Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201520 | Msa0201530 | 0.802449 | 5.581967e-49 | -8.615850e-47 |
| Msa0201520 | Msa0282670 | 0.827037 | 1.951666e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201520 | MtrunA17_Chr2g0297921 | 77.143 | 35 | 7 | 1 | 56 | 89 | 15 | 49 | 6.14e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGTTGAAGAGCAATTTA+TGG | 0.190599 | 2_1:+23124106 | Msa0201520:CDS |
| TCCCTTCAATCTGGTTCTCT+TGG | 0.261209 | 2_1:+23124157 | Msa0201520:CDS |
| CAATCTGGTTCTCTTGGGTT+TGG | 0.272620 | 2_1:+23124163 | Msa0201520:CDS |
| ATGGCAGAAGTTGTTGTAAT+TGG | 0.277120 | 2_1:+23124125 | Msa0201520:CDS |
| CCCTTCAATCTGGTTCTCTT+GGG | 0.318286 | 2_1:+23124158 | Msa0201520:CDS |
| GTGTTGATTCTACTATGAAA+TGG | 0.381479 | 2_1:+23128647 | Msa0201520:CDS |
| TTGTCTGATGATGTGTAAAA+AGG | 0.386614 | 2_1:-23128580 | None:intergenic |
| TGTTGATTCTACTATGAAAT+GGG | 0.403303 | 2_1:+23128648 | Msa0201520:CDS |
| TAGAATTCATCCCTTCAATC+TGG | 0.409924 | 2_1:+23124148 | Msa0201520:CDS |
| TACTCACTAACGAACCTCAT+TGG | 0.430611 | 2_1:-23123968 | None:intergenic |
| TCCTGTACAAAGCTTAAAGA+AGG | 0.452308 | 2_1:+23128543 | Msa0201520:CDS |
| TCCTTCTTTAAGCTTTGTAC+AGG | 0.464171 | 2_1:-23128544 | None:intergenic |
| CCCAAGAGAACCAGATTGAA+GGG | 0.512154 | 2_1:-23124158 | None:intergenic |
| CTTTAAGCTTTGTACAGGAA+AGG | 0.516618 | 2_1:-23128539 | None:intergenic |
| ACCCAAGAGAACCAGATTGA+AGG | 0.522113 | 2_1:-23124159 | None:intergenic |
| TGTGAAGGAAGTTTCTACAT+AGG | 0.588308 | 2_1:+23124072 | Msa0201520:intron |
| TGGGGAGTAACAGAATCTGT+AGG | 0.639252 | 2_1:+23128667 | Msa0201520:CDS |
| GTTGATTCTACTATGAAATG+GGG | 0.643497 | 2_1:+23128649 | Msa0201520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAATTAAGTTAAA+CGG | + | chr2_1:23126554-23126573 | Msa0201520:intron | 10.0% |
| !!! | TTTCTTCTTTTTTTTTTTTT+TGG | + | chr2_1:23127776-23127795 | Msa0201520:intron | 10.0% |
| !!! | CTTAAAAATATATTATGTTT+TGG | - | chr2_1:23127880-23127899 | None:intergenic | 10.0% |
| !!! | TTTTAAAGATATTAACTTTT+TGG | - | chr2_1:23127922-23127941 | None:intergenic | 10.0% |
| !!! | ATAAAAGTATAAATATATGA+AGG | + | chr2_1:23127941-23127960 | Msa0201520:intron | 10.0% |
| !! | ATCTATATTATAGCATTTAA+TGG | - | chr2_1:23126353-23126372 | None:intergenic | 15.0% |
| !!! | TTTTTTATATCGTATGTATA+TGG | - | chr2_1:23127241-23127260 | None:intergenic | 15.0% |
| !!! | TCTAAAATAATACTGAAAAT+TGG | + | chr2_1:23128175-23128194 | Msa0201520:intron | 15.0% |
| !! | AACAAAGCTAATACAATAAA+CGG | - | chr2_1:23124373-23124392 | None:intergenic | 20.0% |
| !!! | GAATCTTTTATACTTTTGTA+AGG | + | chr2_1:23124393-23124412 | Msa0201520:intron | 20.0% |
| !! | TATGAAACTATCTCATATAA+GGG | - | chr2_1:23124705-23124724 | None:intergenic | 20.0% |
| !! | AATGTTTGAGAATAATGAAT+TGG | - | chr2_1:23125238-23125257 | None:intergenic | 20.0% |
| !!! | TTCTTCTATTTGAAATTGTA+GGG | - | chr2_1:23125326-23125345 | None:intergenic | 20.0% |
| !!! | ATTCTTCTATTTGAAATTGT+AGG | - | chr2_1:23125327-23125346 | None:intergenic | 20.0% |
| !! | AACAATTTAGTCAAACTTTA+TGG | - | chr2_1:23125732-23125751 | None:intergenic | 20.0% |
| !!! | TATTTGATTATCTTTTTCTG+TGG | + | chr2_1:23126064-23126083 | Msa0201520:intron | 20.0% |
| !!! | ATTTCCATTTTTTCAGTATA+TGG | - | chr2_1:23126188-23126207 | None:intergenic | 20.0% |
| !!! | AATATAGATTTGCTTTACTA+TGG | + | chr2_1:23126364-23126383 | Msa0201520:intron | 20.0% |
| !! | AACAAAATAACAATTACCAT+AGG | - | chr2_1:23126402-23126421 | None:intergenic | 20.0% |
| !! | TGTTAATTCTTCTATGAAAT+GGG | - | chr2_1:23126808-23126827 | None:intergenic | 20.0% |
| !! | AAAAAAATAGACGAATTGAA+AGG | + | chr2_1:23127189-23127208 | Msa0201520:intron | 20.0% |
| !! | TACACATATTGAAATATAGT+GGG | - | chr2_1:23127445-23127464 | None:intergenic | 20.0% |
| !! | ATACACATATTGAAATATAG+TGG | - | chr2_1:23127446-23127465 | None:intergenic | 20.0% |
| !! | CAAATTTACTCATAAACTAT+TGG | - | chr2_1:23128099-23128118 | None:intergenic | 20.0% |
| !!! | GAGTAAATTTGTTTTTTTGT+AGG | + | chr2_1:23128108-23128127 | Msa0201520:intron | 20.0% |
| !!! | TCAGTATTATTTTAGATGTA+AGG | - | chr2_1:23128171-23128190 | None:intergenic | 20.0% |
| !! | TTTAATATGTACCACATTTA+TGG | + | chr2_1:23128407-23128426 | Msa0201520:intron | 20.0% |
| !! | AAATTATTAGTCCATAAATG+TGG | - | chr2_1:23128421-23128440 | None:intergenic | 20.0% |
| !!! | TTATGGACTAATAATTTCTT+AGG | + | chr2_1:23128424-23128443 | Msa0201520:intron | 20.0% |
| ! | TTTCAATAATAAAACGACTG+AGG | + | chr2_1:23124048-23124067 | Msa0201520:intron | 25.0% |
| !! | TGTGTTTTTCATATTATCGT+TGG | + | chr2_1:23124300-23124319 | Msa0201520:intron | 25.0% |
| !!! | GTATTTTTTTCGTGTAAACT+AGG | + | chr2_1:23124427-23124446 | Msa0201520:intron | 25.0% |
| ! | CTATGAAACTATCTCATATA+AGG | - | chr2_1:23124706-23124725 | None:intergenic | 25.0% |
| !! | AAGTGTGATGTTTATAGTTT+TGG | - | chr2_1:23125351-23125370 | None:intergenic | 25.0% |
| !! | GTAATGAATACTCATTTTAG+AGG | - | chr2_1:23125426-23125445 | None:intergenic | 25.0% |
| !! | ATATCAAGAAGAACATTTTC+TGG | + | chr2_1:23125510-23125529 | Msa0201520:intron | 25.0% |
| ! | GTTTATGAGTATGTTGAAAA+TGG | - | chr2_1:23125678-23125697 | None:intergenic | 25.0% |
| !! | AAACTTTATGGATTCTGTTT+TGG | - | chr2_1:23125720-23125739 | None:intergenic | 25.0% |
| ! | TTTAAAGGAGAATTAGCAAA+TGG | - | chr2_1:23125849-23125868 | None:intergenic | 25.0% |
| ! | TGTAATTTCATCAAGTTTCT+CGG | + | chr2_1:23125914-23125933 | Msa0201520:intron | 25.0% |
| !! | TATTACAACTTCAATTTTGC+TGG | + | chr2_1:23126019-23126038 | Msa0201520:intron | 25.0% |
| ! | TATATTCATGCATACAGAAA+AGG | + | chr2_1:23126739-23126758 | Msa0201520:intron | 25.0% |
| ! | CTGTTAATTCTTCTATGAAA+TGG | - | chr2_1:23126809-23126828 | None:intergenic | 25.0% |
| ! | AAAATTACTCATGTTTGTAC+AGG | + | chr2_1:23126926-23126945 | Msa0201520:intron | 25.0% |
| !!! | AACCATTTTTGTACAACTTT+TGG | - | chr2_1:23127371-23127390 | None:intergenic | 25.0% |
| ! | GTTTCATGCTAAAGAAAATT+AGG | + | chr2_1:23128240-23128259 | Msa0201520:intron | 25.0% |
| ! | AGTTTATTATAGTTGGGATT+TGG | - | chr2_1:23128513-23128532 | None:intergenic | 25.0% |
| ! | CTGTAGAGTTTATTATAGTT+GGG | - | chr2_1:23128519-23128538 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTACTATGAAAT+GGG | + | chr2_1:23128648-23128667 | Msa0201520:CDS | 25.0% |
| !!! | AGGTTTTGGAAGGTTTATAA+TGG | + | chr2_1:23124022-23124041 | Msa0201520:intron | 30.0% |
| ! | ATTTTCCTAGTTACAAAGCT+TGG | - | chr2_1:23124189-23124208 | None:intergenic | 30.0% |
| AACACATCAAATTCCGAATT+CGG | - | chr2_1:23124286-23124305 | None:intergenic | 30.0% | |
| AGAGACTAATTTATAGAGTC+AGG | + | chr2_1:23124470-23124489 | Msa0201520:intron | 30.0% | |
| CATAACTTTGTCTTCCATTA+TGG | - | chr2_1:23124501-23124520 | None:intergenic | 30.0% | |
| ! | CATAATGGAAGACAAAGTTA+TGG | + | chr2_1:23124499-23124518 | Msa0201520:intron | 30.0% |
| TCAAGCAAAGAATATTCTGT+TGG | + | chr2_1:23124652-23124671 | Msa0201520:intron | 30.0% | |
| ! | AGGGTTCAACATACTAATTT+TGG | - | chr2_1:23124686-23124705 | None:intergenic | 30.0% |
| ATCTAAGTGCATGTTTAGAT+TGG | + | chr2_1:23124761-23124780 | Msa0201520:intron | 30.0% | |
| !! | TTTGTTGAAGCTTTGAAGTA+CGG | - | chr2_1:23124834-23124853 | None:intergenic | 30.0% |
| TTTAACGAAATCACGTTACA+CGG | - | chr2_1:23124869-23124888 | None:intergenic | 30.0% | |
| AAAGAAAATCTGACACAAGA+AGG | - | chr2_1:23125024-23125043 | None:intergenic | 30.0% | |
| ACATCACACTTATATGTTAC+TGG | + | chr2_1:23125360-23125379 | Msa0201520:intron | 30.0% | |
| CACTTATATGTTACTGGATA+AGG | + | chr2_1:23125366-23125385 | Msa0201520:intron | 30.0% | |
| !! | AATCCGAAATCAGCTATTTT+TGG | + | chr2_1:23125477-23125496 | Msa0201520:intron | 30.0% |
| ! | GTACCAAAAATAGCTGATTT+CGG | - | chr2_1:23125483-23125502 | None:intergenic | 30.0% |
| AGGAATTGCTTATTTACATG+AGG | - | chr2_1:23125571-23125590 | None:intergenic | 30.0% | |
| TCTCTAGACAAGTACTTATT+TGG | - | chr2_1:23125654-23125673 | None:intergenic | 30.0% | |
| AAAAGCTACTCAACCATATT+AGG | - | chr2_1:23125894-23125913 | None:intergenic | 30.0% | |
| GTAATTTCATCAAGTTTCTC+GGG | + | chr2_1:23125915-23125934 | Msa0201520:intron | 30.0% | |
| ! | AATTCAGCTTTTGAATCTTG+TGG | + | chr2_1:23125996-23126015 | Msa0201520:intron | 30.0% |
| ! | TGATTATCTTTTTCTGTGGT+TGG | + | chr2_1:23126068-23126087 | Msa0201520:intron | 30.0% |
| !!! | CATTTTTTCAGTATATGGAG+TGG | - | chr2_1:23126183-23126202 | None:intergenic | 30.0% |
| CACTCCATATACTGAAAAAA+TGG | + | chr2_1:23126181-23126200 | Msa0201520:intron | 30.0% | |
| CCAAAACTGAGTAATATTGA+GGG | - | chr2_1:23126430-23126449 | None:intergenic | 30.0% | |
| ACCAAAACTGAGTAATATTG+AGG | - | chr2_1:23126431-23126450 | None:intergenic | 30.0% | |
| ! | CAGAAAACTTTTGACAGATT+TGG | - | chr2_1:23126837-23126856 | None:intergenic | 30.0% |
| !! | ATCAGACAATTTTGATACAC+AGG | - | chr2_1:23128594-23128613 | None:intergenic | 30.0% |
| GATGATGAAGTGTAAAAAGA+AGG | + | chr2_1:23126879-23126898 | Msa0201520:intron | 30.0% | |
| AATTCCAACCATAAACTCTT+AGG | - | chr2_1:23126956-23126975 | None:intergenic | 30.0% | |
| AAGAGTTTATGGTTGGAATT+TGG | + | chr2_1:23126956-23126975 | Msa0201520:intron | 30.0% | |
| GGATTGAGAAATGATTCAAA+TGG | + | chr2_1:23126977-23126996 | Msa0201520:intron | 30.0% | |
| TTATTTGACACTTACAAGCA+AGG | - | chr2_1:23127035-23127054 | None:intergenic | 30.0% | |
| !! | TAGAATTGATGGACTTGATT+TGG | - | chr2_1:23127075-23127094 | None:intergenic | 30.0% |
| AATCAAGTCCATCAATTCTA+TGG | + | chr2_1:23127075-23127094 | Msa0201520:intron | 30.0% | |
| CATTATGTCCATAGAATTGA+TGG | - | chr2_1:23127086-23127105 | None:intergenic | 30.0% | |
| AATAACAAGACAGAACAACA+AGG | - | chr2_1:23127284-23127303 | None:intergenic | 30.0% | |
| CTCCAAAAGTTGTACAAAAA+TGG | + | chr2_1:23127366-23127385 | Msa0201520:intron | 30.0% | |
| ! | CATATTGAAATATAGTGGGA+TGG | - | chr2_1:23127441-23127460 | None:intergenic | 30.0% |
| TAAGAAGTTCATTCATCGTA+AGG | + | chr2_1:23127494-23127513 | Msa0201520:intron | 30.0% | |
| ! | TCGTAAGGTTGAATTCTTTT+AGG | + | chr2_1:23127509-23127528 | Msa0201520:intron | 30.0% |
| ! | CGTAAGGTTGAATTCTTTTA+GGG | + | chr2_1:23127510-23127529 | Msa0201520:intron | 30.0% |
| AACTTGCCTTATCATTTCAA+TGG | + | chr2_1:23128144-23128163 | Msa0201520:intron | 30.0% | |
| TAAGGTCCATTGAAATGATA+AGG | - | chr2_1:23128153-23128172 | None:intergenic | 30.0% | |
| ! | TTTTACTAAGTCAAGGTTCT+AGG | - | chr2_1:23128380-23128399 | None:intergenic | 30.0% |
| GCTGTAGAGTTTATTATAGT+TGG | - | chr2_1:23128520-23128539 | None:intergenic | 30.0% | |
| ! | TTGTCTGATGATGTGTAAAA+AGG | - | chr2_1:23128583-23128602 | None:intergenic | 30.0% |
| !! | ATCAGACAATTTTGATACAC+AGG | + | chr2_1:23128594-23128613 | Msa0201520:CDS | 30.0% |
| !! | GTGTTGATTCTACTATGAAA+TGG | + | chr2_1:23128647-23128666 | Msa0201520:CDS | 30.0% |
| ! | GTTGATTCTACTATGAAATG+GGG | + | chr2_1:23128649-23128668 | Msa0201520:CDS | 30.0% |
| TGTGAAGGAAGTTTCTACAT+AGG | + | chr2_1:23124072-23124091 | Msa0201520:intron | 35.0% | |
| GAGAGTTGAAGAGCAATTTA+TGG | + | chr2_1:23124106-23124125 | Msa0201520:CDS | 35.0% | |
| ATGGCAGAAGTTGTTGTAAT+TGG | + | chr2_1:23124125-23124144 | Msa0201520:CDS | 35.0% | |
| TAGAATTCATCCCTTCAATC+TGG | + | chr2_1:23124148-23124167 | Msa0201520:CDS | 35.0% | |
| TCTGTGATTGTAACCGAATT+CGG | + | chr2_1:23124270-23124289 | Msa0201520:intron | 35.0% | |
| ! | TTGAGACTGATTCTATGACT+TGG | - | chr2_1:23124329-23124348 | None:intergenic | 35.0% |
| ACATGCACTTAGATGTATCA+TGG | - | chr2_1:23124755-23124774 | None:intergenic | 35.0% | |
| TAAGTGCATGTTTAGATTGG+TGG | + | chr2_1:23124764-23124783 | Msa0201520:intron | 35.0% | |
| !! | ATGTTTAGATTGGTGGTGTT+GGG | + | chr2_1:23124771-23124790 | Msa0201520:intron | 35.0% |
| ! | TTAGTGCATGTTTGGAATCA+AGG | - | chr2_1:23124896-23124915 | None:intergenic | 35.0% |
| ATTCCAAACATGCACTAAGT+AGG | + | chr2_1:23124898-23124917 | Msa0201520:intron | 35.0% | |
| AAACCTACTTAGTGCATGTT+TGG | - | chr2_1:23124904-23124923 | None:intergenic | 35.0% | |
| ACAGAATCTTTCAGAGAATC+TGG | - | chr2_1:23124961-23124980 | None:intergenic | 35.0% | |
| ! | TGTGTCAGATTTTCTTTAGC+AGG | + | chr2_1:23125027-23125046 | Msa0201520:intron | 35.0% |
| CTTTAGCAGGAACAAGATTA+TGG | + | chr2_1:23125040-23125059 | Msa0201520:intron | 35.0% | |
| ACAAGATTATGGAAGGGAAA+TGG | + | chr2_1:23125051-23125070 | Msa0201520:intron | 35.0% | |
| ACTGTTGTGAAGATGTTAGA+GGG | - | chr2_1:23125099-23125118 | None:intergenic | 35.0% | |
| TACTGTTGTGAAGATGTTAG+AGG | - | chr2_1:23125100-23125119 | None:intergenic | 35.0% | |
| TTCACAACAGTACTCATTAG+AGG | + | chr2_1:23125108-23125127 | Msa0201520:intron | 35.0% | |
| CTCATTAGAGGTCTATCATT+TGG | + | chr2_1:23125120-23125139 | Msa0201520:intron | 35.0% | |
| AATAGCAGAGAGAATGTTGA+AGG | - | chr2_1:23125172-23125191 | None:intergenic | 35.0% | |
| TTGAAATTGTAGGGAGAAGA+AGG | - | chr2_1:23125317-23125336 | None:intergenic | 35.0% | |
| TCACGAGATTTCTATTGGAA+CGG | - | chr2_1:23125598-23125617 | None:intergenic | 35.0% | |
| CAGTTTCACGAGATTTCTAT+TGG | - | chr2_1:23125603-23125622 | None:intergenic | 35.0% | |
| AAAGCAGAAGTTAGCACTAT+TGG | - | chr2_1:23125768-23125787 | None:intergenic | 35.0% | |
| GTTCTCAACTGTTTGGATAT+GGG | - | chr2_1:23125807-23125826 | None:intergenic | 35.0% | |
| AGTTCTCAACTGTTTGGATA+TGG | - | chr2_1:23125808-23125827 | None:intergenic | 35.0% | |
| AGTGAAAGTTCTCAACTGTT+TGG | - | chr2_1:23125814-23125833 | None:intergenic | 35.0% | |
| !!! | GCTTTTGGAGTTGTCTTTAA+AGG | - | chr2_1:23125864-23125883 | None:intergenic | 35.0% |
| !! | ATATTAGGTTCTGGTGCTTT+TGG | - | chr2_1:23125879-23125898 | None:intergenic | 35.0% |
| !! | AAAAGCACCAGAACCTAATA+TGG | + | chr2_1:23125878-23125897 | Msa0201520:intron | 35.0% |
| TACTCAACCATATTAGGTTC+TGG | - | chr2_1:23125888-23125907 | None:intergenic | 35.0% | |
| GTTGCTTAAGAATCTTTCCA+TGG | + | chr2_1:23125968-23125987 | Msa0201520:intron | 35.0% | |
| CTTAAGAATCTTTCCATGGT+TGG | + | chr2_1:23125972-23125991 | Msa0201520:intron | 35.0% | |
| AAAAGCTGAATTTCCAACCA+TGG | - | chr2_1:23125988-23126007 | None:intergenic | 35.0% | |
| ATTGAGTGTCTAAAGAAAGC+CGG | - | chr2_1:23126122-23126141 | None:intergenic | 35.0% | |
| CGCATACACTATTGCTATAA+CGG | + | chr2_1:23126145-23126164 | Msa0201520:intron | 35.0% | |
| !! | TTTTTCAGTATATGGAGTGG+TGG | - | chr2_1:23126180-23126199 | None:intergenic | 35.0% |
| CAAATGTCTTGTACTTGGAT+TGG | - | chr2_1:23126242-23126261 | None:intergenic | 35.0% | |
| CCAAACAAATGTCTTGTACT+TGG | - | chr2_1:23126247-23126266 | None:intergenic | 35.0% | |
| CCAAGTACAAGACATTTGTT+TGG | + | chr2_1:23126244-23126263 | Msa0201520:intron | 35.0% | |
| GTACAAGACATTTGTTTGGT+AGG | + | chr2_1:23126248-23126267 | Msa0201520:intron | 35.0% | |
| ATGGCATGTAATTATGCCTA+TGG | + | chr2_1:23126383-23126402 | Msa0201520:intron | 35.0% | |
| ! | CCCTCAATATTACTCAGTTT+TGG | + | chr2_1:23126427-23126446 | Msa0201520:intron | 35.0% |
| GATGAAGTGTAAAAAGAAGG+AGG | + | chr2_1:23126882-23126901 | Msa0201520:intron | 35.0% | |
| TAAAAAGAAGGAGGAGAATC+AGG | + | chr2_1:23126891-23126910 | Msa0201520:intron | 35.0% | |
| TTACTCATGTTTGTACAGGA+AGG | + | chr2_1:23126930-23126949 | Msa0201520:intron | 35.0% | |
| ! | GTCAATGAAGTTGACTTAGT+TGG | + | chr2_1:23127471-23127490 | Msa0201520:intron | 35.0% |
| !! | AAGGTTGAATTCTTTTAGGG+AGG | + | chr2_1:23127513-23127532 | Msa0201520:intron | 35.0% |
| !! | AGGTTGAATTCTTTTAGGGA+GGG | + | chr2_1:23127514-23127533 | Msa0201520:intron | 35.0% |
| !! | GTGTGTTGACTATTTAAGCT+TGG | + | chr2_1:23127543-23127562 | Msa0201520:intron | 35.0% |
| GACTATTTAAGCTTGGAACA+AGG | + | chr2_1:23127550-23127569 | Msa0201520:intron | 35.0% | |
| CATCAAAGAGAGATGATTGA+GGG | - | chr2_1:23127661-23127680 | None:intergenic | 35.0% | |
| GAAAGAGAAATAGAGAGAGA+TGG | + | chr2_1:23127711-23127730 | Msa0201520:intron | 35.0% | |
| ACCTTCCTTCAGAAAAGATT+TGG | + | chr2_1:23128293-23128312 | Msa0201520:intron | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_1:23128297-23128316 | None:intergenic | 35.0% |
| CAACAAAGTTGAGATGATGA+AGG | + | chr2_1:23128330-23128349 | Msa0201520:intron | 35.0% | |
| !!! | ACGCGTTTTTTACTAAGTCA+AGG | - | chr2_1:23128387-23128406 | None:intergenic | 35.0% |
| ! | CTTTAAGCTTTGTACAGGAA+AGG | - | chr2_1:23128542-23128561 | None:intergenic | 35.0% |
| TCCTGTACAAAGCTTAAAGA+AGG | + | chr2_1:23128543-23128562 | Msa0201520:CDS | 35.0% | |
| ! | TCCTTCTTTAAGCTTTGTAC+AGG | - | chr2_1:23128547-23128566 | None:intergenic | 35.0% |
| ! | CTGATGATGTGTAAAAAGGA+AGG | - | chr2_1:23128579-23128598 | None:intergenic | 35.0% |
| !!! | ATAACTGACTCGAGAGGTTT+TGG | + | chr2_1:23124008-23124027 | Msa0201520:intron | 40.0% |
| ! | TTTGGCCAAGCTTTGTAACT+AGG | + | chr2_1:23124181-23124200 | Msa0201520:intron | 40.0% |
| AGAGTCAGGTATGACCATAA+TGG | + | chr2_1:23124484-23124503 | Msa0201520:intron | 40.0% | |
| TTCAACACTGCTGCATTCAT+AGG | + | chr2_1:23124531-23124550 | Msa0201520:intron | 40.0% | |
| !! | CATGTTTAGATTGGTGGTGT+TGG | + | chr2_1:23124770-23124789 | Msa0201520:intron | 40.0% |
| GCTTGTGTCATATTCATGGT+CGG | - | chr2_1:23124812-23124831 | None:intergenic | 40.0% | |
| TACGGCTTGTGTCATATTCA+TGG | - | chr2_1:23124816-23124835 | None:intergenic | 40.0% | |
| AGCAGGAACAAGATTATGGA+AGG | + | chr2_1:23125044-23125063 | Msa0201520:intron | 40.0% | |
| GCAGGAACAAGATTATGGAA+GGG | + | chr2_1:23125045-23125064 | Msa0201520:intron | 40.0% | |
| AGATTATGGAAGGGAAATGG+AGG | + | chr2_1:23125054-23125073 | Msa0201520:intron | 40.0% | |
| GAATGTTGAAGGTTGCTCTT+TGG | - | chr2_1:23125161-23125180 | None:intergenic | 40.0% | |
| GTTGTTATGCTTGCACTTTG+TGG | - | chr2_1:23125216-23125235 | None:intergenic | 40.0% | |
| AACATTTCCCATGTCCACTT+TGG | + | chr2_1:23125252-23125271 | Msa0201520:intron | 40.0% | |
| ATGGTTTCCAAAGTGGACAT+GGG | - | chr2_1:23125262-23125281 | None:intergenic | 40.0% | |
| AATGGTTTCCAAAGTGGACA+TGG | - | chr2_1:23125263-23125282 | None:intergenic | 40.0% | |
| GCTATAGTGAATCGCAACAA+TGG | - | chr2_1:23125281-23125300 | None:intergenic | 40.0% | |
| !! | ACTCATTTTAGAGGAACGAG+AGG | - | chr2_1:23125417-23125436 | None:intergenic | 40.0% |
| ATTTCTATTGGAACGGCGAA+AGG | - | chr2_1:23125591-23125610 | None:intergenic | 40.0% | |
| CAACTGTTTGGATATGGGAA+TGG | - | chr2_1:23125802-23125821 | None:intergenic | 40.0% | |
| ! | TCTTGTACTTGGATTGGAAG+AGG | - | chr2_1:23126236-23126255 | None:intergenic | 40.0% |
| GCTATATCTTGCAGAGCTTA+TGG | + | chr2_1:23126607-23126626 | Msa0201520:intron | 40.0% | |
| AAGGCCTAAGAGTTTATGGT+TGG | + | chr2_1:23126949-23126968 | Msa0201520:intron | 40.0% | |
| TGATTCAAATGGCATGCAAG+TGG | + | chr2_1:23126988-23127007 | Msa0201520:intron | 40.0% | |
| ! | ACGCGTTTTTGCTTAGTCAA+AGG | + | chr2_1:23127120-23127139 | Msa0201520:intron | 40.0% |
| TTTGCTTAGTCAAAGGCTCT+AGG | + | chr2_1:23127127-23127146 | Msa0201520:intron | 40.0% | |
| !! | GGTTGAATTCTTTTAGGGAG+GGG | + | chr2_1:23127515-23127534 | Msa0201520:intron | 40.0% |
| CCATCAAAGAGAGATGATTG+AGG | - | chr2_1:23127662-23127681 | None:intergenic | 40.0% | |
| CCTCAATCATCTCTCTTTGA+TGG | + | chr2_1:23127659-23127678 | Msa0201520:intron | 40.0% | |
| AGAGATGCATTCTTCTTGTG+TGG | + | chr2_1:23127842-23127861 | Msa0201520:intron | 40.0% | |
| ! | GCAGTCCAAATCTTTTCTGA+AGG | - | chr2_1:23128301-23128320 | None:intergenic | 40.0% |
| !! | CAACAGATAACTGACTCGAG+AGG | + | chr2_1:23124002-23124021 | Msa0201520:intron | 45.0% |
| TAAAACGACTGAGGCTGTGA+AGG | + | chr2_1:23124057-23124076 | Msa0201520:intron | 45.0% | |
| !! | TCCCTTCAATCTGGTTCTCT+TGG | + | chr2_1:23124157-23124176 | Msa0201520:CDS | 45.0% |
| CCCAAGAGAACCAGATTGAA+GGG | - | chr2_1:23124161-23124180 | None:intergenic | 45.0% | |
| !! | CCCTTCAATCTGGTTCTCTT+GGG | + | chr2_1:23124158-23124177 | Msa0201520:CDS | 45.0% |
| ACCCAAGAGAACCAGATTGA+AGG | - | chr2_1:23124162-23124181 | None:intergenic | 45.0% | |
| !! | CAATCTGGTTCTCTTGGGTT+TGG | + | chr2_1:23124163-23124182 | Msa0201520:CDS | 45.0% |
| GATTCTGTACGCCATGATGA+TGG | + | chr2_1:23124973-23124992 | Msa0201520:intron | 45.0% | |
| CTGATACGACTCCATCATCA+TGG | - | chr2_1:23124987-23125006 | None:intergenic | 45.0% | |
| CGCAACAATGGTTTCCAAAG+TGG | - | chr2_1:23125269-23125288 | None:intergenic | 45.0% | |
| GGATAAGGCTTCCACATTTC+TGG | + | chr2_1:23125381-23125400 | Msa0201520:intron | 45.0% | |
| AAACAAGTGCTCTTGTGTCG+TGG | + | chr2_1:23125694-23125713 | Msa0201520:intron | 45.0% | |
| TTCTCGGGCGTGAATCTTAT+CGG | + | chr2_1:23125930-23125949 | Msa0201520:intron | 45.0% | |
| GTTGGAATCTGAGTGTAAGC+TGG | + | chr2_1:23126086-23126105 | Msa0201520:intron | 45.0% | |
| ! | GTAAGCTGGAATTGCTGTTC+CGG | + | chr2_1:23126100-23126119 | Msa0201520:intron | 45.0% |
| CAGGAAGGCCTAAGAGTTTA+TGG | + | chr2_1:23126945-23126964 | Msa0201520:intron | 45.0% | |
| ! | CTTCTTGTGTGGTGACTTGT+TGG | + | chr2_1:23127853-23127872 | Msa0201520:intron | 45.0% |
| TGGGGAGTAACAGAATCTGT+AGG | + | chr2_1:23128667-23128686 | Msa0201520:CDS | 45.0% | |
| !!! | CTGACTCGAGAGGTTTTGGA+AGG | + | chr2_1:23124012-23124031 | Msa0201520:intron | 50.0% |
| TGGAAGGGAAATGGAGGTGA+AGG | + | chr2_1:23125060-23125079 | Msa0201520:intron | 50.0% | |
| !! | AGGCTTCCACATTTCTGGTG+CGG | + | chr2_1:23125386-23125405 | Msa0201520:intron | 50.0% |
| GATATGCCGCACCAGAAATG+TGG | - | chr2_1:23125395-23125414 | None:intergenic | 50.0% | |
| GCAACTCAACGTCACGATTC+TGG | + | chr2_1:23125625-23125644 | Msa0201520:intron | 50.0% | |
| ! | GATTTTGCTCGATCCTCCGT+CGG | + | chr2_1:23127591-23127610 | Msa0201520:intron | 50.0% |
| ! | GGTGGTGTTGGGCGAAATCA+TGG | + | chr2_1:23124782-23124801 | Msa0201520:intron | 55.0% |
| TGGGCTGTAGCAGCATCTGT+AGG | - | chr2_1:23126789-23126808 | None:intergenic | 55.0% | |
| AGCAGCGAGCAAAGCTCCGA+CGG | - | chr2_1:23127610-23127629 | None:intergenic | 60.0% | |
| GGAGCTTTGCTCGCTGCTCA+TGG | + | chr2_1:23127612-23127631 | Msa0201520:intron | 60.0% | |
| AGCGAGCAAAGCTCCGACGG+AGG | - | chr2_1:23127607-23127626 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 23123971 | 23128702 | 23123971 | ID=Msa0201520;Name=Msa0201520 |
| chr2_1 | mRNA | 23123971 | 23128702 | 23123971 | ID=Msa0201520-mRNA-1;Parent=Msa0201520;Name=Msa0201520-mRNA-1;_AED=0.60;_eAED=0.60;_QI=0|0|0|1|0|0|3|0|94 |
| chr2_1 | exon | 23123971 | 23123975 | 23123971 | ID=Msa0201520-mRNA-1:exon:9036;Parent=Msa0201520-mRNA-1 |
| chr2_1 | exon | 23124079 | 23124194 | 23124079 | ID=Msa0201520-mRNA-1:exon:9037;Parent=Msa0201520-mRNA-1 |
| chr2_1 | exon | 23128539 | 23128702 | 23128539 | ID=Msa0201520-mRNA-1:exon:9038;Parent=Msa0201520-mRNA-1 |
| chr2_1 | CDS | 23123971 | 23123975 | 23123971 | ID=Msa0201520-mRNA-1:cds;Parent=Msa0201520-mRNA-1 |
| chr2_1 | CDS | 23124079 | 23124194 | 23124079 | ID=Msa0201520-mRNA-1:cds;Parent=Msa0201520-mRNA-1 |
| chr2_1 | CDS | 23128539 | 23128702 | 23128539 | ID=Msa0201520-mRNA-1:cds;Parent=Msa0201520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
