Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202780 | XP_013463471.2 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202780 | sp|B9RK42|GPC1_RICCO | 76.796 | 362 | 65 | 2 | 3 | 345 | 1 | 362 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202780 | A0A396J8A6 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183870 | Msa0202780 | 0.804978 | 1.665992e-49 | -8.615850e-47 |
| Msa0202780 | Msa0389740 | 0.985224 | 6.622330e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202780 | MtrunA17_Chr2g0300041 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 710 |
| Msa0202780 | MtrunA17_Chr4g0070761 | 79.167 | 312 | 62 | 1 | 16 | 324 | 14 | 325 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202780 | AT5G35460.1 | 76.124 | 356 | 67 | 2 | 6 | 343 | 3 | 358 | 0.0 | 560 |
| Msa0202780 | AT5G35460.2 | 76.124 | 356 | 67 | 2 | 6 | 343 | 3 | 358 | 0.0 | 560 |
Find 78 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTACATGGCTGTTTC+TGG | 0.136807 | 2_1:-25400316 | Msa0202780:CDS |
| TTAGCTTTACACCATGAAAT+TGG | 0.235186 | 2_1:+25403740 | None:intergenic |
| ATTACGTGGAATAAGAAAAT+TGG | 0.248701 | 2_1:+25403666 | None:intergenic |
| TAGGATTTATCTTCAATATA+AGG | 0.285131 | 2_1:+25400339 | None:intergenic |
| ACTCATTTATTGAATGTTCT+TGG | 0.292836 | 2_1:-25403046 | Msa0202780:CDS |
| TAGCATGGGCATTGATTGTT+TGG | 0.342012 | 2_1:-25401968 | Msa0202780:CDS |
| TTATTGAATGTTCTTGGCTT+TGG | 0.342648 | 2_1:-25403040 | Msa0202780:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 2_1:+25400386 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 2_1:-25399852 | Msa0202780:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 2_1:-25399814 | Msa0202780:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 2_1:-25399803 | Msa0202780:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 2_1:-25399853 | Msa0202780:CDS |
| CTATAGGAAGTCATGACTTC+AGG | 0.393524 | 2_1:+25400210 | None:intergenic |
| TAATTAGCTCGGTCATACTA+TGG | 0.394026 | 2_1:+25399506 | None:intergenic |
| TAGGAGCTTGAATAAAATTA+CGG | 0.401902 | 2_1:-25399422 | Msa0202780:three_prime_UTR |
| CTCTTCGTTGGATATACTAT+AGG | 0.410828 | 2_1:-25402829 | Msa0202780:CDS |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 2_1:+25399610 | None:intergenic |
| CTAGAAAACGTTTGAGAGAT+AGG | 0.426033 | 2_1:-25403476 | Msa0202780:CDS |
| AAACAGCCATGTACATAGAT+AGG | 0.426768 | 2_1:+25400320 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 2_1:+25400369 | None:intergenic |
| GATTGTTTGGCGTTGCAGTT+TGG | 0.439343 | 2_1:-25401955 | Msa0202780:CDS |
| TTGTCTTTGTTCCTCTTCGT+TGG | 0.441600 | 2_1:-25402841 | Msa0202780:CDS |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 2_1:+25400393 | None:intergenic |
| GATGATAAAGTTAAAATGAT+AGG | 0.455047 | 2_1:-25399584 | Msa0202780:three_prime_UTR |
| CCACAAGGTGTAAACTACTA+AGG | 0.460985 | 2_1:+25400290 | None:intergenic |
| CTGAAGTCATGACTTCCTAT+AGG | 0.461256 | 2_1:-25400209 | Msa0202780:intron |
| TATACTATAGGTTCAAGAAA+TGG | 0.465673 | 2_1:-25402817 | Msa0202780:CDS |
| CAACCTCAACTAGTAATACT+AGG | 0.473071 | 2_1:+25399355 | None:intergenic |
| TATGGAAATTAATCCATGTT+GGG | 0.479933 | 2_1:+25399524 | None:intergenic |
| GTTGGAAGTTATGCCTAGGC+AGG | 0.486116 | 2_1:-25399674 | Msa0202780:CDS |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 2_1:+25399757 | None:intergenic |
| TTGAATGTTCTTGGCTTTGG+TGG | 0.494279 | 2_1:-25403037 | Msa0202780:CDS |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 2_1:-25399862 | Msa0202780:CDS |
| ATAACATACCTGGTAAAAGA+TGG | 0.511064 | 2_1:+25401895 | None:intergenic |
| CCTTAGTAGTTTACACCTTG+TGG | 0.519157 | 2_1:-25400290 | Msa0202780:CDS |
| TTTCAACAAAAGCTACACTT+AGG | 0.522421 | 2_1:-25399441 | Msa0202780:three_prime_UTR |
| GAAATGGCATTACTATCTCC+TGG | 0.527397 | 2_1:-25402801 | Msa0202780:intron |
| GAATGGAGCAAGCTTTCTGT+TGG | 0.533472 | 2_1:-25399692 | Msa0202780:CDS |
| GTCATTAGTATAAATGAATG+TGG | 0.535615 | 2_1:+25399269 | None:intergenic |
| TAGAACAAACAATACACTAA+AGG | 0.547165 | 2_1:+25402866 | None:intergenic |
| ACTCATTGAACAACGTTGGA+TGG | 0.548800 | 2_1:+25403554 | None:intergenic |
| GCCTAGGCAGGTTATTCTCA+AGG | 0.551205 | 2_1:-25399662 | Msa0202780:CDS |
| CTATGGAAATTAATCCATGT+TGG | 0.551310 | 2_1:+25399523 | None:intergenic |
| TCCTTGAGAATAACCTGCCT+AGG | 0.556675 | 2_1:+25399661 | None:intergenic |
| TACACAAAGTATAATTAGCT+CGG | 0.565423 | 2_1:+25399495 | None:intergenic |
| CACAAGGTGTAAACTACTAA+GGG | 0.565958 | 2_1:+25400291 | None:intergenic |
| ACAATCAATGCCCATGCTAA+CGG | 0.568226 | 2_1:+25401972 | None:intergenic |
| TCACCTAGTATTACTAGTTG+AGG | 0.568637 | 2_1:-25399358 | Msa0202780:three_prime_UTR |
| ATAAATCCTATCTATGTACA+TGG | 0.579385 | 2_1:-25400326 | Msa0202780:CDS |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 2_1:-25399709 | Msa0202780:CDS |
| TACACTAAAGGAACATCTTG+TGG | 0.584381 | 2_1:+25402878 | None:intergenic |
| CTTGTCCTATAAATTGTCAG+TGG | 0.585464 | 2_1:-25399749 | Msa0202780:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 2_1:+25399821 | None:intergenic |
| TTCTGTTGGAAGTTATGCCT+AGG | 0.592892 | 2_1:-25399678 | Msa0202780:CDS |
| TCAATGTCTTACGCCGACAA+CGG | 0.593431 | 2_1:-25400245 | Msa0202780:CDS |
| CTCAGGATTCCACCATCGAA+TGG | 0.598119 | 2_1:+25400410 | None:intergenic |
| CGCTGCAGAAGGTTCGATGT+CGG | 0.598180 | 2_1:+25403500 | None:intergenic |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 2_1:-25400362 | Msa0202780:CDS |
| ACATACTCATTGAACAACGT+TGG | 0.605939 | 2_1:+25403550 | None:intergenic |
| CGGTGAGTTTGACAAAACTT+CGG | 0.607526 | 2_1:+25399394 | None:intergenic |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 2_1:-25399791 | Msa0202780:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 2_1:-25399851 | Msa0202780:CDS |
| TAGGTGAATGTTTGTAATGA+CGG | 0.618803 | 2_1:+25399374 | None:intergenic |
| ACGTTTGAGAGATAGGTCAA+AGG | 0.620864 | 2_1:-25403469 | Msa0202780:intron |
| ATAAGGCCATGTAACTCTTG+CGG | 0.620960 | 2_1:+25400356 | None:intergenic |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 2_1:-25399873 | Msa0202780:CDS |
| GATGTCTCTGAGTCCCAACA+TGG | 0.627389 | 2_1:-25399537 | Msa0202780:three_prime_UTR |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 2_1:-25400384 | Msa0202780:CDS |
| CTATAGTATATCCAACGAAG+AGG | 0.638221 | 2_1:+25402830 | None:intergenic |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 2_1:-25400385 | Msa0202780:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 2_1:-25399876 | Msa0202780:CDS |
| ACATGAAAGTTTCATCAACA+AGG | 0.659659 | 2_1:-25403266 | Msa0202780:intron |
| GGCGTAAGACATTGACAATG+AGG | 0.659908 | 2_1:+25400253 | None:intergenic |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 2_1:-25399714 | Msa0202780:CDS |
| AAAATGTTATTATGATTACG+TGG | 0.685134 | 2_1:+25403652 | None:intergenic |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 2_1:-25399800 | Msa0202780:CDS |
| GTAGTATAGAATCTGCCACA+AGG | 0.687698 | 2_1:+25400275 | None:intergenic |
| CGACATCGAACCTTCTGCAG+CGG | 0.727280 | 2_1:-25403499 | Msa0202780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCATTTTTTTTTTTTTG+TGG | - | chr2_1:25399579-25399598 | Msa0202780:three_prime_UTR | 10.0% |
| !! | AAATGAATATTAAATATTGT+AGG | + | chr2_1:25401131-25401150 | None:intergenic | 10.0% |
| !!! | TTATTAATCTTACATTTTTT+AGG | - | chr2_1:25403084-25403103 | Msa0202780:intron | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | - | chr2_1:25403085-25403104 | Msa0202780:intron | 10.0% |
| !!! | TCATAATAACATTTTTTTTC+TGG | - | chr2_1:25399355-25399374 | Msa0202780:three_prime_UTR | 15.0% |
| !! | TAAAAAACATATATTATGTG+TGG | + | chr2_1:25399624-25399643 | None:intergenic | 15.0% |
| !!! | TCTATATTTTTCATCATTTA+TGG | - | chr2_1:25399849-25399868 | Msa0202780:CDS | 15.0% |
| !!! | TTTTATTTTCTTTTTCTTTC+AGG | - | chr2_1:25399928-25399947 | Msa0202780:intron | 15.0% |
| !! | ACAGAATTAAAACAAAAATT+AGG | + | chr2_1:25400082-25400101 | None:intergenic | 15.0% |
| !! | AAGTTTATAAGAAAACAAAA+AGG | - | chr2_1:25401666-25401685 | Msa0202780:intron | 15.0% |
| !!! | CAAATATTTTGCTTTAATAT+CGG | - | chr2_1:25401812-25401831 | Msa0202780:intron | 15.0% |
| !! | GGTATAATGAATATTATAAA+TGG | + | chr2_1:25402532-25402551 | None:intergenic | 15.0% |
| !! | TATACAAAAATCCAATTTCA+TGG | - | chr2_1:25399248-25399267 | Msa0202780:three_prime_UTR | 20.0% |
| !! | AAAATGTTATTATGATTACG+TGG | + | chr2_1:25399350-25399369 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATTTTTGTGATG+TGG | - | chr2_1:25399635-25399654 | Msa0202780:CDS | 20.0% |
| !!! | GTTTTTTATTTTTGTGATGT+GGG | - | chr2_1:25399636-25399655 | Msa0202780:CDS | 20.0% |
| !!! | TTTGTTTTTGTCTCAAATAA+AGG | - | chr2_1:25399664-25399683 | Msa0202780:CDS | 20.0% |
| !!! | TATTACTGTATTAGTTTCAT+CGG | - | chr2_1:25400504-25400523 | Msa0202780:intron | 20.0% |
| !!! | ATTTTTAACTGTCAAAAACA+TGG | - | chr2_1:25400596-25400615 | Msa0202780:intron | 20.0% |
| !!! | ATTTATTTAAGTGTGGTTTT+AGG | - | chr2_1:25401002-25401021 | Msa0202780:intron | 20.0% |
| !!! | TTTATTTAAGTGTGGTTTTA+GGG | - | chr2_1:25401003-25401022 | Msa0202780:intron | 20.0% |
| !!! | ATAAACTTGTTCAAAATCAT+TGG | - | chr2_1:25401164-25401183 | Msa0202780:intron | 20.0% |
| !!! | TTTTCCCATTGTAAATTTAT+AGG | - | chr2_1:25401304-25401323 | Msa0202780:intron | 20.0% |
| !! | GAATCCTATAAATTTACAAT+GGG | + | chr2_1:25401311-25401330 | None:intergenic | 20.0% |
| !! | AGAATCCTATAAATTTACAA+TGG | + | chr2_1:25401312-25401331 | None:intergenic | 20.0% |
| !!! | AAAAAAAATGGATTAAGCTA+AGG | + | chr2_1:25401355-25401374 | None:intergenic | 20.0% |
| !! | AAAGCAAAATATTTGTATGT+TGG | + | chr2_1:25401807-25401826 | None:intergenic | 20.0% |
| !!! | GATCAAATTTTTCCATTTTA+AGG | + | chr2_1:25402123-25402142 | None:intergenic | 20.0% |
| !! | ATCAAATATTGTTCATGTTT+AGG | + | chr2_1:25402443-25402462 | None:intergenic | 20.0% |
| !! | TGGAGAAAAAAAATTCATTA+AGG | + | chr2_1:25402553-25402572 | None:intergenic | 20.0% |
| !!! | TTAATGAATTTTTTTTCTCC+AGG | - | chr2_1:25402552-25402571 | Msa0202780:intron | 20.0% |
| !! | TAGGATTTATCTTCAATATA+AGG | + | chr2_1:25402663-25402682 | None:intergenic | 20.0% |
| !!! | GAAGGTTTTAAATAATAGTT+AGG | + | chr2_1:25403000-25403019 | None:intergenic | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | + | chr2_1:25403245-25403264 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | + | chr2_1:25403392-25403411 | None:intergenic | 20.0% |
| !! | GATGATAAAGTTAAAATGAT+AGG | - | chr2_1:25403415-25403434 | Msa0202780:intron | 20.0% |
| !!! | AGTTTTATAATGGTTTTGAA+TGG | - | chr2_1:25403668-25403687 | Msa0202780:five_prime_UTR | 20.0% |
| !!! | GTTTTATAATGGTTTTGAAT+GGG | - | chr2_1:25403669-25403688 | Msa0202780:five_prime_UTR | 20.0% |
| ! | ATTACGTGGAATAAGAAAAT+TGG | + | chr2_1:25399336-25399355 | None:intergenic | 25.0% |
| !!! | TTTGCAGAAACTGTTTTTTA+AGG | + | chr2_1:25399391-25399410 | None:intergenic | 25.0% |
| ! | ACTCATTTATTGAATGTTCT+TGG | - | chr2_1:25399953-25399972 | Msa0202780:intron | 25.0% |
| ! | ATCTATCATTCTAAGTGATT+CGG | - | chr2_1:25400020-25400039 | Msa0202780:intron | 25.0% |
| ! | TAGAACAAACAATACACTAA+AGG | + | chr2_1:25400136-25400155 | None:intergenic | 25.0% |
| ! | TATACTATAGGTTCAAGAAA+TGG | - | chr2_1:25400182-25400201 | Msa0202780:intron | 25.0% |
| ! | ATGAAACTATTAATTGCTTC+TGG | - | chr2_1:25400272-25400291 | Msa0202780:CDS | 25.0% |
| ! | TATCATTGATCTAGATTAGA+CGG | + | chr2_1:25400668-25400687 | None:intergenic | 25.0% |
| ! | GTAAACCAAAAAGATTGTAT+TGG | + | chr2_1:25400860-25400879 | None:intergenic | 25.0% |
| ! | CATTCTTTGGATAAAAAAGA+AGG | + | chr2_1:25400882-25400901 | None:intergenic | 25.0% |
| ! | ATGTGTGATTTATTTAAGTG+TGG | - | chr2_1:25400995-25401014 | Msa0202780:intron | 25.0% |
| ! | ATATGCATTCGATTCAATAT+TGG | - | chr2_1:25401213-25401232 | Msa0202780:intron | 25.0% |
| !! | AAATTTATAGGATTCTAGAG+TGG | - | chr2_1:25401316-25401335 | Msa0202780:intron | 25.0% |
| ! | AGATTTACACAAATACAGTA+AGG | + | chr2_1:25401630-25401649 | None:intergenic | 25.0% |
| ! | TGTTGGATGATATTAATTGA+AGG | + | chr2_1:25401790-25401809 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCTATTTATGC+TGG | - | chr2_1:25401870-25401889 | Msa0202780:intron | 25.0% |
| !!! | AACTCTCTTTTTGATAACAT+TGG | - | chr2_1:25402050-25402069 | Msa0202780:intron | 25.0% |
| !!! | ACATTGTTTTAGCCTTAAAA+TGG | - | chr2_1:25402108-25402127 | Msa0202780:CDS | 25.0% |
| ! | TTTACATGTTGCAGTATATT+TGG | - | chr2_1:25402170-25402189 | Msa0202780:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | + | chr2_1:25402256-25402275 | None:intergenic | 25.0% |
| ! | ATGAAGAATTAGAACTTCTA+CGG | - | chr2_1:25402412-25402431 | Msa0202780:intron | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | - | chr2_1:25402673-25402692 | Msa0202780:intron | 25.0% |
| ! | TAGACCAATAGAATTTCAAA+AGG | - | chr2_1:25402854-25402873 | Msa0202780:CDS | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | - | chr2_1:25403185-25403204 | Msa0202780:intron | 25.0% |
| ! | AAAAACCACTGACAATTTAT+AGG | + | chr2_1:25403258-25403277 | None:intergenic | 25.0% |
| ! | TATGGAAATTAATCCATGTT+GGG | + | chr2_1:25403478-25403497 | None:intergenic | 25.0% |
| ! | TACACAAAGTATAATTAGCT+CGG | + | chr2_1:25403507-25403526 | None:intergenic | 25.0% |
| ! | TAGGAGCTTGAATAAAATTA+CGG | - | chr2_1:25403577-25403596 | Msa0202780:five_prime_UTR | 25.0% |
| !!! | TTGAGGTTGTAGTTTTATAA+TGG | - | chr2_1:25403658-25403677 | Msa0202780:five_prime_UTR | 25.0% |
| ! | GAAAAACTGAGAATATACAT+TGG | + | chr2_1:25403700-25403719 | None:intergenic | 25.0% |
| ! | GTCATTAGTATAAATGAATG+TGG | + | chr2_1:25403733-25403752 | None:intergenic | 25.0% |
| !! | TTAGCTTTACACCATGAAAT+TGG | + | chr2_1:25399262-25399281 | None:intergenic | 30.0% |
| !!! | AACTGTTTTTTAAGGAAGGA+AGG | + | chr2_1:25399383-25399402 | None:intergenic | 30.0% |
| !!! | CAGAAACTGTTTTTTAAGGA+AGG | + | chr2_1:25399387-25399406 | None:intergenic | 30.0% |
| ! | GTTTTTGTCTCAAATAAAGG+AGG | - | chr2_1:25399667-25399686 | Msa0202780:CDS | 30.0% |
| ACATGAAAGTTTCATCAACA+AGG | - | chr2_1:25399733-25399752 | Msa0202780:CDS | 30.0% | |
| !!! | CAAGGTATGTTTTTTATGTC+TGG | - | chr2_1:25399751-25399770 | Msa0202780:CDS | 30.0% |
| TTTCATCATTTATGGCCATT+TGG | - | chr2_1:25399857-25399876 | Msa0202780:CDS | 30.0% | |
| TTCATCATTTATGGCCATTT+GGG | - | chr2_1:25399858-25399877 | Msa0202780:CDS | 30.0% | |
| TCAATATTCACATACCCAAA+TGG | + | chr2_1:25399875-25399894 | None:intergenic | 30.0% | |
| TTATTGAATGTTCTTGGCTT+TGG | - | chr2_1:25399959-25399978 | Msa0202780:intron | 30.0% | |
| TCTATCATTCTAAGTGATTC+GGG | - | chr2_1:25400021-25400040 | Msa0202780:intron | 30.0% | |
| !! | TCTGTGTTATTCTCTTTTAC+AGG | - | chr2_1:25400097-25400116 | Msa0202780:intron | 30.0% |
| CTGAGATATGTTAATTTACC+AGG | + | chr2_1:25400219-25400238 | None:intergenic | 30.0% | |
| ! | TGTAATCACTAGTGTCATTA+TGG | - | chr2_1:25400408-25400427 | Msa0202780:CDS | 30.0% |
| AACTGTCAAAAACATGGAAT+CGG | - | chr2_1:25400602-25400621 | Msa0202780:intron | 30.0% | |
| ! | TTATGATAATGACAGCGATA+AGG | + | chr2_1:25400734-25400753 | None:intergenic | 30.0% |
| TTATCGCTGTCATTATCATA+AGG | - | chr2_1:25400733-25400752 | Msa0202780:intron | 30.0% | |
| AACTATTGTTCATGTGTTTC+AGG | - | chr2_1:25400819-25400838 | Msa0202780:intron | 30.0% | |
| ! | CTATGCCAATACAATCTTTT+TGG | - | chr2_1:25400852-25400871 | Msa0202780:intron | 30.0% |
| AGAAAAAGCTTCTCATTCTT+TGG | + | chr2_1:25400895-25400914 | None:intergenic | 30.0% | |
| !! | AAAGAATGAGAAGCTTTTTC+TGG | - | chr2_1:25400894-25400913 | Msa0202780:intron | 30.0% |
| ATAACATACCTGGTAAAAGA+TGG | + | chr2_1:25401107-25401126 | None:intergenic | 30.0% | |
| TATTGTAGGTATAACATACC+TGG | + | chr2_1:25401117-25401136 | None:intergenic | 30.0% | |
| TTGGCTTCTACTATCATTAT+TGG | - | chr2_1:25401183-25401202 | Msa0202780:intron | 30.0% | |
| ! | TTCATCAGAGATTTGTTTCA+CGG | + | chr2_1:25401245-25401264 | None:intergenic | 30.0% |
| !!! | ATGCCAAAGAAGTTTTAAGA+AGG | - | chr2_1:25401438-25401457 | Msa0202780:intron | 30.0% |
| TCTCCTTCTTAAAACTTCTT+TGG | + | chr2_1:25401444-25401463 | None:intergenic | 30.0% | |
| ! | GTCTTATATGTTAGTTTCCA+GGG | + | chr2_1:25401480-25401499 | None:intergenic | 30.0% |
| ! | TGTCTTATATGTTAGTTTCC+AGG | + | chr2_1:25401481-25401500 | None:intergenic | 30.0% |
| GGAAACTAACATATAAGACA+AGG | - | chr2_1:25401481-25401500 | Msa0202780:intron | 30.0% | |
| ! | TCGAAGTTGATCACATATAT+GGG | + | chr2_1:25401533-25401552 | None:intergenic | 30.0% |
| ! | TTCGAAGTTGATCACATATA+TGG | + | chr2_1:25401534-25401553 | None:intergenic | 30.0% |
| ! | ACTGGTAGTTTTCATTTCTT+TGG | - | chr2_1:25401940-25401959 | Msa0202780:CDS | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | - | chr2_1:25402139-25402158 | Msa0202780:CDS | 30.0% | |
| TGTCAACAAACAATAGGATT+TGG | + | chr2_1:25402227-25402246 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | + | chr2_1:25402292-25402311 | None:intergenic | 30.0% | |
| TTGCATTACTACTTATCTGT+CGG | - | chr2_1:25402292-25402311 | Msa0202780:intron | 30.0% | |
| ATATTGTCAAGACTCCTAAA+TGG | + | chr2_1:25402326-25402345 | None:intergenic | 30.0% | |
| AATTGTACAGCATGAAACAT+GGG | + | chr2_1:25402359-25402378 | None:intergenic | 30.0% | |
| TAATTGTACAGCATGAAACA+TGG | + | chr2_1:25402360-25402379 | None:intergenic | 30.0% | |
| GATAGATGTTACCATTAGAA+TGG | - | chr2_1:25402460-25402479 | Msa0202780:intron | 30.0% | |
| CTATCACAAATCCATTCTAA+TGG | + | chr2_1:25402474-25402493 | None:intergenic | 30.0% | |
| !!! | GAATTTTTTTTCTCCAGGAT+TGG | - | chr2_1:25402557-25402576 | Msa0202780:intron | 30.0% |
| ACCAATAGAATTTCAAAAGG+CGG | - | chr2_1:25402857-25402876 | Msa0202780:CDS | 30.0% | |
| AAACACCTACTGTACAAAAA+CGG | + | chr2_1:25403030-25403049 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | + | chr2_1:25403181-25403200 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | - | chr2_1:25403196-25403215 | Msa0202780:intron | 30.0% | |
| !! | AGTGGTTTTTCAAATACTGA+AGG | - | chr2_1:25403268-25403287 | Msa0202780:CDS | 30.0% |
| CTATGGAAATTAATCCATGT+TGG | + | chr2_1:25403479-25403498 | None:intergenic | 30.0% | |
| ! | TGTAGCTTTTGTTGAAATCA+CGG | + | chr2_1:25403555-25403574 | None:intergenic | 30.0% |
| TTTCAACAAAAGCTACACTT+AGG | - | chr2_1:25403558-25403577 | Msa0202780:exon | 30.0% | |
| TAGGTGAATGTTTGTAATGA+CGG | + | chr2_1:25403628-25403647 | None:intergenic | 30.0% | |
| ! | CATCACCATAGTTTTTGTTC+TGG | - | chr2_1:25399420-25399439 | Msa0202780:three_prime_UTR | 35.0% |
| TGGATCCAGAACAAAAACTA+TGG | + | chr2_1:25399428-25399447 | None:intergenic | 35.0% | |
| ACATACTCATTGAACAACGT+TGG | + | chr2_1:25399452-25399471 | None:intergenic | 35.0% | |
| CTAGAAAACGTTTGAGAGAT+AGG | - | chr2_1:25399523-25399542 | Msa0202780:three_prime_UTR | 35.0% | |
| ACGTCTTCAATCAGAAATGT+CGG | - | chr2_1:25399776-25399795 | Msa0202780:CDS | 35.0% | |
| !! | GGTGGTTTTTGTTTCATCTT+AGG | - | chr2_1:25399980-25399999 | Msa0202780:intron | 35.0% |
| CTATCATTCTAAGTGATTCG+GGG | - | chr2_1:25400022-25400041 | Msa0202780:intron | 35.0% | |
| TACACTAAAGGAACATCTTG+TGG | + | chr2_1:25400124-25400143 | None:intergenic | 35.0% | |
| CTATAGTATATCCAACGAAG+AGG | + | chr2_1:25400172-25400191 | None:intergenic | 35.0% | |
| CTCTTCGTTGGATATACTAT+AGG | - | chr2_1:25400170-25400189 | Msa0202780:intron | 35.0% | |
| ATCTGAACACATGTCGTATA+TGG | + | chr2_1:25400358-25400377 | None:intergenic | 35.0% | |
| ACCGGCATTATGAAGATAAT+AGG | - | chr2_1:25400378-25400397 | Msa0202780:CDS | 35.0% | |
| CCCTATTATCTTCATAATGC+CGG | + | chr2_1:25400382-25400401 | None:intergenic | 35.0% | |
| CCGGCATTATGAAGATAATA+GGG | - | chr2_1:25400379-25400398 | Msa0202780:CDS | 35.0% | |
| !! | TGTCATTATGGTGTTGGTAT+CGG | - | chr2_1:25400420-25400439 | Msa0202780:CDS | 35.0% |
| ! | TCGGCATTCTAGCATAATTT+TGG | - | chr2_1:25400523-25400542 | Msa0202780:intron | 35.0% |
| !! | GGTCATTTTGTAGCATGAAT+AGG | - | chr2_1:25400544-25400563 | Msa0202780:intron | 35.0% |
| ! | TGAATAGGCATTTTGTGAGA+AGG | - | chr2_1:25400559-25400578 | Msa0202780:intron | 35.0% |
| ! | GAATAGGCATTTTGTGAGAA+GGG | - | chr2_1:25400560-25400579 | Msa0202780:intron | 35.0% |
| CATGTTACACATTTACTGCA+GGG | + | chr2_1:25400631-25400650 | None:intergenic | 35.0% | |
| GCTAGGATGTCAAATTACTA+AGG | + | chr2_1:25400953-25400972 | None:intergenic | 35.0% | |
| ! | GTTCTTATCCATCTTTTACC+AGG | - | chr2_1:25401096-25401115 | Msa0202780:intron | 35.0% |
| !!! | AAGTTTTAAGAAGGAGATCC+AGG | - | chr2_1:25401447-25401466 | Msa0202780:intron | 35.0% |
| !!! | AGTTTTAAGAAGGAGATCCA+GGG | - | chr2_1:25401448-25401467 | Msa0202780:intron | 35.0% |
| ! | ATATGTTAGTTTCCAGGGTT+CGG | + | chr2_1:25401475-25401494 | None:intergenic | 35.0% |
| !!! | TTGATCACAAGTTTTGAAGC+TGG | - | chr2_1:25401585-25401604 | Msa0202780:intron | 35.0% |
| AACAAAAAGGCTAAAGATGC+AGG | - | chr2_1:25401679-25401698 | Msa0202780:intron | 35.0% | |
| AATGAAAACTACCAGTGCAT+TGG | + | chr2_1:25401936-25401955 | None:intergenic | 35.0% | |
| !! | TTTGGTGTTGATTTCAACCA+TGG | - | chr2_1:25401958-25401977 | Msa0202780:CDS | 35.0% |
| TTGTCAAACTCTCGAGTTTA+CGG | - | chr2_1:25401993-25402012 | Msa0202780:intron | 35.0% | |
| GTTGCAGTATATTTGGTATC+TGG | - | chr2_1:25402177-25402196 | Msa0202780:intron | 35.0% | |
| TTGGTTCAACAACTAGTAGT+AGG | + | chr2_1:25402208-25402227 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | + | chr2_1:25402293-25402312 | None:intergenic | 35.0% | |
| TGTCGGATGTAAAACCATTT+AGG | - | chr2_1:25402309-25402328 | Msa0202780:intron | 35.0% | |
| ATTGTACAGCATGAAACATG+GGG | + | chr2_1:25402358-25402377 | None:intergenic | 35.0% | |
| GGATGCATAAAGTAACGTAA+AGG | + | chr2_1:25402511-25402530 | None:intergenic | 35.0% | |
| ATGGTAAAGAAAACCAATCC+TGG | + | chr2_1:25402573-25402592 | None:intergenic | 35.0% | |
| ! | TGGTTTTCTTTACCATTCGA+TGG | - | chr2_1:25402577-25402596 | Msa0202780:intron | 35.0% |
| ! | TTTTCTTTACCATTCGATGG+TGG | - | chr2_1:25402580-25402599 | Msa0202780:intron | 35.0% |
| AAACAGCCATGTACATAGAT+AGG | + | chr2_1:25402682-25402701 | None:intergenic | 35.0% | |
| CACAAGGTGTAAACTACTAA+GGG | + | chr2_1:25402711-25402730 | None:intergenic | 35.0% | |
| GATCTCTTAAAAACCGTTGT+CGG | + | chr2_1:25402770-25402789 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | + | chr2_1:25402808-25402827 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | - | chr2_1:25402811-25402830 | Msa0202780:CDS | 35.0% | |
| ! | TTGGTCTAAAGCAAACAAAC+TGG | + | chr2_1:25402842-25402861 | None:intergenic | 35.0% |
| !!! | ACCGCCTTTTGAAATTCTAT+TGG | + | chr2_1:25402861-25402880 | None:intergenic | 35.0% |
| ACTTGACCTTATAACCTCAA+GGG | + | chr2_1:25402947-25402966 | None:intergenic | 35.0% | |
| AACTTGACCTTATAACCTCA+AGG | + | chr2_1:25402948-25402967 | None:intergenic | 35.0% | |
| CTCAGAAAGCAAATAACATG+TGG | - | chr2_1:25403123-25403142 | Msa0202780:intron | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | - | chr2_1:25403126-25403145 | Msa0202780:intron | 35.0% | |
| CTTGTCCTATAAATTGTCAG+TGG | - | chr2_1:25403250-25403269 | Msa0202780:intron | 35.0% | |
| TAATTAGCTCGGTCATACTA+TGG | + | chr2_1:25403496-25403515 | None:intergenic | 35.0% | |
| TCACCTAGTATTACTAGTTG+AGG | - | chr2_1:25403641-25403660 | Msa0202780:five_prime_UTR | 35.0% | |
| CAACCTCAACTAGTAATACT+AGG | + | chr2_1:25403647-25403666 | None:intergenic | 35.0% | |
| ACTCATTGAACAACGTTGGA+TGG | + | chr2_1:25399448-25399467 | None:intergenic | 40.0% | |
| ACGTTTGAGAGATAGGTCAA+AGG | - | chr2_1:25399530-25399549 | Msa0202780:three_prime_UTR | 40.0% | |
| !! | TTGAATGTTCTTGGCTTTGG+TGG | - | chr2_1:25399962-25399981 | Msa0202780:intron | 40.0% |
| TTGTCTTTGTTCCTCTTCGT+TGG | - | chr2_1:25400158-25400177 | Msa0202780:intron | 40.0% | |
| GAAATGGCATTACTATCTCC+TGG | - | chr2_1:25400198-25400217 | Msa0202780:intron | 40.0% | |
| TACGACATGTGTTCAGATAC+CGG | - | chr2_1:25400360-25400379 | Msa0202780:CDS | 40.0% | |
| ! | CACTAGTGTCATTATGGTGT+TGG | - | chr2_1:25400414-25400433 | Msa0202780:CDS | 40.0% |
| CCATGTTACACATTTACTGC+AGG | + | chr2_1:25400632-25400651 | None:intergenic | 40.0% | |
| CCTGCAGTAAATGTGTAACA+TGG | - | chr2_1:25400629-25400648 | Msa0202780:intron | 40.0% | |
| ACAATCAATGCCCATGCTAA+CGG | + | chr2_1:25401030-25401049 | None:intergenic | 40.0% | |
| !! | TAGCATGGGCATTGATTGTT+TGG | - | chr2_1:25401031-25401050 | Msa0202780:intron | 40.0% |
| ! | TCTAGAGTGGTATCTAGCAT+TGG | - | chr2_1:25401329-25401348 | Msa0202780:intron | 40.0% |
| AGATATTTGTCATCCCACGT+AGG | - | chr2_1:25401392-25401411 | Msa0202780:intron | 40.0% | |
| !!! | CATTGGTGGTGTTTTTTGTG+GGG | + | chr2_1:25401919-25401938 | None:intergenic | 40.0% |
| !!! | GCATTGGTGGTGTTTTTTGT+GGG | + | chr2_1:25401920-25401939 | None:intergenic | 40.0% |
| !!! | TGCATTGGTGGTGTTTTTTG+TGG | + | chr2_1:25401921-25401940 | None:intergenic | 40.0% |
| AAAAAACACCACCAATGCAC+TGG | - | chr2_1:25401922-25401941 | Msa0202780:CDS | 40.0% | |
| TTCAACCATGGTAGTAGTCA+TGG | - | chr2_1:25401970-25401989 | Msa0202780:CDS | 40.0% | |
| ACTCTCGAGTTTACGGTTAT+AGG | - | chr2_1:25402000-25402019 | Msa0202780:intron | 40.0% | |
| CAGGTGTGTCAACAAACAAT+AGG | + | chr2_1:25402233-25402252 | None:intergenic | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | + | chr2_1:25402252-25402271 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | + | chr2_1:25402646-25402665 | None:intergenic | 40.0% | |
| ! | TCTATGTACATGGCTGTTTC+TGG | - | chr2_1:25402683-25402702 | Msa0202780:intron | 40.0% |
| CCACAAGGTGTAAACTACTA+AGG | + | chr2_1:25402712-25402731 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | - | chr2_1:25402709-25402728 | Msa0202780:intron | 40.0% | |
| GTAGTATAGAATCTGCCACA+AGG | + | chr2_1:25402727-25402746 | None:intergenic | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | + | chr2_1:25402792-25402811 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | - | chr2_1:25402790-25402809 | Msa0202780:intron | 40.0% | |
| TACAAAAACGGTCTGAAGGA+AGG | + | chr2_1:25403018-25403037 | None:intergenic | 40.0% | |
| ACTGTACAAAAACGGTCTGA+AGG | + | chr2_1:25403022-25403041 | None:intergenic | 40.0% | |
| !! | TCAGACCGTTTTTGTACAGT+AGG | - | chr2_1:25403022-25403041 | Msa0202780:CDS | 40.0% |
| !!! | GTACAGTAGGTGTTTTAGAG+TGG | - | chr2_1:25403035-25403054 | Msa0202780:CDS | 40.0% |
| TCTTCAAGGAATGTTTACGG+TGG | - | chr2_1:25403199-25403218 | Msa0202780:intron | 40.0% | |
| TTCTGTTGGAAGTTATGCCT+AGG | - | chr2_1:25403321-25403340 | Msa0202780:intron | 40.0% | |
| CGGTGAGTTTGACAAAACTT+CGG | + | chr2_1:25403608-25403627 | None:intergenic | 40.0% | |
| TATCGGATACCGACATGTGT+CGG | - | chr2_1:25400437-25400456 | Msa0202780:intron | 45.0% | |
| TCCAAGTATCCGACACATGT+CGG | + | chr2_1:25400449-25400468 | None:intergenic | 45.0% | |
| TGGACACGTCTACGATATGA+AGG | - | chr2_1:25400465-25400484 | Msa0202780:intron | 45.0% | |
| GGACACGTCTACGATATGAA+GGG | - | chr2_1:25400466-25400485 | Msa0202780:intron | 45.0% | |
| CAGTAATACCTAGCTAGCAC+CGG | + | chr2_1:25400492-25400511 | None:intergenic | 45.0% | |
| !! | GGTCTGCTTTTCATTTGCTG+AGG | - | chr2_1:25400915-25400934 | Msa0202780:intron | 45.0% |
| TTGACATCCTAGCATGCGAA+TGG | - | chr2_1:25400960-25400979 | Msa0202780:intron | 45.0% | |
| CAATGAACCATTCGCATGCT+AGG | + | chr2_1:25400970-25400989 | None:intergenic | 45.0% | |
| CTAGCATGCGAATGGTTCAT+TGG | - | chr2_1:25400968-25400987 | Msa0202780:intron | 45.0% | |
| !!! | GTTTTAGGGTCCGTTAGCAT+GGG | - | chr2_1:25401017-25401036 | Msa0202780:intron | 45.0% |
| GATTGTTTGGCGTTGCAGTT+TGG | - | chr2_1:25401044-25401063 | Msa0202780:intron | 45.0% | |
| GAAAACTACCAGTGCATTGG+TGG | + | chr2_1:25401933-25401952 | None:intergenic | 45.0% | |
| GACAACCATGACTACTACCA+TGG | + | chr2_1:25401978-25401997 | None:intergenic | 45.0% | |
| ! | TTGACACACCTGCCTGATTT+TGG | - | chr2_1:25402241-25402260 | Msa0202780:intron | 45.0% |
| TTAGAAGCTATGCGACCAGA+GGG | - | chr2_1:25402615-25402634 | Msa0202780:intron | 45.0% | |
| GGCGTAAGACATTGACAATG+AGG | + | chr2_1:25402749-25402768 | None:intergenic | 45.0% | |
| TCAATGTCTTACGCCGACAA+CGG | - | chr2_1:25402754-25402773 | Msa0202780:intron | 45.0% | |
| ! | TAGTGCCACTACAGCTAATG+CGG | + | chr2_1:25402902-25402921 | None:intergenic | 45.0% |
| TGTCGTCCCTTGAGGTTATA+AGG | - | chr2_1:25402938-25402957 | Msa0202780:intron | 45.0% | |
| GTCAAGTTCTTACCACCAAG+CGG | - | chr2_1:25402960-25402979 | Msa0202780:intron | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | - | chr2_1:25403208-25403227 | Msa0202780:intron | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | - | chr2_1:25403285-25403304 | Msa0202780:CDS | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | - | chr2_1:25403290-25403309 | Msa0202780:CDS | 45.0% | |
| GAATGGAGCAAGCTTTCTGT+TGG | - | chr2_1:25403307-25403326 | Msa0202780:CDS | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | + | chr2_1:25403341-25403360 | None:intergenic | 45.0% | |
| !!! | GTTTTTTTATTTATATTTTT+TGG | - | chr2_1:25399809-25399828 | Msa0202780:CDS | 5.0% |
| !! | TATTTGAAAAAAAAAAAAAA+TGG | + | chr2_1:25401367-25401386 | None:intergenic | 5.0% |
| !!! | ACTTTTTTTTTTTTTTTTTT+AGG | - | chr2_1:25401718-25401737 | Msa0202780:intron | 5.0% |
| ACCGACATGTGTCGGATACT+TGG | - | chr2_1:25400445-25400464 | Msa0202780:intron | 50.0% | |
| ACGTCTACGATATGAAGGGC+CGG | - | chr2_1:25400470-25400489 | Msa0202780:intron | 50.0% | |
| !!! | GGTTTTAGGGTCCGTTAGCA+TGG | - | chr2_1:25401016-25401035 | Msa0202780:intron | 50.0% |
| ACCAACCAAGCTACCTACGT+GGG | + | chr2_1:25401408-25401427 | None:intergenic | 50.0% | |
| CTCAGGATTCCACCATCGAA+TGG | + | chr2_1:25402592-25402611 | None:intergenic | 50.0% | |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | + | chr2_1:25402609-25402628 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | + | chr2_1:25402616-25402635 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | - | chr2_1:25402614-25402633 | Msa0202780:intron | 50.0% | |
| TGCGGTTCCAATCACGATTG+TGG | + | chr2_1:25402884-25402903 | None:intergenic | 50.0% | |
| TGGAACCGCATTAGCTGTAG+TGG | - | chr2_1:25402894-25402913 | Msa0202780:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | - | chr2_1:25402930-25402949 | Msa0202780:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | - | chr2_1:25403137-25403156 | Msa0202780:intron | 50.0% |
| GTTGGAAGTTATGCCTAGGC+AGG | - | chr2_1:25403325-25403344 | Msa0202780:intron | 50.0% | |
| GCCTAGGCAGGTTATTCTCA+AGG | - | chr2_1:25403337-25403356 | Msa0202780:intron | 50.0% | |
| GATGTCTCTGAGTCCCAACA+TGG | - | chr2_1:25403462-25403481 | Msa0202780:intron | 50.0% | |
| CGCTGCAGAAGGTTCGATGT+CGG | + | chr2_1:25399502-25399521 | None:intergenic | 55.0% | |
| CGACATCGAACCTTCTGCAG+CGG | - | chr2_1:25399500-25399519 | Msa0202780:three_prime_UTR | 55.0% | |
| !! | CGTTTTCTAGCCGCTGCAGA+AGG | + | chr2_1:25399513-25399532 | None:intergenic | 55.0% |
| GTCATCCCACGTAGGTAGCT+TGG | - | chr2_1:25401400-25401419 | Msa0202780:intron | 55.0% | |
| TCCCACGTAGGTAGCTTGGT+TGG | - | chr2_1:25401404-25401423 | Msa0202780:intron | 55.0% | |
| CACCAACCAAGCTACCTACG+TGG | + | chr2_1:25401409-25401428 | None:intergenic | 55.0% | |
| GAGCTGCCGCAAGAGTTACA+TGG | - | chr2_1:25402637-25402656 | Msa0202780:intron | 55.0% | |
| AGGCGGTCCACAATCGTGAT+TGG | - | chr2_1:25402874-25402893 | Msa0202780:CDS | 55.0% | |
| ACCACCAAGCGGACAACTCA+TGG | - | chr2_1:25402971-25402990 | Msa0202780:intron | 55.0% | |
| TCCATGAGTTGTCCGCTTGG+TGG | + | chr2_1:25402975-25402994 | None:intergenic | 55.0% | |
| GTGTCCATGAGTTGTCCGCT+TGG | + | chr2_1:25402978-25402997 | None:intergenic | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | - | chr2_1:25403146-25403165 | Msa0202780:intron | 55.0% |
| ! | ATGAAGGGCCGGTGCTAGCT+AGG | - | chr2_1:25400481-25400500 | Msa0202780:intron | 60.0% |
| AGTTTCCAGGGTTCGGACCC+TGG | + | chr2_1:25401468-25401487 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | - | chr2_1:25403147-25403166 | Msa0202780:intron | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | - | chr2_1:25403148-25403167 | Msa0202780:intron | 60.0% |
| GAGATCCAGGGTCCGAACCC+TGG | - | chr2_1:25401460-25401479 | Msa0202780:intron | 65.0% | |
| ACTCTTGCGGCAGCTCCCTC+TGG | + | chr2_1:25402633-25402652 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 25399218 | 25403803 | 25399218 | ID=Msa0202780;Name=Msa0202780 |
| chr2_1 | mRNA | 25399218 | 25403803 | 25399218 | ID=Msa0202780-mRNA-1;Parent=Msa0202780;Name=Msa0202780-mRNA-1;_AED=0.12;_eAED=0.12;_QI=244|1|1|1|1|1|8|391|350 |
| chr2_1 | exon | 25399218 | 25399915 | 25399218 | ID=Msa0202780-mRNA-1:exon:9755;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25400210 | 25400447 | 25400210 | ID=Msa0202780-mRNA-1:exon:9754;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25401904 | 25401997 | 25401904 | ID=Msa0202780-mRNA-1:exon:9753;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25402085 | 25402180 | 25402085 | ID=Msa0202780-mRNA-1:exon:9752;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25402802 | 25402902 | 25402802 | ID=Msa0202780-mRNA-1:exon:9751;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25403014 | 25403071 | 25403014 | ID=Msa0202780-mRNA-1:exon:9750;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25403267 | 25403335 | 25403267 | ID=Msa0202780-mRNA-1:exon:9749;Parent=Msa0202780-mRNA-1 |
| chr2_1 | exon | 25403470 | 25403803 | 25403470 | ID=Msa0202780-mRNA-1:exon:9748;Parent=Msa0202780-mRNA-1 |
| chr2_1 | five_prime_UTR | 25403560 | 25403803 | 25403560 | ID=Msa0202780-mRNA-1:five_prime_utr;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25403470 | 25403559 | 25403470 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25403267 | 25403335 | 25403267 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25403014 | 25403071 | 25403014 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25402802 | 25402902 | 25402802 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25402085 | 25402180 | 25402085 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25401904 | 25401997 | 25401904 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25400210 | 25400447 | 25400210 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | CDS | 25399609 | 25399915 | 25399609 | ID=Msa0202780-mRNA-1:cds;Parent=Msa0202780-mRNA-1 |
| chr2_1 | three_prime_UTR | 25399218 | 25399608 | 25399218 | ID=Msa0202780-mRNA-1:three_prime_utr;Parent=Msa0202780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
