC+AGG | + | chr2_1:9529681-9529700 | Msa0193720:intron | 30.0% | |
! | AGACTGTTTGAAATAGCTTA+TGG | + | chr2_1:9529860-9529879 | Msa0193720:intron | 30.0% |
! | TTTGAAATAGCTTATGGCTA+CGG | + | chr2_1:9529866-9529885 | Msa0193720:intron | 30.0% |
!! | GTTGTTTTCATAAGCTATCA+TGG | - | chr2_1:9529939-9529958 | None:intergenic | 30.0% |
!! | ATCTTGTTGAATGGACTATT+TGG | + | chr2_1:9530168-9530187 | Msa0193720:CDS | 30.0% |
ATGATATTCTTCTCAATGCT+AGG | + | chr2_1:9530366-9530385 | Msa0193720:CDS | 30.0% | |
TGTCTTTCTTCAGGAAAATT+TGG | + | chr2_1:9530468-9530487 | Msa0193720:intron | 30.0% | |
AGTACATAGCAGCAAAAATA+GGG | - | chr2_1:9530518-9530537 | None:intergenic | 30.0% | |
TTACTAACATGAACTCAATG+AGG | + | chr2_1:9530667-9530686 | Msa0193720:CDS | 30.0% | |
AATAGATAAGCCCAAGAAAA+GGG | - | chr2_1:9530715-9530734 | None:intergenic | 30.0% | |
!! | TGCATGTACTGATTTATGTA+TGG | + | chr2_1:9530977-9530996 | Msa0193720:intron | 30.0% |
ATAGTTGTGAATTCTTCATC+TGG | + | chr2_1:9531001-9531020 | Msa0193720:intron | 30.0% | |
! | ACCAAGTTTAGAACATTTCA+TGG | + | chr2_1:9531300-9531319 | Msa0193720:CDS | 30.0% |
! | TCCATGAAATGTTCTAAACT+TGG | - | chr2_1:9531304-9531323 | None:intergenic | 30.0% |
CATAACTTTCGTTGTTAAGA+TGG | - | chr2_1:9531384-9531403 | None:intergenic | 30.0% | |
!! | GTTTAACATTGACTTCTTCA+TGG | + | chr2_1:9531536-9531555 | Msa0193720:three_prime_UTR | 30.0% |
TCAAATATGCCAATTCAAAC+AGG | - | chr2_1:9531583-9531602 | None:intergenic | 30.0% | |
! | AATAAGCCGAAAATAGCTTT+TGG | - | chr2_1:9531674-9531693 | None:intergenic | 30.0% |
AAGAGAGAGACAATGAGAAA+TGG | - | chr2_1:9527352-9527371 | None:intergenic | 35.0% | |
TCTTCCTTCCATCATTTCAT+TGG | + | chr2_1:9527368-9527387 | Msa0193720:five_prime_UTR | 35.0% | |
! | AAGACCAATGAAATGATGGA+AGG | - | chr2_1:9527375-9527394 | None:intergenic | 35.0% |
GGTAAAGACCAATGAAATGA+TGG | - | chr2_1:9527379-9527398 | None:intergenic | 35.0% | |
AGTCAATGTTGAAAAGGTGA+AGG | - | chr2_1:9527400-9527419 | None:intergenic | 35.0% | |
AAGACAGAAACAACTTTGGA+GGG | - | chr2_1:9527446-9527465 | None:intergenic | 35.0% | |
AAAGACAGAAACAACTTTGG+AGG | - | chr2_1:9527447-9527466 | None:intergenic | 35.0% | |
AAGAAAAAGGGTTGAGAGAA+AGG | - | chr2_1:9527477-9527496 | None:intergenic | 35.0% | |
AATATTATACCACCCACCAA+TGG | + | chr2_1:9527587-9527606 | Msa0193720:CDS | 35.0% | |
TAAGAATGAAAATGCAGAGG+AGG | - | chr2_1:9527676-9527695 | None:intergenic | 35.0% | |
GCTTAAGAATGAAAATGCAG+AGG | - | chr2_1:9527679-9527698 | None:intergenic | 35.0% | |
! | TGCTTTGGTTCATGCTATAT+AGG | + | chr2_1:9527735-9527754 | Msa0193720:intron | 35.0% |
! | ATTATGAGCTAGGACCATTT+TGG | + | chr2_1:9527788-9527807 | Msa0193720:intron | 35.0% |
AACAGTGGAGTCAATTATTC+TGG | + | chr2_1:9527846-9527865 | Msa0193720:intron | 35.0% | |
ACAGTGGAGTCAATTATTCT+GGG | + | chr2_1:9527847-9527866 | Msa0193720:intron | 35.0% | |
! | GGGTTTTCAGCATTACATTT+TGG | + | chr2_1:9527867-9527886 | Msa0193720:CDS | 35.0% |
!!! | CAGCATTACATTTTGGCTTT+AGG | + | chr2_1:9527874-9527893 | Msa0193720:CDS | 35.0% |
! | ATCAAAGGCACAAGAAATGA+AGG | - | chr2_1:9527916-9527935 | None:intergenic | 35.0% |
TTCATTTCTTGTGCCTTTGA+TGG | + | chr2_1:9527915-9527934 | Msa0193720:CDS | 35.0% | |
TCATTTCTTGTGCCTTTGAT+GGG | + | chr2_1:9527916-9527935 | Msa0193720:CDS | 35.0% | |
!!! | CAGATTCTGCTTTTTGTAGA+AGG | + | chr2_1:9528141-9528160 | Msa0193720:CDS | 35.0% |
!! | TATCTGTTTACTTTAGGGCA+GGG | - | chr2_1:9528425-9528444 | None:intergenic | 35.0% |
!! | TTATCTGTTTACTTTAGGGC+AGG | - | chr2_1:9528426-9528445 | None:intergenic | 35.0% |
GTTAAAGACCAAGACACAAT+TGG | - | chr2_1:9528489-9528508 | None:intergenic | 35.0% | |
! | GTTTAGGGTTATAACGTACA+AGG | + | chr2_1:9528543-9528562 | Msa0193720:intron | 35.0% |
ATTAGTGTTAGAACCGAGTT+TGG | + | chr2_1:9528686-9528705 | Msa0193720:intron | 35.0% | |
AAGCTACAATTAGCCAAACT+CGG | - | chr2_1:9528702-9528721 | None:intergenic | 35.0% | |
AATTATGGGCCATTTGTTCT+AGG | + | chr2_1:9528922-9528941 | Msa0193720:CDS | 35.0% | |
GTTTCCTCCTATTAATTTCC+AGG | + | chr2_1:9529004-9529023 | Msa0193720:intron | 35.0% | |
GTTCCAGTAATTGCATTATC+TGG | + | chr2_1:9529048-9529067 | Msa0193720:CDS | 35.0% | |
!!! | GTTTTGGCTTATTTAACCGA+GGG | + | chr2_1:9529070-9529089 | Msa0193720:CDS | 35.0% |
! | TGTTTCCTTTTTCTTCAGGT+TGG | + | chr2_1:9529183-9529202 | Msa0193720:intron | 35.0% |
AATGTCCAACCTGAAGAAAA+AGG | - | chr2_1:9529191-9529210 | None:intergenic | 35.0% | |
GTTGGACATTGTGTTGAAAT+TGG | + | chr2_1:9529201-9529220 | Msa0193720:CDS | 35.0% | |
TGTTGTTAAGAGATGTGCAT+AGG | - | chr2_1:9529458-9529477 | None:intergenic | 35.0% | |
TATGGAATCTTCATCCTGTA+AGG | - | chr2_1:9529698-9529717 | None:intergenic | 35.0% | |
! | GGTTTTCCTACATTTGATGT+TGG | + | chr2_1:9529731-9529750 | Msa0193720:CDS | 35.0% |
! | TTTGATGTTGGTCATGCTTT+TGG | + | chr2_1:9529743-9529762 | Msa0193720:CDS | 35.0% |
AATTAAGGAGACCAAAACAG+CGG | - | chr2_1:9529777-9529796 | None:intergenic | 35.0% | |
!!! | TGTTTTGGTCTCCTTAATTG+AGG | + | chr2_1:9529778-9529797 | Msa0193720:CDS | 35.0% |
! | GCTATTTCAAACAGTCTAAC+AGG | - | chr2_1:9529857-9529876 | None:intergenic | 35.0% |
TTGTTTATCTGACAGTCAAC+TGG | + | chr2_1:9530057-9530076 | Msa0193720:intron | 35.0% | |
GGAATTGGAATCTTGTTGAA+TGG | + | chr2_1:9530159-9530178 | Msa0193720:CDS | 35.0% | |
AGAGTCATTCAAATTTCAGC+AGG | + | chr2_1:9530339-9530358 | Msa0193720:CDS | 35.0% | |
ATAGCAGCAAAAATAGGGAA+GGG | - | chr2_1:9530513-9530532 | None:intergenic | 35.0% | |
CAGTACATAGCAGCAAAAAT+AGG | - | chr2_1:9530519-9530538 | None:intergenic | 35.0% | |
! | AATTGTGTTTTCAGCTTCTG+TGG | + | chr2_1:9530626-9530645 | Msa0193720:intron | 35.0% |
! | ATTGTGTTTTCAGCTTCTGT+GGG | + | chr2_1:9530627-9530646 | Msa0193720:intron | 35.0% |
GAATAGATAAGCCCAAGAAA+AGG | - | chr2_1:9530716-9530735 | None:intergenic | 35.0% | |
TTTCTTGGGCTTATCTATTC+CGG | + | chr2_1:9530716-9530735 | Msa0193720:CDS | 35.0% | |
!! | GTGAATTCTCTGAAATACTC+CGG | - | chr2_1:9530738-9530757 | None:intergenic | 35.0% |
TTTCAGAGAATTCACTTCCA+AGG | + | chr2_1:9530743-9530762 | Msa0193720:CDS | 35.0% | |
!! | TCATCGGTTTCTATTTGTGA+TGG | + | chr2_1:9531069-9531088 | Msa0193720:intron | 35.0% |
AACAATGAATGCAACAGTTG+AGG | - | chr2_1:9531214-9531233 | None:intergenic | 35.0% | |
ATTCATTGTTGCTGTGTTCT+TGG | + | chr2_1:9531224-9531243 | Msa0193720:CDS | 35.0% | |
ACAAGAATAGCTCCAAAGAT+AGG | + | chr2_1:9531262-9531281 | Msa0193720:CDS | 35.0% | |
CAAGAATAGCTCCAAAGATA+GGG | + | chr2_1:9531263-9531282 | Msa0193720:CDS | 35.0% | |
AAGAATAGCTCCAAAGATAG+GGG | + | chr2_1:9531264-9531283 | Msa0193720:CDS | 35.0% | |
ACTTTCGTTGTTAAGATGGA+GGG | - | chr2_1:9531380-9531399 | None:intergenic | 35.0% | |
AACTTTCGTTGTTAAGATGG+AGG | - | chr2_1:9531381-9531400 | None:intergenic | 35.0% | |
GTGATGACTGTGTATCATAT+TGG | + | chr2_1:9531485-9531504 | Msa0193720:three_prime_UTR | 35.0% | |
! | TTCTTCATGGCCTTTCTTTT+TGG | + | chr2_1:9531549-9531568 | Msa0193720:three_prime_UTR | 35.0% |
!! | GCATGTCCAAAAGCTATTTT+CGG | + | chr2_1:9531665-9531684 | Msa0193720:three_prime_UTR | 35.0% |
GGAGTGAGTCAATGTTGAAA+AGG | - | chr2_1:9527406-9527425 | None:intergenic | 40.0% | |
! | GAAACAACTTTGGAGGGAAA+GGG | - | chr2_1:9527440-9527459 | None:intergenic | 40.0% |
! | AGAAACAACTTTGGAGGGAA+AGG | - | chr2_1:9527441-9527460 | None:intergenic | 40.0% |
AAAAAGGGTTGAGAGAAAGG+TGG | - | chr2_1:9527474-9527493 | None:intergenic | 40.0% | |
AGTACTCTATGCCATGAAGT+TGG | - | chr2_1:9527614-9527633 | None:intergenic | 40.0% | |
CATAGATGCAAACCCTTCTT+GGG | + | chr2_1:9527635-9527654 | Msa0193720:CDS | 40.0% | |
ATAGATGCAAACCCTTCTTG+GGG | + | chr2_1:9527636-9527655 | Msa0193720:CDS | 40.0% | |
CACTCTCAGTGAAACCAAAA+TGG | - | chr2_1:9527805-9527824 | None:intergenic | 40.0% | |
TCCTAGATAGAGAAGAGAGT+TGG | + | chr2_1:9528049-9528068 | Msa0193720:intron | 40.0% | |
ACCAACTCTCTTCTCTATCT+AGG | - | chr2_1:9528053-9528072 | None:intergenic | 40.0% | |
ACACTCTTTCAGACACTCTT+TGG | + | chr2_1:9528171-9528190 | Msa0193720:CDS | 40.0% | |
!! | TTCAGACACTCTTTGGAACT+CGG | + | chr2_1:9528178-9528197 | Msa0193720:CDS | 40.0% |
AACCAAATGTGGGTCTTCTA+TGG | - | chr2_1:9528280-9528299 | None:intergenic | 40.0% | |
AAAACCATGAGAGCAGTTCA+AGG | + | chr2_1:9528852-9528871 | Msa0193720:CDS | 40.0% | |
!! | GTTTTTCAGTCCACTTGGAA+TGG | + | chr2_1:9529026-9529045 | Msa0193720:CDS | 40.0% |
ATTACTGGAACCATTCCAAG+TGG | - | chr2_1:9529039-9529058 | None:intergenic | 40.0% | |
!!! | GGTTTTGGCTTATTTAACCG+AGG | + | chr2_1:9529069-9529088 | Msa0193720:CDS | 40.0% |
TGAACTATTGTCGTACCACA+GGG | - | chr2_1:9529098-9529117 | None:intergenic | 40.0% | |
TCTTAAGTTCACCTCTTCCT+AGG | + | chr2_1:9529136-9529155 | Msa0193720:intron | 40.0% | |
TAAAATACGAGCCTAGGAAG+AGG | - | chr2_1:9529150-9529169 | None:intergenic | 40.0% | |
AGAAGCTAAAATACGAGCCT+AGG | - | chr2_1:9529156-9529175 | None:intergenic | 40.0% | |
TCTGTTTGTAGCATTCTCTC+AGG | + | chr2_1:9529239-9529258 | Msa0193720:CDS | 40.0% | |
GCACATCTCTTAACAACAAG+TGG | + | chr2_1:9529460-9529479 | Msa0193720:CDS | 40.0% | |
TCAACAAGGTACAAACTCAC+TGG | - | chr2_1:9529643-9529662 | None:intergenic | 40.0% | |
! | AGATTCCATACCCTTTTGAG+TGG | + | chr2_1:9529708-9529727 | Msa0193720:CDS | 40.0% |
!! | GATTCCATACCCTTTTGAGT+GGG | + | chr2_1:9529709-9529728 | Msa0193720:CDS | 40.0% |
!! | ATTCCATACCCTTTTGAGTG+GGG | + | chr2_1:9529710-9529729 | Msa0193720:CDS | 40.0% |
TAGGAAAACCCCACTCAAAA+GGG | - | chr2_1:9529721-9529740 | None:intergenic | 40.0% | |
GCATGACCAACATCAAATGT+AGG | - | chr2_1:9529740-9529759 | None:intergenic | 40.0% | |
GGCTCATAGTACCTCAATTA+AGG | - | chr2_1:9529792-9529811 | None:intergenic | 40.0% | |
!! | TGAGGTACTATGAGCCTTTT+TGG | + | chr2_1:9529796-9529815 | Msa0193720:intron | 40.0% |
AACCATGACAGAGAGAATGT+AGG | + | chr2_1:9530285-9530304 | Msa0193720:intron | 40.0% | |
ACCATGACAGAGAGAATGTA+GGG | + | chr2_1:9530286-9530305 | Msa0193720:intron | 40.0% | |
CATAGCAGCAAAAATAGGGA+AGG | - | chr2_1:9530514-9530533 | None:intergenic | 40.0% | |
AAAGGCTCAAACACAGTCAA+AGG | - | chr2_1:9530583-9530602 | None:intergenic | 40.0% | |
! | TTGTGTTTTCAGCTTCTGTG+GGG | + | chr2_1:9530628-9530647 | Msa0193720:intron | 40.0% |
ATGAGGAGCCTCTTTATTAC+CGG | + | chr2_1:9530684-9530703 | Msa0193720:CDS | 40.0% | |
TGCTCATACAAAGGCTAGAT+GGG | + | chr2_1:9530779-9530798 | Msa0193720:CDS | 40.0% | |
AGATAGTGAGTAGTAGCCAT+TGG | - | chr2_1:9530952-9530971 | None:intergenic | 40.0% | |
ACAGAACAGTTACGCATCAT+CGG | + | chr2_1:9531053-9531072 | Msa0193720:intron | 40.0% | |
GGTGTAGAACTCTTCATTTC+TGG | - | chr2_1:9531331-9531350 | None:intergenic | 40.0% | |
GTTAAGATGGAGGGAAAAAC+CGG | - | chr2_1:9531371-9531390 | None:intergenic | 40.0% | |
GGCTTGTAGTCCAAAAAGAA+AGG | - | chr2_1:9531562-9531581 | None:intergenic | 40.0% | |
GACTACAAGCCTGTTTGAAT+TGG | + | chr2_1:9531571-9531590 | Msa0193720:three_prime_UTR | 40.0% | |
AGGGAAAGGGAAAGTAAGGT+TGG | - | chr2_1:9527427-9527446 | None:intergenic | 45.0% | |
TTGGAGGGAAAGGGAAAGTA+AGG | - | chr2_1:9527431-9527450 | None:intergenic | 45.0% | |
! | CATGAAGTTGGTCCATTGGT+GGG | - | chr2_1:9527602-9527621 | None:intergenic | 45.0% |
! | ATGCCATGAAGTTGGTCCAT+TGG | - | chr2_1:9527606-9527625 | None:intergenic | 45.0% |
GCATAGATGCAAACCCTTCT+TGG | + | chr2_1:9527634-9527653 | Msa0193720:CDS | 45.0% | |
GTGGATACTAACCCCAAGAA+GGG | - | chr2_1:9527650-9527669 | None:intergenic | 45.0% | |
AGTGGATACTAACCCCAAGA+AGG | - | chr2_1:9527651-9527670 | None:intergenic | 45.0% | |
GAAAATGCAGAGGAGGAAAG+TGG | - | chr2_1:9527669-9527688 | None:intergenic | 45.0% | |
TTTCTTGTGCCTTTGATGGG+TGG | + | chr2_1:9527919-9527938 | Msa0193720:CDS | 45.0% | |
ACATCAGTTCCACCCATCAA+AGG | - | chr2_1:9527931-9527950 | None:intergenic | 45.0% | |
TCAGGGTGATAAAGTGAGAG+TGG | + | chr2_1:9528116-9528135 | Msa0193720:intron | 45.0% | |
AACTCGGTTACCAACAGTGA+TGG | + | chr2_1:9528194-9528213 | Msa0193720:CDS | 45.0% | |
ACTCGGTTACCAACAGTGAT+GGG | + | chr2_1:9528195-9528214 | Msa0193720:CDS | 45.0% | |
! | GGGAGGGTCTTATGCATTTA+TGG | + | chr2_1:9528215-9528234 | Msa0193720:CDS | 45.0% |
GTCTTCTATGGAGGCCAATT+TGG | - | chr2_1:9528268-9528287 | None:intergenic | 45.0% | |
CAAATGTGGGTCTTCTATGG+AGG | - | chr2_1:9528277-9528296 | None:intergenic | 45.0% | |
CTCCATAGAAGACCCACATT+TGG | + | chr2_1:9528275-9528294 | Msa0193720:CDS | 45.0% | |
!! | GTTTACTTTAGGGCAGGGTT+TGG | - | chr2_1:9528420-9528439 | None:intergenic | 45.0% |
!! | TCCAGGTTTTTCAGTCCACT+TGG | + | chr2_1:9529021-9529040 | Msa0193720:intron | 45.0% |
!! | TCCAAGTGGACTGAAAAACC+TGG | - | chr2_1:9529025-9529044 | None:intergenic | 45.0% |
GTGAACTATTGTCGTACCAC+AGG | - | chr2_1:9529099-9529118 | None:intergenic | 45.0% | |
TGCATAGGCCCATATCATTG+TGG | - | chr2_1:9529443-9529462 | None:intergenic | 45.0% | |
TGGAGCAGAAGAAATGAGGT+TGG | - | chr2_1:9529539-9529558 | None:intergenic | 45.0% | |
ACCTCATTTCTTCTGCTCCA+TGG | + | chr2_1:9529539-9529558 | Msa0193720:CDS | 45.0% | |
ACCATGGAGCAGAAGAAATG+AGG | - | chr2_1:9529543-9529562 | None:intergenic | 45.0% | |
AAACCCCACTCAAAAGGGTA+TGG | - | chr2_1:9529716-9529735 | None:intergenic | 45.0% | |
GTAGGAAAACCCCACTCAAA+AGG | - | chr2_1:9529722-9529741 | None:intergenic | 45.0% | |
! | TGGTCATGCTTTTGGCATGA+TGG | + | chr2_1:9529751-9529770 | Msa0193720:CDS | 45.0% |
! | GGACTATTTGGAACACTGAC+TGG | + | chr2_1:9530180-9530199 | Msa0193720:CDS | 45.0% |
AGAGAGAATGTAGGGCTACT+AGG | + | chr2_1:9530294-9530313 | Msa0193720:intron | 45.0% | |
!! | CTACTAGGAAGTACTCGTGT+TGG | + | chr2_1:9530309-9530328 | Msa0193720:CDS | 45.0% |
GCTATGTACTGTGTCCTGTT+TGG | + | chr2_1:9530528-9530547 | Msa0193720:CDS | 45.0% | |
TGTATGAGCAGGACCATGAA+GGG | - | chr2_1:9530769-9530788 | None:intergenic | 45.0% | |
TTGTATGAGCAGGACCATGA+AGG | - | chr2_1:9530770-9530789 | None:intergenic | 45.0% | |
TCATGGTCCTGCTCATACAA+AGG | + | chr2_1:9530770-9530789 | Msa0193720:CDS | 45.0% | |
! | CATCTAGCCTTTGTATGAGC+AGG | - | chr2_1:9530780-9530799 | None:intergenic | 45.0% |
CTGCTCATACAAAGGCTAGA+TGG | + | chr2_1:9530778-9530797 | Msa0193720:CDS | 45.0% | |
CATATGCATGCACATGTCTC+AGG | + | chr2_1:9530853-9530872 | Msa0193720:intron | 45.0% | |
! | GTTCTAAACTTGGTCCACCA+TGG | - | chr2_1:9531294-9531313 | None:intergenic | 45.0% |
AAAAACCGGTGGAGGTTGAA+AGG | - | chr2_1:9531357-9531376 | None:intergenic | 45.0% | |
!!! | TTATTTTTTTCATTATATAA+TGG | + | chr2_1:9527712-9527731 | Msa0193720:intron | 5.0% |
! | CCATGAAGTTGGTCCATTGG+TGG | - | chr2_1:9527603-9527622 | None:intergenic | 50.0% |
CCACCAATGGACCAACTTCA+TGG | + | chr2_1:9527600-9527619 | Msa0193720:CDS | 50.0% | |
! | GGTTACCAACAGTGATGGGA+GGG | + | chr2_1:9528199-9528218 | Msa0193720:CDS | 50.0% |
TAAGACCCTCCCATCACTGT+TGG | - | chr2_1:9528207-9528226 | None:intergenic | 50.0% | |
GAGTTCGGCCAATTGTGTCT+TGG | + | chr2_1:9528478-9528497 | Msa0193720:intron | 50.0% | |
TGCACCTTGAACTGCTCTCA+TGG | - | chr2_1:9528859-9528878 | None:intergenic | 50.0% | |
ATTTAACCGAGGGTTCCCTG+TGG | + | chr2_1:9529080-9529099 | Msa0193720:CDS | 50.0% | |
GCCCTACATTCTCTCTGTCA+TGG | - | chr2_1:9530290-9530309 | None:intergenic | 50.0% | |
!! | TGTGTCCTGTTTGGCCTTGT+TGG | + | chr2_1:9530537-9530556 | Msa0193720:CDS | 50.0% |
ACTCACCAACAAGGCCAAAC+AGG | - | chr2_1:9530545-9530564 | None:intergenic | 50.0% | |
GGCTCAAACACAGTCAAAGG+TGG | - | chr2_1:9530580-9530599 | None:intergenic | 50.0% | |
GGGCAACACCGGTAATAAAG+AGG | - | chr2_1:9530695-9530714 | None:intergenic | 50.0% | |
!!! | TACCGGTGTTGCCCTTTTCT+TGG | + | chr2_1:9530701-9530720 | Msa0193720:CDS | 50.0% |
!!! | ACCGGTGTTGCCCTTTTCTT+GGG | + | chr2_1:9530702-9530721 | Msa0193720:CDS | 50.0% |
TTCACTTCCAAGGCCCTTCA+TGG | + | chr2_1:9530753-9530772 | Msa0193720:CDS | 50.0% | |
ATGCATGCACATGTCTCAGG+TGG | + | chr2_1:9530856-9530875 | Msa0193720:intron | 50.0% | |
CCATGGCATTCCCCTATCTT+TGG | - | chr2_1:9531277-9531296 | None:intergenic | 50.0% | |
CCAAAGATAGGGGAATGCCA+TGG | + | chr2_1:9531274-9531293 | Msa0193720:CDS | 50.0% | |
AAGATAGGGGAATGCCATGG+TGG | + | chr2_1:9531277-9531296 | Msa0193720:CDS | 50.0% | |
AAGATGGAGGGAAAAACCGG+TGG | - | chr2_1:9531368-9531387 | None:intergenic | 50.0% | |
! | GAAGTTGGTCCATTGGTGGG+TGG | - | chr2_1:9527599-9527618 | None:intergenic | 55.0% |
! | CGGTTACCAACAGTGATGGG+AGG | + | chr2_1:9528198-9528217 | Msa0193720:CDS | 55.0% |
! | TGGCATGATGGCCGCTGTTT+TGG | + | chr2_1:9529763-9529782 | Msa0193720:CDS | 55.0% |
GCCCAAGAAAAGGGCAACAC+CGG | - | chr2_1:9530706-9530725 | None:intergenic | 55.0% | |
CCGGTGGAGGTTGAAAGGAA+GGG | - | chr2_1:9531352-9531371 | None:intergenic | 55.0% | |
CCCTTCCTTTCAACCTCCAC+CGG | + | chr2_1:9531349-9531368 | Msa0193720:CDS | 55.0% | |
ACCGGTGGAGGTTGAAAGGA+AGG | - | chr2_1:9531353-9531372 | None:intergenic | 55.0% | |
ATGGAGGGAAAAACCGGTGG+AGG | - | chr2_1:9531365-9531384 | None:intergenic | 55.0% | |
GTCGTACCACAGGGAACCCT+CGG | - | chr2_1:9529089-9529108 | None:intergenic | 60.0% | |
GAGCATACACAGCTGCGTCC+CGG | + | chr2_1:9530079-9530098 | Msa0193720:CDS | 60.0% | |
!! | CGGTGTTGCACTTGCTAGCC+GGG | - | chr2_1:9530100-9530119 | None:intergenic | 60.0% |
!! | GCGGTGTTGCACTTGCTAGC+CGG | - | chr2_1:9530101-9530120 | None:intergenic | 60.0% |
CTCAGAACATGAGGAGGCGG+CGG | - | chr2_1:9530120-9530139 | None:intergenic | 60.0% | |
CGGCTCAGAACATGAGGAGG+CGG | - | chr2_1:9530123-9530142 | None:intergenic | 60.0% | |
! | CCTCCTCATGTTCTGAGCCG+CGG | + | chr2_1:9530123-9530142 | Msa0193720:CDS | 60.0% |
ACACCGCGGCTCAGAACATG+AGG | - | chr2_1:9530129-9530148 | None:intergenic | 60.0% | |
! | CATGTTCTGAGCCGCGGTGT+TGG | + | chr2_1:9530129-9530148 | Msa0193720:CDS | 60.0% |
!! | GGTGTTGGCTGGCAGGGAAT+TGG | + | chr2_1:9530144-9530163 | Msa0193720:CDS | 60.0% |
AGCAGGACCATGAAGGGCCT+TGG | - | chr2_1:9530763-9530782 | None:intergenic | 60.0% | |
CCGCGGCTCAGAACATGAGG+AGG | - | chr2_1:9530126-9530145 | None:intergenic | 65.0% | |
!! | TTCTGAGCCGCGGTGTTGGC+TGG | + | chr2_1:9530133-9530152 | Msa0193720:CDS | 65.0% |
TTCCCTGCCAGCCAACACCG+CGG | - | chr2_1:9530143-9530162 | None:intergenic | 65.0% | |
!! | AGCCGCGGTGTTGGCTGGCA+GGG | + | chr2_1:9530138-9530157 | Msa0193720:CDS | 70.0% |
!! | GAGCCGCGGTGTTGGCTGGC+AGG | + | chr2_1:9530137-9530156 | Msa0193720:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 9527343 | 9531710 | 9527343 | ID=Msa0193720;Name=Msa0193720 |
chr2_1 | mRNA | 9527343 | 9531710 | 9527343 | ID=Msa0193720-mRNA-1;Parent=Msa0193720;Name=Msa0193720-mRNA-1;_AED=0.14;_eAED=0.14;_QI=221|1|1|1|1|1|13|321|525 |
chr2_1 | exon | 9527343 | 9527657 | 9527343 | ID=Msa0193720-mRNA-1:exon:4373;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9527851 | 9527948 | 9527851 | ID=Msa0193720-mRNA-1:exon:4374;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9528120 | 9528296 | 9528120 | ID=Msa0193720-mRNA-1:exon:4375;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9528843 | 9528943 | 9528843 | ID=Msa0193720-mRNA-1:exon:4376;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9529026 | 9529101 | 9529026 | ID=Msa0193720-mRNA-1:exon:4377;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9529201 | 9529260 | 9529201 | ID=Msa0193720-mRNA-1:exon:4378;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9529376 | 9529560 | 9529376 | ID=Msa0193720-mRNA-1:exon:4379;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9529703 | 9529799 | 9529703 | ID=Msa0193720-mRNA-1:exon:4380;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9530072 | 9530217 | 9530072 | ID=Msa0193720-mRNA-1:exon:4381;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9530296 | 9530387 | 9530296 | ID=Msa0193720-mRNA-1:exon:4382;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9530481 | 9530558 | 9530481 | ID=Msa0193720-mRNA-1:exon:4383;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9530640 | 9530800 | 9530640 | ID=Msa0193720-mRNA-1:exon:4384;Parent=Msa0193720-mRNA-1 |
chr2_1 | exon | 9531177 | 9531710 | 9531177 | ID=Msa0193720-mRNA-1:exon:4385;Parent=Msa0193720-mRNA-1 |
chr2_1 | five_prime_UTR | 9527343 | 9527563 | 9527343 | ID=Msa0193720-mRNA-1:five_prime_utr;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9527564 | 9527657 | 9527564 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9527851 | 9527948 | 9527851 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9528120 | 9528296 | 9528120 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9528843 | 9528943 | 9528843 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9529026 | 9529101 | 9529026 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9529201 | 9529260 | 9529201 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9529376 | 9529560 | 9529376 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9529703 | 9529799 | 9529703 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9530072 | 9530217 | 9530072 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9530296 | 9530387 | 9530296 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9530481 | 9530558 | 9530481 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9530640 | 9530800 | 9530640 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | CDS | 9531177 | 9531389 | 9531177 | ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1 |
chr2_1 | three_prime_UTR | 9531390 | 9531710 | 9531390 | ID=Msa0193720-mRNA-1:three_prime_utr;Parent=Msa0193720-mRNA-1 |
Gene Sequence |
Protein sequence |