Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389740 | XP_013463471.2 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389740 | sp|B9RK42|GPC1_RICCO | 76.796 | 362 | 65 | 2 | 3 | 345 | 1 | 362 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389740 | A0A396J8A6 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202780 | Msa0389740 | 0.985224 | 6.622330e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389740 | MtrunA17_Chr2g0300041 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 710 |
| Msa0389740 | MtrunA17_Chr4g0070761 | 79.167 | 312 | 62 | 1 | 16 | 324 | 14 | 325 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389740 | AT5G35460.1 | 76.124 | 356 | 67 | 2 | 6 | 343 | 3 | 358 | 0.0 | 560 |
| Msa0389740 | AT5G35460.2 | 76.124 | 356 | 67 | 2 | 6 | 343 | 3 | 358 | 0.0 | 560 |
Find 78 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTACATGGCTGTTTC+TGG | 0.136807 | 3_2:-54092 | Msa0389740:CDS |
| TTAGCTTTACACCATGAAAT+TGG | 0.235186 | 3_2:+57515 | None:intergenic |
| ATTACGTGGAATAAGAAAAT+TGG | 0.248701 | 3_2:+57441 | None:intergenic |
| TAGGATTTATCTTCAATATA+AGG | 0.285131 | 3_2:+54115 | None:intergenic |
| ACTCATTTATTGAATGTTCT+TGG | 0.292836 | 3_2:-56821 | Msa0389740:CDS |
| TAGCATGGGCATTGATTGTT+TGG | 0.342012 | 3_2:-55743 | Msa0389740:CDS |
| TTATTGAATGTTCTTGGCTT+TGG | 0.342648 | 3_2:-56815 | Msa0389740:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 3_2:+54162 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 3_2:-53628 | Msa0389740:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 3_2:-53590 | Msa0389740:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 3_2:-53579 | Msa0389740:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 3_2:-53629 | Msa0389740:CDS |
| CTATAGGAAGTCATGACTTC+AGG | 0.393524 | 3_2:+53986 | None:intergenic |
| TAATTAGCTCGGTCATACTA+TGG | 0.394026 | 3_2:+53282 | None:intergenic |
| TAGGAGCTTGAATAAAATTA+CGG | 0.401902 | 3_2:-53198 | Msa0389740:three_prime_UTR |
| CTCTTCGTTGGATATACTAT+AGG | 0.410828 | 3_2:-56604 | Msa0389740:CDS |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 3_2:+53386 | None:intergenic |
| CTAGAAAACGTTTGAGAGAT+AGG | 0.426033 | 3_2:-57251 | Msa0389740:CDS |
| AAACAGCCATGTACATAGAT+AGG | 0.426768 | 3_2:+54096 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 3_2:+54145 | None:intergenic |
| GATTGTTTGGCGTTGCAGTT+TGG | 0.439343 | 3_2:-55730 | Msa0389740:CDS |
| TTGTCTTTGTTCCTCTTCGT+TGG | 0.441600 | 3_2:-56616 | Msa0389740:CDS |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 3_2:+54169 | None:intergenic |
| GATGATAAAGTTAAAATGAT+AGG | 0.455047 | 3_2:-53360 | Msa0389740:three_prime_UTR |
| CCACAAGGTGTAAACTACTA+AGG | 0.460985 | 3_2:+54066 | None:intergenic |
| CTGAAGTCATGACTTCCTAT+AGG | 0.461256 | 3_2:-53985 | Msa0389740:intron |
| TATACTATAGGTTCAAGAAA+TGG | 0.465673 | 3_2:-56592 | Msa0389740:CDS |
| CAACCTCAACTAGTAATACT+AGG | 0.473071 | 3_2:+53131 | None:intergenic |
| TATGGAAATTAATCCATGTT+GGG | 0.479933 | 3_2:+53300 | None:intergenic |
| GTTGGAAGTTATGCCTAGGC+AGG | 0.486116 | 3_2:-53450 | Msa0389740:CDS |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 3_2:+53533 | None:intergenic |
| TTGAATGTTCTTGGCTTTGG+TGG | 0.494279 | 3_2:-56812 | Msa0389740:CDS |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 3_2:-53638 | Msa0389740:CDS |
| ATAACATACCTGGTAAAAGA+TGG | 0.511064 | 3_2:+55670 | None:intergenic |
| CCTTAGTAGTTTACACCTTG+TGG | 0.519157 | 3_2:-54066 | Msa0389740:CDS |
| TTTCAACAAAAGCTACACTT+AGG | 0.522421 | 3_2:-53217 | Msa0389740:three_prime_UTR |
| GAAATGGCATTACTATCTCC+TGG | 0.527397 | 3_2:-56576 | Msa0389740:intron |
| GAATGGAGCAAGCTTTCTGT+TGG | 0.533472 | 3_2:-53468 | Msa0389740:CDS |
| GTCATTAGTATAAATGAATG+TGG | 0.535615 | 3_2:+53045 | None:intergenic |
| TAGAACAAACAATACACTAA+AGG | 0.547165 | 3_2:+56641 | None:intergenic |
| ACTCATTGAACAACGTTGGA+TGG | 0.548800 | 3_2:+57329 | None:intergenic |
| GCCTAGGCAGGTTATTCTCA+AGG | 0.551205 | 3_2:-53438 | Msa0389740:CDS |
| CTATGGAAATTAATCCATGT+TGG | 0.551310 | 3_2:+53299 | None:intergenic |
| TCCTTGAGAATAACCTGCCT+AGG | 0.556675 | 3_2:+53437 | None:intergenic |
| TACACAAAGTATAATTAGCT+CGG | 0.565423 | 3_2:+53271 | None:intergenic |
| CACAAGGTGTAAACTACTAA+GGG | 0.565958 | 3_2:+54067 | None:intergenic |
| ACAATCAATGCCCATGCTAA+CGG | 0.568226 | 3_2:+55747 | None:intergenic |
| TCACCTAGTATTACTAGTTG+AGG | 0.568637 | 3_2:-53134 | Msa0389740:three_prime_UTR |
| ATAAATCCTATCTATGTACA+TGG | 0.579385 | 3_2:-54102 | Msa0389740:CDS |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 3_2:-53485 | Msa0389740:CDS |
| TACACTAAAGGAACATCTTG+TGG | 0.584381 | 3_2:+56653 | None:intergenic |
| CTTGTCCTATAAATTGTCAG+TGG | 0.585464 | 3_2:-53525 | Msa0389740:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 3_2:+53597 | None:intergenic |
| TTCTGTTGGAAGTTATGCCT+AGG | 0.592892 | 3_2:-53454 | Msa0389740:CDS |
| TCAATGTCTTACGCCGACAA+CGG | 0.593431 | 3_2:-54021 | Msa0389740:CDS |
| CTCAGGATTCCACCATCGAA+TGG | 0.598119 | 3_2:+54186 | None:intergenic |
| CGCTGCAGAAGGTTCGATGT+CGG | 0.598180 | 3_2:+57275 | None:intergenic |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 3_2:-54138 | Msa0389740:CDS |
| ACATACTCATTGAACAACGT+TGG | 0.605939 | 3_2:+57325 | None:intergenic |
| CGGTGAGTTTGACAAAACTT+CGG | 0.607526 | 3_2:+53170 | None:intergenic |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 3_2:-53567 | Msa0389740:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 3_2:-53627 | Msa0389740:CDS |
| TAGGTGAATGTTTGTAATGA+CGG | 0.618803 | 3_2:+53150 | None:intergenic |
| ACGTTTGAGAGATAGGTCAA+AGG | 0.620864 | 3_2:-57244 | Msa0389740:intron |
| ATAAGGCCATGTAACTCTTG+CGG | 0.620960 | 3_2:+54132 | None:intergenic |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 3_2:-53649 | Msa0389740:CDS |
| GATGTCTCTGAGTCCCAACA+TGG | 0.627389 | 3_2:-53313 | Msa0389740:three_prime_UTR |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 3_2:-54160 | Msa0389740:CDS |
| CTATAGTATATCCAACGAAG+AGG | 0.638221 | 3_2:+56605 | None:intergenic |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 3_2:-54161 | Msa0389740:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 3_2:-53652 | Msa0389740:CDS |
| ACATGAAAGTTTCATCAACA+AGG | 0.659659 | 3_2:-57041 | Msa0389740:intron |
| GGCGTAAGACATTGACAATG+AGG | 0.659908 | 3_2:+54029 | None:intergenic |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 3_2:-53490 | Msa0389740:CDS |
| AAAATGTTATTATGATTACG+TGG | 0.685134 | 3_2:+57427 | None:intergenic |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 3_2:-53576 | Msa0389740:CDS |
| GTAGTATAGAATCTGCCACA+AGG | 0.687698 | 3_2:+54051 | None:intergenic |
| CGACATCGAACCTTCTGCAG+CGG | 0.727280 | 3_2:-57274 | Msa0389740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCATTTTTTTTTTTTTG+TGG | - | chr3_2:53355-53374 | Msa0389740:three_prime_UTR | 10.0% |
| !! | AAATGAATATTAAATATTGT+AGG | + | chr3_2:54907-54926 | None:intergenic | 10.0% |
| !!! | TTATTAATCTTACATTTTTT+AGG | - | chr3_2:56859-56878 | Msa0389740:intron | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | - | chr3_2:56860-56879 | Msa0389740:intron | 10.0% |
| !!! | TCATAATAACATTTTTTTTC+TGG | - | chr3_2:53131-53150 | Msa0389740:three_prime_UTR | 15.0% |
| !! | TAAAAAACATATATTATGTG+TGG | + | chr3_2:53400-53419 | None:intergenic | 15.0% |
| !!! | TCTATATTTTTCATCATTTA+TGG | - | chr3_2:53625-53644 | Msa0389740:CDS | 15.0% |
| !!! | TTTTATTTTCTTTTTCTTTC+AGG | - | chr3_2:53704-53723 | Msa0389740:intron | 15.0% |
| !! | ACAGAATTAAAACAAAAATT+AGG | + | chr3_2:53858-53877 | None:intergenic | 15.0% |
| !! | AAGTTTATAAGAAAACAAAA+AGG | - | chr3_2:55442-55461 | Msa0389740:intron | 15.0% |
| !!! | CAAATATTTTGCTTTAATAT+CGG | - | chr3_2:55587-55606 | Msa0389740:intron | 15.0% |
| !! | GGTATAATGAATATTATAAA+TGG | + | chr3_2:56307-56326 | None:intergenic | 15.0% |
| !! | TATACAAAAATCCAATTTCA+TGG | - | chr3_2:53024-53043 | Msa0389740:three_prime_UTR | 20.0% |
| !! | AAAATGTTATTATGATTACG+TGG | + | chr3_2:53126-53145 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATTTTTGTGATG+TGG | - | chr3_2:53411-53430 | Msa0389740:CDS | 20.0% |
| !!! | GTTTTTTATTTTTGTGATGT+GGG | - | chr3_2:53412-53431 | Msa0389740:CDS | 20.0% |
| !!! | TTTGTTTTTGTCTCAAATAA+AGG | - | chr3_2:53440-53459 | Msa0389740:CDS | 20.0% |
| !!! | TATTACTGTATTAGTTTCAT+CGG | - | chr3_2:54280-54299 | Msa0389740:intron | 20.0% |
| !!! | ATTTTTAACTGTCAAAAACA+TGG | - | chr3_2:54372-54391 | Msa0389740:intron | 20.0% |
| !!! | ATTTATTTAAGTGTGGTTTT+AGG | - | chr3_2:54778-54797 | Msa0389740:intron | 20.0% |
| !!! | TTTATTTAAGTGTGGTTTTA+GGG | - | chr3_2:54779-54798 | Msa0389740:intron | 20.0% |
| !!! | ATAAACTTGTTCAAAATCAT+TGG | - | chr3_2:54940-54959 | Msa0389740:intron | 20.0% |
| !!! | TTTTCCCATTGTAAATTTAT+AGG | - | chr3_2:55080-55099 | Msa0389740:intron | 20.0% |
| !! | GAATCCTATAAATTTACAAT+GGG | + | chr3_2:55087-55106 | None:intergenic | 20.0% |
| !! | AGAATCCTATAAATTTACAA+TGG | + | chr3_2:55088-55107 | None:intergenic | 20.0% |
| !!! | AAAAAAAATGGATTAAGCTA+AGG | + | chr3_2:55131-55150 | None:intergenic | 20.0% |
| !! | AAAGCAAAATATTTGTATGT+TGG | + | chr3_2:55582-55601 | None:intergenic | 20.0% |
| !!! | GATCAAATTTTTCCATTTTA+AGG | + | chr3_2:55898-55917 | None:intergenic | 20.0% |
| !! | ATCAAATATTGTTCATGTTT+AGG | + | chr3_2:56218-56237 | None:intergenic | 20.0% |
| !! | TGGAGAAAAAAAATTCATTA+AGG | + | chr3_2:56328-56347 | None:intergenic | 20.0% |
| !!! | TTAATGAATTTTTTTTCTCC+AGG | - | chr3_2:56327-56346 | Msa0389740:intron | 20.0% |
| !! | TAGGATTTATCTTCAATATA+AGG | + | chr3_2:56438-56457 | None:intergenic | 20.0% |
| !!! | GAAGGTTTTAAATAATAGTT+AGG | + | chr3_2:56775-56794 | None:intergenic | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | + | chr3_2:57020-57039 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | + | chr3_2:57167-57186 | None:intergenic | 20.0% |
| !! | GATGATAAAGTTAAAATGAT+AGG | - | chr3_2:57190-57209 | Msa0389740:intron | 20.0% |
| !!! | AGTTTTATAATGGTTTTGAA+TGG | - | chr3_2:57443-57462 | Msa0389740:five_prime_UTR | 20.0% |
| !!! | GTTTTATAATGGTTTTGAAT+GGG | - | chr3_2:57444-57463 | Msa0389740:five_prime_UTR | 20.0% |
| ! | ATTACGTGGAATAAGAAAAT+TGG | + | chr3_2:53112-53131 | None:intergenic | 25.0% |
| !!! | TTTGCAGAAACTGTTTTTTA+AGG | + | chr3_2:53167-53186 | None:intergenic | 25.0% |
| ! | ACTCATTTATTGAATGTTCT+TGG | - | chr3_2:53729-53748 | Msa0389740:intron | 25.0% |
| ! | ATCTATCATTCTAAGTGATT+CGG | - | chr3_2:53796-53815 | Msa0389740:intron | 25.0% |
| ! | TAGAACAAACAATACACTAA+AGG | + | chr3_2:53912-53931 | None:intergenic | 25.0% |
| ! | TATACTATAGGTTCAAGAAA+TGG | - | chr3_2:53958-53977 | Msa0389740:intron | 25.0% |
| ! | ATGAAACTATTAATTGCTTC+TGG | - | chr3_2:54048-54067 | Msa0389740:CDS | 25.0% |
| ! | TATCATTGATCTAGATTAGA+CGG | + | chr3_2:54444-54463 | None:intergenic | 25.0% |
| ! | GTAAACCAAAAAGATTGTAT+TGG | + | chr3_2:54636-54655 | None:intergenic | 25.0% |
| ! | CATTCTTTGGATAAAAAAGA+AGG | + | chr3_2:54658-54677 | None:intergenic | 25.0% |
| ! | ATGTGTGATTTATTTAAGTG+TGG | - | chr3_2:54771-54790 | Msa0389740:intron | 25.0% |
| ! | ATATGCATTCGATTCAATAT+TGG | - | chr3_2:54989-55008 | Msa0389740:intron | 25.0% |
| !! | AAATTTATAGGATTCTAGAG+TGG | - | chr3_2:55092-55111 | Msa0389740:intron | 25.0% |
| ! | AGATTTACACAAATACAGTA+AGG | + | chr3_2:55406-55425 | None:intergenic | 25.0% |
| ! | TGTTGGATGATATTAATTGA+AGG | + | chr3_2:55565-55584 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCTATTTATGC+TGG | - | chr3_2:55645-55664 | Msa0389740:intron | 25.0% |
| !!! | AACTCTCTTTTTGATAACAT+TGG | - | chr3_2:55825-55844 | Msa0389740:intron | 25.0% |
| !!! | ACATTGTTTTAGCCTTAAAA+TGG | - | chr3_2:55883-55902 | Msa0389740:CDS | 25.0% |
| ! | TTTACATGTTGCAGTATATT+TGG | - | chr3_2:55945-55964 | Msa0389740:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | + | chr3_2:56031-56050 | None:intergenic | 25.0% |
| ! | ATGAAGAATTAGAACTTCTA+CGG | - | chr3_2:56187-56206 | Msa0389740:intron | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | - | chr3_2:56448-56467 | Msa0389740:intron | 25.0% |
| ! | TAGACCAATAGAATTTCAAA+AGG | - | chr3_2:56629-56648 | Msa0389740:CDS | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | - | chr3_2:56960-56979 | Msa0389740:intron | 25.0% |
| ! | AAAAACCACTGACAATTTAT+AGG | + | chr3_2:57033-57052 | None:intergenic | 25.0% |
| ! | TATGGAAATTAATCCATGTT+GGG | + | chr3_2:57253-57272 | None:intergenic | 25.0% |
| ! | TACACAAAGTATAATTAGCT+CGG | + | chr3_2:57282-57301 | None:intergenic | 25.0% |
| ! | TAGGAGCTTGAATAAAATTA+CGG | - | chr3_2:57352-57371 | Msa0389740:five_prime_UTR | 25.0% |
| !!! | TTGAGGTTGTAGTTTTATAA+TGG | - | chr3_2:57433-57452 | Msa0389740:five_prime_UTR | 25.0% |
| ! | GAAAAACTGAGAATATACAT+TGG | + | chr3_2:57475-57494 | None:intergenic | 25.0% |
| ! | GTCATTAGTATAAATGAATG+TGG | + | chr3_2:57508-57527 | None:intergenic | 25.0% |
| !! | TTAGCTTTACACCATGAAAT+TGG | + | chr3_2:53038-53057 | None:intergenic | 30.0% |
| !!! | AACTGTTTTTTAAGGAAGGA+AGG | + | chr3_2:53159-53178 | None:intergenic | 30.0% |
| !!! | CAGAAACTGTTTTTTAAGGA+AGG | + | chr3_2:53163-53182 | None:intergenic | 30.0% |
| ! | GTTTTTGTCTCAAATAAAGG+AGG | - | chr3_2:53443-53462 | Msa0389740:CDS | 30.0% |
| ACATGAAAGTTTCATCAACA+AGG | - | chr3_2:53509-53528 | Msa0389740:CDS | 30.0% | |
| !!! | CAAGGTATGTTTTTTATGTC+TGG | - | chr3_2:53527-53546 | Msa0389740:CDS | 30.0% |
| TTTCATCATTTATGGCCATT+TGG | - | chr3_2:53633-53652 | Msa0389740:CDS | 30.0% | |
| TTCATCATTTATGGCCATTT+GGG | - | chr3_2:53634-53653 | Msa0389740:CDS | 30.0% | |
| TCAATATTCACATACCCAAA+TGG | + | chr3_2:53651-53670 | None:intergenic | 30.0% | |
| TTATTGAATGTTCTTGGCTT+TGG | - | chr3_2:53735-53754 | Msa0389740:intron | 30.0% | |
| TCTATCATTCTAAGTGATTC+GGG | - | chr3_2:53797-53816 | Msa0389740:intron | 30.0% | |
| !! | TCTGTGTTATTCTCTTTTAC+AGG | - | chr3_2:53873-53892 | Msa0389740:intron | 30.0% |
| CTGAGATATGTTAATTTACC+AGG | + | chr3_2:53995-54014 | None:intergenic | 30.0% | |
| ! | TGTAATCACTAGTGTCATTA+TGG | - | chr3_2:54184-54203 | Msa0389740:CDS | 30.0% |
| AACTGTCAAAAACATGGAAT+CGG | - | chr3_2:54378-54397 | Msa0389740:intron | 30.0% | |
| ! | TTATGATAATGACAGCGATA+AGG | + | chr3_2:54510-54529 | None:intergenic | 30.0% |
| TTATCGCTGTCATTATCATA+AGG | - | chr3_2:54509-54528 | Msa0389740:intron | 30.0% | |
| AACTATTGTTCATGTGTTTC+AGG | - | chr3_2:54595-54614 | Msa0389740:intron | 30.0% | |
| ! | CTATGCCAATACAATCTTTT+TGG | - | chr3_2:54628-54647 | Msa0389740:intron | 30.0% |
| AGAAAAAGCTTCTCATTCTT+TGG | + | chr3_2:54671-54690 | None:intergenic | 30.0% | |
| !! | AAAGAATGAGAAGCTTTTTC+TGG | - | chr3_2:54670-54689 | Msa0389740:intron | 30.0% |
| ATAACATACCTGGTAAAAGA+TGG | + | chr3_2:54883-54902 | None:intergenic | 30.0% | |
| TATTGTAGGTATAACATACC+TGG | + | chr3_2:54893-54912 | None:intergenic | 30.0% | |
| TTGGCTTCTACTATCATTAT+TGG | - | chr3_2:54959-54978 | Msa0389740:intron | 30.0% | |
| ! | TTCATCAGAGATTTGTTTCA+CGG | + | chr3_2:55021-55040 | None:intergenic | 30.0% |
| !!! | ATGCCAAAGAAGTTTTAAGA+AGG | - | chr3_2:55214-55233 | Msa0389740:intron | 30.0% |
| TCTCCTTCTTAAAACTTCTT+TGG | + | chr3_2:55220-55239 | None:intergenic | 30.0% | |
| ! | GTCTTATATGTTAGTTTCCA+GGG | + | chr3_2:55256-55275 | None:intergenic | 30.0% |
| ! | TGTCTTATATGTTAGTTTCC+AGG | + | chr3_2:55257-55276 | None:intergenic | 30.0% |
| GGAAACTAACATATAAGACA+AGG | - | chr3_2:55257-55276 | Msa0389740:intron | 30.0% | |
| ! | TCGAAGTTGATCACATATAT+GGG | + | chr3_2:55309-55328 | None:intergenic | 30.0% |
| ! | TTCGAAGTTGATCACATATA+TGG | + | chr3_2:55310-55329 | None:intergenic | 30.0% |
| ! | ACTGGTAGTTTTCATTTCTT+TGG | - | chr3_2:55715-55734 | Msa0389740:CDS | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | - | chr3_2:55914-55933 | Msa0389740:CDS | 30.0% | |
| TGTCAACAAACAATAGGATT+TGG | + | chr3_2:56002-56021 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | + | chr3_2:56067-56086 | None:intergenic | 30.0% | |
| TTGCATTACTACTTATCTGT+CGG | - | chr3_2:56067-56086 | Msa0389740:intron | 30.0% | |
| ATATTGTCAAGACTCCTAAA+TGG | + | chr3_2:56101-56120 | None:intergenic | 30.0% | |
| AATTGTACAGCATGAAACAT+GGG | + | chr3_2:56134-56153 | None:intergenic | 30.0% | |
| TAATTGTACAGCATGAAACA+TGG | + | chr3_2:56135-56154 | None:intergenic | 30.0% | |
| GATAGATGTTACCATTAGAA+TGG | - | chr3_2:56235-56254 | Msa0389740:intron | 30.0% | |
| CTATCACAAATCCATTCTAA+TGG | + | chr3_2:56249-56268 | None:intergenic | 30.0% | |
| !!! | GAATTTTTTTTCTCCAGGAT+TGG | - | chr3_2:56332-56351 | Msa0389740:intron | 30.0% |
| ACCAATAGAATTTCAAAAGG+CGG | - | chr3_2:56632-56651 | Msa0389740:CDS | 30.0% | |
| AAACACCTACTGTACAAAAA+CGG | + | chr3_2:56805-56824 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | + | chr3_2:56956-56975 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | - | chr3_2:56971-56990 | Msa0389740:intron | 30.0% | |
| !! | AGTGGTTTTTCAAATACTGA+AGG | - | chr3_2:57043-57062 | Msa0389740:CDS | 30.0% |
| CTATGGAAATTAATCCATGT+TGG | + | chr3_2:57254-57273 | None:intergenic | 30.0% | |
| ! | TGTAGCTTTTGTTGAAATCA+CGG | + | chr3_2:57330-57349 | None:intergenic | 30.0% |
| TTTCAACAAAAGCTACACTT+AGG | - | chr3_2:57333-57352 | Msa0389740:exon | 30.0% | |
| TAGGTGAATGTTTGTAATGA+CGG | + | chr3_2:57403-57422 | None:intergenic | 30.0% | |
| ! | CATCACCATAGTTTTTGTTC+TGG | - | chr3_2:53196-53215 | Msa0389740:three_prime_UTR | 35.0% |
| TGGATCCAGAACAAAAACTA+TGG | + | chr3_2:53204-53223 | None:intergenic | 35.0% | |
| ACATACTCATTGAACAACGT+TGG | + | chr3_2:53228-53247 | None:intergenic | 35.0% | |
| CTAGAAAACGTTTGAGAGAT+AGG | - | chr3_2:53299-53318 | Msa0389740:three_prime_UTR | 35.0% | |
| ACGTCTTCAATCAGAAATGT+CGG | - | chr3_2:53552-53571 | Msa0389740:CDS | 35.0% | |
| !! | GGTGGTTTTTGTTTCATCTT+AGG | - | chr3_2:53756-53775 | Msa0389740:intron | 35.0% |
| CTATCATTCTAAGTGATTCG+GGG | - | chr3_2:53798-53817 | Msa0389740:intron | 35.0% | |
| TACACTAAAGGAACATCTTG+TGG | + | chr3_2:53900-53919 | None:intergenic | 35.0% | |
| CTATAGTATATCCAACGAAG+AGG | + | chr3_2:53948-53967 | None:intergenic | 35.0% | |
| CTCTTCGTTGGATATACTAT+AGG | - | chr3_2:53946-53965 | Msa0389740:intron | 35.0% | |
| ATCTGAACACATGTCGTATA+TGG | + | chr3_2:54134-54153 | None:intergenic | 35.0% | |
| ACCGGCATTATGAAGATAAT+AGG | - | chr3_2:54154-54173 | Msa0389740:CDS | 35.0% | |
| CCCTATTATCTTCATAATGC+CGG | + | chr3_2:54158-54177 | None:intergenic | 35.0% | |
| CCGGCATTATGAAGATAATA+GGG | - | chr3_2:54155-54174 | Msa0389740:CDS | 35.0% | |
| !! | TGTCATTATGGTGTTGGTAT+CGG | - | chr3_2:54196-54215 | Msa0389740:CDS | 35.0% |
| ! | TCGGCATTCTAGCATAATTT+TGG | - | chr3_2:54299-54318 | Msa0389740:intron | 35.0% |
| !! | GGTCATTTTGTAGCATGAAT+AGG | - | chr3_2:54320-54339 | Msa0389740:intron | 35.0% |
| ! | TGAATAGGCATTTTGTGAGA+AGG | - | chr3_2:54335-54354 | Msa0389740:intron | 35.0% |
| ! | GAATAGGCATTTTGTGAGAA+GGG | - | chr3_2:54336-54355 | Msa0389740:intron | 35.0% |
| CATGTTACACATTTACTGCA+GGG | + | chr3_2:54407-54426 | None:intergenic | 35.0% | |
| GCTAGGATGTCAAATTACTA+AGG | + | chr3_2:54729-54748 | None:intergenic | 35.0% | |
| ! | GTTCTTATCCATCTTTTACC+AGG | - | chr3_2:54872-54891 | Msa0389740:intron | 35.0% |
| !!! | AAGTTTTAAGAAGGAGATCC+AGG | - | chr3_2:55223-55242 | Msa0389740:intron | 35.0% |
| !!! | AGTTTTAAGAAGGAGATCCA+GGG | - | chr3_2:55224-55243 | Msa0389740:intron | 35.0% |
| ! | ATATGTTAGTTTCCAGGGTT+CGG | + | chr3_2:55251-55270 | None:intergenic | 35.0% |
| !!! | TTGATCACAAGTTTTGAAGC+TGG | - | chr3_2:55361-55380 | Msa0389740:intron | 35.0% |
| AACAAAAAGGCTAAAGATGC+AGG | - | chr3_2:55455-55474 | Msa0389740:intron | 35.0% | |
| AATGAAAACTACCAGTGCAT+TGG | + | chr3_2:55711-55730 | None:intergenic | 35.0% | |
| !! | TTTGGTGTTGATTTCAACCA+TGG | - | chr3_2:55733-55752 | Msa0389740:CDS | 35.0% |
| TTGTCAAACTCTCGAGTTTA+CGG | - | chr3_2:55768-55787 | Msa0389740:intron | 35.0% | |
| GTTGCAGTATATTTGGTATC+TGG | - | chr3_2:55952-55971 | Msa0389740:intron | 35.0% | |
| TTGGTTCAACAACTAGTAGT+AGG | + | chr3_2:55983-56002 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | + | chr3_2:56068-56087 | None:intergenic | 35.0% | |
| TGTCGGATGTAAAACCATTT+AGG | - | chr3_2:56084-56103 | Msa0389740:intron | 35.0% | |
| ATTGTACAGCATGAAACATG+GGG | + | chr3_2:56133-56152 | None:intergenic | 35.0% | |
| GGATGCATAAAGTAACGTAA+AGG | + | chr3_2:56286-56305 | None:intergenic | 35.0% | |
| ATGGTAAAGAAAACCAATCC+TGG | + | chr3_2:56348-56367 | None:intergenic | 35.0% | |
| ! | TGGTTTTCTTTACCATTCGA+TGG | - | chr3_2:56352-56371 | Msa0389740:intron | 35.0% |
| ! | TTTTCTTTACCATTCGATGG+TGG | - | chr3_2:56355-56374 | Msa0389740:intron | 35.0% |
| AAACAGCCATGTACATAGAT+AGG | + | chr3_2:56457-56476 | None:intergenic | 35.0% | |
| CACAAGGTGTAAACTACTAA+GGG | + | chr3_2:56486-56505 | None:intergenic | 35.0% | |
| GATCTCTTAAAAACCGTTGT+CGG | + | chr3_2:56545-56564 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | + | chr3_2:56583-56602 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | - | chr3_2:56586-56605 | Msa0389740:CDS | 35.0% | |
| ! | TTGGTCTAAAGCAAACAAAC+TGG | + | chr3_2:56617-56636 | None:intergenic | 35.0% |
| !!! | ACCGCCTTTTGAAATTCTAT+TGG | + | chr3_2:56636-56655 | None:intergenic | 35.0% |
| ACTTGACCTTATAACCTCAA+GGG | + | chr3_2:56722-56741 | None:intergenic | 35.0% | |
| AACTTGACCTTATAACCTCA+AGG | + | chr3_2:56723-56742 | None:intergenic | 35.0% | |
| CTCAGAAAGCAAATAACATG+TGG | - | chr3_2:56898-56917 | Msa0389740:intron | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | - | chr3_2:56901-56920 | Msa0389740:intron | 35.0% | |
| CTTGTCCTATAAATTGTCAG+TGG | - | chr3_2:57025-57044 | Msa0389740:intron | 35.0% | |
| TAATTAGCTCGGTCATACTA+TGG | + | chr3_2:57271-57290 | None:intergenic | 35.0% | |
| TCACCTAGTATTACTAGTTG+AGG | - | chr3_2:57416-57435 | Msa0389740:five_prime_UTR | 35.0% | |
| CAACCTCAACTAGTAATACT+AGG | + | chr3_2:57422-57441 | None:intergenic | 35.0% | |
| ACTCATTGAACAACGTTGGA+TGG | + | chr3_2:53224-53243 | None:intergenic | 40.0% | |
| ACGTTTGAGAGATAGGTCAA+AGG | - | chr3_2:53306-53325 | Msa0389740:three_prime_UTR | 40.0% | |
| !! | TTGAATGTTCTTGGCTTTGG+TGG | - | chr3_2:53738-53757 | Msa0389740:intron | 40.0% |
| TTGTCTTTGTTCCTCTTCGT+TGG | - | chr3_2:53934-53953 | Msa0389740:intron | 40.0% | |
| GAAATGGCATTACTATCTCC+TGG | - | chr3_2:53974-53993 | Msa0389740:intron | 40.0% | |
| TACGACATGTGTTCAGATAC+CGG | - | chr3_2:54136-54155 | Msa0389740:CDS | 40.0% | |
| ! | CACTAGTGTCATTATGGTGT+TGG | - | chr3_2:54190-54209 | Msa0389740:CDS | 40.0% |
| CCATGTTACACATTTACTGC+AGG | + | chr3_2:54408-54427 | None:intergenic | 40.0% | |
| CCTGCAGTAAATGTGTAACA+TGG | - | chr3_2:54405-54424 | Msa0389740:intron | 40.0% | |
| ACAATCAATGCCCATGCTAA+CGG | + | chr3_2:54806-54825 | None:intergenic | 40.0% | |
| !! | TAGCATGGGCATTGATTGTT+TGG | - | chr3_2:54807-54826 | Msa0389740:intron | 40.0% |
| ! | TCTAGAGTGGTATCTAGCAT+TGG | - | chr3_2:55105-55124 | Msa0389740:intron | 40.0% |
| AGATATTTGTCATCCCACGT+AGG | - | chr3_2:55168-55187 | Msa0389740:intron | 40.0% | |
| !!! | CATTGGTGGTGTTTTTTGTG+GGG | + | chr3_2:55694-55713 | None:intergenic | 40.0% |
| !!! | GCATTGGTGGTGTTTTTTGT+GGG | + | chr3_2:55695-55714 | None:intergenic | 40.0% |
| !!! | TGCATTGGTGGTGTTTTTTG+TGG | + | chr3_2:55696-55715 | None:intergenic | 40.0% |
| AAAAAACACCACCAATGCAC+TGG | - | chr3_2:55697-55716 | Msa0389740:CDS | 40.0% | |
| TTCAACCATGGTAGTAGTCA+TGG | - | chr3_2:55745-55764 | Msa0389740:CDS | 40.0% | |
| ACTCTCGAGTTTACGGTTAT+AGG | - | chr3_2:55775-55794 | Msa0389740:intron | 40.0% | |
| CAGGTGTGTCAACAAACAAT+AGG | + | chr3_2:56008-56027 | None:intergenic | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | + | chr3_2:56027-56046 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | + | chr3_2:56421-56440 | None:intergenic | 40.0% | |
| ! | TCTATGTACATGGCTGTTTC+TGG | - | chr3_2:56458-56477 | Msa0389740:intron | 40.0% |
| CCACAAGGTGTAAACTACTA+AGG | + | chr3_2:56487-56506 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | - | chr3_2:56484-56503 | Msa0389740:intron | 40.0% | |
| GTAGTATAGAATCTGCCACA+AGG | + | chr3_2:56502-56521 | None:intergenic | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | + | chr3_2:56567-56586 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | - | chr3_2:56565-56584 | Msa0389740:intron | 40.0% | |
| TACAAAAACGGTCTGAAGGA+AGG | + | chr3_2:56793-56812 | None:intergenic | 40.0% | |
| ACTGTACAAAAACGGTCTGA+AGG | + | chr3_2:56797-56816 | None:intergenic | 40.0% | |
| !! | TCAGACCGTTTTTGTACAGT+AGG | - | chr3_2:56797-56816 | Msa0389740:CDS | 40.0% |
| !!! | GTACAGTAGGTGTTTTAGAG+TGG | - | chr3_2:56810-56829 | Msa0389740:CDS | 40.0% |
| TCTTCAAGGAATGTTTACGG+TGG | - | chr3_2:56974-56993 | Msa0389740:intron | 40.0% | |
| TTCTGTTGGAAGTTATGCCT+AGG | - | chr3_2:57096-57115 | Msa0389740:intron | 40.0% | |
| CGGTGAGTTTGACAAAACTT+CGG | + | chr3_2:57383-57402 | None:intergenic | 40.0% | |
| TATCGGATACCGACATGTGT+CGG | - | chr3_2:54213-54232 | Msa0389740:intron | 45.0% | |
| TCCAAGTATCCGACACATGT+CGG | + | chr3_2:54225-54244 | None:intergenic | 45.0% | |
| TGGACACGTCTACGATATGA+AGG | - | chr3_2:54241-54260 | Msa0389740:intron | 45.0% | |
| GGACACGTCTACGATATGAA+GGG | - | chr3_2:54242-54261 | Msa0389740:intron | 45.0% | |
| CAGTAATACCTAGCTAGCAC+CGG | + | chr3_2:54268-54287 | None:intergenic | 45.0% | |
| !! | GGTCTGCTTTTCATTTGCTG+AGG | - | chr3_2:54691-54710 | Msa0389740:intron | 45.0% |
| TTGACATCCTAGCATGCGAA+TGG | - | chr3_2:54736-54755 | Msa0389740:intron | 45.0% | |
| CAATGAACCATTCGCATGCT+AGG | + | chr3_2:54746-54765 | None:intergenic | 45.0% | |
| CTAGCATGCGAATGGTTCAT+TGG | - | chr3_2:54744-54763 | Msa0389740:intron | 45.0% | |
| !!! | GTTTTAGGGTCCGTTAGCAT+GGG | - | chr3_2:54793-54812 | Msa0389740:intron | 45.0% |
| GATTGTTTGGCGTTGCAGTT+TGG | - | chr3_2:54820-54839 | Msa0389740:intron | 45.0% | |
| GAAAACTACCAGTGCATTGG+TGG | + | chr3_2:55708-55727 | None:intergenic | 45.0% | |
| GACAACCATGACTACTACCA+TGG | + | chr3_2:55753-55772 | None:intergenic | 45.0% | |
| ! | TTGACACACCTGCCTGATTT+TGG | - | chr3_2:56016-56035 | Msa0389740:intron | 45.0% |
| TTAGAAGCTATGCGACCAGA+GGG | - | chr3_2:56390-56409 | Msa0389740:intron | 45.0% | |
| GGCGTAAGACATTGACAATG+AGG | + | chr3_2:56524-56543 | None:intergenic | 45.0% | |
| TCAATGTCTTACGCCGACAA+CGG | - | chr3_2:56529-56548 | Msa0389740:intron | 45.0% | |
| ! | TAGTGCCACTACAGCTAATG+CGG | + | chr3_2:56677-56696 | None:intergenic | 45.0% |
| TGTCGTCCCTTGAGGTTATA+AGG | - | chr3_2:56713-56732 | Msa0389740:intron | 45.0% | |
| GTCAAGTTCTTACCACCAAG+CGG | - | chr3_2:56735-56754 | Msa0389740:intron | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | - | chr3_2:56983-57002 | Msa0389740:intron | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | - | chr3_2:57060-57079 | Msa0389740:CDS | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | - | chr3_2:57065-57084 | Msa0389740:CDS | 45.0% | |
| GAATGGAGCAAGCTTTCTGT+TGG | - | chr3_2:57082-57101 | Msa0389740:CDS | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | + | chr3_2:57116-57135 | None:intergenic | 45.0% | |
| !!! | GTTTTTTTATTTATATTTTT+TGG | - | chr3_2:53585-53604 | Msa0389740:CDS | 5.0% |
| !! | TATTTGAAAAAAAAAAAAAA+TGG | + | chr3_2:55143-55162 | None:intergenic | 5.0% |
| !!! | AACTTTTTTTTTTTTTTTTT+AGG | - | chr3_2:55493-55512 | Msa0389740:intron | 5.0% |
| ACCGACATGTGTCGGATACT+TGG | - | chr3_2:54221-54240 | Msa0389740:intron | 50.0% | |
| ACGTCTACGATATGAAGGGC+CGG | - | chr3_2:54246-54265 | Msa0389740:intron | 50.0% | |
| !!! | GGTTTTAGGGTCCGTTAGCA+TGG | - | chr3_2:54792-54811 | Msa0389740:intron | 50.0% |
| ACCAACCAAGCTACCTACGT+GGG | + | chr3_2:55184-55203 | None:intergenic | 50.0% | |
| CTCAGGATTCCACCATCGAA+TGG | + | chr3_2:56367-56386 | None:intergenic | 50.0% | |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | + | chr3_2:56384-56403 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | + | chr3_2:56391-56410 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | - | chr3_2:56389-56408 | Msa0389740:intron | 50.0% | |
| TGCGGTTCCAATCACGATTG+TGG | + | chr3_2:56659-56678 | None:intergenic | 50.0% | |
| TGGAACCGCATTAGCTGTAG+TGG | - | chr3_2:56669-56688 | Msa0389740:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | - | chr3_2:56705-56724 | Msa0389740:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | - | chr3_2:56912-56931 | Msa0389740:intron | 50.0% |
| GTTGGAAGTTATGCCTAGGC+AGG | - | chr3_2:57100-57119 | Msa0389740:intron | 50.0% | |
| GCCTAGGCAGGTTATTCTCA+AGG | - | chr3_2:57112-57131 | Msa0389740:intron | 50.0% | |
| GATGTCTCTGAGTCCCAACA+TGG | - | chr3_2:57237-57256 | Msa0389740:intron | 50.0% | |
| CGCTGCAGAAGGTTCGATGT+CGG | + | chr3_2:53278-53297 | None:intergenic | 55.0% | |
| CGACATCGAACCTTCTGCAG+CGG | - | chr3_2:53276-53295 | Msa0389740:three_prime_UTR | 55.0% | |
| !! | CGTTTTCTAGCCGCTGCAGA+AGG | + | chr3_2:53289-53308 | None:intergenic | 55.0% |
| GTCATCCCACGTAGGTAGCT+TGG | - | chr3_2:55176-55195 | Msa0389740:intron | 55.0% | |
| TCCCACGTAGGTAGCTTGGT+TGG | - | chr3_2:55180-55199 | Msa0389740:intron | 55.0% | |
| CACCAACCAAGCTACCTACG+TGG | + | chr3_2:55185-55204 | None:intergenic | 55.0% | |
| GAGCTGCCGCAAGAGTTACA+TGG | - | chr3_2:56412-56431 | Msa0389740:intron | 55.0% | |
| AGGCGGTCCACAATCGTGAT+TGG | - | chr3_2:56649-56668 | Msa0389740:CDS | 55.0% | |
| ACCACCAAGCGGACAACTCA+TGG | - | chr3_2:56746-56765 | Msa0389740:intron | 55.0% | |
| TCCATGAGTTGTCCGCTTGG+TGG | + | chr3_2:56750-56769 | None:intergenic | 55.0% | |
| GTGTCCATGAGTTGTCCGCT+TGG | + | chr3_2:56753-56772 | None:intergenic | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | - | chr3_2:56921-56940 | Msa0389740:intron | 55.0% |
| ! | ATGAAGGGCCGGTGCTAGCT+AGG | - | chr3_2:54257-54276 | Msa0389740:intron | 60.0% |
| AGTTTCCAGGGTTCGGACCC+TGG | + | chr3_2:55244-55263 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | - | chr3_2:56922-56941 | Msa0389740:intron | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | - | chr3_2:56923-56942 | Msa0389740:intron | 60.0% |
| GAGATCCAGGGTCCGAACCC+TGG | - | chr3_2:55236-55255 | Msa0389740:intron | 65.0% | |
| ACTCTTGCGGCAGCTCCCTC+TGG | + | chr3_2:56408-56427 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 52994 | 57578 | 52994 | ID=Msa0389740;Name=Msa0389740 |
| chr3_2 | mRNA | 52994 | 57578 | 52994 | ID=Msa0389740-mRNA-1;Parent=Msa0389740;Name=Msa0389740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=244|1|1|1|1|1|8|391|350 |
| chr3_2 | exon | 52994 | 53691 | 52994 | ID=Msa0389740-mRNA-1:exon:11;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 53986 | 54223 | 53986 | ID=Msa0389740-mRNA-1:exon:10;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 55679 | 55772 | 55679 | ID=Msa0389740-mRNA-1:exon:9;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 55860 | 55955 | 55860 | ID=Msa0389740-mRNA-1:exon:8;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 56577 | 56677 | 56577 | ID=Msa0389740-mRNA-1:exon:7;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 56789 | 56846 | 56789 | ID=Msa0389740-mRNA-1:exon:6;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 57042 | 57110 | 57042 | ID=Msa0389740-mRNA-1:exon:5;Parent=Msa0389740-mRNA-1 |
| chr3_2 | exon | 57245 | 57578 | 57245 | ID=Msa0389740-mRNA-1:exon:4;Parent=Msa0389740-mRNA-1 |
| chr3_2 | five_prime_UTR | 57335 | 57578 | 57335 | ID=Msa0389740-mRNA-1:five_prime_utr;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 57245 | 57334 | 57245 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 57042 | 57110 | 57042 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 56789 | 56846 | 56789 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 56577 | 56677 | 56577 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 55860 | 55955 | 55860 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 55679 | 55772 | 55679 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 53986 | 54223 | 53986 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | CDS | 53385 | 53691 | 53385 | ID=Msa0389740-mRNA-1:cds;Parent=Msa0389740-mRNA-1 |
| chr3_2 | three_prime_UTR | 52994 | 53384 | 52994 | ID=Msa0389740-mRNA-1:three_prime_utr;Parent=Msa0389740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
