Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0202920 | TXG61622.1 | 62.387 | 444 | 87 | 15 | 1 | 412 | 1 | 396 | 2.11e-171 | 496 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0202920 | sp|Q5HZ09|BRXL3_ARATH | 47.285 | 442 | 131 | 14 | 1 | 412 | 1 | 370 | 1.73e-117 | 350 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0202920 | A0A5C7HZR1 | 62.387 | 444 | 87 | 15 | 1 | 412 | 1 | 396 | 1.01e-171 | 496 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0202920 | Msa0472950 | 0.824513 | 7.752189e-54 | -8.615850e-47 |
Msa0202920 | Msa0528570 | 0.801702 | 7.949919e-49 | -8.615850e-47 |
Msa0202920 | Msa0548470 | 0.802391 | 5.735338e-49 | -8.615850e-47 |
Msa0202920 | Msa0585020 | 0.809602 | 1.745085e-50 | -8.615850e-47 |
Msa0202920 | Msa0597270 | 0.811847 | 5.703723e-51 | -8.615850e-47 |
Msa0202920 | Msa0675330 | 0.809323 | 2.002614e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0202920 | MtrunA17_Chr2g0300301 | 99.515 | 206 | 1 | 0 | 207 | 412 | 147 | 352 | 2.44e-149 | 427 |
Msa0202920 | MtrunA17_Chr2g0300301 | 99.315 | 146 | 0 | 1 | 1 | 145 | 1 | 146 | 1.62e-96 | 293 |
Msa0202920 | MtrunA17_Chr8g0343511 | 70.388 | 206 | 58 | 2 | 207 | 412 | 167 | 369 | 1.46e-97 | 296 |
Msa0202920 | MtrunA17_Chr8g0343511 | 54.335 | 173 | 44 | 7 | 1 | 145 | 1 | 166 | 1.17e-43 | 156 |
Msa0202920 | MtrunA17_Chr8g0369441 | 45.755 | 212 | 69 | 8 | 207 | 412 | 162 | 333 | 1.14e-46 | 163 |
Msa0202920 | MtrunA17_Chr8g0369441 | 43.452 | 168 | 65 | 6 | 1 | 145 | 1 | 161 | 1.12e-24 | 103 |
Msa0202920 | MtrunA17_Chr8g0369441 | 37.037 | 81 | 50 | 1 | 331 | 411 | 107 | 186 | 8.26e-11 | 63.2 |
Msa0202920 | MtrunA17_Chr5g0409431 | 32.840 | 338 | 108 | 9 | 91 | 412 | 20 | 254 | 3.53e-42 | 149 |
Msa0202920 | MtrunA17_Chr5g0442001 | 40.833 | 120 | 68 | 2 | 292 | 411 | 966 | 1082 | 9.91e-20 | 92.0 |
Msa0202920 | MtrunA17_Chr3g0094741 | 42.500 | 120 | 66 | 2 | 292 | 411 | 977 | 1093 | 1.79e-19 | 91.3 |
Msa0202920 | MtrunA17_Chr6g0463421 | 49.231 | 65 | 33 | 0 | 347 | 411 | 1028 | 1092 | 2.17e-15 | 78.6 |
Msa0202920 | MtrunA17_Chr8g0362061 | 50.000 | 58 | 29 | 0 | 350 | 407 | 945 | 1002 | 3.19e-13 | 71.6 |
Msa0202920 | MtrunA17_Chr3g0109811 | 51.852 | 54 | 26 | 0 | 358 | 411 | 974 | 1027 | 9.79e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0202920 | AT1G54180.1 | 47.285 | 442 | 131 | 14 | 1 | 412 | 1 | 370 | 1.76e-118 | 350 |
Msa0202920 | AT5G20540.1 | 71.498 | 207 | 56 | 3 | 207 | 412 | 180 | 384 | 3.20e-92 | 283 |
Msa0202920 | AT5G20540.1 | 51.381 | 181 | 50 | 5 | 1 | 145 | 1 | 179 | 1.05e-41 | 151 |
Msa0202920 | AT5G20540.1 | 39.535 | 86 | 49 | 2 | 326 | 411 | 122 | 204 | 3.28e-11 | 65.1 |
Msa0202920 | AT3G14000.2 | 60.190 | 211 | 70 | 5 | 207 | 412 | 173 | 374 | 9.98e-78 | 245 |
Msa0202920 | AT3G14000.2 | 48.000 | 175 | 58 | 4 | 1 | 145 | 1 | 172 | 1.09e-36 | 138 |
Msa0202920 | AT3G14000.1 | 60.190 | 211 | 70 | 5 | 207 | 412 | 173 | 374 | 9.98e-78 | 245 |
Msa0202920 | AT3G14000.1 | 48.000 | 175 | 58 | 4 | 1 | 145 | 1 | 172 | 1.09e-36 | 138 |
Msa0202920 | AT1G54180.2 | 55.610 | 205 | 60 | 4 | 208 | 412 | 171 | 344 | 6.72e-69 | 222 |
Msa0202920 | AT1G54180.2 | 50.867 | 173 | 53 | 5 | 1 | 145 | 1 | 169 | 1.24e-41 | 150 |
Msa0202920 | AT1G31880.1 | 47.115 | 208 | 76 | 5 | 207 | 412 | 169 | 344 | 8.52e-49 | 169 |
Msa0202920 | AT1G31880.1 | 37.143 | 175 | 73 | 5 | 1 | 145 | 1 | 168 | 4.00e-20 | 91.3 |
Msa0202920 | AT1G31880.2 | 47.115 | 208 | 76 | 5 | 207 | 412 | 183 | 358 | 1.16e-48 | 169 |
Msa0202920 | AT1G31880.2 | 37.143 | 175 | 73 | 5 | 1 | 145 | 15 | 182 | 5.44e-20 | 91.3 |
Msa0202920 | AT2G35600.2 | 46.860 | 207 | 67 | 7 | 207 | 412 | 167 | 331 | 1.50e-46 | 163 |
Msa0202920 | AT2G35600.2 | 39.080 | 174 | 69 | 4 | 1 | 145 | 1 | 166 | 2.75e-19 | 88.6 |
Msa0202920 | AT2G35600.1 | 46.860 | 207 | 67 | 7 | 207 | 412 | 167 | 331 | 1.50e-46 | 163 |
Msa0202920 | AT2G35600.1 | 39.080 | 174 | 69 | 4 | 1 | 145 | 1 | 166 | 2.75e-19 | 88.6 |
Msa0202920 | AT2G35600.3 | 46.860 | 207 | 67 | 7 | 207 | 412 | 167 | 331 | 1.50e-46 | 163 |
Msa0202920 | AT2G35600.3 | 39.080 | 174 | 69 | 4 | 1 | 145 | 1 | 166 | 2.75e-19 | 88.6 |
Msa0202920 | AT2G21030.1 | 39.873 | 158 | 61 | 5 | 208 | 363 | 33 | 158 | 2.04e-19 | 85.1 |
Msa0202920 | AT5G12350.1 | 50.746 | 67 | 33 | 0 | 345 | 411 | 995 | 1061 | 1.79e-17 | 85.5 |
Msa0202920 | AT5G19420.2 | 56.250 | 64 | 26 | 1 | 350 | 411 | 1056 | 1119 | 6.84e-17 | 83.6 |
Msa0202920 | AT5G19420.1 | 56.250 | 64 | 26 | 1 | 350 | 411 | 1022 | 1085 | 6.90e-17 | 83.6 |
Msa0202920 | AT1G65920.2 | 44.928 | 69 | 37 | 1 | 343 | 411 | 889 | 956 | 2.54e-12 | 69.3 |
Msa0202920 | AT1G65920.1 | 44.928 | 69 | 37 | 1 | 343 | 411 | 935 | 1002 | 2.60e-12 | 69.3 |
Msa0202920 | AT1G69710.1 | 38.793 | 116 | 64 | 3 | 298 | 407 | 918 | 1032 | 7.85e-12 | 67.8 |
Msa0202920 | AT1G69710.2 | 44.444 | 81 | 39 | 2 | 333 | 407 | 939 | 1019 | 8.46e-12 | 67.8 |
Find 156 sgRNAs with CRISPR-Local
Find 477 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAATTATACAAGTCCTAAA+AGG | 0.218992 | 2_1:+25866398 | Msa0202920:CDS |
GAATCTTCTTCGAGTTTCTT+TGG | 0.221800 | 2_1:-25863162 | None:intergenic |
CACTAATGGTTGAAACCTTT+GGG | 0.227599 | 2_1:-25869840 | None:intergenic |
GGAGATGGAAGCTAGGTTAA+AGG | 0.264445 | 2_1:+25863371 | Msa0202920:CDS |
TTGGTCAGTGGTGGTGTCAC+TGG | 0.272405 | 2_1:-25869688 | None:intergenic |
ATCAAAGGATTTGCTGCTAA+TGG | 0.285440 | 2_1:+25871100 | Msa0202920:three_prime_UTR |
CCGTTTCGGAGGCGGGTTGC+AGG | 0.299010 | 2_1:-25863288 | None:intergenic |
GCACTAATGGTTGAAACCTT+TGG | 0.308862 | 2_1:-25869841 | None:intergenic |
AGTGGTGGTGCTTGAGGAGG+AGG | 0.311170 | 2_1:+25863458 | Msa0202920:CDS |
ACCTCGTCTTCCGATCTTGC+TGG | 0.345526 | 2_1:-25869017 | None:intergenic |
CCGAGTTCGTCTTCGTCGTT+TGG | 0.357632 | 2_1:+25863417 | Msa0202920:CDS |
ATCTCAAGCGGATACGGTTC+AGG | 0.364829 | 2_1:+25863556 | Msa0202920:CDS |
GACATGGCATTGAAAGCTTC+AGG | 0.368472 | 2_1:+25863237 | Msa0202920:CDS |
ATCTGTCTTAGCGGCACTAA+TGG | 0.372394 | 2_1:-25869854 | None:intergenic |
AGTTTCGAAGGACGAGGACT+TGG | 0.379782 | 2_1:+25863343 | Msa0202920:CDS |
TAAGTCATACTGATAATGTT+TGG | 0.386791 | 2_1:-25869800 | None:intergenic |
GAGATGGAAGCTAGGTTAAA+GGG | 0.387212 | 2_1:+25863372 | Msa0202920:CDS |
AGAAGTGTGAATGCTGGTTT+TGG | 0.398547 | 2_1:-25866370 | None:intergenic |
GAGGAGAGTGGTGGTGCTTG+AGG | 0.403386 | 2_1:+25863452 | Msa0202920:CDS |
GGAGGAGGGCAAGGAGTGGG+TGG | 0.405266 | 2_1:+25863476 | Msa0202920:CDS |
TCGTCGTTTGGTGGAGGAAG+TGG | 0.408131 | 2_1:+25863429 | Msa0202920:CDS |
CGCAATTTATTCCGACCAAC+AGG | 0.409018 | 2_1:+25869724 | Msa0202920:CDS |
AGATCAGAAGAGTCAGGTTC+AGG | 0.420068 | 2_1:+25870040 | Msa0202920:CDS |
TTCTTGAAACTTATGAGTAA+TGG | 0.423645 | 2_1:+25871337 | Msa0202920:three_prime_UTR |
GGTCTATGCCAGGCGGCAAA+AGG | 0.431422 | 2_1:+25870016 | Msa0202920:CDS |
TCTTCCGATCTTGCTGGAGT+TGG | 0.435615 | 2_1:-25869011 | None:intergenic |
TCCTCAACCCATTCACTATC+CGG | 0.441147 | 2_1:-25869964 | None:intergenic |
CGACCAACAGGAATGGGAAT+GGG | 0.443580 | 2_1:+25869736 | Msa0202920:CDS |
CAAGGAGTGGGTGGCACAAG+TGG | 0.447331 | 2_1:+25863485 | Msa0202920:CDS |
GGAGGAGGAGGGCAAGGAGT+GGG | 0.449253 | 2_1:+25863473 | Msa0202920:CDS |
CGGAGCCACCGTTTCGGAGG+CGG | 0.452225 | 2_1:-25863296 | None:intergenic |
GTCGCGATATATTTAACAAA+TGG | 0.452492 | 2_1:+25868901 | Msa0202920:intron |
GGAGCCACCGTTTCGGAGGC+GGG | 0.454816 | 2_1:-25863295 | None:intergenic |
TGGGTGGCACAAGTGGAGCC+TGG | 0.455586 | 2_1:+25863492 | Msa0202920:CDS |
TTATTCCGACCAACAGGAAT+GGG | 0.458576 | 2_1:+25869730 | Msa0202920:CDS |
TGGTCAGTGGTGGTGTCACT+GGG | 0.468014 | 2_1:-25869687 | None:intergenic |
CTGACTCGGAGCCACCGTTT+CGG | 0.468024 | 2_1:-25863302 | None:intergenic |
GAGTTGGAAGCGGGAAGGCT+TGG | 0.477113 | 2_1:-25868995 | None:intergenic |
TTGGAAGCGGGAAGGCTTGG+CGG | 0.478088 | 2_1:-25868992 | None:intergenic |
GTAACGATCTCAAGCGGATA+CGG | 0.479163 | 2_1:+25863550 | Msa0202920:CDS |
GAGAGTGGTGGTGCTTGAGG+AGG | 0.480195 | 2_1:+25863455 | Msa0202920:CDS |
GGTGGTGCTTGAGGAGGAGG+AGG | 0.480691 | 2_1:+25863461 | Msa0202920:CDS |
GCTTGAGGAGGAGGAGGGCA+AGG | 0.481657 | 2_1:+25863467 | Msa0202920:CDS |
TCGTCTTCGTCGTTTGGTGG+AGG | 0.481845 | 2_1:+25863423 | Msa0202920:CDS |
TTGAGATCGTTACCACCTCT+TGG | 0.485547 | 2_1:-25863540 | None:intergenic |
GTTTCGAAGGACGAGGACTT+GGG | 0.486540 | 2_1:+25863344 | Msa0202920:CDS |
CTAGCGATCCGGATAGTGAA+TGG | 0.487751 | 2_1:+25869956 | Msa0202920:CDS |
GAGGAGAGGAATGGATTATG+TGG | 0.489464 | 2_1:-25862681 | None:intergenic |
ATCGAGGGACAGGTATTTGT+AGG | 0.491378 | 2_1:-25863008 | None:intergenic |
AAACAAAGGTGAAGAGGAGA+TGG | 0.493774 | 2_1:-25866433 | None:intergenic |
AAATTATACAAGTCCTAAAA+GGG | 0.493965 | 2_1:+25866399 | Msa0202920:CDS |
GAGGTGCAAGTAGCACCATT+TGG | 0.494112 | 2_1:-25871188 | None:intergenic |
TTGTAAATTATATATATAGC+TGG | 0.501059 | 2_1:+25871360 | Msa0202920:three_prime_UTR |
CTGCATTGAGTGTTGATCAT+AGG | 0.502333 | 2_1:-25869776 | None:intergenic |
TTAGTGGAAGAGGAGAGGAA+TGG | 0.504232 | 2_1:-25862690 | None:intergenic |
AAATGTGAAAATCGAGGGAC+AGG | 0.504793 | 2_1:-25863018 | None:intergenic |
TAATTGCTTCACTGATTCAC+TGG | 0.505057 | 2_1:-25871312 | None:intergenic |
CGTCGTTTGGTGGAGGAAGT+GGG | 0.507133 | 2_1:+25863430 | Msa0202920:CDS |
AAAGGGAGATCAGAAGAGTC+AGG | 0.507865 | 2_1:+25870034 | Msa0202920:CDS |
CTGGTGTTTATATTACCATC+AGG | 0.508052 | 2_1:+25869995 | Msa0202920:CDS |
TCTAGAGAAGCTGATCGCTC+TGG | 0.508451 | 2_1:+25869913 | Msa0202920:CDS |
CTTGTGAGATTATTTATCAA+AGG | 0.508544 | 2_1:+25871085 | Msa0202920:exon |
ATCTTGCTGGAGTTGGAAGC+GGG | 0.510894 | 2_1:-25869004 | None:intergenic |
CATTATCAGTATGACTTAAG+TGG | 0.511717 | 2_1:+25869805 | Msa0202920:CDS |
CCTGCAACCCGCCTCCGAAA+CGG | 0.512550 | 2_1:+25863288 | Msa0202920:CDS |
GGGAGATGCATGCTAGACTA+TGG | 0.512819 | 2_1:+25871027 | Msa0202920:CDS |
CAAGTATTGTGCATGTACTC+TGG | 0.516771 | 2_1:-25871066 | None:intergenic |
GATCTTGCTGGAGTTGGAAG+CGG | 0.517569 | 2_1:-25869005 | None:intergenic |
AAGGGGATATCAAGTGGAGA+AGG | 0.522652 | 2_1:+25863390 | Msa0202920:CDS |
TTTATTCCGACCAACAGGAA+TGG | 0.522733 | 2_1:+25869729 | Msa0202920:CDS |
GGTGGAGGAAGAGAGAACAA+TGG | 0.523132 | 2_1:-25862751 | None:intergenic |
GTCTATGCCAGGCGGCAAAA+GGG | 0.525569 | 2_1:+25870017 | Msa0202920:CDS |
CGACGTGATTAGATACCAAA+TGG | 0.526280 | 2_1:+25871173 | Msa0202920:three_prime_UTR |
TGATGATATATCTGTCTTAG+CGG | 0.526776 | 2_1:-25869863 | None:intergenic |
CGAGTCAGAAGTTTCTGACT+CGG | 0.528267 | 2_1:+25863317 | Msa0202920:CDS |
GGGGTAAGAAGTGTGAATGC+TGG | 0.528492 | 2_1:-25866376 | None:intergenic |
TAGTAATAATGTGGAGGGTG+TGG | 0.528842 | 2_1:-25863047 | None:intergenic |
TGGAGGAAGTGGGAGGAGAG+TGG | 0.530028 | 2_1:+25863440 | Msa0202920:CDS |
ATATATATAGCTGGTTACAT+TGG | 0.532557 | 2_1:+25871369 | Msa0202920:three_prime_UTR |
TACCCCATTCCCATTCCTGT+TGG | 0.532814 | 2_1:-25869739 | None:intergenic |
GCTTCCAACTCCAGCAAGAT+CGG | 0.534958 | 2_1:+25869007 | Msa0202920:CDS |
ACAAATGGCAAGCTCAAAGA+TGG | 0.542072 | 2_1:+25868916 | Msa0202920:CDS |
TGAGAATAGAAGTTTCAAGT+TGG | 0.544007 | 2_1:-25871441 | None:intergenic |
TGGAGCTTTACAATGTTCAA+AGG | 0.544250 | 2_1:+25868964 | Msa0202920:CDS |
ATTGCGTGATAGTTGCTCCT+TGG | 0.544275 | 2_1:-25869707 | None:intergenic |
CCATTCCCATTCCTGTTGGT+CGG | 0.545947 | 2_1:-25869735 | None:intergenic |
AGTTCGTCTTCGTCGTTTGG+TGG | 0.546508 | 2_1:+25863420 | Msa0202920:CDS |
GAGGAAGAGAGAACAATGGA+AGG | 0.547754 | 2_1:-25862747 | None:intergenic |
CGAGTCAGAAACTTCTGACT+CGG | 0.548367 | 2_1:-25863316 | None:intergenic |
GATGAGCAATGCTAGCGATC+CGG | 0.548410 | 2_1:+25869945 | Msa0202920:CDS |
TCCGGATAGTGAATGGGTTG+AGG | 0.549861 | 2_1:+25869963 | Msa0202920:CDS |
CCGACCAACAGGAATGGGAA+TGG | 0.551911 | 2_1:+25869735 | Msa0202920:CDS |
TTTGTTTAGTGGAAGAGGAG+AGG | 0.552383 | 2_1:-25862695 | None:intergenic |
TGCTGGAGTTGGAAGCGGGA+AGG | 0.553586 | 2_1:-25869000 | None:intergenic |
AGATGGAAGCTAGGTTAAAG+GGG | 0.554570 | 2_1:+25863373 | Msa0202920:CDS |
TGGATATAGTAATAATGTGG+AGG | 0.554943 | 2_1:-25863053 | None:intergenic |
GTGGGCAGAGAACTATGATA+AGG | 0.559533 | 2_1:+25868938 | Msa0202920:CDS |
AGGAAGTGGGAGGAGAGTGG+TGG | 0.559737 | 2_1:+25863443 | Msa0202920:CDS |
TTTCGAAGGACGAGGACTTG+GGG | 0.562065 | 2_1:+25863345 | Msa0202920:CDS |
TAAGAAAATGTGAAAATCGA+GGG | 0.562981 | 2_1:-25863023 | None:intergenic |
AATGGCAAGCTCAAAGATGG+TGG | 0.564411 | 2_1:+25868919 | Msa0202920:CDS |
TTTGTGTCTCTTCCAAGAGG+TGG | 0.565217 | 2_1:+25863528 | Msa0202920:CDS |
TTTAGGACTTGTATAATTTG+GGG | 0.566684 | 2_1:-25866395 | None:intergenic |
TGCGTAGCAGTGAGTGACTT+CGG | 0.567917 | 2_1:-25862980 | None:intergenic |
AGGAGGAGGAGGGCAAGGAG+TGG | 0.572298 | 2_1:+25863472 | Msa0202920:CDS |
AAGTACCATGTGCTTGACAT+TGG | 0.574498 | 2_1:-25862777 | None:intergenic |
TAGCGATCCGGATAGTGAAT+GGG | 0.574671 | 2_1:+25869957 | Msa0202920:CDS |
AGGTGGATATAGTAATAATG+TGG | 0.576024 | 2_1:-25863056 | None:intergenic |
CTAGTTATTATCTTCAATGT+GGG | 0.577366 | 2_1:+25871254 | Msa0202920:three_prime_UTR |
GCCGCCTGGCATAGACCTGA+TGG | 0.580566 | 2_1:-25870010 | None:intergenic |
GGATATAGTAATAATGTGGA+GGG | 0.581067 | 2_1:-25863052 | None:intergenic |
AGCAGTGAGTGACTTCGGTT+AGG | 0.581979 | 2_1:-25862975 | None:intergenic |
TGCTAATGGCTTACAAAATG+TGG | 0.594362 | 2_1:+25871114 | Msa0202920:three_prime_UTR |
AGGCGGGTTGCAGGAGTACA+CGG | 0.595322 | 2_1:-25863279 | None:intergenic |
ATTACCATCAGGTCTATGCC+AGG | 0.596075 | 2_1:+25870006 | Msa0202920:CDS |
CTGACTCGGAGAAGTTTCGA+AGG | 0.596187 | 2_1:+25863331 | Msa0202920:CDS |
GACCAACAGGAATGGGAATG+GGG | 0.596999 | 2_1:+25869737 | Msa0202920:CDS |
ACTAGTTATTATCTTCAATG+TGG | 0.597477 | 2_1:+25871253 | Msa0202920:three_prime_UTR |
AACTTCAAACAAAGGTGAAG+AGG | 0.597620 | 2_1:-25866439 | None:intergenic |
AGGTTAAAGGGGATATCAAG+TGG | 0.598201 | 2_1:+25863384 | Msa0202920:CDS |
GCTTGACATTGGAGTGGTGG+AGG | 0.601038 | 2_1:-25862766 | None:intergenic |
ACTCGGAGCCACCGTTTCGG+AGG | 0.606185 | 2_1:-25863299 | None:intergenic |
GATGCATGCTAGACTATGGT+GGG | 0.606317 | 2_1:+25871031 | Msa0202920:CDS |
CGGAGAAGTTTCGAAGGACG+AGG | 0.608398 | 2_1:+25863337 | Msa0202920:CDS |
AGGGGATATCAAGTGGAGAA+GGG | 0.608844 | 2_1:+25863391 | Msa0202920:CDS |
AGTGACACCACCACTGACCA+AGG | 0.612256 | 2_1:+25869690 | Msa0202920:CDS |
AGATGCATGCTAGACTATGG+TGG | 0.613768 | 2_1:+25871030 | Msa0202920:CDS |
AACAAAGGTGAAGAGGAGAT+GGG | 0.614438 | 2_1:-25866432 | None:intergenic |
AGTTGCTCCTTGGTCAGTGG+TGG | 0.614864 | 2_1:-25869697 | None:intergenic |
CCAAACGACGAAGACGAACT+CGG | 0.615906 | 2_1:-25863417 | None:intergenic |
ATGGCAAGCTCAAAGATGGT+GGG | 0.617913 | 2_1:+25868920 | Msa0202920:CDS |
GCAACCCGCCTCCGAAACGG+TGG | 0.618150 | 2_1:+25863291 | Msa0202920:CDS |
TGGCTTACAAAATGTGGAGG+TGG | 0.618859 | 2_1:+25871120 | Msa0202920:three_prime_UTR |
GTGGTGCTTGAGGAGGAGGA+GGG | 0.620273 | 2_1:+25863462 | Msa0202920:CDS |
TCCAGCAAGATCGGAAGACG+AGG | 0.623900 | 2_1:+25869016 | Msa0202920:CDS |
ACTAATGGTTGAAACCTTTG+GGG | 0.624759 | 2_1:-25869839 | None:intergenic |
TTAAGAAAATGTGAAAATCG+AGG | 0.632620 | 2_1:-25863024 | None:intergenic |
TGGTATGAACTCAACCCCAA+AGG | 0.637661 | 2_1:+25869825 | Msa0202920:CDS |
CCACTCCAATGTCAAGCACA+TGG | 0.640239 | 2_1:+25862772 | Msa0202920:five_prime_UTR |
TTCGAAGGACGAGGACTTGG+GGG | 0.642113 | 2_1:+25863346 | Msa0202920:CDS |
CGTGGTGAAACTTCAAACAA+AGG | 0.645866 | 2_1:-25866447 | None:intergenic |
TCATATCATCTTCATGCGCG+CGG | 0.647989 | 2_1:+25871225 | Msa0202920:three_prime_UTR |
GATAGTTGCTCCTTGGTCAG+TGG | 0.651758 | 2_1:-25869700 | None:intergenic |
AGAGAACTATGATAAGGTCA+TGG | 0.654539 | 2_1:+25868944 | Msa0202920:CDS |
TGTGCTTGACATTGGAGTGG+TGG | 0.658061 | 2_1:-25862769 | None:intergenic |
GTGTTGATCATAGGAATCTG+AGG | 0.660572 | 2_1:-25869767 | None:intergenic |
GAGGGACAGGTATTTGTAGG+CGG | 0.662593 | 2_1:-25863005 | None:intergenic |
TGGGTTGAGGAAGATGAACC+TGG | 0.668490 | 2_1:+25869976 | Msa0202920:CDS |
CTGATGGTAATATAAACACC+AGG | 0.676903 | 2_1:-25869994 | None:intergenic |
GAGGTGGTAACGATCTCAAG+CGG | 0.681808 | 2_1:+25863544 | Msa0202920:CDS |
CGTTTGGTGGAGGAAGTGGG+AGG | 0.689174 | 2_1:+25863433 | Msa0202920:CDS |
GACATGTCAGATAAAAGACA+TGG | 0.696747 | 2_1:+25863221 | Msa0202920:CDS |
ACAAAAGTAATCAAAACACC+AGG | 0.701850 | 2_1:-25863510 | None:intergenic |
ACCATCAGGTCTATGCCAGG+CGG | 0.710776 | 2_1:+25870009 | Msa0202920:CDS |
CCATGTGCTTGACATTGGAG+TGG | 0.711179 | 2_1:-25862772 | None:intergenic |
TAATGGCTTACAAAATGTGG+AGG | 0.731140 | 2_1:+25871117 | Msa0202920:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAAATTTTTATTTATTAA+AGG | + | chr2_1:25865915-25865934 | Msa0202920:intron | 0.0% |
!! | TAAAAAAAAAATTCAGAATT+AGG | - | chr2_1:25864453-25864472 | None:intergenic | 10.0% |
!! | AATTAAAAAAAATCAGAATT+AGG | - | chr2_1:25864609-25864628 | None:intergenic | 10.0% |
!!! | TTATAAAGTATAAATTTGTT+AGG | - | chr2_1:25866151-25866170 | None:intergenic | 10.0% |
!!! | CATTTTAAAACAAATTTTTT+TGG | - | chr2_1:25866895-25866914 | None:intergenic | 10.0% |
!!! | TAGTTTTAAAAGTAATATTT+TGG | - | chr2_1:25866998-25867017 | None:intergenic | 10.0% |
!! | AATATTCTAATAATTATGAT+TGG | - | chr2_1:25868447-25868466 | None:intergenic | 10.0% |
!! | ATAATTATTAGAATATTTCA+AGG | + | chr2_1:25868450-25868469 | Msa0202920:intron | 10.0% |
!!! | TTAACAAATTTGAATTTTTT+AGG | + | chr2_1:25870164-25870183 | Msa0202920:intron | 10.0% |
!!! | TAACAAATTTGAATTTTTTA+GGG | + | chr2_1:25870165-25870184 | Msa0202920:intron | 10.0% |
!!! | GTTTTTATTATTTTGTTTAG+TGG | - | chr2_1:25862709-25862728 | None:intergenic | 15.0% |
!! | GAAAATTAATTAGTAAAATG+AGG | - | chr2_1:25862909-25862928 | None:intergenic | 15.0% |
!!! | TTTTTGGTAAACATTTTATT+TGG | - | chr2_1:25864283-25864302 | None:intergenic | 15.0% |
!!! | AAGTGAATTTTATCTTATAA+CGG | - | chr2_1:25864502-25864521 | None:intergenic | 15.0% |
!!! | TATAACAAAAACAAAGTTTT+TGG | + | chr2_1:25864703-25864722 | Msa0202920:intron | 15.0% |
!!! | ATTTTTGTCAGATAATAATT+AGG | + | chr2_1:25864899-25864918 | Msa0202920:intron | 15.0% |
!! | TAGGATATTCTATTAAATTA+AGG | + | chr2_1:25864918-25864937 | Msa0202920:intron | 15.0% |
!! | AGGATATTCTATTAAATTAA+GGG | + | chr2_1:25864919-25864938 | Msa0202920:intron | 15.0% |
!! | AATATAATTTACCAAACAAA+AGG | + | chr2_1:25865069-25865088 | Msa0202920:intron | 15.0% |
!!! | AGATTTTGTTTTCTAAATTT+AGG | - | chr2_1:25865477-25865496 | None:intergenic | 15.0% |
!!! | AACAATGTAAAATATTTTGA+TGG | - | chr2_1:25866011-25866030 | None:intergenic | 15.0% |
!!! | TTTTATTTATGCAATTTGAT+GGG | + | chr2_1:25866672-25866691 | Msa0202920:intron | 15.0% |
!!! | TTTTGTCTTGTATATAATTT+AGG | - | chr2_1:25866721-25866740 | None:intergenic | 15.0% |
!! | ATAAAAAGTTATTATTGCAT+TGG | - | chr2_1:25866935-25866954 | None:intergenic | 15.0% |
!! | AAATTATCCTTATTAACTAT+TGG | - | chr2_1:25867022-25867041 | None:intergenic | 15.0% |
!! | AATAGTTAATAAGGATAATT+TGG | + | chr2_1:25867021-25867040 | Msa0202920:intron | 15.0% |
!!! | GTAATATACTTTTTTTTTGA+AGG | - | chr2_1:25867299-25867318 | None:intergenic | 15.0% |
!!! | CTAATTTTTTTTTTTTTCGA+AGG | + | chr2_1:25867612-25867631 | Msa0202920:intron | 15.0% |
!!! | TTTGAGTTGATTTTATATTA+TGG | + | chr2_1:25867739-25867758 | Msa0202920:intron | 15.0% |
!!! | TTGAGTTGATTTTATATTAT+GGG | + | chr2_1:25867740-25867759 | Msa0202920:intron | 15.0% |
!!! | ACTAAATGTTTTATAAGTTA+TGG | + | chr2_1:25867836-25867855 | Msa0202920:intron | 15.0% |
!!! | CAAATTCAACTTAAAAATTT+TGG | + | chr2_1:25868377-25868396 | Msa0202920:intron | 15.0% |
!!! | TATAGTTATCATTTTTTTTC+TGG | + | chr2_1:25868795-25868814 | Msa0202920:intron | 15.0% |
!!! | ATAGTTATCATTTTTTTTCT+GGG | + | chr2_1:25868796-25868815 | Msa0202920:intron | 15.0% |
!!! | TTAAATATATTCTTTTCACA+TGG | - | chr2_1:25869143-25869162 | None:intergenic | 15.0% |
!! | TATGATTTCAAAAATTTGAT+CGG | - | chr2_1:25869526-25869545 | None:intergenic | 15.0% |
!! | ATTCTTATATCTATAACTAT+AGG | - | chr2_1:25869589-25869608 | None:intergenic | 15.0% |
!!! | TAAATATCTAATAGTAGTTT+TGG | - | chr2_1:25870375-25870394 | None:intergenic | 15.0% |
!! | TTGTAAATTATATATATAGC+TGG | + | chr2_1:25871360-25871379 | Msa0202920:three_prime_UTR | 15.0% |
!! | ATGAAATAAATAGTTATGCA+TGG | - | chr2_1:25864739-25864758 | None:intergenic | 20.0% |
!!! | TAAAAAAGCTGTTTCAAAAT+TGG | - | chr2_1:25864780-25864799 | None:intergenic | 20.0% |
!! | AAGAAAAAAACACTATTTCA+TGG | - | chr2_1:25864815-25864834 | None:intergenic | 20.0% |
!!! | TAGTGTTTTTTTCTTAGAAT+TGG | + | chr2_1:25864820-25864839 | Msa0202920:intron | 20.0% |
!!! | AGTGTTTTTTTCTTAGAATT+GGG | + | chr2_1:25864821-25864840 | Msa0202920:intron | 20.0% |
!!! | TTTTACAAGAAAATGTGAAA+AGG | - | chr2_1:25865819-25865838 | None:intergenic | 20.0% |
!!! | TTTTCACATTTTCTTGTAAA+AGG | + | chr2_1:25865818-25865837 | Msa0202920:intron | 20.0% |
!! | TAAAACACAATAAGAAGAAA+TGG | + | chr2_1:25865855-25865874 | Msa0202920:intron | 20.0% |
!!! | AAATATTTTGATGGTGTATT+AGG | - | chr2_1:25866002-25866021 | None:intergenic | 20.0% |
!! | TTGTTGTCAATCAATTATAA+TGG | + | chr2_1:25866026-25866045 | Msa0202920:intron | 20.0% |
!! | AACGTAGTTATAATTAAAGT+TGG | - | chr2_1:25866070-25866089 | None:intergenic | 20.0% |
!!! | TATTGATTATGATTTATCGA+CGG | + | chr2_1:25866102-25866121 | Msa0202920:intron | 20.0% |
!!! | TTTTAGGACTTGTATAATTT+GGG | - | chr2_1:25866399-25866418 | None:intergenic | 20.0% |
!! | AAATTATACAAGTCCTAAAA+GGG | + | chr2_1:25866399-25866418 | Msa0202920:CDS | 20.0% |
!! | TCCTAAAGAAAAATTTATTC+TGG | + | chr2_1:25866498-25866517 | Msa0202920:CDS | 20.0% |
!! | AAGACAAAAACTGTTAATAT+AGG | - | chr2_1:25866654-25866673 | None:intergenic | 20.0% |
!!! | CTTTTATTTATGCAATTTGA+TGG | + | chr2_1:25866671-25866690 | Msa0202920:intron | 20.0% |
!! | TTTATTTATGCAATTTGATG+GGG | + | chr2_1:25866673-25866692 | Msa0202920:intron | 20.0% |
!! | TATCTATTTATCACTTTGTT+AGG | - | chr2_1:25866769-25866788 | None:intergenic | 20.0% |
!! | AAGTGATAAATAGATAACAT+AGG | + | chr2_1:25866773-25866792 | Msa0202920:intron | 20.0% |
!! | TAGTTTAATGACTAATAAGT+GGG | - | chr2_1:25866838-25866857 | None:intergenic | 20.0% |
!! | ATAGTTTAATGACTAATAAG+TGG | - | chr2_1:25866839-25866858 | None:intergenic | 20.0% |
!! | AAACTAACCAATAGTTAATA+AGG | + | chr2_1:25867012-25867031 | Msa0202920:intron | 20.0% |
!!! | TAAGTTGAGAGTATTAATTA+AGG | + | chr2_1:25867146-25867165 | Msa0202920:intron | 20.0% |
!!! | TTATTACAACCGTTTTTAAA+AGG | + | chr2_1:25867181-25867200 | Msa0202920:intron | 20.0% |
!!! | AGTTTGAAACCTTTTAAAAA+CGG | - | chr2_1:25867193-25867212 | None:intergenic | 20.0% |
!! | TATGTAAGAGATTAAATTGA+CGG | - | chr2_1:25867398-25867417 | None:intergenic | 20.0% |
!!! | AGAACTAAATTTATCCATTT+TGG | + | chr2_1:25867641-25867660 | Msa0202920:intron | 20.0% |
!! | ATATATCATAAATTTGGGAA+GGG | - | chr2_1:25867802-25867821 | None:intergenic | 20.0% |
!! | TATATATCATAAATTTGGGA+AGG | - | chr2_1:25867803-25867822 | None:intergenic | 20.0% |
!!! | ATGTTTTATAAGTTATGGTA+TGG | + | chr2_1:25867841-25867860 | Msa0202920:intron | 20.0% |
!! | AAGACAAATATATGAAACTT+AGG | - | chr2_1:25867875-25867894 | None:intergenic | 20.0% |
!! | CACAAATTTAATAAATAGTG+TGG | + | chr2_1:25868056-25868075 | Msa0202920:intron | 20.0% |
!!! | AACAAATTTTAGATATAGTG+TGG | + | chr2_1:25868094-25868113 | Msa0202920:intron | 20.0% |
!! | ATTCTAATAATTATGATTGG+TGG | - | chr2_1:25868444-25868463 | None:intergenic | 20.0% |
!!! | CATTTTGCTACAATATATAA+AGG | - | chr2_1:25868540-25868559 | None:intergenic | 20.0% |
!! | TTATATATTGTAGCAAAATG+TGG | + | chr2_1:25868540-25868559 | Msa0202920:intron | 20.0% |
!!! | TATTTGTTATTTCTTCGAAT+TGG | + | chr2_1:25869378-25869397 | Msa0202920:intron | 20.0% |
!! | TTTATAACAAGCTTAAGAAA+CGG | - | chr2_1:25870950-25870969 | None:intergenic | 20.0% |
!!! | TTAAGCTTGTTATAAATCTA+CGG | + | chr2_1:25870954-25870973 | Msa0202920:intron | 20.0% |
!!! | ATTATTTTGTTTAGTGGAAG+AGG | - | chr2_1:25862703-25862722 | None:intergenic | 25.0% |
! | TAAGAAAATGTGAAAATCGA+GGG | - | chr2_1:25863026-25863045 | None:intergenic | 25.0% |
! | TTAAGAAAATGTGAAAATCG+AGG | - | chr2_1:25863027-25863046 | None:intergenic | 25.0% |
! | AGAAATGAAACGACAAAAAA+TGG | - | chr2_1:25863082-25863101 | None:intergenic | 25.0% |
!! | AATTTTTACGTGTTAACCTT+TGG | - | chr2_1:25863663-25863682 | None:intergenic | 25.0% |
!! | TGTCTTTTCTTTTTCTATGT+CGG | + | chr2_1:25863911-25863930 | Msa0202920:intron | 25.0% |
! | ACGTAAAATTAAGCAATTAC+TGG | - | chr2_1:25864107-25864126 | None:intergenic | 25.0% |
!! | GAAATTCATCATTCATTTTG+AGG | + | chr2_1:25864127-25864146 | Msa0202920:intron | 25.0% |
!!! | ACAATTGCTTTTCAACTTTT+TGG | - | chr2_1:25864299-25864318 | None:intergenic | 25.0% |
! | AAAAAGTTGAAAAGCAATTG+TGG | + | chr2_1:25864298-25864317 | Msa0202920:intron | 25.0% |
! | TGGAATTGAGTTAAGAATTT+AGG | + | chr2_1:25864318-25864337 | Msa0202920:intron | 25.0% |
!!! | TCTTTTTTTCTGAAAGAATG+TGG | + | chr2_1:25864346-25864365 | Msa0202920:intron | 25.0% |
!! | TTTTTGACCAAAAAGAACTT+CGG | + | chr2_1:25864375-25864394 | Msa0202920:intron | 25.0% |
!! | TAAATATCCGAAGTTCTTTT+TGG | - | chr2_1:25864385-25864404 | None:intergenic | 25.0% |
! | ATGAAATCAATAATCATGCA+TGG | - | chr2_1:25864411-25864430 | None:intergenic | 25.0% |
!! | ATAACGGAAAACTATTTCTT+TGG | - | chr2_1:25864486-25864505 | None:intergenic | 25.0% |
!! | GTTAGTTATATCCTTTTGTT+TGG | - | chr2_1:25865083-25865102 | None:intergenic | 25.0% |
!!! | AATCTACATCTAGTTTTCTT+TGG | - | chr2_1:25865121-25865140 | None:intergenic | 25.0% |
! | TTTAACATCTCAATATCACA+TGG | + | chr2_1:25865252-25865271 | Msa0202920:intron | 25.0% |
!!! | GGTTTGTTTATTTGTTTTCA+AGG | + | chr2_1:25865273-25865292 | Msa0202920:intron | 25.0% |
!! | CTTTTATGCAAGTTTGAATT+TGG | + | chr2_1:25865400-25865419 | Msa0202920:intron | 25.0% |
! | TCTTAGAAATTAGCTGAAAT+GGG | - | chr2_1:25865570-25865589 | None:intergenic | 25.0% |
! | CATCTAAATGTTAGAGTTTA+AGG | + | chr2_1:25865620-25865639 | Msa0202920:intron | 25.0% |
! | AATTTGACCAAAAATGTGTT+TGG | - | chr2_1:25865646-25865665 | None:intergenic | 25.0% |
!!! | AACACATTTTTGGTCAAATT+TGG | + | chr2_1:25865646-25865665 | Msa0202920:intron | 25.0% |
!!! | TCTTGTAAAAGGAGTTTTTT+TGG | + | chr2_1:25865829-25865848 | Msa0202920:intron | 25.0% |
!!! | CTTGTAAAAGGAGTTTTTTT+GGG | + | chr2_1:25865830-25865849 | Msa0202920:intron | 25.0% |
! | ACAAATTATGGGAGAAATAT+AGG | - | chr2_1:25866323-25866342 | None:intergenic | 25.0% |
!! | ATATTTCTCCCATAATTTGT+AGG | + | chr2_1:25866323-25866342 | Msa0202920:intron | 25.0% |
! | TTGTTCAACCTACAAATTAT+GGG | - | chr2_1:25866334-25866353 | None:intergenic | 25.0% |
!! | TTTAGGACTTGTATAATTTG+GGG | - | chr2_1:25866398-25866417 | None:intergenic | 25.0% |
!!! | CTTTTAGGACTTGTATAATT+TGG | - | chr2_1:25866400-25866419 | None:intergenic | 25.0% |
! | CAAATTATACAAGTCCTAAA+AGG | + | chr2_1:25866398-25866417 | Msa0202920:CDS | 25.0% |
!!! | TTTTCTTTAGGAACACTTTT+GGG | - | chr2_1:25866490-25866509 | None:intergenic | 25.0% |
!!! | TTTTTCTTTAGGAACACTTT+TGG | - | chr2_1:25866491-25866510 | None:intergenic | 25.0% |
!! | GCCAGAATAAATTTTTCTTT+AGG | - | chr2_1:25866502-25866521 | None:intergenic | 25.0% |
! | TCTTGTATATAATTTAGGAG+TGG | - | chr2_1:25866716-25866735 | None:intergenic | 25.0% |
!! | TATACTTGTTACACTATACT+TGG | - | chr2_1:25867262-25867281 | None:intergenic | 25.0% |
! | ATATGAAAAATCTGTCTTGT+CGG | + | chr2_1:25867353-25867372 | Msa0202920:intron | 25.0% |
!!! | TTTTTTGAAATCCATCTTGT+TGG | - | chr2_1:25867434-25867453 | None:intergenic | 25.0% |
!!! | TTGATATCCAACTTCTTTTT+TGG | + | chr2_1:25867765-25867784 | Msa0202920:intron | 25.0% |
!!! | TGATATCCAACTTCTTTTTT+GGG | + | chr2_1:25867766-25867785 | Msa0202920:intron | 25.0% |
! | TTAATACCCAAAAAAGAAGT+TGG | - | chr2_1:25867775-25867794 | None:intergenic | 25.0% |
!! | AAATTTGTGATCTGAAATTC+AGG | - | chr2_1:25868045-25868064 | None:intergenic | 25.0% |
! | TTAATAAATAGTGTGGTCTT+AGG | + | chr2_1:25868063-25868082 | Msa0202920:intron | 25.0% |
! | AACACAATCATACGATATAA+TGG | + | chr2_1:25868410-25868429 | Msa0202920:intron | 25.0% |
! | TTAGAATATTTCAAGGTTAG+AGG | + | chr2_1:25868457-25868476 | Msa0202920:intron | 25.0% |
! | TGCAACATCATAAAACAAAA+CGG | + | chr2_1:25868749-25868768 | Msa0202920:intron | 25.0% |
!! | AAATTCTCACTTTGGTAATT+TGG | + | chr2_1:25869040-25869059 | Msa0202920:intron | 25.0% |
! | CAAAGTATAAATCTTCACTT+TGG | + | chr2_1:25869095-25869114 | Msa0202920:intron | 25.0% |
!!! | TGAATTGTTGTTGGAATTTT+AGG | + | chr2_1:25869469-25869488 | Msa0202920:intron | 25.0% |
! | ATCATATATTAGTCGCATAT+TGG | + | chr2_1:25869540-25869559 | Msa0202920:intron | 25.0% |
!! | TAAGTCATACTGATAATGTT+TGG | - | chr2_1:25869803-25869822 | None:intergenic | 25.0% |
!!! | AATTTGAATTTTTTAGGGTC+TGG | + | chr2_1:25870170-25870189 | Msa0202920:intron | 25.0% |
!! | ATATTTTCACTTCACAAAAC+AGG | - | chr2_1:25870258-25870277 | None:intergenic | 25.0% |
!! | AGATAGTTAATGTCATTTCA+TGG | + | chr2_1:25870415-25870434 | Msa0202920:intron | 25.0% |
! | TTAACTCTTCAATTCATAAG+AGG | + | chr2_1:25870541-25870560 | Msa0202920:intron | 25.0% |
! | TTGAATATTGAAGTCACATT+TGG | - | chr2_1:25870847-25870866 | None:intergenic | 25.0% |
! | CTTGTGAGATTATTTATCAA+AGG | + | chr2_1:25871085-25871104 | Msa0202920:exon | 25.0% |
! | TATGAAGTTCAAAAAGATAG+AGG | - | chr2_1:25871210-25871229 | None:intergenic | 25.0% |
! | ACTAGTTATTATCTTCAATG+TGG | + | chr2_1:25871253-25871272 | Msa0202920:three_prime_UTR | 25.0% |
! | CTAGTTATTATCTTCAATGT+GGG | + | chr2_1:25871254-25871273 | Msa0202920:three_prime_UTR | 25.0% |
! | TTCTTGAAACTTATGAGTAA+TGG | + | chr2_1:25871337-25871356 | Msa0202920:three_prime_UTR | 25.0% |
! | ATATATATAGCTGGTTACAT+TGG | + | chr2_1:25871369-25871388 | Msa0202920:three_prime_UTR | 25.0% |
GGATATAGTAATAATGTGGA+GGG | - | chr2_1:25863055-25863074 | None:intergenic | 30.0% | |
TGGATATAGTAATAATGTGG+AGG | - | chr2_1:25863056-25863075 | None:intergenic | 30.0% | |
AGGTGGATATAGTAATAATG+TGG | - | chr2_1:25863059-25863078 | None:intergenic | 30.0% | |
AATGAAACGACAAAAAATGG+AGG | - | chr2_1:25863079-25863098 | None:intergenic | 30.0% | |
!!! | AGCATGTTTTTTGGTTCTTT+TGG | - | chr2_1:25863126-25863145 | None:intergenic | 30.0% |
!!! | ATGCATGTAAGCATGTTTTT+TGG | - | chr2_1:25863135-25863154 | None:intergenic | 30.0% |
ACAAAAGTAATCAAAACACC+AGG | - | chr2_1:25863513-25863532 | None:intergenic | 30.0% | |
TTAGAGGTCAATGAATGATA+TGG | + | chr2_1:25863828-25863847 | Msa0202920:intron | 30.0% | |
CCATATTCAATCAAAGAAGA+GGG | - | chr2_1:25863855-25863874 | None:intergenic | 30.0% | |
! | TTTTCTTTTTCTATGTCGGA+GGG | + | chr2_1:25863915-25863934 | Msa0202920:intron | 30.0% |
GAACTGTAAAAGAAGAGAAA+AGG | - | chr2_1:25864007-25864026 | None:intergenic | 30.0% | |
!! | CAATTACTGGCTTTAAGATA+GGG | - | chr2_1:25864094-25864113 | None:intergenic | 30.0% |
ATGAAATCAATAATCGTGCA+TGG | - | chr2_1:25864573-25864592 | None:intergenic | 30.0% | |
!!! | ATTGTTTTTGACCAAGAAAG+AGG | + | chr2_1:25864626-25864645 | Msa0202920:intron | 30.0% |
ACAAATAGAATCCTCTTTCT+TGG | - | chr2_1:25864640-25864659 | None:intergenic | 30.0% | |
AAAAAAATCCAAAACAGACG+TGG | + | chr2_1:25865223-25865242 | Msa0202920:intron | 30.0% | |
! | AATTTAATCCACGTCTGTTT+TGG | - | chr2_1:25865234-25865253 | None:intergenic | 30.0% |
CTCTTAGAAATTAGCTGAAA+TGG | - | chr2_1:25865571-25865590 | None:intergenic | 30.0% | |
!! | TTTAAGGCCAAACACATTTT+TGG | + | chr2_1:25865636-25865655 | Msa0202920:intron | 30.0% |
!! | TTTTTGGTCAAATTTGGACT+TGG | + | chr2_1:25865652-25865671 | Msa0202920:intron | 30.0% |
GGTACTAGAAAATTGAACTT+AGG | - | chr2_1:25865764-25865783 | None:intergenic | 30.0% | |
AATGCTTATGTTTGGTATCA+CGG | - | chr2_1:25865965-25865984 | None:intergenic | 30.0% | |
TCTTATCCAATGCTTATGTT+TGG | - | chr2_1:25865973-25865992 | None:intergenic | 30.0% | |
CTTGTTCAACCTACAAATTA+TGG | - | chr2_1:25866335-25866354 | None:intergenic | 30.0% | |
TGTGTTAGGAACCTTTAAAT+TGG | + | chr2_1:25866552-25866571 | Msa0202920:intron | 30.0% | |
GTGTTAGGAACCTTTAAATT+GGG | + | chr2_1:25866553-25866572 | Msa0202920:intron | 30.0% | |
! | GTAATGTGCAGAGTATTAAT+TGG | - | chr2_1:25866973-25866992 | None:intergenic | 30.0% |
!!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr2_1:25867103-25867122 | None:intergenic | 30.0% |
TTAAATATAGAAAGGTGACG+TGG | - | chr2_1:25867696-25867715 | None:intergenic | 30.0% | |
TTTAGATATAGTGTGGTCTT+AGG | + | chr2_1:25868101-25868120 | Msa0202920:intron | 30.0% | |
GGTAATTGACATCAAAAGTT+TGG | + | chr2_1:25868179-25868198 | Msa0202920:intron | 30.0% | |
!! | AGTTGAATTTGCAGTTTTAG+TGG | - | chr2_1:25868368-25868387 | None:intergenic | 30.0% |
CATACGATATAATGGCTAAT+TGG | + | chr2_1:25868418-25868437 | Msa0202920:intron | 30.0% | |
! | AATTTAAAATCGTGAATCGC+GGG | - | chr2_1:25868483-25868502 | None:intergenic | 30.0% |
! | CAATTTAAAATCGTGAATCG+CGG | - | chr2_1:25868484-25868503 | None:intergenic | 30.0% |
! | CGATTCACGATTTTAAATTG+TGG | + | chr2_1:25868484-25868503 | Msa0202920:intron | 30.0% |
!!! | GATTTTCGAGTTTTTCTCAA+TGG | - | chr2_1:25868605-25868624 | None:intergenic | 30.0% |
GCAACATCATAAAACAAAAC+GGG | + | chr2_1:25868750-25868769 | Msa0202920:intron | 30.0% | |
CAACATCATAAAACAAAACG+GGG | + | chr2_1:25868751-25868770 | Msa0202920:intron | 30.0% | |
GTCGCGATATATTTAACAAA+TGG | + | chr2_1:25868901-25868920 | Msa0202920:intron | 30.0% | |
ATAAATCTTCACTTTGGTCT+AGG | + | chr2_1:25869101-25869120 | Msa0202920:intron | 30.0% | |
!! | CACATGGAAAAAGTATCAAT+TGG | - | chr2_1:25869127-25869146 | None:intergenic | 30.0% |
TTGTCTCACTAACAAAAACA+AGG | - | chr2_1:25869290-25869309 | None:intergenic | 30.0% | |
!! | TTTCTTCGTTTTTGTCGAAT+CGG | - | chr2_1:25869327-25869346 | None:intergenic | 30.0% |
!! | CAAATATGAGTTGAGTTTTG+AGG | + | chr2_1:25869349-25869368 | Msa0202920:intron | 30.0% |
CAACAATTCACTGTACTTAT+AGG | - | chr2_1:25869459-25869478 | None:intergenic | 30.0% | |
TAAGTACAGTGAATTGTTGT+TGG | + | chr2_1:25869460-25869479 | Msa0202920:intron | 30.0% | |
GATTTCAAAAATTTGATCGG+TGG | - | chr2_1:25869523-25869542 | None:intergenic | 30.0% | |
CATTATCAGTATGACTTAAG+TGG | + | chr2_1:25869805-25869824 | Msa0202920:CDS | 30.0% | |
TGATGATATATCTGTCTTAG+CGG | - | chr2_1:25869866-25869885 | None:intergenic | 30.0% | |
TATGCTTTGTACCAATTCTT+TGG | + | chr2_1:25870063-25870082 | Msa0202920:intron | 30.0% | |
ATAGAGTCTAACCAAAGAAT+TGG | - | chr2_1:25870077-25870096 | None:intergenic | 30.0% | |
!!! | GTAGTTTTGGTGAACAATTT+GGG | - | chr2_1:25870362-25870381 | None:intergenic | 30.0% |
!!! | AGTAGTTTTGGTGAACAATT+TGG | - | chr2_1:25870363-25870382 | None:intergenic | 30.0% |
TCTTCAATTCATAAGAGGAA+AGG | + | chr2_1:25870546-25870565 | Msa0202920:intron | 30.0% | |
CAATGTAATACGATTGAATG+TGG | + | chr2_1:25870737-25870756 | Msa0202920:intron | 30.0% | |
AAATTTACACGCAGTAACTT+TGG | - | chr2_1:25870795-25870814 | None:intergenic | 30.0% | |
TGTTACAGTCGAGAAAAATT+TGG | + | chr2_1:25871005-25871024 | Msa0202920:intron | 30.0% | |
GTTACAGTCGAGAAAAATTT+GGG | + | chr2_1:25871006-25871025 | Msa0202920:intron | 30.0% | |
TTACAGTCGAGAAAAATTTG+GGG | + | chr2_1:25871007-25871026 | Msa0202920:intron | 30.0% | |
! | TGAGAATAGAAGTTTCAAGT+TGG | - | chr2_1:25871444-25871463 | None:intergenic | 30.0% |
! | GAATCTTCTTCGAGTTTCTT+TGG | - | chr2_1:25863165-25863184 | None:intergenic | 35.0% |
GACATGTCAGATAAAAGACA+TGG | + | chr2_1:25863221-25863240 | Msa0202920:CDS | 35.0% | |
GTTAACCTTTGGATTCTTTG+AGG | - | chr2_1:25863652-25863671 | None:intergenic | 35.0% | |
! | ATTCGATCCAAATATCGACT+AGG | + | chr2_1:25863730-25863749 | Msa0202920:intron | 35.0% |
TCAACTGATAGCAGATGTAT+TGG | + | chr2_1:25863772-25863791 | Msa0202920:intron | 35.0% | |
!!! | TTGTGATGTCCTTTTGAGAT+TGG | + | chr2_1:25863796-25863815 | Msa0202920:intron | 35.0% |
CCCTCTTCTTTGATTGAATA+TGG | + | chr2_1:25863852-25863871 | Msa0202920:intron | 35.0% | |
GCCATATTCAATCAAAGAAG+AGG | - | chr2_1:25863856-25863875 | None:intergenic | 35.0% | |
CTTTGATTGAATATGGCTAG+TGG | + | chr2_1:25863859-25863878 | Msa0202920:intron | 35.0% | |
! | GTGATGATGATAGTGAGTAA+TGG | + | chr2_1:25863886-25863905 | Msa0202920:intron | 35.0% |
! | CTTTTCTTTTTCTATGTCGG+AGG | + | chr2_1:25863914-25863933 | Msa0202920:intron | 35.0% |
!! | GCAATTACTGGCTTTAAGAT+AGG | - | chr2_1:25864095-25864114 | None:intergenic | 35.0% |
AATTACCGTGTCTTTCTGAT+TGG | + | chr2_1:25864223-25864242 | Msa0202920:intron | 35.0% | |
AGAAACCAATCAGAAAGACA+CGG | - | chr2_1:25864231-25864250 | None:intergenic | 35.0% | |
!!! | CTACATCTAGTTTTCTTTGG+AGG | - | chr2_1:25865118-25865137 | None:intergenic | 35.0% |
GATCCTTCAACAAACAATTG+AGG | + | chr2_1:25865431-25865450 | Msa0202920:intron | 35.0% | |
! | AAGCCTCAATTGTTTGTTGA+AGG | - | chr2_1:25865437-25865456 | None:intergenic | 35.0% |
GTCAAATTTGGACTTGGATT+GGG | + | chr2_1:25865658-25865677 | Msa0202920:intron | 35.0% | |
TCAAATTTGGACTTGGATTG+GGG | + | chr2_1:25865659-25865678 | Msa0202920:intron | 35.0% | |
! | TTTCTAGTACCATGAGTGAT+AGG | + | chr2_1:25865773-25865792 | Msa0202920:intron | 35.0% |
GTGATACCAAACATAAGCAT+TGG | + | chr2_1:25865964-25865983 | Msa0202920:intron | 35.0% | |
!!! | ATGCTGGTTTTGGTATGAAA+TGG | - | chr2_1:25866363-25866382 | None:intergenic | 35.0% |
!! | AAGTCCTAAAAGGGTTTTGT+GGG | + | chr2_1:25866408-25866427 | Msa0202920:CDS | 35.0% |
AACTTCAAACAAAGGTGAAG+AGG | - | chr2_1:25866442-25866461 | None:intergenic | 35.0% | |
!! | TTTGGGATTGCTTTTAGCAA+AGG | - | chr2_1:25866473-25866492 | None:intergenic | 35.0% |
AACGACATGACCCAATTTAA+AGG | - | chr2_1:25866566-25866585 | None:intergenic | 35.0% | |
TTAAATTGGGTCATGTCGTT+TGG | + | chr2_1:25866566-25866585 | Msa0202920:intron | 35.0% | |
TTTCTCATATCTCTTCATGC+CGG | + | chr2_1:25866610-25866629 | Msa0202920:intron | 35.0% | |
ACAAGACAAAATGTGAACCT+AGG | + | chr2_1:25866730-25866749 | Msa0202920:intron | 35.0% | |
!! | AAGCGACACTCATTTTGAAA+CGG | - | chr2_1:25866869-25866888 | None:intergenic | 35.0% |
! | TGTGCAGAGTATTAATTGGA+GGG | - | chr2_1:25866969-25866988 | None:intergenic | 35.0% |
! | ATGTGCAGAGTATTAATTGG+AGG | - | chr2_1:25866970-25866989 | None:intergenic | 35.0% |
!!! | GACACTCATTTTGAAACAGA+GGG | + | chr2_1:25867108-25867127 | Msa0202920:intron | 35.0% |
AATAGCAAGAACCAACAAGA+TGG | + | chr2_1:25867420-25867439 | Msa0202920:intron | 35.0% | |
GACAAACAGAATCACTTATG+TGG | - | chr2_1:25868013-25868032 | None:intergenic | 35.0% | |
CTAGACATTCAAAAGCAAGT+GGG | - | chr2_1:25868206-25868225 | None:intergenic | 35.0% | |
TCTAGACATTCAAAAGCAAG+TGG | - | chr2_1:25868207-25868226 | None:intergenic | 35.0% | |
GTCTAGACAACTTCATTGTA+TGG | + | chr2_1:25868220-25868239 | Msa0202920:intron | 35.0% | |
CAATGGCATTGTATTAGCAA+TGG | - | chr2_1:25868588-25868607 | None:intergenic | 35.0% | |
TATTGTGACCGCAATTACAA+TGG | + | chr2_1:25868629-25868648 | Msa0202920:intron | 35.0% | |
CAAGTCAACCATTGTAATTG+CGG | - | chr2_1:25868640-25868659 | None:intergenic | 35.0% | |
AGAGAACTATGATAAGGTCA+TGG | + | chr2_1:25868944-25868963 | Msa0202920:CDS | 35.0% | |
TGGAGCTTTACAATGTTCAA+AGG | + | chr2_1:25868964-25868983 | Msa0202920:CDS | 35.0% | |
AATTTGGTATGCAGATGCAT+AGG | + | chr2_1:25869056-25869075 | Msa0202920:intron | 35.0% | |
TAGTGAGACAATGACTTGAT+TGG | + | chr2_1:25869299-25869318 | Msa0202920:intron | 35.0% | |
!! | AAGTTGATGTCTCACTTGTT+AGG | + | chr2_1:25869409-25869428 | Msa0202920:intron | 35.0% |
! | AGTTGATGTCTCACTTGTTA+GGG | + | chr2_1:25869410-25869429 | Msa0202920:intron | 35.0% |
ACTAATGGTTGAAACCTTTG+GGG | - | chr2_1:25869842-25869861 | None:intergenic | 35.0% | |
CACTAATGGTTGAAACCTTT+GGG | - | chr2_1:25869843-25869862 | None:intergenic | 35.0% | |
CTGATGGTAATATAAACACC+AGG | - | chr2_1:25869997-25870016 | None:intergenic | 35.0% | |
CTGGTGTTTATATTACCATC+AGG | + | chr2_1:25869995-25870014 | Msa0202920:CDS | 35.0% | |
GAATGCAGACAATGCAAATT+AGG | - | chr2_1:25870130-25870149 | None:intergenic | 35.0% | |
AACACGACTAAGGTTCAAAT+TGG | - | chr2_1:25870217-25870236 | None:intergenic | 35.0% | |
ATTTGAACCTTAGTCGTGTT+CGG | + | chr2_1:25870217-25870236 | Msa0202920:intron | 35.0% | |
GACATTAACTATCTCAAGCA+AGG | - | chr2_1:25870409-25870428 | None:intergenic | 35.0% | |
GTTTGACAAGGTCGAAAAAT+AGG | + | chr2_1:25870473-25870492 | Msa0202920:intron | 35.0% | |
! | ACTAATTTAGAGTTCAGTCG+AGG | + | chr2_1:25870575-25870594 | Msa0202920:intron | 35.0% |
GTCGAGGTATAAGTAAAATC+AGG | + | chr2_1:25870591-25870610 | Msa0202920:intron | 35.0% | |
GTTTAGCTAGGAACAAAACT+TGG | + | chr2_1:25870624-25870643 | Msa0202920:intron | 35.0% | |
CAGATAAAGTCAAATCACTC+TGG | - | chr2_1:25870656-25870675 | None:intergenic | 35.0% | |
TTGATGTAGCAACAACTAAG+TGG | - | chr2_1:25870709-25870728 | None:intergenic | 35.0% | |
TAGTTGTTGCTACATCAAGT+TGG | + | chr2_1:25870711-25870730 | Msa0202920:intron | 35.0% | |
GTCACATTTGGCGATAAATT+TGG | - | chr2_1:25870835-25870854 | None:intergenic | 35.0% | |
!! | ATCAAAGGATTTGCTGCTAA+TGG | + | chr2_1:25871100-25871119 | Msa0202920:three_prime_UTR | 35.0% |
TGCTAATGGCTTACAAAATG+TGG | + | chr2_1:25871114-25871133 | Msa0202920:three_prime_UTR | 35.0% | |
TAATGGCTTACAAAATGTGG+AGG | + | chr2_1:25871117-25871136 | Msa0202920:three_prime_UTR | 35.0% | |
!! | TAATTGCTTCACTGATTCAC+TGG | - | chr2_1:25871315-25871334 | None:intergenic | 35.0% |
TTTGTTTAGTGGAAGAGGAG+AGG | - | chr2_1:25862698-25862717 | None:intergenic | 40.0% | |
AAGTACCATGTGCTTGACAT+TGG | - | chr2_1:25862780-25862799 | None:intergenic | 40.0% | |
AAATGTGAAAATCGAGGGAC+AGG | - | chr2_1:25863021-25863040 | None:intergenic | 40.0% | |
TAGTAATAATGTGGAGGGTG+TGG | - | chr2_1:25863050-25863069 | None:intergenic | 40.0% | |
GAAACGACAAAAAATGGAGG+TGG | - | chr2_1:25863076-25863095 | None:intergenic | 40.0% | |
GAGATGGAAGCTAGGTTAAA+GGG | + | chr2_1:25863372-25863391 | Msa0202920:CDS | 40.0% | |
AGATGGAAGCTAGGTTAAAG+GGG | + | chr2_1:25863373-25863392 | Msa0202920:CDS | 40.0% | |
AGGTTAAAGGGGATATCAAG+TGG | + | chr2_1:25863384-25863403 | Msa0202920:CDS | 40.0% | |
! | ACTTTTGTGTCTCTTCCAAG+AGG | + | chr2_1:25863525-25863544 | Msa0202920:CDS | 40.0% |
! | CCTTTGGATTCTTTGAGGAA+AGG | - | chr2_1:25863647-25863666 | None:intergenic | 40.0% |
CCTTTCCTCAAAGAATCCAA+AGG | + | chr2_1:25863644-25863663 | Msa0202920:intron | 40.0% | |
TCTCTGACCTAGTCGATATT+TGG | - | chr2_1:25863740-25863759 | None:intergenic | 40.0% | |
GGTCAAATTTGGACTTGGAT+TGG | + | chr2_1:25865657-25865676 | Msa0202920:intron | 40.0% | |
CACATTTGTCCTATCACTCA+TGG | - | chr2_1:25865785-25865804 | None:intergenic | 40.0% | |
!!! | CTGGTTTTGGTATGAAATGG+TGG | - | chr2_1:25866360-25866379 | None:intergenic | 40.0% |
!!! | AGAAGTGTGAATGCTGGTTT+TGG | - | chr2_1:25866373-25866392 | None:intergenic | 40.0% |
! | CAAGTCCTAAAAGGGTTTTG+TGG | + | chr2_1:25866407-25866426 | Msa0202920:CDS | 40.0% |
!! | AGTCCTAAAAGGGTTTTGTG+GGG | + | chr2_1:25866409-25866428 | Msa0202920:CDS | 40.0% |
AACAAAGGTGAAGAGGAGAT+GGG | - | chr2_1:25866435-25866454 | None:intergenic | 40.0% | |
AAACAAAGGTGAAGAGGAGA+TGG | - | chr2_1:25866436-25866455 | None:intergenic | 40.0% | |
CGTGGTGAAACTTCAAACAA+AGG | - | chr2_1:25866450-25866469 | None:intergenic | 40.0% | |
! | TCTGGCTCCAAAGTAATTTG+TGG | + | chr2_1:25866516-25866535 | Msa0202920:intron | 40.0% |
! | CTGGCTCCAAAGTAATTTGT+GGG | + | chr2_1:25866517-25866536 | Msa0202920:intron | 40.0% |
! | TGGCTCCAAAGTAATTTGTG+GGG | + | chr2_1:25866518-25866537 | Msa0202920:intron | 40.0% |
GTTCCTAACACAGTTAACCT+TGG | - | chr2_1:25866544-25866563 | None:intergenic | 40.0% | |
GATGACAAAGTCACACAATC+CGG | - | chr2_1:25866632-25866651 | None:intergenic | 40.0% | |
AGACAAAATGTGAACCTAGG+TGG | + | chr2_1:25866733-25866752 | Msa0202920:intron | 40.0% | |
GACAAAATGTGAACCTAGGT+GGG | + | chr2_1:25866734-25866753 | Msa0202920:intron | 40.0% | |
!!! | GACACTCATTTTGAAACGGA+GGG | - | chr2_1:25866865-25866884 | None:intergenic | 40.0% |
!!! | CGACACTCATTTTGAAACAG+AGG | + | chr2_1:25867107-25867126 | Msa0202920:intron | 40.0% |
GTTGAGTGCTCTATCCAAAA+TGG | - | chr2_1:25867658-25867677 | None:intergenic | 40.0% | |
! | TCGTAAGATAAAAGCACGCA+TGG | + | chr2_1:25867912-25867931 | Msa0202920:intron | 40.0% |
CGCATGGCATTTGTGTATAT+TGG | + | chr2_1:25867928-25867947 | Msa0202920:intron | 40.0% | |
AATCCCTACCATTATGTTGC+TGG | + | chr2_1:25867974-25867993 | Msa0202920:intron | 40.0% | |
! | ATAGTGTGGTCTTAGGCTAT+TGG | + | chr2_1:25868070-25868089 | Msa0202920:intron | 40.0% |
TGGCATTGTATTAGCAATGG+TGG | - | chr2_1:25868585-25868604 | None:intergenic | 40.0% | |
CATCATAAAACAAAACGGGG+TGG | + | chr2_1:25868754-25868773 | Msa0202920:intron | 40.0% | |
ACAAATGGCAAGCTCAAAGA+TGG | + | chr2_1:25868916-25868935 | Msa0202920:CDS | 40.0% | |
GACGAGGTAAATTCTCACTT+TGG | + | chr2_1:25869032-25869051 | Msa0202920:intron | 40.0% | |
ATTTGATCGGTGGTTCATAG+TGG | - | chr2_1:25869513-25869532 | None:intergenic | 40.0% | |
TTTATTCCGACCAACAGGAA+TGG | + | chr2_1:25869729-25869748 | Msa0202920:CDS | 40.0% | |
TTATTCCGACCAACAGGAAT+GGG | + | chr2_1:25869730-25869749 | Msa0202920:CDS | 40.0% | |
! | GTGTTGATCATAGGAATCTG+AGG | - | chr2_1:25869770-25869789 | None:intergenic | 40.0% |
!! | CTGCATTGAGTGTTGATCAT+AGG | - | chr2_1:25869779-25869798 | None:intergenic | 40.0% |
GCACTAATGGTTGAAACCTT+TGG | - | chr2_1:25869844-25869863 | None:intergenic | 40.0% | |
CAGACCATGATTGTTTGACA+AGG | + | chr2_1:25870461-25870480 | Msa0202920:intron | 40.0% | |
TCGACCTTGTCAAACAATCA+TGG | - | chr2_1:25870468-25870487 | None:intergenic | 40.0% | |
!! | GGTCAATGACTAGTTTAGCT+AGG | + | chr2_1:25870612-25870631 | Msa0202920:intron | 40.0% |
GCAGTAACTTTGGCAAAATC+AGG | - | chr2_1:25870785-25870804 | None:intergenic | 40.0% | |
TACACGCACACATAAAGCAA+CGG | - | chr2_1:25870879-25870898 | None:intergenic | 40.0% | |
! | CAAGTATTGTGCATGTACTC+TGG | - | chr2_1:25871069-25871088 | None:intergenic | 40.0% |
CGACGTGATTAGATACCAAA+TGG | + | chr2_1:25871173-25871192 | Msa0202920:three_prime_UTR | 40.0% | |
!! | GAGGAGAGGAATGGATTATG+TGG | - | chr2_1:25862684-25862703 | None:intergenic | 45.0% |
TTAGTGGAAGAGGAGAGGAA+TGG | - | chr2_1:25862693-25862712 | None:intergenic | 45.0% | |
GAGGAAGAGAGAACAATGGA+AGG | - | chr2_1:25862750-25862769 | None:intergenic | 45.0% | |
ATCGAGGGACAGGTATTTGT+AGG | - | chr2_1:25863011-25863030 | None:intergenic | 45.0% | |
! | GACATGGCATTGAAAGCTTC+AGG | + | chr2_1:25863237-25863256 | Msa0202920:CDS | 45.0% |
CGAGTCAGAAACTTCTGACT+CGG | - | chr2_1:25863319-25863338 | None:intergenic | 45.0% | |
CGAGTCAGAAGTTTCTGACT+CGG | + | chr2_1:25863317-25863336 | Msa0202920:CDS | 45.0% | |
GGAGATGGAAGCTAGGTTAA+AGG | + | chr2_1:25863371-25863390 | Msa0202920:CDS | 45.0% | |
AAGGGGATATCAAGTGGAGA+AGG | + | chr2_1:25863390-25863409 | Msa0202920:CDS | 45.0% | |
AGGGGATATCAAGTGGAGAA+GGG | + | chr2_1:25863391-25863410 | Msa0202920:CDS | 45.0% | |
TTTGTGTCTCTTCCAAGAGG+TGG | + | chr2_1:25863528-25863547 | Msa0202920:CDS | 45.0% | |
TTGAGATCGTTACCACCTCT+TGG | - | chr2_1:25863543-25863562 | None:intergenic | 45.0% | |
GTAACGATCTCAAGCGGATA+CGG | + | chr2_1:25863550-25863569 | Msa0202920:CDS | 45.0% | |
!!! | GATGTCCTTTTGAGATTGGC+AGG | + | chr2_1:25863800-25863819 | Msa0202920:intron | 45.0% |
CAACACCTGCCAATCTCAAA+AGG | - | chr2_1:25863808-25863827 | None:intergenic | 45.0% | |
!! | AGATTGGCAGGTGTTGTTAG+AGG | + | chr2_1:25863812-25863831 | Msa0202920:intron | 45.0% |
AGTCGTACTAGTGCAATGCT+AGG | + | chr2_1:25865368-25865387 | Msa0202920:intron | 45.0% | |
! | ATTTGGACTTGGATTGGGGT+AGG | + | chr2_1:25865663-25865682 | Msa0202920:intron | 45.0% |
! | TTTGGACTTGGATTGGGGTA+GGG | + | chr2_1:25865664-25865683 | Msa0202920:intron | 45.0% |
!! | GATTGCTTTTAGCAAAGGCG+TGG | - | chr2_1:25866468-25866487 | None:intergenic | 45.0% |
CTTGGCCCCACAAATTACTT+TGG | - | chr2_1:25866526-25866545 | None:intergenic | 45.0% | |
! | CAAAGTAATTTGTGGGGCCA+AGG | + | chr2_1:25866524-25866543 | Msa0202920:intron | 45.0% |
! | ATTGGGTCATGTCGTTTGGT+CGG | + | chr2_1:25866570-25866589 | Msa0202920:intron | 45.0% |
TGTGAACCTAGGTGGGTAAT+AGG | + | chr2_1:25866741-25866760 | Msa0202920:intron | 45.0% | |
GTGAACCTAGGTGGGTAATA+GGG | + | chr2_1:25866742-25866761 | Msa0202920:intron | 45.0% | |
!!! | CGACACTCATTTTGAAACGG+AGG | - | chr2_1:25866866-25866885 | None:intergenic | 45.0% |
GCACCACAAGTCATCATGTA+GGG | - | chr2_1:25867954-25867973 | None:intergenic | 45.0% | |
TGCACCACAAGTCATCATGT+AGG | - | chr2_1:25867955-25867974 | None:intergenic | 45.0% | |
CCACCAGCAACATAATGGTA+GGG | - | chr2_1:25867980-25867999 | None:intergenic | 45.0% | |
CCTACCATTATGTTGCTGGT+GGG | + | chr2_1:25867978-25867997 | Msa0202920:intron | 45.0% | |
ATGTGGACAACTACTGCTCA+TGG | + | chr2_1:25868557-25868576 | Msa0202920:intron | 45.0% | |
AATGGCAAGCTCAAAGATGG+TGG | + | chr2_1:25868919-25868938 | Msa0202920:CDS | 45.0% | |
ATGGCAAGCTCAAAGATGGT+GGG | + | chr2_1:25868920-25868939 | Msa0202920:CDS | 45.0% | |
GTGGGCAGAGAACTATGATA+AGG | + | chr2_1:25868938-25868957 | Msa0202920:CDS | 45.0% | |
GGTATGCAGATGCATAGGTA+CGG | + | chr2_1:25869061-25869080 | Msa0202920:intron | 45.0% | |
ATTGCGTGATAGTTGCTCCT+TGG | - | chr2_1:25869710-25869729 | None:intergenic | 45.0% | |
CGCAATTTATTCCGACCAAC+AGG | + | chr2_1:25869724-25869743 | Msa0202920:CDS | 45.0% | |
TGGTATGAACTCAACCCCAA+AGG | + | chr2_1:25869825-25869844 | Msa0202920:CDS | 45.0% | |
ATCTGTCTTAGCGGCACTAA+TGG | - | chr2_1:25869857-25869876 | None:intergenic | 45.0% | |
TAGCGATCCGGATAGTGAAT+GGG | + | chr2_1:25869957-25869976 | Msa0202920:CDS | 45.0% | |
TCCTCAACCCATTCACTATC+CGG | - | chr2_1:25869967-25869986 | None:intergenic | 45.0% | |
ATTACCATCAGGTCTATGCC+AGG | + | chr2_1:25870006-25870025 | Msa0202920:CDS | 45.0% | |
AAAGGGAGATCAGAAGAGTC+AGG | + | chr2_1:25870034-25870053 | Msa0202920:CDS | 45.0% | |
AGATCAGAAGAGTCAGGTTC+AGG | + | chr2_1:25870040-25870059 | Msa0202920:CDS | 45.0% | |
ACAAAGTCCGAACACGACTA+AGG | - | chr2_1:25870227-25870246 | None:intergenic | 45.0% | |
!!! | GTGGTTGTTTTCAAGTCACG+TGG | - | chr2_1:25870690-25870709 | None:intergenic | 45.0% |
TGTAGCAGCAGAATGAGCAA+CGG | - | chr2_1:25870919-25870938 | None:intergenic | 45.0% | |
AGATGCATGCTAGACTATGG+TGG | + | chr2_1:25871030-25871049 | Msa0202920:CDS | 45.0% | |
GATGCATGCTAGACTATGGT+GGG | + | chr2_1:25871031-25871050 | Msa0202920:CDS | 45.0% | |
TGGCTTACAAAATGTGGAGG+TGG | + | chr2_1:25871120-25871139 | Msa0202920:three_prime_UTR | 45.0% | |
TCATATCATCTTCATGCGCG+CGG | + | chr2_1:25871225-25871244 | Msa0202920:three_prime_UTR | 45.0% | |
!! | ATATAATTATATAAGTAATA+AGG | - | chr2_1:25865708-25865727 | None:intergenic | 5.0% |
!! | AAAAATAATTAAATATAGAA+AGG | - | chr2_1:25867704-25867723 | None:intergenic | 5.0% |
!! | AATTTATATATCATAAATTT+GGG | - | chr2_1:25867807-25867826 | None:intergenic | 5.0% |
!! | AAATTTATATATCATAAATT+TGG | - | chr2_1:25867808-25867827 | None:intergenic | 5.0% |
GGTGGAGGAAGAGAGAACAA+TGG | - | chr2_1:25862754-25862773 | None:intergenic | 50.0% | |
TGTGCTTGACATTGGAGTGG+TGG | - | chr2_1:25862772-25862791 | None:intergenic | 50.0% | |
CCATGTGCTTGACATTGGAG+TGG | - | chr2_1:25862775-25862794 | None:intergenic | 50.0% | |
CCACTCCAATGTCAAGCACA+TGG | + | chr2_1:25862772-25862791 | Msa0202920:five_prime_UTR | 50.0% | |
AGCAGTGAGTGACTTCGGTT+AGG | - | chr2_1:25862978-25862997 | None:intergenic | 50.0% | |
TGCGTAGCAGTGAGTGACTT+CGG | - | chr2_1:25862983-25863002 | None:intergenic | 50.0% | |
GAGGGACAGGTATTTGTAGG+CGG | - | chr2_1:25863008-25863027 | None:intergenic | 50.0% | |
!! | CTGACTCGGAGAAGTTTCGA+AGG | + | chr2_1:25863331-25863350 | Msa0202920:CDS | 50.0% |
AGTTTCGAAGGACGAGGACT+TGG | + | chr2_1:25863343-25863362 | Msa0202920:CDS | 50.0% | |
GTTTCGAAGGACGAGGACTT+GGG | + | chr2_1:25863344-25863363 | Msa0202920:CDS | 50.0% | |
TTTCGAAGGACGAGGACTTG+GGG | + | chr2_1:25863345-25863364 | Msa0202920:CDS | 50.0% | |
CCAAACGACGAAGACGAACT+CGG | - | chr2_1:25863420-25863439 | None:intergenic | 50.0% | |
AGTTCGTCTTCGTCGTTTGG+TGG | + | chr2_1:25863420-25863439 | Msa0202920:CDS | 50.0% | |
! | GAGGTGGTAACGATCTCAAG+CGG | + | chr2_1:25863544-25863563 | Msa0202920:CDS | 50.0% |
ATCTCAAGCGGATACGGTTC+AGG | + | chr2_1:25863556-25863575 | Msa0202920:CDS | 50.0% | |
! | TGGATTGGGGTAGGGATTTG+AGG | + | chr2_1:25865672-25865691 | Msa0202920:intron | 50.0% |
! | GGGGTAAGAAGTGTGAATGC+TGG | - | chr2_1:25866379-25866398 | None:intergenic | 50.0% |
GGGCCAAGGTTAACTGTGTT+AGG | + | chr2_1:25866538-25866557 | Msa0202920:intron | 50.0% | |
! | TTGGGTCATGTCGTTTGGTC+GGG | + | chr2_1:25866571-25866590 | Msa0202920:intron | 50.0% |
TAGGTCCCTATTACCCACCT+AGG | - | chr2_1:25866750-25866769 | None:intergenic | 50.0% | |
TGGCCCTACATGATGACTTG+TGG | + | chr2_1:25867948-25867967 | Msa0202920:intron | 50.0% | |
CCCTACCATTATGTTGCTGG+TGG | + | chr2_1:25867977-25867996 | Msa0202920:intron | 50.0% | |
CCCACCAGCAACATAATGGT+AGG | - | chr2_1:25867981-25868000 | None:intergenic | 50.0% | |
ACCATTATGTTGCTGGTGGG+TGG | + | chr2_1:25867981-25868000 | Msa0202920:intron | 50.0% | |
! | CCATTATGTTGCTGGTGGGT+GGG | + | chr2_1:25867982-25868001 | Msa0202920:intron | 50.0% |
TGTGGTTGCAGTCACAACTG+CGG | + | chr2_1:25868502-25868521 | Msa0202920:intron | 50.0% | |
ATCTTGCTGGAGTTGGAAGC+GGG | - | chr2_1:25869007-25869026 | None:intergenic | 50.0% | |
GATCTTGCTGGAGTTGGAAG+CGG | - | chr2_1:25869008-25869027 | None:intergenic | 50.0% | |
GCTTCCAACTCCAGCAAGAT+CGG | + | chr2_1:25869007-25869026 | Msa0202920:CDS | 50.0% | |
TCTTCCGATCTTGCTGGAGT+TGG | - | chr2_1:25869014-25869033 | None:intergenic | 50.0% | |
ATGCAGATGCATAGGTACGG+TGG | + | chr2_1:25869064-25869083 | Msa0202920:intron | 50.0% | |
! | TCTCACTTGTTAGGGCGAGT+AGG | + | chr2_1:25869418-25869437 | Msa0202920:intron | 50.0% |
! | CTCACTTGTTAGGGCGAGTA+GGG | + | chr2_1:25869419-25869438 | Msa0202920:intron | 50.0% |
GATAGTTGCTCCTTGGTCAG+TGG | - | chr2_1:25869703-25869722 | None:intergenic | 50.0% | |
CCATTCCCATTCCTGTTGGT+CGG | - | chr2_1:25869738-25869757 | None:intergenic | 50.0% | |
CGACCAACAGGAATGGGAAT+GGG | + | chr2_1:25869736-25869755 | Msa0202920:CDS | 50.0% | |
GACCAACAGGAATGGGAATG+GGG | + | chr2_1:25869737-25869756 | Msa0202920:CDS | 50.0% | |
TACCCCATTCCCATTCCTGT+TGG | - | chr2_1:25869742-25869761 | None:intergenic | 50.0% | |
TCTAGAGAAGCTGATCGCTC+TGG | + | chr2_1:25869913-25869932 | Msa0202920:CDS | 50.0% | |
GATGAGCAATGCTAGCGATC+CGG | + | chr2_1:25869945-25869964 | Msa0202920:CDS | 50.0% | |
CTAGCGATCCGGATAGTGAA+TGG | + | chr2_1:25869956-25869975 | Msa0202920:CDS | 50.0% | |
!! | TCCGGATAGTGAATGGGTTG+AGG | + | chr2_1:25869963-25869982 | Msa0202920:CDS | 50.0% |
! | TGGGTTGAGGAAGATGAACC+TGG | + | chr2_1:25869976-25869995 | Msa0202920:CDS | 50.0% |
GGGAGATGCATGCTAGACTA+TGG | + | chr2_1:25871027-25871046 | Msa0202920:CDS | 50.0% | |
GAGGTGCAAGTAGCACCATT+TGG | - | chr2_1:25871191-25871210 | None:intergenic | 50.0% | |
GCTTGACATTGGAGTGGTGG+AGG | - | chr2_1:25862769-25862788 | None:intergenic | 55.0% | |
CGGAGAAGTTTCGAAGGACG+AGG | + | chr2_1:25863337-25863356 | Msa0202920:CDS | 55.0% | |
TTCGAAGGACGAGGACTTGG+GGG | + | chr2_1:25863346-25863365 | Msa0202920:CDS | 55.0% | |
CCGAGTTCGTCTTCGTCGTT+TGG | + | chr2_1:25863417-25863436 | Msa0202920:CDS | 55.0% | |
! | TCGTCTTCGTCGTTTGGTGG+AGG | + | chr2_1:25863423-25863442 | Msa0202920:CDS | 55.0% |
! | TCGTCGTTTGGTGGAGGAAG+TGG | + | chr2_1:25863429-25863448 | Msa0202920:CDS | 55.0% |
! | CGTCGTTTGGTGGAGGAAGT+GGG | + | chr2_1:25863430-25863449 | Msa0202920:CDS | 55.0% |
CGGATACGGTTCAGGTACGT+CGG | + | chr2_1:25863564-25863583 | Msa0202920:intron | 55.0% | |
!! | GGTTCAGGTACGTCGGTTTC+TGG | + | chr2_1:25863571-25863590 | Msa0202920:intron | 55.0% |
! | GGGCCCCACAAAACCCTTTT+AGG | - | chr2_1:25866415-25866434 | None:intergenic | 55.0% |
! | TGGGTCATGTCGTTTGGTCG+GGG | + | chr2_1:25866572-25866591 | Msa0202920:intron | 55.0% |
CCCACCCACCAGCAACATAA+TGG | - | chr2_1:25867985-25868004 | None:intergenic | 55.0% | |
TCCAGCAAGATCGGAAGACG+AGG | + | chr2_1:25869016-25869035 | Msa0202920:CDS | 55.0% | |
ACCTCGTCTTCCGATCTTGC+TGG | - | chr2_1:25869020-25869039 | None:intergenic | 55.0% | |
!! | TGGTCAGTGGTGGTGTCACT+GGG | - | chr2_1:25869690-25869709 | None:intergenic | 55.0% |
!! | TTGGTCAGTGGTGGTGTCAC+TGG | - | chr2_1:25869691-25869710 | None:intergenic | 55.0% |
AGTGACACCACCACTGACCA+AGG | + | chr2_1:25869690-25869709 | Msa0202920:CDS | 55.0% | |
AGTTGCTCCTTGGTCAGTGG+TGG | - | chr2_1:25869700-25869719 | None:intergenic | 55.0% | |
CCGACCAACAGGAATGGGAA+TGG | + | chr2_1:25869735-25869754 | Msa0202920:CDS | 55.0% | |
ACCATCAGGTCTATGCCAGG+CGG | + | chr2_1:25870009-25870028 | Msa0202920:CDS | 55.0% | |
GTCTATGCCAGGCGGCAAAA+GGG | + | chr2_1:25870017-25870036 | Msa0202920:CDS | 55.0% | |
CGTGTGATTGTGTCAGCGCA+TGG | + | chr2_1:25870310-25870329 | Msa0202920:intron | 55.0% | |
!! | AGGCGGGTTGCAGGAGTACA+CGG | - | chr2_1:25863282-25863301 | None:intergenic | 60.0% |
!! | CTGACTCGGAGCCACCGTTT+CGG | - | chr2_1:25863305-25863324 | None:intergenic | 60.0% |
AAGGACGAGGACTTGGGGGA+AGG | + | chr2_1:25863350-25863369 | Msa0202920:CDS | 60.0% | |
GAGGACTTGGGGGAAGGAGA+TGG | + | chr2_1:25863356-25863375 | Msa0202920:CDS | 60.0% | |
GGGGGAAGGAGATGGAAGCT+AGG | + | chr2_1:25863364-25863383 | Msa0202920:CDS | 60.0% | |
! | CGTTTGGTGGAGGAAGTGGG+AGG | + | chr2_1:25863433-25863452 | Msa0202920:CDS | 60.0% |
TGGAGGAAGTGGGAGGAGAG+TGG | + | chr2_1:25863440-25863459 | Msa0202920:CDS | 60.0% | |
AGGAAGTGGGAGGAGAGTGG+TGG | + | chr2_1:25863443-25863462 | Msa0202920:CDS | 60.0% | |
! | GAGGAGAGTGGTGGTGCTTG+AGG | + | chr2_1:25863452-25863471 | Msa0202920:CDS | 60.0% |
! | GAGAGTGGTGGTGCTTGAGG+AGG | + | chr2_1:25863455-25863474 | Msa0202920:CDS | 60.0% |
! | AGTGGTGGTGCTTGAGGAGG+AGG | + | chr2_1:25863458-25863477 | Msa0202920:CDS | 60.0% |
GTGGTGCTTGAGGAGGAGGA+GGG | + | chr2_1:25863462-25863481 | Msa0202920:CDS | 60.0% | |
CAAGGAGTGGGTGGCACAAG+TGG | + | chr2_1:25863485-25863504 | Msa0202920:CDS | 60.0% | |
! | GGGTCATGTCGTTTGGTCGG+GGG | + | chr2_1:25866573-25866592 | Msa0202920:intron | 60.0% |
TTGGAAGCGGGAAGGCTTGG+CGG | - | chr2_1:25868995-25869014 | None:intergenic | 60.0% | |
GAGTTGGAAGCGGGAAGGCT+TGG | - | chr2_1:25868998-25869017 | None:intergenic | 60.0% | |
TGCTGGAGTTGGAAGCGGGA+AGG | - | chr2_1:25869003-25869022 | None:intergenic | 60.0% | |
GGTCTATGCCAGGCGGCAAA+AGG | + | chr2_1:25870016-25870035 | Msa0202920:CDS | 60.0% | |
! | CTGATCTCCCTTTTGCCGCC+TGG | - | chr2_1:25870027-25870046 | None:intergenic | 60.0% |
CCTGCAACCCGCCTCCGAAA+CGG | + | chr2_1:25863288-25863307 | Msa0202920:CDS | 65.0% | |
ACTCGGAGCCACCGTTTCGG+AGG | - | chr2_1:25863302-25863321 | None:intergenic | 65.0% | |
GGTGGTGCTTGAGGAGGAGG+AGG | + | chr2_1:25863461-25863480 | Msa0202920:CDS | 65.0% | |
GCTTGAGGAGGAGGAGGGCA+AGG | + | chr2_1:25863467-25863486 | Msa0202920:CDS | 65.0% | |
AGGAGGAGGAGGGCAAGGAG+TGG | + | chr2_1:25863472-25863491 | Msa0202920:CDS | 65.0% | |
GGAGGAGGAGGGCAAGGAGT+GGG | + | chr2_1:25863473-25863492 | Msa0202920:CDS | 65.0% | |
TGGGTGGCACAAGTGGAGCC+TGG | + | chr2_1:25863492-25863511 | Msa0202920:CDS | 65.0% | |
GCCGCCTGGCATAGACCTGA+TGG | - | chr2_1:25870013-25870032 | None:intergenic | 65.0% | |
!! | CCGTTTCGGAGGCGGGTTGC+AGG | - | chr2_1:25863291-25863310 | None:intergenic | 70.0% |
GCAACCCGCCTCCGAAACGG+TGG | + | chr2_1:25863291-25863310 | Msa0202920:CDS | 70.0% | |
GGAGCCACCGTTTCGGAGGC+GGG | - | chr2_1:25863298-25863317 | None:intergenic | 70.0% | |
CGGAGCCACCGTTTCGGAGG+CGG | - | chr2_1:25863299-25863318 | None:intergenic | 70.0% | |
GGAGGAGGGCAAGGAGTGGG+TGG | + | chr2_1:25863476-25863495 | Msa0202920:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 25862667 | 25871516 | 25862667 | ID=Msa0202920;Name=Msa0202920 |
chr2_1 | mRNA | 25862667 | 25871516 | 25862667 | ID=Msa0202920-mRNA-1;Parent=Msa0202920;Name=Msa0202920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=308|0.6|0.83|0.83|0.8|0.66|6|425|412 |
chr2_1 | exon | 25862667 | 25862793 | 25862667 | ID=Msa0202920-mRNA-1:exon:9789;Parent=Msa0202920-mRNA-1 |
chr2_1 | exon | 25862960 | 25863577 | 25862960 | ID=Msa0202920-mRNA-1:exon:9790;Parent=Msa0202920-mRNA-1 |
chr2_1 | exon | 25866345 | 25866527 | 25866345 | ID=Msa0202920-mRNA-1:exon:9791;Parent=Msa0202920-mRNA-1 |
chr2_1 | exon | 25868902 | 25869037 | 25868902 | ID=Msa0202920-mRNA-1:exon:9792;Parent=Msa0202920-mRNA-1 |
chr2_1 | exon | 25869658 | 25870061 | 25869658 | ID=Msa0202920-mRNA-1:exon:9793;Parent=Msa0202920-mRNA-1 |
chr2_1 | exon | 25871013 | 25871516 | 25871013 | ID=Msa0202920-mRNA-1:exon:9794;Parent=Msa0202920-mRNA-1 |
chr2_1 | five_prime_UTR | 25862667 | 25862793 | 25862667 | ID=Msa0202920-mRNA-1:five_prime_utr;Parent=Msa0202920-mRNA-1 |
chr2_1 | five_prime_UTR | 25862960 | 25863140 | 25862960 | ID=Msa0202920-mRNA-1:five_prime_utr;Parent=Msa0202920-mRNA-1 |
chr2_1 | CDS | 25863141 | 25863577 | 25863141 | ID=Msa0202920-mRNA-1:cds;Parent=Msa0202920-mRNA-1 |
chr2_1 | CDS | 25866345 | 25866527 | 25866345 | ID=Msa0202920-mRNA-1:cds;Parent=Msa0202920-mRNA-1 |
chr2_1 | CDS | 25868902 | 25869037 | 25868902 | ID=Msa0202920-mRNA-1:cds;Parent=Msa0202920-mRNA-1 |
chr2_1 | CDS | 25869658 | 25870061 | 25869658 | ID=Msa0202920-mRNA-1:cds;Parent=Msa0202920-mRNA-1 |
chr2_1 | CDS | 25871013 | 25871091 | 25871013 | ID=Msa0202920-mRNA-1:cds;Parent=Msa0202920-mRNA-1 |
chr2_1 | three_prime_UTR | 25871092 | 25871516 | 25871092 | ID=Msa0202920-mRNA-1:three_prime_utr;Parent=Msa0202920-mRNA-1 |
Gene Sequence |
Protein sequence |