Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196350 | XP_013462766.1 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 1.46e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196350 | sp|Q9M7T0|PRX2F_ARATH | 78.736 | 174 | 37 | 0 | 26 | 199 | 28 | 201 | 4.98e-100 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196350 | B7FGM0 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 6.99e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196350 | Msa1278120 | 0.800139 | 1.657770e-48 | -8.615850e-47 |
| Msa0196350 | Msa1317380 | 0.808510 | 2.989931e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196350 | MtrunA17_Chr2g0287981 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 1.35e-146 | 405 |
| Msa0196350 | MtrunA17_Chr7g0265731 | 40.876 | 137 | 78 | 2 | 62 | 196 | 79 | 214 | 3.00e-30 | 110 |
| Msa0196350 | MtrunA17_Chr6g0486051 | 38.849 | 139 | 68 | 3 | 58 | 196 | 22 | 143 | 5.99e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196350 | AT3G06050.1 | 78.736 | 174 | 37 | 0 | 26 | 199 | 28 | 201 | 5.06e-101 | 290 |
| Msa0196350 | AT3G06050.2 | 75.229 | 109 | 27 | 0 | 26 | 134 | 28 | 136 | 5.19e-58 | 181 |
| Msa0196350 | AT1G60740.1 | 38.621 | 145 | 86 | 2 | 52 | 196 | 18 | 159 | 1.62e-29 | 107 |
| Msa0196350 | AT1G65980.1 | 38.621 | 145 | 86 | 2 | 52 | 196 | 18 | 159 | 1.84e-29 | 107 |
| Msa0196350 | AT1G65970.1 | 37.931 | 145 | 87 | 2 | 52 | 196 | 18 | 159 | 2.25e-28 | 104 |
| Msa0196350 | AT3G52960.1 | 36.585 | 123 | 76 | 1 | 62 | 182 | 96 | 218 | 2.01e-24 | 96.3 |
| Msa0196350 | AT1G65990.1 | 31.967 | 122 | 79 | 1 | 59 | 180 | 23 | 140 | 2.27e-14 | 71.2 |
| Msa0196350 | AT1G65980.2 | 42.857 | 63 | 34 | 1 | 52 | 114 | 18 | 78 | 3.20e-12 | 60.5 |
Find 56 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTATCAATGACATCTTTA+AGG | 0.095553 | 2_1:+13528550 | Msa0196350:CDS |
| CATCCCAATTACGAGCTTTC+TGG | 0.124781 | 2_1:-13528499 | None:intergenic |
| CCATCTGATGTCAAGGTTTC+TGG | 0.141794 | 2_1:+13531673 | Msa0196350:CDS |
| TTCTGGTGCAGAAACCATTT+TGG | 0.209676 | 2_1:+13531690 | Msa0196350:CDS |
| CTCTCCAGAAAGCTCGTAAT+TGG | 0.220729 | 2_1:+13528495 | Msa0196350:CDS |
| GATAGGAGTGGTAGAGAATT+TGG | 0.240074 | 2_1:-13528534 | None:intergenic |
| GATAAAACTTACAGCATCTT+TGG | 0.247037 | 2_1:-13529535 | None:intergenic |
| GGATAATATTGAGAAGTTTA+AGG | 0.249698 | 2_1:+13529434 | Msa0196350:CDS |
| ACTTCAAATTTGTCCCAAAA+TGG | 0.256499 | 2_1:-13531704 | None:intergenic |
| CTTCAGTTCTTCATGGGATC+AGG | 0.313967 | 2_1:+13528417 | Msa0196350:CDS |
| AGATGTATGAAAGGAATTTA+TGG | 0.315678 | 2_1:-13528281 | None:intergenic |
| GATAAGAAAGTTGTCATCTT+TGG | 0.361151 | 2_1:+13528683 | Msa0196350:CDS |
| TTGAGAAGTTTAAGGCTAAA+GGG | 0.369487 | 2_1:+13529442 | Msa0196350:CDS |
| GATCTCTCTGGTGCTTTGCT+TGG | 0.372864 | 2_1:+13531309 | Msa0196350:CDS |
| AACTGAAGAAACTGATTTCA+AGG | 0.375841 | 2_1:-13528402 | None:intergenic |
| TCAGTTTCTTCAGTTCTTCA+TGG | 0.390563 | 2_1:+13528410 | Msa0196350:CDS |
| ATTGAGAAGTTTAAGGCTAA+AGG | 0.395956 | 2_1:+13529441 | Msa0196350:CDS |
| TCTTACGCAAAGGTTGCAAC+TGG | 0.410870 | 2_1:+13528440 | Msa0196350:CDS |
| TTCTCAATATTATCCTTGTA+AGG | 0.411089 | 2_1:-13529426 | None:intergenic |
| ATACCAAACATACATCTTGC+AGG | 0.414284 | 2_1:-13531948 | None:intergenic |
| AAATATTCTATCAGCTCAGC+TGG | 0.424038 | 2_1:-13531812 | None:intergenic |
| TGGTCAGCATATGTGGTAGA+TGG | 0.435531 | 2_1:+13531619 | Msa0196350:CDS |
| TAATATATACCTTTCAGATC+GGG | 0.458372 | 2_1:-13531334 | None:intergenic |
| CAGTTTCTTCAGTTCTTCAT+GGG | 0.461001 | 2_1:+13528411 | Msa0196350:CDS |
| TCTCCAGAAAGCTCGTAATT+GGG | 0.463629 | 2_1:+13528496 | Msa0196350:CDS |
| TGTGGTAGATGGAAAGGTTA+AGG | 0.463992 | 2_1:+13531630 | Msa0196350:CDS |
| GACCCTGCAAGATGTATGTT+TGG | 0.482250 | 2_1:+13531945 | Msa0196350:three_prime_UTR |
| GCCCACGCATTCATAGTGTA+TGG | 0.489766 | 2_1:-13529498 | None:intergenic |
| CAAACATGTTCCTCCTTACA+AGG | 0.489949 | 2_1:+13529413 | Msa0196350:CDS |
| CGGGAGCTTCCACAAAAGCT+TGG | 0.499307 | 2_1:+13531275 | Msa0196350:CDS |
| GAATTAACTACTGATCTCTC+TGG | 0.503738 | 2_1:+13531297 | Msa0196350:CDS |
| TCAGCTCAGCTGGAAACATC+AGG | 0.505036 | 2_1:-13531802 | None:intergenic |
| TGAGAAGTTTAAGGCTAAAG+GGG | 0.516671 | 2_1:+13529443 | Msa0196350:CDS |
| CCAGAAACCTTGACATCAGA+TGG | 0.516805 | 2_1:-13531673 | None:intergenic |
| ACCTTAAAGATGTCATTGAT+AGG | 0.525640 | 2_1:-13528551 | None:intergenic |
| AAAGCTCGTAATTGGGATGA+AGG | 0.533139 | 2_1:+13528503 | Msa0196350:CDS |
| ATCTCTTAGGGTGCATACAC+GGG | 0.534928 | 2_1:+13529378 | Msa0196350:intron |
| AGCTTTCTGGAGAGAAACAT+TGG | 0.544296 | 2_1:-13528486 | None:intergenic |
| TATCTCTTAGGGTGCATACA+CGG | 0.545181 | 2_1:+13529377 | Msa0196350:intron |
| ATAATATATACCTTTCAGAT+CGG | 0.547768 | 2_1:-13531335 | None:intergenic |
| GTGTAGATGGTCAGCATATG+TGG | 0.555542 | 2_1:+13531612 | Msa0196350:intron |
| AGCATATGTGGTAGATGGAA+AGG | 0.556118 | 2_1:+13531624 | Msa0196350:CDS |
| AGAGAACACAGATGTATGAA+AGG | 0.556140 | 2_1:-13528290 | None:intergenic |
| ATCCATACACTATGAATGCG+TGG | 0.571697 | 2_1:+13529496 | Msa0196350:CDS |
| TACCAAACATACATCTTGCA+GGG | 0.596571 | 2_1:-13531947 | None:intergenic |
| TGGGATCAGGTCTTACGCAA+AGG | 0.604369 | 2_1:+13528430 | Msa0196350:CDS |
| GTCATTGCTTAGATTGTACG+AGG | 0.615162 | 2_1:-13528344 | None:intergenic |
| TCAATATTATCCTTGTAAGG+AGG | 0.618181 | 2_1:-13529423 | None:intergenic |
| AGAAGCTCCATCTGATGTCA+AGG | 0.618856 | 2_1:+13531666 | Msa0196350:CDS |
| AGGTTGTTGAAGAACGAGCA+CGG | 0.623855 | 2_1:-13528382 | None:intergenic |
| CTTACGCAAAGGTTGCAACT+GGG | 0.624108 | 2_1:+13528441 | Msa0196350:CDS |
| TCGAATGTGTGAGAAGAGTG+AGG | 0.624817 | 2_1:-13528313 | None:intergenic |
| ACGAGCACGGTTCATTACAA+AGG | 0.631640 | 2_1:-13528369 | None:intergenic |
| AAAGATGTCATTGATAGGAG+TGG | 0.638393 | 2_1:-13528546 | None:intergenic |
| TGCTTGGAACCCGATCTGAA+AGG | 0.651715 | 2_1:+13531325 | Msa0196350:CDS |
| TCCATACACTATGAATGCGT+GGG | 0.665261 | 2_1:+13529497 | Msa0196350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAACAAAAATAATAAAA+GGG | - | chr2_1:13528621-13528640 | None:intergenic | 10.0% |
| !! | AATTGAACAAAAATAATAAA+AGG | - | chr2_1:13528622-13528641 | None:intergenic | 10.0% |
| !!! | TATTTTTGTTCAATTATTAA+TGG | + | chr2_1:13528627-13528646 | Msa0196350:intron | 10.0% |
| !!! | ATTTTTGTTCAATTATTAAT+GGG | + | chr2_1:13528628-13528647 | Msa0196350:intron | 10.0% |
| !! | TACAAAATATTATGAAATAG+CGG | - | chr2_1:13530748-13530767 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTTCTTTCTATT+TGG | + | chr2_1:13531192-13531211 | Msa0196350:intron | 15.0% |
| !!! | TGTTTTTTTTCTTTCTATTT+GGG | + | chr2_1:13531193-13531212 | Msa0196350:intron | 15.0% |
| !! | TAATATCATAAACCATTATT+TGG | - | chr2_1:13531535-13531554 | None:intergenic | 15.0% |
| !! | AATAGAGAAAAAAATGAAGT+GGG | - | chr2_1:13528580-13528599 | None:intergenic | 20.0% |
| !! | AAATAGAGAAAAAAATGAAG+TGG | - | chr2_1:13528581-13528600 | None:intergenic | 20.0% |
| !!! | ATAAGCAAAACCTTTAATTT+AGG | - | chr2_1:13529044-13529063 | None:intergenic | 20.0% |
| !! | ACTTATAGCTTATATGAAAA+TGG | - | chr2_1:13529121-13529140 | None:intergenic | 20.0% |
| !! | TATGAAAACAACTTATAACA+TGG | - | chr2_1:13529207-13529226 | None:intergenic | 20.0% |
| !!! | TCTTTTCTGACTATTATTAA+AGG | + | chr2_1:13529565-13529584 | Msa0196350:intron | 20.0% |
| !!! | AATCTAATTTCTGAAAACAT+TGG | + | chr2_1:13529818-13529837 | Msa0196350:intron | 20.0% |
| !!! | TTTTTTAAAGTAAGACTGAT+TGG | + | chr2_1:13529918-13529937 | Msa0196350:intron | 20.0% |
| !!! | TTTTTAAAGTAAGACTGATT+GGG | + | chr2_1:13529919-13529938 | Msa0196350:intron | 20.0% |
| !! | TGCTTAATGTTATTAAATAG+CGG | - | chr2_1:13530828-13530847 | None:intergenic | 20.0% |
| !! | ATCTGGAAAAAGAAAAAAAA+GGG | - | chr2_1:13531234-13531253 | None:intergenic | 20.0% |
| !! | AATCTGGAAAAAGAAAAAAA+AGG | - | chr2_1:13531235-13531254 | None:intergenic | 20.0% |
| !! | ATAATATATACCTTTCAGAT+CGG | - | chr2_1:13531338-13531357 | None:intergenic | 20.0% |
| !!! | TATTTGTTAAGATTTTCTGT+TGG | + | chr2_1:13531830-13531849 | Msa0196350:three_prime_UTR | 20.0% |
| ! | AGATGTATGAAAGGAATTTA+TGG | - | chr2_1:13528284-13528303 | None:intergenic | 25.0% |
| ! | ATAGAGAAAAAAATGAAGTG+GGG | - | chr2_1:13528579-13528598 | None:intergenic | 25.0% |
| ! | AATTGTCAAGTTAACTTACT+GGG | - | chr2_1:13528712-13528731 | None:intergenic | 25.0% |
| ! | AAATTGTCAAGTTAACTTAC+TGG | - | chr2_1:13528713-13528732 | None:intergenic | 25.0% |
| ! | CGATAAGAAAAGATGAAATA+AGG | + | chr2_1:13528908-13528927 | Msa0196350:intron | 25.0% |
| !!! | GTTATTTTCATAAGCTATCT+TGG | + | chr2_1:13529139-13529158 | Msa0196350:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr2_1:13529174-13529193 | Msa0196350:intron | 25.0% |
| ! | TCAAATAAGTCAATCCAAAT+AGG | + | chr2_1:13529272-13529291 | Msa0196350:intron | 25.0% |
| ! | CTTTGTAATAATGACCTATT+TGG | - | chr2_1:13529289-13529308 | None:intergenic | 25.0% |
| ! | TCATGTTATGATTATCTCTT+AGG | + | chr2_1:13529365-13529384 | Msa0196350:intron | 25.0% |
| ! | CATGTTATGATTATCTCTTA+GGG | + | chr2_1:13529366-13529385 | Msa0196350:intron | 25.0% |
| ! | TTCTCAATATTATCCTTGTA+AGG | - | chr2_1:13529429-13529448 | None:intergenic | 25.0% |
| ! | GGATAATATTGAGAAGTTTA+AGG | + | chr2_1:13529434-13529453 | Msa0196350:CDS | 25.0% |
| !!! | AGGCTTTATTTTCTTTTTGA+TGG | + | chr2_1:13529585-13529604 | Msa0196350:intron | 25.0% |
| ! | TTCATGATAAGTATTACAAC+CGG | - | chr2_1:13529699-13529718 | None:intergenic | 25.0% |
| !!! | TTTTAAAGTAAGACTGATTG+GGG | + | chr2_1:13529920-13529939 | Msa0196350:intron | 25.0% |
| ! | AAAATAAATGGGAATAGGTT+TGG | - | chr2_1:13530001-13530020 | None:intergenic | 25.0% |
| !! | AAACCTATTCCCATTTATTT+TGG | + | chr2_1:13530000-13530019 | Msa0196350:intron | 25.0% |
| ! | AAGTCACAAAAGAATAATGA+AGG | - | chr2_1:13530212-13530231 | None:intergenic | 25.0% |
| !!! | ATTTCTAGCTTCACAATTAA+AGG | + | chr2_1:13530304-13530323 | Msa0196350:intron | 25.0% |
| ! | CTAAAATTGAGTTTACAGTT+AGG | - | chr2_1:13530336-13530355 | None:intergenic | 25.0% |
| !!! | AAACTCAATTTTAGTTGAGT+TGG | + | chr2_1:13530342-13530361 | Msa0196350:intron | 25.0% |
| !!! | AACTCAATTTTAGTTGAGTT+GGG | + | chr2_1:13530343-13530362 | Msa0196350:intron | 25.0% |
| !! | ATATTATGAAATAGCGGAAT+TGG | - | chr2_1:13530742-13530761 | None:intergenic | 25.0% |
| ! | TTATGATATCTTCAATCTCT+TGG | + | chr2_1:13530982-13531001 | Msa0196350:intron | 25.0% |
| ! | TATTTGCTTGCTTATGTTAA+TGG | + | chr2_1:13531160-13531179 | Msa0196350:intron | 25.0% |
| !! | TTTTTCCAGATTGAGTTTTA+TGG | + | chr2_1:13531243-13531262 | Msa0196350:intron | 25.0% |
| !!! | TTTTCCAGATTGAGTTTTAT+GGG | + | chr2_1:13531244-13531263 | Msa0196350:intron | 25.0% |
| ! | TAATATATACCTTTCAGATC+GGG | - | chr2_1:13531337-13531356 | None:intergenic | 25.0% |
| !!! | TAAAAGAGTAACTGTTGTTT+TGG | + | chr2_1:13531590-13531609 | Msa0196350:intron | 25.0% |
| !!! | ACTGTATTTCCTTCATTTTT+TGG | + | chr2_1:13531870-13531889 | Msa0196350:three_prime_UTR | 25.0% |
| ! | AACTGAAGAAACTGATTTCA+AGG | - | chr2_1:13528405-13528424 | None:intergenic | 30.0% |
| TCCTATCAATGACATCTTTA+AGG | + | chr2_1:13528550-13528569 | Msa0196350:CDS | 30.0% | |
| ACCTTAAAGATGTCATTGAT+AGG | - | chr2_1:13528554-13528573 | None:intergenic | 30.0% | |
| TTTCTTCAATTTGACGTTGT+AGG | + | chr2_1:13528661-13528680 | Msa0196350:intron | 30.0% | |
| GATAAGAAAGTTGTCATCTT+TGG | + | chr2_1:13528683-13528702 | Msa0196350:CDS | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr2_1:13529017-13529036 | Msa0196350:intron | 30.0% | |
| TCACATAAGCACTTATGTAT+AGG | + | chr2_1:13529063-13529082 | Msa0196350:intron | 30.0% | |
| ACTTTGTCAAACAATTTCAC+AGG | + | chr2_1:13529228-13529247 | Msa0196350:intron | 30.0% | |
| AATTTCACAGGTGTTTATGT+CGG | + | chr2_1:13529240-13529259 | Msa0196350:intron | 30.0% | |
| GAGATAATCATAACATGAAG+AGG | - | chr2_1:13529363-13529382 | None:intergenic | 30.0% | |
| TCAATATTATCCTTGTAAGG+AGG | - | chr2_1:13529426-13529445 | None:intergenic | 30.0% | |
| ! | ATTGAGAAGTTTAAGGCTAA+AGG | + | chr2_1:13529441-13529460 | Msa0196350:CDS | 30.0% |
| ! | TTGAGAAGTTTAAGGCTAAA+GGG | + | chr2_1:13529442-13529461 | Msa0196350:CDS | 30.0% |
| GATAAAACTTACAGCATCTT+TGG | - | chr2_1:13529538-13529557 | None:intergenic | 30.0% | |
| AATAACTAATGCAAACACAG+AGG | - | chr2_1:13529624-13529643 | None:intergenic | 30.0% | |
| TAGTTCAAATTGTTCAGCTT+CGG | + | chr2_1:13529773-13529792 | Msa0196350:intron | 30.0% | |
| ATTAAGCTTCAAGAAAGGAT+CGG | - | chr2_1:13530067-13530086 | None:intergenic | 30.0% | |
| ! | GTTTTTGCAAGTCAAGTTTA+AGG | + | chr2_1:13530442-13530461 | Msa0196350:intron | 30.0% |
| ATTTCACCAGAAGAAATACA+AGG | + | chr2_1:13530545-13530564 | Msa0196350:intron | 30.0% | |
| CAATTTCCTTGTATTTCTTC+TGG | - | chr2_1:13530554-13530573 | None:intergenic | 30.0% | |
| !! | TTTCCAGATTGAGTTTTATG+GGG | + | chr2_1:13531245-13531264 | Msa0196350:intron | 30.0% |
| ! | TAGTTAATTCCAAGCTTTTG+TGG | - | chr2_1:13531287-13531306 | None:intergenic | 30.0% |
| TCCTTCCTTAAAGCTAAAAT+TGG | + | chr2_1:13531364-13531383 | Msa0196350:intron | 30.0% | |
| !!! | TCCAATTTTAGCTTTAAGGA+AGG | - | chr2_1:13531368-13531387 | None:intergenic | 30.0% |
| !!! | TGAGTCCAATTTTAGCTTTA+AGG | - | chr2_1:13531372-13531391 | None:intergenic | 30.0% |
| AAAAAGAACTAATGCAGTGA+AGG | + | chr2_1:13531504-13531523 | Msa0196350:intron | 30.0% | |
| ACTTCAAATTTGTCCCAAAA+TGG | - | chr2_1:13531707-13531726 | None:intergenic | 30.0% | |
| AAGTAGAGTCCAAAAAATGA+AGG | - | chr2_1:13531882-13531901 | None:intergenic | 30.0% | |
| AGAGAACACAGATGTATGAA+AGG | - | chr2_1:13528293-13528312 | None:intergenic | 35.0% | |
| TCAGTTTCTTCAGTTCTTCA+TGG | + | chr2_1:13528410-13528429 | Msa0196350:CDS | 35.0% | |
| CAGTTTCTTCAGTTCTTCAT+GGG | + | chr2_1:13528411-13528430 | Msa0196350:CDS | 35.0% | |
| AAAGATGTCATTGATAGGAG+TGG | - | chr2_1:13528549-13528568 | None:intergenic | 35.0% | |
| ATTAAGCTGTTGACACAAAC+AGG | - | chr2_1:13528850-13528869 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGACAAATT+GGG | - | chr2_1:13528981-13529000 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGACAAAT+TGG | - | chr2_1:13528982-13529001 | None:intergenic | 35.0% | |
| ATTTGTCTCACAAGTGCTTA+TGG | + | chr2_1:13528982-13529001 | Msa0196350:intron | 35.0% | |
| ! | CCTTTAATTTAGGACCTGTT+TGG | - | chr2_1:13529034-13529053 | None:intergenic | 35.0% |
| CCAAACAGGTCCTAAATTAA+AGG | + | chr2_1:13529031-13529050 | Msa0196350:intron | 35.0% | |
| ! | TGAGAAGTTTAAGGCTAAAG+GGG | + | chr2_1:13529443-13529462 | Msa0196350:CDS | 35.0% |
| TACATGTCCTTCGTGATTTA+TGG | + | chr2_1:13529726-13529745 | Msa0196350:intron | 35.0% | |
| ACATGTCCTTCGTGATTTAT+GGG | + | chr2_1:13529727-13529746 | Msa0196350:intron | 35.0% | |
| ! | TTCTGAAAACATTGGAACAG+TGG | + | chr2_1:13529826-13529845 | Msa0196350:intron | 35.0% |
| TCTGAAAACATTGGAACAGT+GGG | + | chr2_1:13529827-13529846 | Msa0196350:intron | 35.0% | |
| !! | TTTGGAGGTATCGTGAATAA+TGG | - | chr2_1:13529983-13530002 | None:intergenic | 35.0% |
| ATAAATGGGAATAGGTTTGG+AGG | - | chr2_1:13529998-13530017 | None:intergenic | 35.0% | |
| GGACCAAAATAAATGGGAAT+AGG | - | chr2_1:13530006-13530025 | None:intergenic | 35.0% | |
| CTGGTAGGACCAAAATAAAT+GGG | - | chr2_1:13530012-13530031 | None:intergenic | 35.0% | |
| TTAAGCTTCAAGAAAGGATC+GGG | - | chr2_1:13530066-13530085 | None:intergenic | 35.0% | |
| TCCTTTCTTGAAGCTTAATG+TGG | + | chr2_1:13530068-13530087 | Msa0196350:intron | 35.0% | |
| TCCACATTAAGCTTCAAGAA+AGG | - | chr2_1:13530072-13530091 | None:intergenic | 35.0% | |
| AAATGCGTAATAAGCTCAGA+GGG | - | chr2_1:13530153-13530172 | None:intergenic | 35.0% | |
| CATTTGCGCTCTAATGTTAT+GGG | + | chr2_1:13530168-13530187 | Msa0196350:intron | 35.0% | |
| ATTTGCGCTCTAATGTTATG+GGG | + | chr2_1:13530169-13530188 | Msa0196350:intron | 35.0% | |
| AGAATAATGAAGGAAACGCA+GGG | - | chr2_1:13530202-13530221 | None:intergenic | 35.0% | |
| AAGAATAATGAAGGAAACGC+AGG | - | chr2_1:13530203-13530222 | None:intergenic | 35.0% | |
| AAGGATAATCAGAACTCTGA+AGG | + | chr2_1:13530461-13530480 | Msa0196350:intron | 35.0% | |
| AGGATAATCAGAACTCTGAA+GGG | + | chr2_1:13530462-13530481 | Msa0196350:intron | 35.0% | |
| GAGACTTTGTGTTTCACAAA+GGG | + | chr2_1:13530488-13530507 | Msa0196350:intron | 35.0% | |
| CTAGCACTCTTTATAAGAAG+AGG | + | chr2_1:13530958-13530977 | Msa0196350:intron | 35.0% | |
| !! | TTCGCATGGATTAGAAACTA+CGG | - | chr2_1:13531012-13531031 | None:intergenic | 35.0% |
| ! | TTACAAGCTTGATTTTCGCA+TGG | - | chr2_1:13531026-13531045 | None:intergenic | 35.0% |
| ! | AATCAATTCCACGATGGATT+AGG | + | chr2_1:13531104-13531123 | Msa0196350:intron | 35.0% |
| TTTCAAATCCTAATCCATCG+TGG | - | chr2_1:13531115-13531134 | None:intergenic | 35.0% | |
| GAATTAACTACTGATCTCTC+TGG | + | chr2_1:13531297-13531316 | Msa0196350:CDS | 35.0% | |
| AACTAGATCAAATGCCAAAG+CGG | + | chr2_1:13531449-13531468 | Msa0196350:intron | 35.0% | |
| GTGAAGGAATCACCAAATAA+TGG | + | chr2_1:13531520-13531539 | Msa0196350:intron | 35.0% | |
| !!! | AACTGTTGTTTTGGTGTAGA+TGG | + | chr2_1:13531599-13531618 | Msa0196350:intron | 35.0% |
| AAATATTCTATCAGCTCAGC+TGG | - | chr2_1:13531815-13531834 | None:intergenic | 35.0% | |
| !!! | CTGTTGGTTCACTTGTTTTT+TGG | + | chr2_1:13531846-13531865 | Msa0196350:three_prime_UTR | 35.0% |
| TACCAAACATACATCTTGCA+GGG | - | chr2_1:13531950-13531969 | None:intergenic | 35.0% | |
| ATACCAAACATACATCTTGC+AGG | - | chr2_1:13531951-13531970 | None:intergenic | 35.0% | |
| GTCATTGCTTAGATTGTACG+AGG | - | chr2_1:13528347-13528366 | None:intergenic | 40.0% | |
| ! | AGCTTTCTGGAGAGAAACAT+TGG | - | chr2_1:13528489-13528508 | None:intergenic | 40.0% |
| TCTCCAGAAAGCTCGTAATT+GGG | + | chr2_1:13528496-13528515 | Msa0196350:CDS | 40.0% | |
| AAAGCTCGTAATTGGGATGA+AGG | + | chr2_1:13528503-13528522 | Msa0196350:CDS | 40.0% | |
| GATAGGAGTGGTAGAGAATT+TGG | - | chr2_1:13528537-13528556 | None:intergenic | 40.0% | |
| TATCTCTTAGGGTGCATACA+CGG | + | chr2_1:13529377-13529396 | Msa0196350:intron | 40.0% | |
| CAAACATGTTCCTCCTTACA+AGG | + | chr2_1:13529413-13529432 | Msa0196350:CDS | 40.0% | |
| ATCCATACACTATGAATGCG+TGG | + | chr2_1:13529496-13529515 | Msa0196350:CDS | 40.0% | |
| TCCATACACTATGAATGCGT+GGG | + | chr2_1:13529497-13529516 | Msa0196350:CDS | 40.0% | |
| CAGCACTCATTTCTACTACA+AGG | - | chr2_1:13529664-13529683 | None:intergenic | 40.0% | |
| ATCACGAAGGACATGTACAA+TGG | - | chr2_1:13529723-13529742 | None:intergenic | 40.0% | |
| TACTGATCATCCGCAATGAA+GGG | - | chr2_1:13529755-13529774 | None:intergenic | 40.0% | |
| ! | CAAATTGGCCTACCTTCTTT+GGG | + | chr2_1:13529852-13529871 | Msa0196350:intron | 40.0% |
| ATCTTTCCAAAGACACCAGA+TGG | - | chr2_1:13529882-13529901 | None:intergenic | 40.0% | |
| ! | GGTGTCTTTGGAAAGATCAT+TGG | + | chr2_1:13529885-13529904 | Msa0196350:intron | 40.0% |
| ! | CATTAGACTGGCTGAAGATT+TGG | - | chr2_1:13529960-13529979 | None:intergenic | 40.0% |
| CGTGAATAATGGCATTAGAC+TGG | - | chr2_1:13529972-13529991 | None:intergenic | 40.0% | |
| CCTGGTAGGACCAAAATAAA+TGG | - | chr2_1:13530013-13530032 | None:intergenic | 40.0% | |
| !!! | CCATTTATTTTGGTCCTACC+AGG | + | chr2_1:13530010-13530029 | Msa0196350:intron | 40.0% |
| !!! | TTTATTTTGGTCCTACCAGG+AGG | + | chr2_1:13530013-13530032 | Msa0196350:intron | 40.0% |
| !!! | TTATTTTGGTCCTACCAGGA+GGG | + | chr2_1:13530014-13530033 | Msa0196350:intron | 40.0% |
| CAAATGCGTAATAAGCTCAG+AGG | - | chr2_1:13530154-13530173 | None:intergenic | 40.0% | |
| GCATTTGCGCTCTAATGTTA+TGG | + | chr2_1:13530167-13530186 | Msa0196350:intron | 40.0% | |
| !! | TTGAGTTGGGAATGTTCTTG+TGG | + | chr2_1:13530356-13530375 | Msa0196350:intron | 40.0% |
| TAGTGCTAGTCATGAGTTTG+TGG | + | chr2_1:13530395-13530414 | Msa0196350:intron | 40.0% | |
| ! | ATAATCAGAACTCTGAAGGG+CGG | + | chr2_1:13530465-13530484 | Msa0196350:intron | 40.0% |
| GGAGACTTTGTGTTTCACAA+AGG | + | chr2_1:13530487-13530506 | Msa0196350:intron | 40.0% | |
| TTTGTGTTTCACAAAGGGCA+TGG | + | chr2_1:13530493-13530512 | Msa0196350:intron | 40.0% | |
| !! | TTGAAAAGTGCTAGCAACAC+CGG | + | chr2_1:13530600-13530619 | Msa0196350:intron | 40.0% |
| CCATACATGATTGACAACAC+CGG | - | chr2_1:13530622-13530641 | None:intergenic | 40.0% | |
| GTGTTGTCAATCATGTATGG+CGG | + | chr2_1:13530622-13530641 | Msa0196350:intron | 40.0% | |
| ATAGCGGCACTATATCATAG+AGG | - | chr2_1:13530812-13530831 | None:intergenic | 40.0% | |
| CAACATTCTCTCTCTGAATG+TGG | - | chr2_1:13530898-13530917 | None:intergenic | 40.0% | |
| CACATTCAGAGAGAGAATGT+TGG | + | chr2_1:13530896-13530915 | Msa0196350:intron | 40.0% | |
| TGCATCAATCAATTCCACGA+TGG | + | chr2_1:13531098-13531117 | Msa0196350:intron | 40.0% | |
| AGTCCCCATAAAACTCAATC+TGG | - | chr2_1:13531251-13531270 | None:intergenic | 40.0% | |
| !! | GAGTTTTATGGGGACTTTGA+CGG | + | chr2_1:13531255-13531274 | Msa0196350:CDS | 40.0% |
| !! | AGTTTTATGGGGACTTTGAC+GGG | + | chr2_1:13531256-13531275 | Msa0196350:CDS | 40.0% |
| AGCATATGTGGTAGATGGAA+AGG | + | chr2_1:13531624-13531643 | Msa0196350:CDS | 40.0% | |
| TGTGGTAGATGGAAAGGTTA+AGG | + | chr2_1:13531630-13531649 | Msa0196350:CDS | 40.0% | |
| ! | TTCTGGTGCAGAAACCATTT+TGG | + | chr2_1:13531690-13531709 | Msa0196350:CDS | 40.0% |
| ! | TCTGGTGCAGAAACCATTTT+GGG | + | chr2_1:13531691-13531710 | Msa0196350:CDS | 40.0% |
| TCGAATGTGTGAGAAGAGTG+AGG | - | chr2_1:13528316-13528335 | None:intergenic | 45.0% | |
| ACGAGCACGGTTCATTACAA+AGG | - | chr2_1:13528372-13528391 | None:intergenic | 45.0% | |
| AGGTTGTTGAAGAACGAGCA+CGG | - | chr2_1:13528385-13528404 | None:intergenic | 45.0% | |
| CTTCAGTTCTTCATGGGATC+AGG | + | chr2_1:13528417-13528436 | Msa0196350:CDS | 45.0% | |
| TCTTACGCAAAGGTTGCAAC+TGG | + | chr2_1:13528440-13528459 | Msa0196350:CDS | 45.0% | |
| CTTACGCAAAGGTTGCAACT+GGG | + | chr2_1:13528441-13528460 | Msa0196350:CDS | 45.0% | |
| CTCTCCAGAAAGCTCGTAAT+TGG | + | chr2_1:13528495-13528514 | Msa0196350:CDS | 45.0% | |
| CATCCCAATTACGAGCTTTC+TGG | - | chr2_1:13528502-13528521 | None:intergenic | 45.0% | |
| ATCTCTTAGGGTGCATACAC+GGG | + | chr2_1:13529378-13529397 | Msa0196350:intron | 45.0% | |
| TTTATGGGACCCCTTCATTG+CGG | + | chr2_1:13529742-13529761 | Msa0196350:intron | 45.0% | |
| ACTGATCATCCGCAATGAAG+GGG | - | chr2_1:13529754-13529773 | None:intergenic | 45.0% | |
| CTACTGATCATCCGCAATGA+AGG | - | chr2_1:13529756-13529775 | None:intergenic | 45.0% | |
| TTGGAACAGTGGGTCCAAAT+TGG | + | chr2_1:13529837-13529856 | Msa0196350:intron | 45.0% | |
| CCAAAGAAGGTAGGCCAATT+TGG | - | chr2_1:13529854-13529873 | None:intergenic | 45.0% | |
| ! | CCAAATTGGCCTACCTTCTT+TGG | + | chr2_1:13529851-13529870 | Msa0196350:intron | 45.0% |
| ATGGCAATCCCAAAGAAGGT+AGG | - | chr2_1:13529863-13529882 | None:intergenic | 45.0% | |
| AGTAAGACTGATTGGGGAGT+TGG | + | chr2_1:13529926-13529945 | Msa0196350:intron | 45.0% | |
| ! | ATTTGAAGTTCCCTCCTGGT+AGG | - | chr2_1:13530027-13530046 | None:intergenic | 45.0% |
| ! | GGAAATTTGAAGTTCCCTCC+TGG | - | chr2_1:13530031-13530050 | None:intergenic | 45.0% |
| GGAGGGAACTTCAAATTTCC+TGG | + | chr2_1:13530031-13530050 | Msa0196350:intron | 45.0% | |
| TAAGACCTCCACTAGAAGAG+AGG | - | chr2_1:13530116-13530135 | None:intergenic | 45.0% | |
| ! | TAATCAGAACTCTGAAGGGC+GGG | + | chr2_1:13530466-13530485 | Msa0196350:intron | 45.0% |
| !! | CCGGTGTTGTCAATCATGTA+TGG | + | chr2_1:13530619-13530638 | Msa0196350:intron | 45.0% |
| GCTATAGCACTGTTGTGTAG+CGG | - | chr2_1:13530669-13530688 | None:intergenic | 45.0% | |
| CATTCTCTCTCTGAATGTGG+TGG | - | chr2_1:13530895-13530914 | None:intergenic | 45.0% | |
| !! | CGAAACTACGAAAGTGTCAG+TGG | + | chr2_1:13530921-13530940 | Msa0196350:intron | 45.0% |
| AAATAGTGACTTCGCCGCTT+TGG | - | chr2_1:13531466-13531485 | None:intergenic | 45.0% | |
| GTGTAGATGGTCAGCATATG+TGG | + | chr2_1:13531612-13531631 | Msa0196350:intron | 45.0% | |
| TGGTCAGCATATGTGGTAGA+TGG | + | chr2_1:13531619-13531638 | Msa0196350:CDS | 45.0% | |
| AGAAGCTCCATCTGATGTCA+AGG | + | chr2_1:13531666-13531685 | Msa0196350:CDS | 45.0% | |
| CCAGAAACCTTGACATCAGA+TGG | - | chr2_1:13531676-13531695 | None:intergenic | 45.0% | |
| CCATCTGATGTCAAGGTTTC+TGG | + | chr2_1:13531673-13531692 | Msa0196350:CDS | 45.0% | |
| GACCCTGCAAGATGTATGTT+TGG | + | chr2_1:13531945-13531964 | Msa0196350:three_prime_UTR | 45.0% | |
| TGGGATCAGGTCTTACGCAA+AGG | + | chr2_1:13528430-13528449 | Msa0196350:CDS | 50.0% | |
| GCCCACGCATTCATAGTGTA+TGG | - | chr2_1:13529501-13529520 | None:intergenic | 50.0% | |
| !! | AGTGCTGATGCTACTTGCTC+CGG | + | chr2_1:13529677-13529696 | Msa0196350:intron | 50.0% |
| AGGGGTCCCATAAATCACGA+AGG | - | chr2_1:13529736-13529755 | None:intergenic | 50.0% | |
| CCAGATGGCAATCCCAAAGA+AGG | - | chr2_1:13529867-13529886 | None:intergenic | 50.0% | |
| !! | CCTTCTTTGGGATTGCCATC+TGG | + | chr2_1:13529864-13529883 | Msa0196350:intron | 50.0% |
| GGATTGCCATCTGGTGTCTT+TGG | + | chr2_1:13529873-13529892 | Msa0196350:intron | 50.0% | |
| TCAGCAGACCTCTCTTCTAG+TGG | + | chr2_1:13530105-13530124 | Msa0196350:intron | 50.0% | |
| CGTAATAAGCTCAGAGGGAG+GGG | - | chr2_1:13530148-13530167 | None:intergenic | 50.0% | |
| GCGTAATAAGCTCAGAGGGA+GGG | - | chr2_1:13530149-13530168 | None:intergenic | 50.0% | |
| TGCGTAATAAGCTCAGAGGG+AGG | - | chr2_1:13530150-13530169 | None:intergenic | 50.0% | |
| !! | GCACTGTTGTGTAGCGGATT+TGG | - | chr2_1:13530663-13530682 | None:intergenic | 50.0% |
| GATCTCTCTGGTGCTTTGCT+TGG | + | chr2_1:13531309-13531328 | Msa0196350:CDS | 50.0% | |
| TGCTTGGAACCCGATCTGAA+AGG | + | chr2_1:13531325-13531344 | Msa0196350:CDS | 50.0% | |
| GCGGCGAAGTCACTATTTCA+TGG | + | chr2_1:13531468-13531487 | Msa0196350:intron | 50.0% | |
| TCAGCTCAGCTGGAAACATC+AGG | - | chr2_1:13531805-13531824 | None:intergenic | 50.0% | |
| AGGATCGGGAGAAGTCTTCC+AGG | - | chr2_1:13530052-13530071 | None:intergenic | 55.0% | |
| GCAGACCTCTCTTCTAGTGG+AGG | + | chr2_1:13530108-13530127 | Msa0196350:intron | 55.0% | |
| CGGGAGCTTCCACAAAAGCT+TGG | + | chr2_1:13531275-13531294 | Msa0196350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13528275 | 13532034 | 13528275 | ID=Msa0196350;Name=Msa0196350 |
| chr2_1 | mRNA | 13528275 | 13532034 | 13528275 | ID=Msa0196350-mRNA-1;Parent=Msa0196350;Name=Msa0196350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=87|1|1|1|0.75|1|5|311|199 |
| chr2_1 | exon | 13528275 | 13528571 | 13528275 | ID=Msa0196350-mRNA-1:exon:5826;Parent=Msa0196350-mRNA-1 |
| chr2_1 | exon | 13528683 | 13528712 | 13528683 | ID=Msa0196350-mRNA-1:exon:5827;Parent=Msa0196350-mRNA-1 |
| chr2_1 | exon | 13529387 | 13529545 | 13529387 | ID=Msa0196350-mRNA-1:exon:5828;Parent=Msa0196350-mRNA-1 |
| chr2_1 | exon | 13531252 | 13531346 | 13531252 | ID=Msa0196350-mRNA-1:exon:5829;Parent=Msa0196350-mRNA-1 |
| chr2_1 | exon | 13531618 | 13532034 | 13531618 | ID=Msa0196350-mRNA-1:exon:5830;Parent=Msa0196350-mRNA-1 |
| chr2_1 | five_prime_UTR | 13528275 | 13528361 | 13528275 | ID=Msa0196350-mRNA-1:five_prime_utr;Parent=Msa0196350-mRNA-1 |
| chr2_1 | CDS | 13528362 | 13528571 | 13528362 | ID=Msa0196350-mRNA-1:cds;Parent=Msa0196350-mRNA-1 |
| chr2_1 | CDS | 13528683 | 13528712 | 13528683 | ID=Msa0196350-mRNA-1:cds;Parent=Msa0196350-mRNA-1 |
| chr2_1 | CDS | 13529387 | 13529545 | 13529387 | ID=Msa0196350-mRNA-1:cds;Parent=Msa0196350-mRNA-1 |
| chr2_1 | CDS | 13531252 | 13531346 | 13531252 | ID=Msa0196350-mRNA-1:cds;Parent=Msa0196350-mRNA-1 |
| chr2_1 | CDS | 13531618 | 13531723 | 13531618 | ID=Msa0196350-mRNA-1:cds;Parent=Msa0196350-mRNA-1 |
| chr2_1 | three_prime_UTR | 13531724 | 13532034 | 13531724 | ID=Msa0196350-mRNA-1:three_prime_utr;Parent=Msa0196350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
