AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0193720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193720 MtrunA17_Chr2g0284061 98.286 525 8 1 1 525 1 524 0.0 1050
Msa0193720 MtrunA17_Chr8g0379171 83.619 525 85 1 1 525 1 524 0.0 914
Msa0193720 MtrunA17_Chr3g0119521 69.515 515 156 1 12 525 6 520 0.0 760
Msa0193720 MtrunA17_Chr8g0364611 59.770 522 208 1 4 523 10 531 0.0 650
Msa0193720 MtrunA17_Chr3g0117941 58.157 521 216 1 5 523 10 530 0.0 625
Msa0193720 MtrunA17_Chr4g0059331 57.935 523 218 1 3 523 8 530 0.0 620
Msa0193720 MtrunA17_Chr5g0414131 56.214 523 226 2 4 523 14 536 0.0 595
Msa0193720 MtrunA17_Chr1g0154001 54.706 510 231 0 14 523 36 545 0.0 581
Msa0193720 MtrunA17_Chr1g0207021 54.286 525 233 4 2 523 5 525 0.0 567
Msa0193720 MtrunA17_Chr3g0134911 48.029 558 243 5 5 523 34 583 0.0 543
Msa0193720 MtrunA17_Chr5g0405471 50.943 530 238 5 12 523 35 560 0.0 535
Msa0193720 MtrunA17_Chr8g0367361 34.720 553 321 6 2 522 224 768 3.60e-109 342
Msa0193720 MtrunA17_Chr5g0412181 35.741 526 302 5 25 518 172 693 1.38e-104 328
Msa0193720 MtrunA17_Chr2g0320981 35.261 536 309 5 21 522 147 678 4.63e-103 324
Msa0193720 MtrunA17_Chr4g0027121 35.075 536 311 6 21 522 154 686 2.62e-99 314
Msa0193720 MtrunA17_Chr2g0332871 33.004 506 287 8 41 522 166 643 6.24e-91 291
Msa0193720 MtrunA17_Chr8g0379181 83.333 54 9 0 402 455 9 62 2.02e-23 93.6
Msa0193720 MtrunA17_Chr5g0418111 66.071 56 19 0 456 511 39 94 1.49e-19 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193720 AT2G34190.1 81.524 525 96 1 1 525 1 524 0.0 897
Msa0193720 AT2G05760.1 66.408 515 172 1 12 525 6 520 0.0 736
Msa0193720 AT5G62890.1 57.744 523 219 1 3 523 8 530 0.0 620
Msa0193720 AT5G62890.2 57.744 523 219 1 3 523 8 530 0.0 620
Msa0193720 AT5G62890.3 57.744 523 219 1 3 523 8 530 0.0 620
Msa0193720 AT1G60030.1 56.430 521 225 1 5 523 16 536 0.0 615
Msa0193720 AT2G26510.1 55.664 512 226 1 13 523 36 547 0.0 584
Msa0193720 AT1G10540.1 53.244 524 240 3 5 523 14 537 0.0 582
Msa0193720 AT5G49990.2 55.513 526 231 2 1 523 1 526 0.0 578
Msa0193720 AT5G49990.3 55.513 526 231 2 1 523 1 526 0.0 578
Msa0193720 AT5G49990.1 55.513 526 231 2 1 523 1 526 0.0 578
Msa0193720 AT5G49990.4 55.513 526 231 2 1 523 1 526 0.0 578
Msa0193720 AT1G49960.1 54.685 523 235 1 3 523 2 524 0.0 570
Msa0193720 AT1G65550.1 49.432 528 256 3 5 523 14 539 0.0 555
Msa0193720 AT5G62890.4 56.954 453 195 0 3 455 8 460 0.0 532
Msa0193720 AT1G10540.2 53.867 375 170 2 5 376 14 388 1.44e-142 416
Msa0193720 AT2G26510.3 55.769 364 161 0 13 376 36 399 2.94e-139 408
Msa0193720 AT2G26510.2 55.556 351 156 0 13 363 36 386 1.80e-133 394
Msa0193720 AT5G25420.1 43.119 436 180 5 5 440 26 393 1.39e-124 371
Msa0193720 AT4G38050.1 35.206 534 310 5 21 522 175 704 2.04e-97 310
Msa0193720 AT2G27810.1 34.630 540 315 6 17 522 166 701 3.05e-97 310
Msa0193720 AT2G27810.4 33.156 564 315 7 17 522 166 725 7.69e-92 296
Msa0193720 AT2G27810.2 35.681 426 254 4 17 424 166 589 1.36e-77 255
Msa0193720 AT2G27810.3 35.884 379 223 4 17 377 166 542 1.23e-65 222

Find 162 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGCATACAGATTATTT+TGG 0.131330 2_1:+9528890 Msa0193720:CDS
TGTCTTTCTTCAGGAAAATT+TGG 0.180383 2_1:+9530468 Msa0193720:intron
GGTGTAGAACTCTTCATTTC+TGG 0.205089 2_1:-9531328 None:intergenic
GGGAGGGTCTTATGCATTTA+TGG 0.208667 2_1:+9528215 Msa0193720:CDS
ATCTTGTTGAATGGACTATT+TGG 0.208821 2_1:+9530168 Msa0193720:CDS
GTAATTGCATTATCTGGTTT+TGG 0.212700 2_1:+9529054 Msa0193720:CDS
AACAGTGGAGTCAATTATTC+TGG 0.216307 2_1:+9527846 Msa0193720:intron
CAATTATATTGTGTTAATTC+TGG 0.216551 2_1:-9529499 None:intergenic
TCATGAATAATGGATATAAT+TGG 0.217336 2_1:-9528240 None:intergenic
GTTGGACATTGTGTTGAAAT+TGG 0.250807 2_1:+9529201 Msa0193720:CDS
TGGCATGATGGCCGCTGTTT+TGG 0.251529 2_1:+9529763 Msa0193720:CDS
TTCATTTCTTGTGCCTTTGA+TGG 0.265215 2_1:+9527915 Msa0193720:CDS
GTTCCAGTAATTGCATTATC+TGG 0.268188 2_1:+9529048 Msa0193720:CDS
ACACTCTTTCAGACACTCTT+TGG 0.275867 2_1:+9528171 Msa0193720:CDS
ATTCATTGTTGCTGTGTTCT+TGG 0.279147 2_1:+9531224 Msa0193720:CDS
TATAATATTTCTTCTTGCTT+TGG 0.282010 2_1:-9527573 None:intergenic
GCATAGATGCAAACCCTTCT+TGG 0.282942 2_1:+9527634 Msa0193720:CDS
TCTTCCTTCCATCATTTCAT+TGG 0.283411 2_1:+9527368 Msa0193720:five_prime_UTR
TTTGATGTTGGTCATGCTTT+TGG 0.285521 2_1:+9529743 Msa0193720:CDS
CCATGGCATTCCCCTATCTT+TGG 0.286512 2_1:-9531274 None:intergenic
GTCTTCTATGGAGGCCAATT+TGG 0.291156 2_1:-9528265 None:intergenic
TTGTATCAACCACAATGATA+TGG 0.300612 2_1:+9529431 Msa0193720:CDS
TGTGTCCTGTTTGGCCTTGT+TGG 0.301881 2_1:+9530537 Msa0193720:CDS
CATAGATGCAAACCCTTCTT+GGG 0.302981 2_1:+9527635 Msa0193720:CDS
GGCTCATAGTACCTCAATTA+AGG 0.307644 2_1:-9529789 None:intergenic
CATTATTCATGACTCCAAAT+TGG 0.314497 2_1:+9528251 Msa0193720:CDS
TGACACTGCTGAAATATTAA+TGG 0.322004 2_1:-9527521 None:intergenic
AATTATGGGCCATTTGTTCT+AGG 0.323560 2_1:+9528922 Msa0193720:CDS
AATAAGCCGAAAATAGCTTT+TGG 0.326517 2_1:-9531671 None:intergenic
GTTTAACATTGACTTCTTCA+TGG 0.331983 2_1:+9531536 Msa0193720:three_prime_UTR
TTTCTTGGGCTTATCTATTC+CGG 0.334179 2_1:+9530716 Msa0193720:CDS
AAACCAGATAATGCAATTAC+TGG 0.336298 2_1:-9529051 None:intergenic
TTTGGGCTTTAGTCAATTAT+GGG 0.341174 2_1:+9528908 Msa0193720:CDS
AACCAAATGTGGGTCTTCTA+TGG 0.351482 2_1:-9528277 None:intergenic
GACTACAAGCCTGTTTGAAT+TGG 0.353873 2_1:+9531571 Msa0193720:three_prime_UTR
ACCAAGTTTAGAACATTTCA+TGG 0.358356 2_1:+9531300 Msa0193720:CDS
ACAAGAATAGCTCCAAAGAT+AGG 0.366819 2_1:+9531262 Msa0193720:CDS
CATAACTTTCGTTGTTAAGA+TGG 0.369135 2_1:-9531381 None:intergenic
ATGAGGAGCCTCTTTATTAC+CGG 0.378181 2_1:+9530684 Msa0193720:CDS
TTCACTTCCAAGGCCCTTCA+TGG 0.379152 2_1:+9530753 Msa0193720:CDS
TTCTGAGCCGCGGTGTTGGC+TGG 0.386703 2_1:+9530133 Msa0193720:CDS
CTGCTCATACAAAGGCTAGA+TGG 0.390049 2_1:+9530778 Msa0193720:CDS
GGTGTTGGCTGGCAGGGAAT+TGG 0.392481 2_1:+9530144 Msa0193720:CDS
CCACCAATGGACCAACTTCA+TGG 0.399447 2_1:+9527600 Msa0193720:CDS
TTGTTTATCTGACAGTCAAC+TGG 0.406456 2_1:+9530057 Msa0193720:intron
GAGCCGCGGTGTTGGCTGGC+AGG 0.407123 2_1:+9530137 Msa0193720:CDS
TCAAATATGCCAATTCAAAC+AGG 0.410323 2_1:-9531580 None:intergenic
TCATTTCTTGTGCCTTTGAT+GGG 0.420771 2_1:+9527916 Msa0193720:CDS
AGCAGGACCATGAAGGGCCT+TGG 0.421593 2_1:-9530760 None:intergenic
TTGGAGGGAAAGGGAAAGTA+AGG 0.425984 2_1:-9527428 None:intergenic
CGGTGTTGCACTTGCTAGCC+GGG 0.429213 2_1:-9530097 None:intergenic
ACTCACCAACAAGGCCAAAC+AGG 0.434703 2_1:-9530542 None:intergenic
AGAGAGAATGTAGGGCTACT+AGG 0.436990 2_1:+9530294 Msa0193720:intron
CAATTTGGAGTCATGAATAA+TGG 0.437433 2_1:-9528250 None:intergenic
CTCCATAGAAGACCCACATT+TGG 0.438916 2_1:+9528275 Msa0193720:CDS
GTAGGAAAACCCCACTCAAA+AGG 0.440834 2_1:-9529719 None:intergenic
GCGGTGTTGCACTTGCTAGC+CGG 0.441312 2_1:-9530098 None:intergenic
GCTATGTACTGTGTCCTGTT+TGG 0.442936 2_1:+9530528 Msa0193720:CDS
ACCTCATTTCTTCTGCTCCA+TGG 0.445011 2_1:+9529539 Msa0193720:CDS
CATGAATAATGGATATAATT+GGG 0.445103 2_1:-9528239 None:intergenic
TGCACCTTGAACTGCTCTCA+TGG 0.449979 2_1:-9528856 None:intergenic
AAGAGAGAGACAATGAGAAA+TGG 0.452072 2_1:-9527349 None:intergenic
TCTGTTTGTAGCATTCTCTC+AGG 0.452906 2_1:+9529239 Msa0193720:CDS
GGAATTGGAATCTTGTTGAA+TGG 0.453442 2_1:+9530159 Msa0193720:CDS
CATGTTCTGAGCCGCGGTGT+TGG 0.457466 2_1:+9530129 Msa0193720:CDS
AATTAACACAATATAATTGC+AGG 0.457977 2_1:+9529503 Msa0193720:CDS
GAATAGATAAGCCCAAGAAA+AGG 0.462489 2_1:-9530713 None:intergenic
CAAGAATAGCTCCAAAGATA+GGG 0.463643 2_1:+9531263 Msa0193720:CDS
GGACTATTTGGAACACTGAC+TGG 0.466218 2_1:+9530180 Msa0193720:CDS
CTTATTTCTATAAGCTCTCT+AGG 0.469989 2_1:+9531688 Msa0193720:three_prime_UTR
AATAAATTACCTAGAACAAA+TGG 0.470454 2_1:-9528931 None:intergenic
ACAAAGTGTTGCTTAAATCA+TGG 0.473081 2_1:+9527545 Msa0193720:exon
TGAAATATTAATGGCTATGA+AGG 0.474957 2_1:-9527512 None:intergenic
TGTATCAACCACAATGATAT+GGG 0.477279 2_1:+9529432 Msa0193720:CDS
AGCCGCGGTGTTGGCTGGCA+GGG 0.477678 2_1:+9530138 Msa0193720:CDS
CCCTTCCTTTCAACCTCCAC+CGG 0.480141 2_1:+9531349 Msa0193720:CDS
TTCAGACACTCTTTGGAACT+CGG 0.481780 2_1:+9528178 Msa0193720:CDS
TCCATGAAATGTTCTAAACT+TGG 0.485703 2_1:-9531301 None:intergenic
AGAAACAACTTTGGAGGGAA+AGG 0.489318 2_1:-9527438 None:intergenic
AGAGTCATTCAAATTTCAGC+AGG 0.489686 2_1:+9530339 Msa0193720:CDS
TGAAAAGACAGAAACAACTT+TGG 0.496810 2_1:-9527447 None:intergenic
AAAAGTATGATTTCTAGATA+AGG 0.496922 2_1:+9531430 Msa0193720:three_prime_UTR
AATAGATAAGCCCAAGAAAA+GGG 0.497016 2_1:-9530712 None:intergenic
AGGGAAAGGGAAAGTAAGGT+TGG 0.497576 2_1:-9527424 None:intergenic
GGTAAAGACCAATGAAATGA+TGG 0.497716 2_1:-9527376 None:intergenic
AAAGCAAATCTCTCTAGTAT+TGG 0.497957 2_1:-9529406 None:intergenic
ACCATGACAGAGAGAATGTA+GGG 0.498443 2_1:+9530286 Msa0193720:intron
TGCTCATACAAAGGCTAGAT+GGG 0.499033 2_1:+9530779 Msa0193720:CDS
GCACATCTCTTAACAACAAG+TGG 0.507738 2_1:+9529460 Msa0193720:CDS
ATGATATTCTTCTCAATGCT+AGG 0.508459 2_1:+9530366 Msa0193720:CDS
AGAAATGTACTAACCAAATG+TGG 0.512832 2_1:-9528288 None:intergenic
CCATGAAGTTGGTCCATTGG+TGG 0.513106 2_1:-9527600 None:intergenic
CATCTAGCCTTTGTATGAGC+AGG 0.514342 2_1:-9530777 None:intergenic
TAGGAAAACCCCACTCAAAA+GGG 0.515152 2_1:-9529718 None:intergenic
ATCAAAGGCACAAGAAATGA+AGG 0.517148 2_1:-9527913 None:intergenic
ACAGTGGAGTCAATTATTCT+GGG 0.518411 2_1:+9527847 Msa0193720:intron
GTGATGACTGTGTATCATAT+TGG 0.522772 2_1:+9531485 Msa0193720:three_prime_UTR
AAACCCCACTCAAAAGGGTA+TGG 0.522899 2_1:-9529713 None:intergenic
ACCGGTGGAGGTTGAAAGGA+AGG 0.527236 2_1:-9531350 None:intergenic
TTTCTTGTGCCTTTGATGGG+TGG 0.532477 2_1:+9527919 Msa0193720:CDS
AACTTTCGTTGTTAAGATGG+AGG 0.534653 2_1:-9531378 None:intergenic
CTTAAAGAAAATATGTTCAG+AGG 0.537843 2_1:+9531407 Msa0193720:three_prime_UTR
ACCATGGAGCAGAAGAAATG+AGG 0.539829 2_1:-9529540 None:intergenic
TTTCAGAGAATTCACTTCCA+AGG 0.541420 2_1:+9530743 Msa0193720:CDS
GTCGTACCACAGGGAACCCT+CGG 0.543240 2_1:-9529086 None:intergenic
AAAACCATGAGAGCAGTTCA+AGG 0.544297 2_1:+9528852 Msa0193720:CDS
GAAACAACTTTGGAGGGAAA+GGG 0.544759 2_1:-9527437 None:intergenic
ATGCCATGAAGTTGGTCCAT+TGG 0.548504 2_1:-9527603 None:intergenic
GCATGACCAACATCAAATGT+AGG 0.550797 2_1:-9529737 None:intergenic
AAAGACAGAAACAACTTTGG+AGG 0.552398 2_1:-9527444 None:intergenic
ACTTTCGTTGTTAAGATGGA+GGG 0.553811 2_1:-9531377 None:intergenic
GGAGTGAGTCAATGTTGAAA+AGG 0.557183 2_1:-9527403 None:intergenic
CTCAGAACATGAGGAGGCGG+CGG 0.558241 2_1:-9530117 None:intergenic
AACTCGGTTACCAACAGTGA+TGG 0.563295 2_1:+9528194 Msa0193720:CDS
AACAATGAATGCAACAGTTG+AGG 0.566026 2_1:-9531211 None:intergenic
TCATGGTCCTGCTCATACAA+AGG 0.566133 2_1:+9530770 Msa0193720:CDS
GCCCAAGAAAAGGGCAACAC+CGG 0.568156 2_1:-9530703 None:intergenic
CATGAAGTTGGTCCATTGGT+GGG 0.571065 2_1:-9527599 None:intergenic
TGCTACAAACAGAATTAACA+TGG 0.573720 2_1:-9529229 None:intergenic
AAGACAGAAACAACTTTGGA+GGG 0.575540 2_1:-9527443 None:intergenic
GGGCAACACCGGTAATAAAG+AGG 0.575808 2_1:-9530692 None:intergenic
AGTGGATACTAACCCCAAGA+AGG 0.577397 2_1:-9527648 None:intergenic
ACTCGGTTACCAACAGTGAT+GGG 0.579565 2_1:+9528195 Msa0193720:CDS
AGTACTCTATGCCATGAAGT+TGG 0.580671 2_1:-9527611 None:intergenic
TTGTATGAGCAGGACCATGA+AGG 0.580694 2_1:-9530767 None:intergenic
CGGCTCAGAACATGAGGAGG+CGG 0.580815 2_1:-9530120 None:intergenic
TAAGACCCTCCCATCACTGT+TGG 0.582978 2_1:-9528204 None:intergenic
GTGAATTCTCTGAAATACTC+CGG 0.584231 2_1:-9530735 None:intergenic
TGGAGCAGAAGAAATGAGGT+TGG 0.588053 2_1:-9529536 None:intergenic
CTACTAGGAAGTACTCGTGT+TGG 0.588073 2_1:+9530309 Msa0193720:CDS
AAGAATAGCTCCAAAGATAG+GGG 0.595815 2_1:+9531264 Msa0193720:CDS
ACACCGCGGCTCAGAACATG+AGG 0.597392 2_1:-9530126 None:intergenic
GAGCATACACAGCTGCGTCC+CGG 0.599026 2_1:+9530079 Msa0193720:CDS
TGTTGTTAAGAGATGTGCAT+AGG 0.600614 2_1:-9529455 None:intergenic
AGTCAATGTTGAAAAGGTGA+AGG 0.601001 2_1:-9527397 None:intergenic
AACCATGACAGAGAGAATGT+AGG 0.602496 2_1:+9530285 Msa0193720:intron
ACATCAGTTCCACCCATCAA+AGG 0.612232 2_1:-9527928 None:intergenic
GTGGATACTAACCCCAAGAA+GGG 0.612506 2_1:-9527647 None:intergenic
CCTCCTCATGTTCTGAGCCG+CGG 0.613487 2_1:+9530123 Msa0193720:CDS
AATATTATACCACCCACCAA+TGG 0.613532 2_1:+9527587 Msa0193720:CDS
TGTATGAGCAGGACCATGAA+GGG 0.622145 2_1:-9530766 None:intergenic
GAAATGTACTAACCAAATGT+GGG 0.622722 2_1:-9528287 None:intergenic
TCAGGGTGATAAAGTGAGAG+TGG 0.627396 2_1:+9528116 Msa0193720:intron
CAAATGTGGGTCTTCTATGG+AGG 0.629533 2_1:-9528274 None:intergenic
AAGACCAATGAAATGATGGA+AGG 0.630403 2_1:-9527372 None:intergenic
CCGCGGCTCAGAACATGAGG+AGG 0.643457 2_1:-9530123 None:intergenic
ATAGATGCAAACCCTTCTTG+GGG 0.648257 2_1:+9527636 Msa0193720:CDS
TTTATTAATACTCACCAACA+AGG 0.649656 2_1:-9530551 None:intergenic
GTTCTAAACTTGGTCCACCA+TGG 0.655549 2_1:-9531291 None:intergenic
CGGTTACCAACAGTGATGGG+AGG 0.660854 2_1:+9528198 Msa0193720:CDS
TTACTAACATGAACTCAATG+AGG 0.664480 2_1:+9530667 Msa0193720:CDS
GGTTACCAACAGTGATGGGA+GGG 0.664821 2_1:+9528199 Msa0193720:CDS
GAAGTTGGTCCATTGGTGGG+TGG 0.667936 2_1:-9527596 None:intergenic
GCTACAAACAGAATTAACAT+GGG 0.677346 2_1:-9529228 None:intergenic
TGCATAGGCCCATATCATTG+TGG 0.683156 2_1:-9529440 None:intergenic
AAGATAGGGGAATGCCATGG+TGG 0.684562 2_1:+9531277 Msa0193720:CDS
ATTACTGGAACCATTCCAAG+TGG 0.687109 2_1:-9529036 None:intergenic
CCGGTGGAGGTTGAAAGGAA+GGG 0.694820 2_1:-9531349 None:intergenic
TTCCCTGCCAGCCAACACCG+CGG 0.694982 2_1:-9530140 None:intergenic
CCAAAGATAGGGGAATGCCA+TGG 0.696229 2_1:+9531274 Msa0193720:CDS
ATTTAACCGAGGGTTCCCTG+TGG 0.725174 2_1:+9529080 Msa0193720:CDS
AATTAAGGAGACCAAAACAG+CGG 0.734250 2_1:-9529774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTTGATAATCTA+GGG - chr2_1:9527974-9527993 None:intergenic 10.0%
!!! TTTATTTTTTTTGATAATCT+AGG - chr2_1:9527975-9527994 None:intergenic 10.0%
!! AAAAATAAAGAGAAGAAAAA+GGG - chr2_1:9527489-9527508 None:intergenic 15.0%
!! TTGAATATCAAAGAAATTAA+GGG - chr2_1:9528010-9528029 None:intergenic 15.0%
!! ATTGAATATCAAAGAAATTA+AGG - chr2_1:9528011-9528030 None:intergenic 15.0%
!!! AGTTGGTATTTATTAATTAT+TGG + chr2_1:9528066-9528085 Msa0193720:intron 15.0%
!! ATAGATTATAAAAATGTACT+AGG - chr2_1:9528324-9528343 None:intergenic 15.0%
!!! GTTTTCTATTTAAAAATATG+CGG - chr2_1:9529604-9529623 None:intergenic 15.0%
!! GAAAAATAAAGAGAAGAAAA+AGG - chr2_1:9527490-9527509 None:intergenic 20.0%
!! TATAATATTTCTTCTTGCTT+TGG - chr2_1:9527576-9527595 None:intergenic 20.0%
!!! TATTTAGTTTATTATGAGCT+AGG + chr2_1:9527778-9527797 Msa0193720:intron 20.0%
!!! CATGAATAATGGATATAATT+GGG - chr2_1:9528242-9528261 None:intergenic 20.0%
!!! TCATGAATAATGGATATAAT+TGG - chr2_1:9528243-9528262 None:intergenic 20.0%
!!! TTTTCTATTTTACGATGTTT+AGG + chr2_1:9528527-9528546 Msa0193720:intron 20.0%
!!! TTTCTATTTTACGATGTTTA+GGG + chr2_1:9528528-9528547 Msa0193720:intron 20.0%
!!! TTTTCTATTATACAATGCTT+AGG + chr2_1:9528720-9528739 Msa0193720:intron 20.0%
!! AACAAATCTCTGAATATAAA+TGG - chr2_1:9528832-9528851 None:intergenic 20.0%
!! AATAAATTACCTAGAACAAA+TGG - chr2_1:9528934-9528953 None:intergenic 20.0%
!! CAATTATATTGTGTTAATTC+TGG - chr2_1:9529502-9529521 None:intergenic 20.0%
!! AATTAACACAATATAATTGC+AGG + chr2_1:9529503-9529522 Msa0193720:CDS 20.0%
!!! AACTACTTAAGAGATTATTT+TGG - chr2_1:9529571-9529590 None:intergenic 20.0%
!! TGAAATAAGTTAATCCAAAA+AGG - chr2_1:9529813-9529832 None:intergenic 20.0%
!!! TTCATAGTTTTCACTTTAAA+TGG + chr2_1:9530241-9530260 Msa0193720:intron 20.0%
!!! GAAATAAAGATGATTTTGAT+AGG - chr2_1:9530417-9530436 None:intergenic 20.0%
!! TTATGTTTCAATTATTTGAG+AGG + chr2_1:9530818-9530837 Msa0193720:intron 20.0%
!!! TGATATTTTATTGAAACCAA+TGG + chr2_1:9530933-9530952 Msa0193720:intron 20.0%
!!! AAAAGTATGATTTCTAGATA+AGG + chr2_1:9531430-9531449 Msa0193720:three_prime_UTR 20.0%
! TGAAATATTAATGGCTATGA+AGG - chr2_1:9527515-9527534 None:intergenic 25.0%
! TTCATTATATAATGGTGCTT+TGG + chr2_1:9527720-9527739 Msa0193720:intron 25.0%
! TATGATTCAATGAATGATTC+AGG + chr2_1:9528098-9528117 Msa0193720:intron 25.0%
! ATGATTCAATGAATGATTCA+GGG + chr2_1:9528099-9528118 Msa0193720:intron 25.0%
! CTACTTATCTGTTTACTTTA+GGG - chr2_1:9528430-9528449 None:intergenic 25.0%
! TCTACTTATCTGTTTACTTT+AGG - chr2_1:9528431-9528450 None:intergenic 25.0%
!! TCTTTTCATCTCAATTTACT+CGG + chr2_1:9528582-9528601 Msa0193720:intron 25.0%
! TGAAATGTACTACTAAGAAA+GGG - chr2_1:9528629-9528648 None:intergenic 25.0%
! TTGAAATGTACTACTAAGAA+AGG - chr2_1:9528630-9528649 None:intergenic 25.0%
!! CAATTTTAAGCTCATGATTT+TGG + chr2_1:9528647-9528666 Msa0193720:intron 25.0%
!! ATCAAGCATACAGATTATTT+TGG + chr2_1:9528890-9528909 Msa0193720:CDS 25.0%
!! TCAAGCATACAGATTATTTT+GGG + chr2_1:9528891-9528910 Msa0193720:CDS 25.0%
! TGAAAAACCTGGAAATTAAT+AGG - chr2_1:9529014-9529033 None:intergenic 25.0%
!!! TTTTTGTTTCCTTTTTCTTC+AGG + chr2_1:9529179-9529198 Msa0193720:intron 25.0%
! TTTACAACAATATCTCAACA+AGG - chr2_1:9529657-9529676 None:intergenic 25.0%
! AATAATACATGTCTTTCTTC+AGG + chr2_1:9530459-9530478 Msa0193720:intron 25.0%
! TTTATTAATACTCACCAACA+AGG - chr2_1:9530554-9530573 None:intergenic 25.0%
! TCATAACAAAGAGATAGAAA+AGG - chr2_1:9530601-9530620 None:intergenic 25.0%
! GAACTGAAAAACAAATCAAA+AGG - chr2_1:9531160-9531179 None:intergenic 25.0%
! CTTAAAGAAAATATGTTCAG+AGG + chr2_1:9531407-9531426 Msa0193720:three_prime_UTR 25.0%
!!! ATTTTGTTATTGTGAGAGTT+AGG + chr2_1:9531458-9531477 Msa0193720:three_prime_UTR 25.0%
TGAAAAGACAGAAACAACTT+TGG - chr2_1:9527450-9527469 None:intergenic 30.0%
TGACACTGCTGAAATATTAA+TGG - chr2_1:9527524-9527543 None:intergenic 30.0%
!! ACAAAGTGTTGCTTAAATCA+TGG + chr2_1:9527545-9527564 Msa0193720:exon 30.0%
!! ATGTTTTGAACTATGAACAG+TGG + chr2_1:9527831-9527850 Msa0193720:intron 30.0%
! CAATTTGGAGTCATGAATAA+TGG - chr2_1:9528253-9528272 None:intergenic 30.0%
CATTATTCATGACTCCAAAT+TGG + chr2_1:9528251-9528270 Msa0193720:CDS 30.0%
GAAATGTACTAACCAAATGT+GGG - chr2_1:9528290-9528309 None:intergenic 30.0%
AGAAATGTACTAACCAAATG+TGG - chr2_1:9528291-9528310 None:intergenic 30.0%
CAATGATTGATTACTGAGTT+CGG + chr2_1:9528463-9528482 Msa0193720:intron 30.0%
!! TTTTGGGCTTTAGTCAATTA+TGG + chr2_1:9528907-9528926 Msa0193720:CDS 30.0%
! TTTGGGCTTTAGTCAATTAT+GGG + chr2_1:9528908-9528927 Msa0193720:CDS 30.0%
AAAACCTGGAAATTAATAGG+AGG - chr2_1:9529011-9529030 None:intergenic 30.0%
AAACCAGATAATGCAATTAC+TGG - chr2_1:9529054-9529073 None:intergenic 30.0%
!! GTAATTGCATTATCTGGTTT+TGG + chr2_1:9529054-9529073 Msa0193720:CDS 30.0%
GCTACAAACAGAATTAACAT+GGG - chr2_1:9529231-9529250 None:intergenic 30.0%
TGCTACAAACAGAATTAACA+TGG - chr2_1:9529232-9529251 None:intergenic 30.0%
TGACATCATAAAAGTGAAGT+TGG - chr2_1:9529270-9529289 None:intergenic 30.0%
AAAGCAAATCTCTCTAGTAT+TGG - chr2_1:9529409-9529428 None:intergenic 30.0%
TTGTATCAACCACAATGATA+TGG + chr2_1:9529431-9529450 Msa0193720:CDS 30.0%
TGTATCAACCACAATGATAT+GGG + chr2_1:9529432-9529451 Msa0193720:CDS 30.0%
!!! GATTATTTTGGTACTAACCA+TGG - chr2_1:9529559-9529578 None:intergenic 30.0%
TCTTAAATATGTTGCCTTAC+AGG + chr2_1:9529681-9529700 Msa0193720:intron 30.0%
! AGACTGTTTGAAATAGCTTA+TGG + chr2_1:9529860-9529879 Msa0193720:intron 30.0%
! TTTGAAATAGCTTATGGCTA+CGG + chr2_1:9529866-9529885 Msa0193720:intron 30.0%
!! GTTGTTTTCATAAGCTATCA+TGG - chr2_1:9529939-9529958 None:intergenic 30.0%
!! ATCTTGTTGAATGGACTATT+TGG + chr2_1:9530168-9530187 Msa0193720:CDS 30.0%
ATGATATTCTTCTCAATGCT+AGG + chr2_1:9530366-9530385 Msa0193720:CDS 30.0%
TGTCTTTCTTCAGGAAAATT+TGG + chr2_1:9530468-9530487 Msa0193720:intron 30.0%
AGTACATAGCAGCAAAAATA+GGG - chr2_1:9530518-9530537 None:intergenic 30.0%
TTACTAACATGAACTCAATG+AGG + chr2_1:9530667-9530686 Msa0193720:CDS 30.0%
AATAGATAAGCCCAAGAAAA+GGG - chr2_1:9530715-9530734 None:intergenic 30.0%
!! TGCATGTACTGATTTATGTA+TGG + chr2_1:9530977-9530996 Msa0193720:intron 30.0%
ATAGTTGTGAATTCTTCATC+TGG + chr2_1:9531001-9531020 Msa0193720:intron 30.0%
! ACCAAGTTTAGAACATTTCA+TGG + chr2_1:9531300-9531319 Msa0193720:CDS 30.0%
! TCCATGAAATGTTCTAAACT+TGG - chr2_1:9531304-9531323 None:intergenic 30.0%
CATAACTTTCGTTGTTAAGA+TGG - chr2_1:9531384-9531403 None:intergenic 30.0%
!! GTTTAACATTGACTTCTTCA+TGG + chr2_1:9531536-9531555 Msa0193720:three_prime_UTR 30.0%
TCAAATATGCCAATTCAAAC+AGG - chr2_1:9531583-9531602 None:intergenic 30.0%
! AATAAGCCGAAAATAGCTTT+TGG - chr2_1:9531674-9531693 None:intergenic 30.0%
AAGAGAGAGACAATGAGAAA+TGG - chr2_1:9527352-9527371 None:intergenic 35.0%
TCTTCCTTCCATCATTTCAT+TGG + chr2_1:9527368-9527387 Msa0193720:five_prime_UTR 35.0%
! AAGACCAATGAAATGATGGA+AGG - chr2_1:9527375-9527394 None:intergenic 35.0%
GGTAAAGACCAATGAAATGA+TGG - chr2_1:9527379-9527398 None:intergenic 35.0%
AGTCAATGTTGAAAAGGTGA+AGG - chr2_1:9527400-9527419 None:intergenic 35.0%
AAGACAGAAACAACTTTGGA+GGG - chr2_1:9527446-9527465 None:intergenic 35.0%
AAAGACAGAAACAACTTTGG+AGG - chr2_1:9527447-9527466 None:intergenic 35.0%
AAGAAAAAGGGTTGAGAGAA+AGG - chr2_1:9527477-9527496 None:intergenic 35.0%
AATATTATACCACCCACCAA+TGG + chr2_1:9527587-9527606 Msa0193720:CDS 35.0%
TAAGAATGAAAATGCAGAGG+AGG - chr2_1:9527676-9527695 None:intergenic 35.0%
GCTTAAGAATGAAAATGCAG+AGG - chr2_1:9527679-9527698 None:intergenic 35.0%
! TGCTTTGGTTCATGCTATAT+AGG + chr2_1:9527735-9527754 Msa0193720:intron 35.0%
! ATTATGAGCTAGGACCATTT+TGG + chr2_1:9527788-9527807 Msa0193720:intron 35.0%
AACAGTGGAGTCAATTATTC+TGG + chr2_1:9527846-9527865 Msa0193720:intron 35.0%
ACAGTGGAGTCAATTATTCT+GGG + chr2_1:9527847-9527866 Msa0193720:intron 35.0%
! GGGTTTTCAGCATTACATTT+TGG + chr2_1:9527867-9527886 Msa0193720:CDS 35.0%
!!! CAGCATTACATTTTGGCTTT+AGG + chr2_1:9527874-9527893 Msa0193720:CDS 35.0%
! ATCAAAGGCACAAGAAATGA+AGG - chr2_1:9527916-9527935 None:intergenic 35.0%
TTCATTTCTTGTGCCTTTGA+TGG + chr2_1:9527915-9527934 Msa0193720:CDS 35.0%
TCATTTCTTGTGCCTTTGAT+GGG + chr2_1:9527916-9527935 Msa0193720:CDS 35.0%
!!! CAGATTCTGCTTTTTGTAGA+AGG + chr2_1:9528141-9528160 Msa0193720:CDS 35.0%
!! TATCTGTTTACTTTAGGGCA+GGG - chr2_1:9528425-9528444 None:intergenic 35.0%
!! TTATCTGTTTACTTTAGGGC+AGG - chr2_1:9528426-9528445 None:intergenic 35.0%
GTTAAAGACCAAGACACAAT+TGG - chr2_1:9528489-9528508 None:intergenic 35.0%
! GTTTAGGGTTATAACGTACA+AGG + chr2_1:9528543-9528562 Msa0193720:intron 35.0%
ATTAGTGTTAGAACCGAGTT+TGG + chr2_1:9528686-9528705 Msa0193720:intron 35.0%
AAGCTACAATTAGCCAAACT+CGG - chr2_1:9528702-9528721 None:intergenic 35.0%
AATTATGGGCCATTTGTTCT+AGG + chr2_1:9528922-9528941 Msa0193720:CDS 35.0%
GTTTCCTCCTATTAATTTCC+AGG + chr2_1:9529004-9529023 Msa0193720:intron 35.0%
GTTCCAGTAATTGCATTATC+TGG + chr2_1:9529048-9529067 Msa0193720:CDS 35.0%
!!! GTTTTGGCTTATTTAACCGA+GGG + chr2_1:9529070-9529089 Msa0193720:CDS 35.0%
! TGTTTCCTTTTTCTTCAGGT+TGG + chr2_1:9529183-9529202 Msa0193720:intron 35.0%
AATGTCCAACCTGAAGAAAA+AGG - chr2_1:9529191-9529210 None:intergenic 35.0%
GTTGGACATTGTGTTGAAAT+TGG + chr2_1:9529201-9529220 Msa0193720:CDS 35.0%
TGTTGTTAAGAGATGTGCAT+AGG - chr2_1:9529458-9529477 None:intergenic 35.0%
TATGGAATCTTCATCCTGTA+AGG - chr2_1:9529698-9529717 None:intergenic 35.0%
! GGTTTTCCTACATTTGATGT+TGG + chr2_1:9529731-9529750 Msa0193720:CDS 35.0%
! TTTGATGTTGGTCATGCTTT+TGG + chr2_1:9529743-9529762 Msa0193720:CDS 35.0%
AATTAAGGAGACCAAAACAG+CGG - chr2_1:9529777-9529796 None:intergenic 35.0%
!!! TGTTTTGGTCTCCTTAATTG+AGG + chr2_1:9529778-9529797 Msa0193720:CDS 35.0%
! GCTATTTCAAACAGTCTAAC+AGG - chr2_1:9529857-9529876 None:intergenic 35.0%
TTGTTTATCTGACAGTCAAC+TGG + chr2_1:9530057-9530076 Msa0193720:intron 35.0%
GGAATTGGAATCTTGTTGAA+TGG + chr2_1:9530159-9530178 Msa0193720:CDS 35.0%
AGAGTCATTCAAATTTCAGC+AGG + chr2_1:9530339-9530358 Msa0193720:CDS 35.0%
ATAGCAGCAAAAATAGGGAA+GGG - chr2_1:9530513-9530532 None:intergenic 35.0%
CAGTACATAGCAGCAAAAAT+AGG - chr2_1:9530519-9530538 None:intergenic 35.0%
! AATTGTGTTTTCAGCTTCTG+TGG + chr2_1:9530626-9530645 Msa0193720:intron 35.0%
! ATTGTGTTTTCAGCTTCTGT+GGG + chr2_1:9530627-9530646 Msa0193720:intron 35.0%
GAATAGATAAGCCCAAGAAA+AGG - chr2_1:9530716-9530735 None:intergenic 35.0%
TTTCTTGGGCTTATCTATTC+CGG + chr2_1:9530716-9530735 Msa0193720:CDS 35.0%
!! GTGAATTCTCTGAAATACTC+CGG - chr2_1:9530738-9530757 None:intergenic 35.0%
TTTCAGAGAATTCACTTCCA+AGG + chr2_1:9530743-9530762 Msa0193720:CDS 35.0%
!! TCATCGGTTTCTATTTGTGA+TGG + chr2_1:9531069-9531088 Msa0193720:intron 35.0%
AACAATGAATGCAACAGTTG+AGG - chr2_1:9531214-9531233 None:intergenic 35.0%
ATTCATTGTTGCTGTGTTCT+TGG + chr2_1:9531224-9531243 Msa0193720:CDS 35.0%
ACAAGAATAGCTCCAAAGAT+AGG + chr2_1:9531262-9531281 Msa0193720:CDS 35.0%
CAAGAATAGCTCCAAAGATA+GGG + chr2_1:9531263-9531282 Msa0193720:CDS 35.0%
AAGAATAGCTCCAAAGATAG+GGG + chr2_1:9531264-9531283 Msa0193720:CDS 35.0%
ACTTTCGTTGTTAAGATGGA+GGG - chr2_1:9531380-9531399 None:intergenic 35.0%
AACTTTCGTTGTTAAGATGG+AGG - chr2_1:9531381-9531400 None:intergenic 35.0%
GTGATGACTGTGTATCATAT+TGG + chr2_1:9531485-9531504 Msa0193720:three_prime_UTR 35.0%
! TTCTTCATGGCCTTTCTTTT+TGG + chr2_1:9531549-9531568 Msa0193720:three_prime_UTR 35.0%
!! GCATGTCCAAAAGCTATTTT+CGG + chr2_1:9531665-9531684 Msa0193720:three_prime_UTR 35.0%
GGAGTGAGTCAATGTTGAAA+AGG - chr2_1:9527406-9527425 None:intergenic 40.0%
! GAAACAACTTTGGAGGGAAA+GGG - chr2_1:9527440-9527459 None:intergenic 40.0%
! AGAAACAACTTTGGAGGGAA+AGG - chr2_1:9527441-9527460 None:intergenic 40.0%
AAAAAGGGTTGAGAGAAAGG+TGG - chr2_1:9527474-9527493 None:intergenic 40.0%
AGTACTCTATGCCATGAAGT+TGG - chr2_1:9527614-9527633 None:intergenic 40.0%
CATAGATGCAAACCCTTCTT+GGG + chr2_1:9527635-9527654 Msa0193720:CDS 40.0%
ATAGATGCAAACCCTTCTTG+GGG + chr2_1:9527636-9527655 Msa0193720:CDS 40.0%
CACTCTCAGTGAAACCAAAA+TGG - chr2_1:9527805-9527824 None:intergenic 40.0%
TCCTAGATAGAGAAGAGAGT+TGG + chr2_1:9528049-9528068 Msa0193720:intron 40.0%
ACCAACTCTCTTCTCTATCT+AGG - chr2_1:9528053-9528072 None:intergenic 40.0%
ACACTCTTTCAGACACTCTT+TGG + chr2_1:9528171-9528190 Msa0193720:CDS 40.0%
!! TTCAGACACTCTTTGGAACT+CGG + chr2_1:9528178-9528197 Msa0193720:CDS 40.0%
AACCAAATGTGGGTCTTCTA+TGG - chr2_1:9528280-9528299 None:intergenic 40.0%
AAAACCATGAGAGCAGTTCA+AGG + chr2_1:9528852-9528871 Msa0193720:CDS 40.0%
!! GTTTTTCAGTCCACTTGGAA+TGG + chr2_1:9529026-9529045 Msa0193720:CDS 40.0%
ATTACTGGAACCATTCCAAG+TGG - chr2_1:9529039-9529058 None:intergenic 40.0%
!!! GGTTTTGGCTTATTTAACCG+AGG + chr2_1:9529069-9529088 Msa0193720:CDS 40.0%
TGAACTATTGTCGTACCACA+GGG - chr2_1:9529098-9529117 None:intergenic 40.0%
TCTTAAGTTCACCTCTTCCT+AGG + chr2_1:9529136-9529155 Msa0193720:intron 40.0%
TAAAATACGAGCCTAGGAAG+AGG - chr2_1:9529150-9529169 None:intergenic 40.0%
AGAAGCTAAAATACGAGCCT+AGG - chr2_1:9529156-9529175 None:intergenic 40.0%
TCTGTTTGTAGCATTCTCTC+AGG + chr2_1:9529239-9529258 Msa0193720:CDS 40.0%
GCACATCTCTTAACAACAAG+TGG + chr2_1:9529460-9529479 Msa0193720:CDS 40.0%
TCAACAAGGTACAAACTCAC+TGG - chr2_1:9529643-9529662 None:intergenic 40.0%
! AGATTCCATACCCTTTTGAG+TGG + chr2_1:9529708-9529727 Msa0193720:CDS 40.0%
!! GATTCCATACCCTTTTGAGT+GGG + chr2_1:9529709-9529728 Msa0193720:CDS 40.0%
!! ATTCCATACCCTTTTGAGTG+GGG + chr2_1:9529710-9529729 Msa0193720:CDS 40.0%
TAGGAAAACCCCACTCAAAA+GGG - chr2_1:9529721-9529740 None:intergenic 40.0%
GCATGACCAACATCAAATGT+AGG - chr2_1:9529740-9529759 None:intergenic 40.0%
GGCTCATAGTACCTCAATTA+AGG - chr2_1:9529792-9529811 None:intergenic 40.0%
!! TGAGGTACTATGAGCCTTTT+TGG + chr2_1:9529796-9529815 Msa0193720:intron 40.0%
AACCATGACAGAGAGAATGT+AGG + chr2_1:9530285-9530304 Msa0193720:intron 40.0%
ACCATGACAGAGAGAATGTA+GGG + chr2_1:9530286-9530305 Msa0193720:intron 40.0%
CATAGCAGCAAAAATAGGGA+AGG - chr2_1:9530514-9530533 None:intergenic 40.0%
AAAGGCTCAAACACAGTCAA+AGG - chr2_1:9530583-9530602 None:intergenic 40.0%
! TTGTGTTTTCAGCTTCTGTG+GGG + chr2_1:9530628-9530647 Msa0193720:intron 40.0%
ATGAGGAGCCTCTTTATTAC+CGG + chr2_1:9530684-9530703 Msa0193720:CDS 40.0%
TGCTCATACAAAGGCTAGAT+GGG + chr2_1:9530779-9530798 Msa0193720:CDS 40.0%
AGATAGTGAGTAGTAGCCAT+TGG - chr2_1:9530952-9530971 None:intergenic 40.0%
ACAGAACAGTTACGCATCAT+CGG + chr2_1:9531053-9531072 Msa0193720:intron 40.0%
GGTGTAGAACTCTTCATTTC+TGG - chr2_1:9531331-9531350 None:intergenic 40.0%
GTTAAGATGGAGGGAAAAAC+CGG - chr2_1:9531371-9531390 None:intergenic 40.0%
GGCTTGTAGTCCAAAAAGAA+AGG - chr2_1:9531562-9531581 None:intergenic 40.0%
GACTACAAGCCTGTTTGAAT+TGG + chr2_1:9531571-9531590 Msa0193720:three_prime_UTR 40.0%
AGGGAAAGGGAAAGTAAGGT+TGG - chr2_1:9527427-9527446 None:intergenic 45.0%
TTGGAGGGAAAGGGAAAGTA+AGG - chr2_1:9527431-9527450 None:intergenic 45.0%
! CATGAAGTTGGTCCATTGGT+GGG - chr2_1:9527602-9527621 None:intergenic 45.0%
! ATGCCATGAAGTTGGTCCAT+TGG - chr2_1:9527606-9527625 None:intergenic 45.0%
GCATAGATGCAAACCCTTCT+TGG + chr2_1:9527634-9527653 Msa0193720:CDS 45.0%
GTGGATACTAACCCCAAGAA+GGG - chr2_1:9527650-9527669 None:intergenic 45.0%
AGTGGATACTAACCCCAAGA+AGG - chr2_1:9527651-9527670 None:intergenic 45.0%
GAAAATGCAGAGGAGGAAAG+TGG - chr2_1:9527669-9527688 None:intergenic 45.0%
TTTCTTGTGCCTTTGATGGG+TGG + chr2_1:9527919-9527938 Msa0193720:CDS 45.0%
ACATCAGTTCCACCCATCAA+AGG - chr2_1:9527931-9527950 None:intergenic 45.0%
TCAGGGTGATAAAGTGAGAG+TGG + chr2_1:9528116-9528135 Msa0193720:intron 45.0%
AACTCGGTTACCAACAGTGA+TGG + chr2_1:9528194-9528213 Msa0193720:CDS 45.0%
ACTCGGTTACCAACAGTGAT+GGG + chr2_1:9528195-9528214 Msa0193720:CDS 45.0%
! GGGAGGGTCTTATGCATTTA+TGG + chr2_1:9528215-9528234 Msa0193720:CDS 45.0%
GTCTTCTATGGAGGCCAATT+TGG - chr2_1:9528268-9528287 None:intergenic 45.0%
CAAATGTGGGTCTTCTATGG+AGG - chr2_1:9528277-9528296 None:intergenic 45.0%
CTCCATAGAAGACCCACATT+TGG + chr2_1:9528275-9528294 Msa0193720:CDS 45.0%
!! GTTTACTTTAGGGCAGGGTT+TGG - chr2_1:9528420-9528439 None:intergenic 45.0%
!! TCCAGGTTTTTCAGTCCACT+TGG + chr2_1:9529021-9529040 Msa0193720:intron 45.0%
!! TCCAAGTGGACTGAAAAACC+TGG - chr2_1:9529025-9529044 None:intergenic 45.0%
GTGAACTATTGTCGTACCAC+AGG - chr2_1:9529099-9529118 None:intergenic 45.0%
TGCATAGGCCCATATCATTG+TGG - chr2_1:9529443-9529462 None:intergenic 45.0%
TGGAGCAGAAGAAATGAGGT+TGG - chr2_1:9529539-9529558 None:intergenic 45.0%
ACCTCATTTCTTCTGCTCCA+TGG + chr2_1:9529539-9529558 Msa0193720:CDS 45.0%
ACCATGGAGCAGAAGAAATG+AGG - chr2_1:9529543-9529562 None:intergenic 45.0%
AAACCCCACTCAAAAGGGTA+TGG - chr2_1:9529716-9529735 None:intergenic 45.0%
GTAGGAAAACCCCACTCAAA+AGG - chr2_1:9529722-9529741 None:intergenic 45.0%
! TGGTCATGCTTTTGGCATGA+TGG + chr2_1:9529751-9529770 Msa0193720:CDS 45.0%
! GGACTATTTGGAACACTGAC+TGG + chr2_1:9530180-9530199 Msa0193720:CDS 45.0%
AGAGAGAATGTAGGGCTACT+AGG + chr2_1:9530294-9530313 Msa0193720:intron 45.0%
!! CTACTAGGAAGTACTCGTGT+TGG + chr2_1:9530309-9530328 Msa0193720:CDS 45.0%
GCTATGTACTGTGTCCTGTT+TGG + chr2_1:9530528-9530547 Msa0193720:CDS 45.0%
TGTATGAGCAGGACCATGAA+GGG - chr2_1:9530769-9530788 None:intergenic 45.0%
TTGTATGAGCAGGACCATGA+AGG - chr2_1:9530770-9530789 None:intergenic 45.0%
TCATGGTCCTGCTCATACAA+AGG + chr2_1:9530770-9530789 Msa0193720:CDS 45.0%
! CATCTAGCCTTTGTATGAGC+AGG - chr2_1:9530780-9530799 None:intergenic 45.0%
CTGCTCATACAAAGGCTAGA+TGG + chr2_1:9530778-9530797 Msa0193720:CDS 45.0%
CATATGCATGCACATGTCTC+AGG + chr2_1:9530853-9530872 Msa0193720:intron 45.0%
! GTTCTAAACTTGGTCCACCA+TGG - chr2_1:9531294-9531313 None:intergenic 45.0%
AAAAACCGGTGGAGGTTGAA+AGG - chr2_1:9531357-9531376 None:intergenic 45.0%
!!! TTATTTTTTTCATTATATAA+TGG + chr2_1:9527712-9527731 Msa0193720:intron 5.0%
! CCATGAAGTTGGTCCATTGG+TGG - chr2_1:9527603-9527622 None:intergenic 50.0%
CCACCAATGGACCAACTTCA+TGG + chr2_1:9527600-9527619 Msa0193720:CDS 50.0%
! GGTTACCAACAGTGATGGGA+GGG + chr2_1:9528199-9528218 Msa0193720:CDS 50.0%
TAAGACCCTCCCATCACTGT+TGG - chr2_1:9528207-9528226 None:intergenic 50.0%
GAGTTCGGCCAATTGTGTCT+TGG + chr2_1:9528478-9528497 Msa0193720:intron 50.0%
TGCACCTTGAACTGCTCTCA+TGG - chr2_1:9528859-9528878 None:intergenic 50.0%
ATTTAACCGAGGGTTCCCTG+TGG + chr2_1:9529080-9529099 Msa0193720:CDS 50.0%
GCCCTACATTCTCTCTGTCA+TGG - chr2_1:9530290-9530309 None:intergenic 50.0%
!! TGTGTCCTGTTTGGCCTTGT+TGG + chr2_1:9530537-9530556 Msa0193720:CDS 50.0%
ACTCACCAACAAGGCCAAAC+AGG - chr2_1:9530545-9530564 None:intergenic 50.0%
GGCTCAAACACAGTCAAAGG+TGG - chr2_1:9530580-9530599 None:intergenic 50.0%
GGGCAACACCGGTAATAAAG+AGG - chr2_1:9530695-9530714 None:intergenic 50.0%
!!! TACCGGTGTTGCCCTTTTCT+TGG + chr2_1:9530701-9530720 Msa0193720:CDS 50.0%
!!! ACCGGTGTTGCCCTTTTCTT+GGG + chr2_1:9530702-9530721 Msa0193720:CDS 50.0%
TTCACTTCCAAGGCCCTTCA+TGG + chr2_1:9530753-9530772 Msa0193720:CDS 50.0%
ATGCATGCACATGTCTCAGG+TGG + chr2_1:9530856-9530875 Msa0193720:intron 50.0%
CCATGGCATTCCCCTATCTT+TGG - chr2_1:9531277-9531296 None:intergenic 50.0%
CCAAAGATAGGGGAATGCCA+TGG + chr2_1:9531274-9531293 Msa0193720:CDS 50.0%
AAGATAGGGGAATGCCATGG+TGG + chr2_1:9531277-9531296 Msa0193720:CDS 50.0%
AAGATGGAGGGAAAAACCGG+TGG - chr2_1:9531368-9531387 None:intergenic 50.0%
! GAAGTTGGTCCATTGGTGGG+TGG - chr2_1:9527599-9527618 None:intergenic 55.0%
! CGGTTACCAACAGTGATGGG+AGG + chr2_1:9528198-9528217 Msa0193720:CDS 55.0%
! TGGCATGATGGCCGCTGTTT+TGG + chr2_1:9529763-9529782 Msa0193720:CDS 55.0%
GCCCAAGAAAAGGGCAACAC+CGG - chr2_1:9530706-9530725 None:intergenic 55.0%
CCGGTGGAGGTTGAAAGGAA+GGG - chr2_1:9531352-9531371 None:intergenic 55.0%
CCCTTCCTTTCAACCTCCAC+CGG + chr2_1:9531349-9531368 Msa0193720:CDS 55.0%
ACCGGTGGAGGTTGAAAGGA+AGG - chr2_1:9531353-9531372 None:intergenic 55.0%
ATGGAGGGAAAAACCGGTGG+AGG - chr2_1:9531365-9531384 None:intergenic 55.0%
GTCGTACCACAGGGAACCCT+CGG - chr2_1:9529089-9529108 None:intergenic 60.0%
GAGCATACACAGCTGCGTCC+CGG + chr2_1:9530079-9530098 Msa0193720:CDS 60.0%
!! CGGTGTTGCACTTGCTAGCC+GGG - chr2_1:9530100-9530119 None:intergenic 60.0%
!! GCGGTGTTGCACTTGCTAGC+CGG - chr2_1:9530101-9530120 None:intergenic 60.0%
CTCAGAACATGAGGAGGCGG+CGG - chr2_1:9530120-9530139 None:intergenic 60.0%
CGGCTCAGAACATGAGGAGG+CGG - chr2_1:9530123-9530142 None:intergenic 60.0%
! CCTCCTCATGTTCTGAGCCG+CGG + chr2_1:9530123-9530142 Msa0193720:CDS 60.0%
ACACCGCGGCTCAGAACATG+AGG - chr2_1:9530129-9530148 None:intergenic 60.0%
! CATGTTCTGAGCCGCGGTGT+TGG + chr2_1:9530129-9530148 Msa0193720:CDS 60.0%
!! GGTGTTGGCTGGCAGGGAAT+TGG + chr2_1:9530144-9530163 Msa0193720:CDS 60.0%
AGCAGGACCATGAAGGGCCT+TGG - chr2_1:9530763-9530782 None:intergenic 60.0%
CCGCGGCTCAGAACATGAGG+AGG - chr2_1:9530126-9530145 None:intergenic 65.0%
!! TTCTGAGCCGCGGTGTTGGC+TGG + chr2_1:9530133-9530152 Msa0193720:CDS 65.0%
TTCCCTGCCAGCCAACACCG+CGG - chr2_1:9530143-9530162 None:intergenic 65.0%
!! AGCCGCGGTGTTGGCTGGCA+GGG + chr2_1:9530138-9530157 Msa0193720:CDS 70.0%
!! GAGCCGCGGTGTTGGCTGGC+AGG + chr2_1:9530137-9530156 Msa0193720:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 9527343 9531710 9527343 ID=Msa0193720;Name=Msa0193720
chr2_1 mRNA 9527343 9531710 9527343 ID=Msa0193720-mRNA-1;Parent=Msa0193720;Name=Msa0193720-mRNA-1;_AED=0.14;_eAED=0.14;_QI=221|1|1|1|1|1|13|321|525
chr2_1 exon 9527343 9527657 9527343 ID=Msa0193720-mRNA-1:exon:4373;Parent=Msa0193720-mRNA-1
chr2_1 exon 9527851 9527948 9527851 ID=Msa0193720-mRNA-1:exon:4374;Parent=Msa0193720-mRNA-1
chr2_1 exon 9528120 9528296 9528120 ID=Msa0193720-mRNA-1:exon:4375;Parent=Msa0193720-mRNA-1
chr2_1 exon 9528843 9528943 9528843 ID=Msa0193720-mRNA-1:exon:4376;Parent=Msa0193720-mRNA-1
chr2_1 exon 9529026 9529101 9529026 ID=Msa0193720-mRNA-1:exon:4377;Parent=Msa0193720-mRNA-1
chr2_1 exon 9529201 9529260 9529201 ID=Msa0193720-mRNA-1:exon:4378;Parent=Msa0193720-mRNA-1
chr2_1 exon 9529376 9529560 9529376 ID=Msa0193720-mRNA-1:exon:4379;Parent=Msa0193720-mRNA-1
chr2_1 exon 9529703 9529799 9529703 ID=Msa0193720-mRNA-1:exon:4380;Parent=Msa0193720-mRNA-1
chr2_1 exon 9530072 9530217 9530072 ID=Msa0193720-mRNA-1:exon:4381;Parent=Msa0193720-mRNA-1
chr2_1 exon 9530296 9530387 9530296 ID=Msa0193720-mRNA-1:exon:4382;Parent=Msa0193720-mRNA-1
chr2_1 exon 9530481 9530558 9530481 ID=Msa0193720-mRNA-1:exon:4383;Parent=Msa0193720-mRNA-1
chr2_1 exon 9530640 9530800 9530640 ID=Msa0193720-mRNA-1:exon:4384;Parent=Msa0193720-mRNA-1
chr2_1 exon 9531177 9531710 9531177 ID=Msa0193720-mRNA-1:exon:4385;Parent=Msa0193720-mRNA-1
chr2_1 five_prime_UTR 9527343 9527563 9527343 ID=Msa0193720-mRNA-1:five_prime_utr;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9527564 9527657 9527564 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9527851 9527948 9527851 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9528120 9528296 9528120 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9528843 9528943 9528843 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9529026 9529101 9529026 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9529201 9529260 9529201 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9529376 9529560 9529376 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9529703 9529799 9529703 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9530072 9530217 9530072 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9530296 9530387 9530296 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9530481 9530558 9530481 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9530640 9530800 9530640 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 CDS 9531177 9531389 9531177 ID=Msa0193720-mRNA-1:cds;Parent=Msa0193720-mRNA-1
chr2_1 three_prime_UTR 9531390 9531710 9531390 ID=Msa0193720-mRNA-1:three_prime_utr;Parent=Msa0193720-mRNA-1
Gene Sequence

>Msa0193720

ATGGAAGCTCCAAAGCAAGAAGAAATATTATACCACCCACCAATGGACCAACTTCATGGCATAGAGTACTGCATAGATGCAAACCCTTCTTGGGTGGAGTCAATTATTCTGGGTTTTCAGCATTACATTTTGGCTTTAGGAACTGCAGTTATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAACTGATGGTGATAAAGTGAGAGTGGTACAGATTCTGCTTTTTGTAGAAGGAATTAATACACTCTTTCAGACACTCTTTGGAACTCGGTTACCAACAGTGATGGGAGGGTCTTATGCATTTATGGTCCCAATTATATCCATTATTCATGACTCCAAATTGGCCTCCATAGAAGACCCACATTTGAGATTTGTTAAAACCATGAGAGCAGTTCAAGGTGCAACGATAGCAGCATCAAGCATACAGATTATTTTGGGCTTTAGTCAATTATGGGCCATTTGTTCTAGGTTTTTCAGTCCACTTGGAATGGTTCCAGTAATTGCATTATCTGGTTTTGGCTTATTTAACCGAGGGTTCCCTGTGGTTGGACATTGTGTTGAAATTGGAATTCCCATGTTAATTCTGTTTGTAGCATTCTCTCAGTATTTGAAAAACTTTAATGCAAGACAACTACCAATACTAGAGAGATTTGCTTTGCTTGTATCAACCACAATGATATGGGCCTATGCACATCTCTTAACAACAAGTGGAACATACAAACTCAGACCAGAATTAACACAATATAATTGCAGGACAGACAAATCCAACCTCATTTCTTCTGCTCCATGGATGAAGATTCCATACCCTTTTGAGTGGGGTTTTCCTACATTTGATGTTGGTCATGCTTTTGGCATGATGGCCGCTGTTTTGGTCTCCTTAATTGAGTCAACTGGAGCATACACAGCTGCGTCCCGGCTAGCAAGTGCAACACCGCCGCCTCCTCATGTTCTGAGCCGCGGTGTTGGCTGGCAGGGAATTGGAATCTTGTTGAATGGACTATTTGGAACACTGACTGGTTCATCAGTTTCTGTAGAGAATGTAGGGCTACTAGGAAGTACTCGTGTTGGTAGTCGAAGAGTCATTCAAATTTCAGCAGGCTTTATGATATTCTTCTCAATGCTAGGAAAATTTGGTGCTTTTTTTGCATCAATACCCTTCCCTATTTTTGCTGCTATGTACTGTGTCCTGTTTGGCCTTGTTGCTTCTGTGGGGCTATCATTTTTGCAGTTTACTAACATGAACTCAATGAGGAGCCTCTTTATTACCGGTGTTGCCCTTTTCTTGGGCTTATCTATTCCGGAGTATTTCAGAGAATTCACTTCCAAGGCCCTTCATGGTCCTGCTCATACAAAGGCTAGATGGTTCAATGATTTTCTCAATACTATCTTCTTCTCATCCTCAACTGTTGCATTCATTGTTGCTGTGTTCTTGGACAACACTCTTGATTACAAGAATAGCTCCAAAGATAGGGGAATGCCATGGTGGACCAAGTTTAGAACATTTCATGGAGATACCAGAAATGAAGAGTTCTACACCCTTCCTTTCAACCTCCACCGGTTTTTCCCTCCATCTTAA

Protein sequence

>Msa0193720

MEAPKQEEILYHPPMDQLHGIEYCIDANPSWVESIILGFQHYILALGTAVMIPSFLVPLMGGTDGDKVRVVQILLFVEGINTLFQTLFGTRLPTVMGGSYAFMVPIISIIHDSKLASIEDPHLRFVKTMRAVQGATIAASSIQIILGFSQLWAICSRFFSPLGMVPVIALSGFGLFNRGFPVVGHCVEIGIPMLILFVAFSQYLKNFNARQLPILERFALLVSTTMIWAYAHLLTTSGTYKLRPELTQYNCRTDKSNLISSAPWMKIPYPFEWGFPTFDVGHAFGMMAAVLVSLIESTGAYTAASRLASATPPPPHVLSRGVGWQGIGILLNGLFGTLTGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFPIFAAMYCVLFGLVASVGLSFLQFTNMNSMRSLFITGVALFLGLSIPEYFREFTSKALHGPAHTKARWFNDFLNTIFFSSSTVAFIVAVFLDNTLDYKNSSKDRGMPWWTKFRTFHGDTRNEEFYTLPFNLHRFFPPS*