AlfalfaGEDB | Msa0597270

M. sativa cultivar zhongmu-4 / Msa0597270

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597270	XP_013455390.1	95.857	1038	43	0	1	1038	1	1038	0.0	1963

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597270	sp\|Q9FII5\|TDR_ARATH	63.337	971	343	8	47	1010	49	1013	0.0	1222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0597270	0.838538	2.710273e-57	-8.615850e-47
Msa0002580	Msa0597270	0.849119	3.967797e-60	-8.615850e-47
Msa0003080	Msa0597270	0.838309	3.103783e-57	-8.615850e-47
Msa0005890	Msa0597270	0.824883	6.340316e-54	-8.615850e-47
Msa0008040	Msa0597270	0.819832	9.440040e-53	-8.615850e-47
Msa0015150	Msa0597270	0.814565	1.444298e-51	-8.615850e-47
Msa0017670	Msa0597270	0.855806	4.926443e-62	-8.615850e-47
Msa0017930	Msa0597270	0.812642	3.825624e-51	-8.615850e-47
Msa0019900	Msa0597270	0.854777	9.817574e-62	-8.615850e-47
Msa0025160	Msa0597270	0.872173	3.898793e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597270	MtrunA17_Chr4g0018701	95.857	1038	43	0	1	1038	1	1038	0.0	1963
Msa0597270	MtrunA17_Chr4g0018651	72.890	1007	245	11	1	1006	1	980	0.0	1418
Msa0597270	MtrunA17_Chr1g0183231	45.732	984	496	19	33	1003	26	984	0.0	828
Msa0597270	MtrunA17_Chr1g0190411	43.960	1010	540	14	1	1003	1	991	0.0	822
Msa0597270	MtrunA17_Chr7g0262141	44.347	1026	522	15	11	1018	15	1009	0.0	813
Msa0597270	MtrunA17_Chr4g0018801	79.957	469	90	1	1	469	1	465	0.0	715
Msa0597270	MtrunA17_Chr4g0018801	47.887	710	335	11	323	1006	79	779	0.0	572
Msa0597270	MtrunA17_Chr4g0018801	32.432	407	245	4	183	584	83	464	2.57e-46	179
Msa0597270	MtrunA17_Chr4g0018801	28.767	365	256	2	239	599	91	455	4.36e-39	157
Msa0597270	MtrunA17_Chr4g0018801	30.667	225	132	1	82	282	246	470	2.80e-20	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0597270	AT5G61480.1	63.337	971	343	8	47	1010	49	1013	1222
Msa0597270	AT4G28650.1	44.423	1013	522	20	1	1003	3	984	794
Msa0597270	AT1G08590.1	42.270	1022	552	17	3	1003	4	1008	759
Msa0597270	AT5G65700.1	42.111	976	511	20	36	995	28	965	707
Msa0597270	AT5G65700.2	42.111	976	511	20	36	995	28	965	707
Msa0597270	AT3G49670.1	41.411	978	515	21	33	995	27	961	694
Msa0597270	AT4G20270.1	41.790	1017	540	20	2	999	4	987	693
Msa0597270	AT1G75820.1	40.471	976	525	22	37	995	31	967	657
Msa0597270	AT1G28440.1	38.723	1002	508	19	37	996	23	960	625
Msa0597270	AT5G48940.1	37.010	1097	569	21	8	1018	24	1084	613

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Find 278 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCCGGAGGAAGGGAT+TGG	0.523514	4_2:+29245768	None:intergenic
AAAAGTAGTGGCAAAAGAAA+AGG	0.459121	4_2:-29247948	None:intergenic
AAACCGCCGGCGCAATCGTT+TGG	0.381084	4_2:-29245614	Msa0597270:CDS
AAACTGCACCTCACTCGTTA+GGG	0.501837	4_2:-29246312	Msa0597270:CDS
AAAGAATAAAGGGGACAATA+TGG	0.382517	4_2:-29245133	Msa0597270:CDS
AAAGCTTTGGTCAAAACAAA+AGG	0.474470	4_2:-29245328	Msa0597270:CDS
AAATCAAGGTAGGTTAAATT+AGG	0.277998	4_2:+29246233	None:intergenic
AAATTGGGTCTTGCTGGTTG+TGG	0.448160	4_2:+29247374	None:intergenic
AACAAAATCGGGAATTTGAC+CGG	0.471444	4_2:+29246058	None:intergenic
AACACAACATCTCTCATTGA+AGG	0.467290	4_2:+29243618	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTAAATTTAAGGGTAAGA+AGG	+	chr4_2:29243417-29243436	None:intergenic	30.0%
GTGATGAGAAAGAATAGAAA+AGG	+	chr4_2:29243492-29243511	None:intergenic	30.0%
AATCATTGAGATGGTTTAGA+GGG	+	chr4_2:29243623-29243642	None:intergenic	30.0%
TTAACTCACTTGAACATTAG+TGG	-	chr4_2:29243804-29243823	Msa0597270:CDS	30.0%
ATTAGTGGAAATGACTTCAA+TGG	-	chr4_2:29243819-29243838	Msa0597270:CDS	30.0%
CTCTTCAAGAATCATTTACA+TGG	-	chr4_2:29244323-29244342	Msa0597270:intron	30.0%
TTATCAGAAAATGAACTCAC+TGG	-	chr4_2:29244395-29244414	Msa0597270:intron	30.0%
CTCATGTATAACAAGCTAAA+TGG	-	chr4_2:29244467-29244486	Msa0597270:intron	30.0%
ATTCCTATCAACATTTGCAA+AGG	-	chr4_2:29244638-29244657	Msa0597270:intron	30.0%
TTTCCTTTGCAAATGTTGAT+AGG	+	chr4_2:29244644-29244663	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	29243102	29247959	29243102	ID=Msa0597270;Name=Msa0597270
chr4_2	mRNA	29243102	29247959	29243102	ID=Msa0597270-mRNA-1;Parent=Msa0597270;Name=Msa0597270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=381\|1\|1\|1\|1\|1\|2\|377\|1038
chr4_2	exon	29243102	29243915	29243102	ID=Msa0597270-mRNA-1:exon:7453;Parent=Msa0597270-mRNA-1
chr4_2	exon	29244899	29247959	29244899	ID=Msa0597270-mRNA-1:exon:7452;Parent=Msa0597270-mRNA-1
chr4_2	five_prime_UTR	29247579	29247959	29247579	ID=Msa0597270-mRNA-1:five_prime_utr;Parent=Msa0597270-mRNA-1
chr4_2	CDS	29244899	29247578	29244899	ID=Msa0597270-mRNA-1:cds;Parent=Msa0597270-mRNA-1
chr4_2	CDS	29243479	29243915	29243479	ID=Msa0597270-mRNA-1:cds;Parent=Msa0597270-mRNA-1
chr4_2	three_prime_UTR	29243102	29243478	29243102	ID=Msa0597270-mRNA-1:three_prime_utr;Parent=Msa0597270-mRNA-1

Gene Sequence

>Msa0597270

ATGAAACCTTTTCTATTCTTTCTCATCACATTCTTCTTCTTTTCCCAAACACAGTTACTGCCACTAGTTTCCTCTGCCACAACCACTATTCCCTTTCAACTCATAAGCCTCCTCTCAATAAAATCCTCCCTCATTGACCCTCTAAACCATCTCAATGATTGGAAAAATTACCCTTCTGATTCCCACAACCAGCAAGACCCAATTTGGTGTTCTTGGAGAGGAATCAATTGCCACCCAAAAACAGCTCAAATTACTTCCCTAAACCTCTCTAACCTCAACCTTTCAGGCATAATCTCGCCCAAAATCCGCTACTTAACGACGTTAACTCACTTGAACATTAGTGGAAATGACTTCAATGGAACTTTCCAAACAGCAATTTTTCAACTCACTGAGCTTAGAACTCTTGACATTAGCCATAATTCCTTCAACTCAACTTTCCCACCTGGAATTTCAAAGCTTAGATTCTTAAGAATCTTCGATGCTTATAGTAACAGTTTCACAGGCCCTCTCCCTGAAGAACTTATCAGGCTACCCTTTCTAGAACACCTTAACCTCGGTGGAAGCTACTTCAATGGCAAAATCCCTCCAAGCTATGGAAGTTTTAAAAGACTCAAATTTCTAGATTTAGCTGGTAATGCATTGGAAGGTTCACTACCACCTCAACTAGGCTTATTATCAGAGTTGCAACGCTTGGAAATCGGATACAACTCATACTCAGGAACAATACCAGTGGAATTAACAATGTTGTCTAATCTCAAGTACTTGGATATTGCAGGTGCCAACATTTCTGGTGAAGTGATTCCTGAACTAGGTAACTTATCCATGCTTGAAACACTGCTTCTCTTCAAGAATCATTTACATGGTGAAATCCCATCAAGCATAGGAAAGTTGAAATCATTGCAAGCTCTTGATTTATCAGAAAATGAACTCACTGGTTCGATTCCATCAGAAATAACAATGTTGAACGAGCTAGTAGATTTGAGGCTCATGTATAACAAGCTAAATGGTGAAATTCCACAAGAAATTGGTGACCTTCCAAAACTCAACACTTTCCTTATTTTCAACAACTCATTCACCGGTGCATTACCACCAAAACTTGGTTCCAACGGGTTACTACAATTACTCGATGTTTCCACAAACTCGCTCCAAGGTTCAATTCCTATCAACATTTGCAAAGGAAACAATCTTGTAAAGTTCAATCTCTTCAACAACAAATTCACCAATAGTCTTCCATCATCACTCATAAACTGCACCTCACTCGTTAGGGTTCGTATCCAAAACAACAATCTCAATGGGTCAATTCCACAAACACTTACAATGCTTCCTAATTTAACCTACCTTGATTTAAGCAACAACAATTTCAAAGGCGAAATTCCTCAAGAATTTGGAAACGTTCAATACCTCAACATCTCATGCAACTCTTTTGAAAGCGAACTACCAACCAGCATTTGGAATTCAAGTAATCTTCAAATTTTCTCAGCTTCATTTTCAAAAATCACCGGTCAAATTCCCGATTTTGTTGATTGCAAATCGATCTACAAGATCGAATTACAAGGAAATTCAATCACCGGCACAATTCCATGGAACATCGGTGATTGCGAAAAACTGCTTCAGTTAAACCTAAGCAAAAACAACCTCACCGGAATCATTCCTTACGAAATCTCAACTCTTCCTTCAATCACCGACGTTGATCTCTCGCAGAATTCACTCACCGGAACAATTCCTTCAAGCTTCAACAACTGCTCAACTCTCGAGAATTTCAACATCAGTTTCAATTCCCTCACCGGTCCAATCCCTTCCTCCGGCGTTTTTCAAAGCCTCCATCCTTCTTCCTACTCCGGCAACGAAAATCTCTGCGGTCGGTTTTTAGCCAAACCCTGCGCCGACGATGTACTCACCGCCGGCGAAAACGAACTCGAAGTTCACCGTCAACAACCGAAGAAAACCGCCGGCGCAATCGTTTGGATAATCGCCGCCGCGTTTGGTATCGGACTCTTCGTTCTCGTCGCCGGAACACGGTGTTTTCAAACAAACTATAACCGTCGATTTAACGGTAACGACGCTAACGGCGAAGTTGGACCGTGGAAGTTAACGGCGTTTCAAAGGTTAAATTTCACGGCGGAAGACGTTCTCGAATGCGTTTCAATGTCTGATAAAATCTTAGGAATGGGATCCACTGGAACTGTTTATAAAGCGGAACTGCCAGGTGGCGAAATCATAGCCGTCAAAAAGCTTTGGTCAAAACAAAAGGAGAATAGTAGTATAATCCGACGGAGGAGAGGGGTTTTAGCTGAAGTGGATGTATTAGGAAATGTGAGACACAGGAATATTGTGAGATTGTTAGGGTGTTGTAGTAACAAGGAAATTACCATGTTGCTATATGAGTATATGCCAAATGGTAACCTTGATGAGTTTTTGCATGCAAAGAATAAAGGGGACAATATGGTAATTGCGAGTGATTGGTTTACTAGGTATAAGATAGCTTTGGGTGTGGCACAGGGGATAAGTTATCTACACCATGATTGTGATCCGGTGATCGTGCATAGAGATCTTAAACCTAGTAATATTTTGTTGGATGGTGAGATGGAAGCTAGAGTGGCTGATTTCGGTGTTGCCAAGTTGATTCAAACCGATGAGTCTATGTCTGTTATTGCCGGTTCCTATGGTTACATTGCTCCGGAATATGCTTATACACTCCAAGTTGATGAGAAGAGTGACATATACAGCTATGGAGTAGTGTTAATGGAAATTTTAAGTGGAAAACGCTCTGTGGATCAAGAATTTGGTGATGGGAATAGCATTGTAGATTGGGTTAAATCCAAAATAAAGACCCAAGATGGAATTGAAGGTATATTGGACAAGAATGCAGGGGCAGGGTGTAATTCAGTGAGGGAAGAAATGAAACAAATGCTTAGAATTGCATTGCTTTGCACAAGTAGAAATCCAGCTGATAGACCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGCTGCTAAACCTAAAAGGAAATTGTTTGATAGTGTTGTTGTAAGTCATTGTGCTAGTGGTGACAATGTTGATGGTGGTGGAGGTGGTGATATTCCAATGGCTCAAAAGCCAATTACCAATGAAAGCTAG

Protein sequence

>Msa0597270

MKPFLFFLITFFFFSQTQLLPLVSSATTTIPFQLISLLSIKSSLIDPLNHLNDWKNYPSDSHNQQDPIWCSWRGINCHPKTAQITSLNLSNLNLSGIISPKIRYLTTLTHLNISGNDFNGTFQTAIFQLTELRTLDISHNSFNSTFPPGISKLRFLRIFDAYSNSFTGPLPEELIRLPFLEHLNLGGSYFNGKIPPSYGSFKRLKFLDLAGNALEGSLPPQLGLLSELQRLEIGYNSYSGTIPVELTMLSNLKYLDIAGANISGEVIPELGNLSMLETLLLFKNHLHGEIPSSIGKLKSLQALDLSENELTGSIPSEITMLNELVDLRLMYNKLNGEIPQEIGDLPKLNTFLIFNNSFTGALPPKLGSNGLLQLLDVSTNSLQGSIPINICKGNNLVKFNLFNNKFTNSLPSSLINCTSLVRVRIQNNNLNGSIPQTLTMLPNLTYLDLSNNNFKGEIPQEFGNVQYLNISCNSFESELPTSIWNSSNLQIFSASFSKITGQIPDFVDCKSIYKIELQGNSITGTIPWNIGDCEKLLQLNLSKNNLTGIIPYEISTLPSITDVDLSQNSLTGTIPSSFNNCSTLENFNISFNSLTGPIPSSGVFQSLHPSSYSGNENLCGRFLAKPCADDVLTAGENELEVHRQQPKKTAGAIVWIIAAAFGIGLFVLVAGTRCFQTNYNRRFNGNDANGEVGPWKLTAFQRLNFTAEDVLECVSMSDKILGMGSTGTVYKAELPGGEIIAVKKLWSKQKENSSIIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNKEITMLLYEYMPNGNLDEFLHAKNKGDNMVIASDWFTRYKIALGVAQGISYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDQEFGDGNSIVDWVKSKIKTQDGIEGILDKNAGAGCNSVREEMKQMLRIALLCTSRNPADRPSMRDVVLMLQAAKPKRKLFDSVVVSHCASGDNVDGGGGGDIPMAQKPITNES*