AlfalfaGEDB | Msa0202780

M. sativa cultivar zhongmu-4 / Msa0202780

KEGG: -
GO: -
PFAM: PF10998.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202780	XP_013463471.2	98.571	350	5	0	1	350	1	350	0.0	710

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202780	sp\|B9RK42\|GPC1_RICCO	76.796	362	65	2	3	345	1	362	0.0	578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202780	A0A396J8A6	98.571	350	5	0	1	350	1	350	0.0	710

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0183870	Msa0202780	0.804978	1.665992e-49	-8.615850e-47
Msa0202780	Msa0389740	0.985224	6.622330e-163	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202780	MtrunA17_Chr2g0300041	98.571	350	5	0	1	350	1	350	0.0	710
Msa0202780	MtrunA17_Chr4g0070761	79.167	312	62	1	16	324	14	325	0.0	527

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202780	AT5G35460.1	76.124	356	67	2	6	343	3	358	0.0	560
Msa0202780	AT5G35460.2	76.124	356	67	2	6	343	3	358	0.0	560

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Find 78 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTATTATGATTACG+TGG	0.685134	2_1:+25403652	None:intergenic
AAACAGCCATGTACATAGAT+AGG	0.426768	2_1:+25400320	None:intergenic
AACATGTGGTGGCGCTTAAG+TGG	0.500643	2_1:-25399862	Msa0202780:CDS
AATGTTTACGGTGGCAACGA+TGG	0.607699	2_1:-25399791	Msa0202780:CDS
AATTTATAGGACAAGAATAT+CGG	0.491436	2_1:+25399757	None:intergenic
ACAATCAATGCCCATGCTAA+CGG	0.568226	2_1:+25401972	None:intergenic
ACATACTCATTGAACAACGT+TGG	0.605939	2_1:+25403550	None:intergenic
ACATGAAAGTTTCATCAACA+AGG	0.659659	2_1:-25403266	Msa0202780:intron
ACGTTTGAGAGATAGGTCAA+AGG	0.620864	2_1:-25403469	Msa0202780:intron
ACTCATTGAACAACGTTGGA+TGG	0.548800	2_1:+25403554	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGAAAGTTTCATCAACA+AGG	-	chr2_1:25399733-25399752	Msa0202780:CDS	30.0%
TTTCATCATTTATGGCCATT+TGG	-	chr2_1:25399857-25399876	Msa0202780:CDS	30.0%
TTCATCATTTATGGCCATTT+GGG	-	chr2_1:25399858-25399877	Msa0202780:CDS	30.0%
TCAATATTCACATACCCAAA+TGG	+	chr2_1:25399875-25399894	None:intergenic	30.0%
TTATTGAATGTTCTTGGCTT+TGG	-	chr2_1:25399959-25399978	Msa0202780:intron	30.0%
TCTATCATTCTAAGTGATTC+GGG	-	chr2_1:25400021-25400040	Msa0202780:intron	30.0%
CTGAGATATGTTAATTTACC+AGG	+	chr2_1:25400219-25400238	None:intergenic	30.0%
AACTGTCAAAAACATGGAAT+CGG	-	chr2_1:25400602-25400621	Msa0202780:intron	30.0%
TTATCGCTGTCATTATCATA+AGG	-	chr2_1:25400733-25400752	Msa0202780:intron	30.0%
AACTATTGTTCATGTGTTTC+AGG	-	chr2_1:25400819-25400838	Msa0202780:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	25399218	25403803	25399218	ID=Msa0202780;Name=Msa0202780
chr2_1	mRNA	25399218	25403803	25399218	ID=Msa0202780-mRNA-1;Parent=Msa0202780;Name=Msa0202780-mRNA-1;_AED=0.12;_eAED=0.12;_QI=244\|1\|1\|1\|1\|1\|8\|391\|350
chr2_1	exon	25399218	25399915	25399218	ID=Msa0202780-mRNA-1:exon:9755;Parent=Msa0202780-mRNA-1
chr2_1	exon	25400210	25400447	25400210	ID=Msa0202780-mRNA-1:exon:9754;Parent=Msa0202780-mRNA-1
chr2_1	exon	25401904	25401997	25401904	ID=Msa0202780-mRNA-1:exon:9753;Parent=Msa0202780-mRNA-1
chr2_1	exon	25402085	25402180	25402085	ID=Msa0202780-mRNA-1:exon:9752;Parent=Msa0202780-mRNA-1
chr2_1	exon	25402802	25402902	25402802	ID=Msa0202780-mRNA-1:exon:9751;Parent=Msa0202780-mRNA-1
chr2_1	exon	25403014	25403071	25403014	ID=Msa0202780-mRNA-1:exon:9750;Parent=Msa0202780-mRNA-1
chr2_1	exon	25403267	25403335	25403267	ID=Msa0202780-mRNA-1:exon:9749;Parent=Msa0202780-mRNA-1
chr2_1	exon	25403470	25403803	25403470	ID=Msa0202780-mRNA-1:exon:9748;Parent=Msa0202780-mRNA-1
chr2_1	five_prime_UTR	25403560	25403803	25403560	ID=Msa0202780-mRNA-1:five_prime_utr;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25403470	25403559	25403470	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25403267	25403335	25403267	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25403014	25403071	25403014	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25402802	25402902	25402802	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25402085	25402180	25402085	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25401904	25401997	25401904	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25400210	25400447	25400210	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	CDS	25399609	25399915	25399609	ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1
chr2_1	three_prime_UTR	25399218	25399608	25399218	ID=Msa0202780-mRNA-1:three_prime_utr;Parent=Msa0202780-mRNA-1

Gene Sequence

>Msa0202780

ATGAGTATGTCTGAAAACGAAGAACACGTAGATTACACCGACATCGAACCTTCTGCAGCGGCTAGAAAACGTTTGAGAGATAGGTCAAAGGAGGTGTTGTCTAAACAAGCTGTTAAGATCGCTAAACGTGCTGAAGAACATGAAAGTTTCATCAACAAGGTTACTCATTTATTGAATGTTCTTGGCTTTGGTGGTTTTTGTTTCATCTTAGGAGCAAGACCACAAGATGTTCCTTTAGTGTATTGTTTGTTCTACTTTGTCTTTGTTCCTCTTCGTTGGATATACTATAGGTTCAAGAAATGGCATTACTATCTCCTGGACTTTTGCTACTATGCCAATACAATCTTTTTGGTTTACCTTCTTTTTTATCCAAAGAATGAGAAGCTTTTTCTGGTCTGCTTTTCATTTGCTGAGGGTCCGTTAGCATGGGCATTGATTGTTTGGCGTTGCAGTTTGGTGTTCAGTTCGCTTGACAAAATCGTTAGTGTTCTTATCCATCTTTTACCAGGATTGGTTTTCTTTACCATTCGATGGTGGAATCCTGAGACCTTAGAAGCTATGCGACCAGAGGGAGCTGCCGCAAGAGTTACATGGCCTTATATTGAAGATAAATCCTATCTATGTACATGGCTGTTTCTGGTTCCCTTAGTAGTTTACACCTTGTGGCAGATTCTATACTACCTCATTGTCAATGTCTTACGCCGACAACGGTTTTTAAGAGATCCTGAAGTCATGACTTCCTATAGGGAACTGTCTAAAAAAGCTCAGAAAGCAAATAACATGTGGTGGCGCTTAAGTGGCTTGCTCGGGGATCAAAACCGCTTGTTAATGTTCATTCTTCTTCAAGGAATGTTTACGGTGGCAACGATGGCGCTGACTGTTCCGATATTCTTGTCCTATAAATTGTCAGTGGTTTTTCAAATACTGAAGGTTTCTGCATCAGTGTGGAATGGAGCAAGCTTTCTGTTGGAAGTTATGCCTAGGCAGGTTATTCTCAAGGAGAAAAAGAAAACAGAGATGCAAACTGTTCCAATACTAAATGATCAATCATAG

Protein sequence

>Msa0202780

MSMSENEEHVDYTDIEPSAAARKRLRDRSKEVLSKQAVKIAKRAEEHESFINKVTHLLNVLGFGGFCFILGARPQDVPLVYCLFYFVFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVYLLFYPKNEKLFLVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIHLLPGLVFFTIRWWNPETLEAMRPEGAAARVTWPYIEDKSYLCTWLFLVPLVVYTLWQILYYLIVNVLRRQRFLRDPEVMTSYRELSKKAQKANNMWWRLSGLLGDQNRLLMFILLQGMFTVATMALTVPIFLSYKLSVVFQILKVSASVWNGASFLLEVMPRQVILKEKKKTEMQTVPILNDQS*