Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202970 | XP_013463513.1 | 93.009 | 658 | 15 | 1 | 1 | 658 | 1 | 627 | 0.0 | 1255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202970 | sp|Q9SKI4|RFA1A_ARATH | 67.023 | 655 | 200 | 4 | 1 | 654 | 1 | 640 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202970 | A0A072V862 | 93.009 | 658 | 15 | 1 | 1 | 658 | 1 | 627 | 0.0 | 1255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202970 | Msa0246010 | 0.899425 | 2.007842e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202970 | MtrunA17_Chr2g0300361 | 93.009 | 658 | 15 | 1 | 1 | 658 | 1 | 627 | 0.0 | 1255 |
| Msa0202970 | MtrunA17_Chr3g0096381 | 71.949 | 467 | 116 | 3 | 203 | 657 | 121 | 584 | 0.0 | 699 |
| Msa0202970 | MtrunA17_Chr3g0096381 | 61.157 | 121 | 47 | 0 | 1 | 121 | 1 | 121 | 1.63e-38 | 150 |
| Msa0202970 | MtrunA17_Chr5g0409381 | 50.975 | 718 | 287 | 15 | 1 | 658 | 1 | 713 | 0.0 | 656 |
| Msa0202970 | MtrunA17_Chr4g0061491 | 35.991 | 464 | 275 | 7 | 206 | 655 | 159 | 614 | 2.02e-92 | 298 |
| Msa0202970 | MtrunA17_Chr5g0409361 | 35.252 | 139 | 83 | 1 | 1 | 139 | 1 | 132 | 2.18e-19 | 90.1 |
| Msa0202970 | MtrunA17_Chr5g0409361 | 37.500 | 112 | 69 | 1 | 1 | 111 | 146 | 257 | 1.18e-14 | 75.9 |
| Msa0202970 | MtrunA17_Chr5g0409371 | 38.947 | 95 | 58 | 0 | 1 | 95 | 1 | 95 | 6.77e-15 | 70.9 |
| Msa0202970 | MtrunA17_Chr6g0469931 | 28.708 | 209 | 135 | 8 | 254 | 452 | 42 | 246 | 2.29e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202970 | AT2G06510.1 | 67.023 | 655 | 200 | 4 | 1 | 654 | 1 | 640 | 0.0 | 902 |
| Msa0202970 | AT2G06510.2 | 66.614 | 632 | 195 | 4 | 24 | 654 | 1 | 617 | 0.0 | 871 |
| Msa0202970 | AT4G19130.2 | 49.707 | 682 | 306 | 8 | 1 | 656 | 2 | 672 | 0.0 | 683 |
| Msa0202970 | AT4G19130.1 | 49.707 | 682 | 306 | 8 | 1 | 656 | 1 | 671 | 0.0 | 682 |
| Msa0202970 | AT5G45400.1 | 61.684 | 475 | 177 | 4 | 184 | 656 | 270 | 741 | 0.0 | 642 |
| Msa0202970 | AT5G45400.1 | 33.121 | 157 | 98 | 2 | 1 | 150 | 1 | 157 | 1.04e-18 | 91.3 |
| Msa0202970 | AT5G08020.1 | 37.931 | 464 | 265 | 8 | 206 | 654 | 144 | 599 | 6.59e-102 | 323 |
| Msa0202970 | AT5G61000.1 | 31.065 | 676 | 389 | 17 | 1 | 653 | 1 | 622 | 9.45e-96 | 308 |
| Msa0202970 | AT1G52950.1 | 22.273 | 440 | 293 | 14 | 215 | 629 | 10 | 425 | 1.22e-15 | 80.9 |
Find 191 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTATTATTAATATTTC+TGG | 0.129088 | 2_1:+25997669 | None:intergenic |
| ACCAGCCTTTACTGCTAAAA+TGG | 0.144775 | 2_1:+25996838 | None:intergenic |
| CAGAAATATTAATAATAATT+TGG | 0.171665 | 2_1:-25997668 | Msa0202970:CDS |
| TGCAGTAACCCTTGCCTTGA+TGG | 0.192465 | 2_1:+25997393 | None:intergenic |
| GGAAGCAGGGGAGGAGATTA+TGG | 0.234809 | 2_1:-25996351 | Msa0202970:CDS |
| GATTTCACAATCAGGTATTA+TGG | 0.235355 | 2_1:+25997771 | None:intergenic |
| ATGCTATCCTTGATGTTATT+GGG | 0.237693 | 2_1:-25997039 | Msa0202970:CDS |
| GTAGTAATGGGCAGAATTTC+AGG | 0.238903 | 2_1:-25997540 | Msa0202970:CDS |
| GTAGTAATGGGCAGAATTTC+AGG | 0.238903 | 2_1:-25997630 | Msa0202970:CDS |
| AATGCTATCCTTGATGTTAT+TGG | 0.260217 | 2_1:-25997040 | Msa0202970:CDS |
| TGCTTCTCTATCCATTTCTA+AGG | 0.285865 | 2_1:-25996693 | Msa0202970:CDS |
| AGCTGCTTTAAATCCCTATC+AGG | 0.291739 | 2_1:-25997425 | Msa0202970:CDS |
| TTCCTTGTACAGGATTATTA+TGG | 0.291986 | 2_1:-25997809 | Msa0202970:intron |
| TTGAATCTAAAGGACAATTC+TGG | 0.293961 | 2_1:-25996947 | Msa0202970:CDS |
| AACTTGGGTAACTGCTTTCC+AGG | 0.306558 | 2_1:-25996372 | Msa0202970:CDS |
| TAATCTCCTCCCCTGCTTCC+TGG | 0.309445 | 2_1:+25996354 | None:intergenic |
| GAGTGTTGAGCTAACACTTT+GGG | 0.310178 | 2_1:-25996921 | Msa0202970:CDS |
| GTCTGAGCCTCAGGGAAATC+TGG | 0.314113 | 2_1:+25996752 | None:intergenic |
| GTGTGTGGAGAAAGAAATTT+TGG | 0.321651 | 2_1:+26000243 | None:intergenic |
| GTTCTTAAGGTCTGAGCCTC+AGG | 0.330109 | 2_1:+25996743 | None:intergenic |
| TTGATCAAACCAGGTTCTTA+AGG | 0.331128 | 2_1:+25996730 | None:intergenic |
| GATGGCCCACCTACCCTGAT+AGG | 0.333085 | 2_1:+25997411 | None:intergenic |
| GCCCTCATTGTTATCCAGTC+TGG | 0.338147 | 2_1:+25996587 | None:intergenic |
| TCTCACCGCAAACGCTATTC+CGG | 0.338839 | 2_1:-26000189 | Msa0202970:CDS |
| CAGGAGGATGATGAGAAGTT+TGG | 0.346761 | 2_1:-25996290 | Msa0202970:CDS |
| CAATCACTGCCTACGGAACT+TGG | 0.351957 | 2_1:+25996112 | None:intergenic |
| CTCAACGACCGAGTCAATAC+TGG | 0.354429 | 2_1:-26000017 | Msa0202970:CDS |
| TCAGGCAATGCTTTCTGAAC+TGG | 0.362621 | 2_1:+25997712 | None:intergenic |
| GGTATAGAACCATCCTCATC+TGG | 0.367686 | 2_1:+25997115 | None:intergenic |
| CTCAAAATGCTGGTAGTAAT+GGG | 0.368189 | 2_1:-25997642 | Msa0202970:CDS |
| TCAATCATTTGAAGAATGAA+TGG | 0.372621 | 2_1:-25997177 | Msa0202970:CDS |
| TGCCCATTACTACCAGCATT+TGG | 0.378317 | 2_1:+25997550 | None:intergenic |
| GCTCAAATCCAGGATCATTC+AGG | 0.380015 | 2_1:-25996398 | Msa0202970:CDS |
| ACAGCTTGCCCTCTGATGAT+TGG | 0.387057 | 2_1:-25996527 | Msa0202970:CDS |
| GAACCAGCCACAGTGTTATC+AGG | 0.387320 | 2_1:+25997694 | None:intergenic |
| CAAATTAAAGATGAAGATCT+AGG | 0.387556 | 2_1:-25996623 | Msa0202970:CDS |
| GGGCAAGCTGTGTAACAAAA+TGG | 0.387851 | 2_1:+25996539 | None:intergenic |
| TTTGGGGTGAATTCTGCAAC+AGG | 0.396738 | 2_1:-25996904 | Msa0202970:CDS |
| GATGAAGATCTAGGGCGTTC+AGG | 0.398577 | 2_1:-25996614 | Msa0202970:CDS |
| GGTGAAGATTACAGTAGTTA+AGG | 0.400983 | 2_1:-25996186 | Msa0202970:CDS |
| ATGAGTGATGTCCTTAGAAA+TGG | 0.402311 | 2_1:+25996682 | None:intergenic |
| CTCCAAATGCTGGTAGTAAT+GGG | 0.405201 | 2_1:-25997552 | Msa0202970:CDS |
| CCAGCCTTTACTGCTAAAAT+GGG | 0.406397 | 2_1:+25996839 | None:intergenic |
| GAACCTGGTTTGATCAAGTT+GGG | 0.410401 | 2_1:-25996724 | Msa0202970:CDS |
| AGCGGAGGAGGTTGGTATTG+AGG | 0.411724 | 2_1:+25997595 | None:intergenic |
| ACCGCAACAACCACCACCAA+TGG | 0.413608 | 2_1:-26000219 | Msa0202970:exon |
| TCTGAATCCACAAATGACTT+TGG | 0.414308 | 2_1:+25997739 | None:intergenic |
| ATACCTGATTGTGAAATCAT+TGG | 0.415649 | 2_1:-25997766 | Msa0202970:CDS |
| CTTCAAGAGATGGTGGATGC+TGG | 0.419540 | 2_1:-25996869 | Msa0202970:CDS |
| AGAACCTGGTTTGATCAAGT+TGG | 0.422430 | 2_1:-25996725 | Msa0202970:CDS |
| CAATCATTTGAAGAATGAAT+GGG | 0.424161 | 2_1:-25997176 | Msa0202970:CDS |
| TTCCCAATGATTTCACAATC+AGG | 0.429166 | 2_1:+25997763 | None:intergenic |
| TGGGAATCCAAAGTCATTTG+TGG | 0.432048 | 2_1:-25997746 | Msa0202970:CDS |
| GGCGTTCAGGCAAGCCAGAC+TGG | 0.443599 | 2_1:-25996601 | Msa0202970:CDS |
| TCTTCAATGAGTTTGTGTTT+AGG | 0.444396 | 2_1:-25996247 | Msa0202970:CDS |
| CGAAGTCAGGAGACACAAAA+TGG | 0.444863 | 2_1:-25996478 | Msa0202970:CDS |
| AGGATCATTCAGGATTAACT+TGG | 0.448406 | 2_1:-25996388 | Msa0202970:CDS |
| GAAGCAGGGGAGGAGATTAT+GGG | 0.448431 | 2_1:-25996350 | Msa0202970:CDS |
| ATTCCGATGGAGGTGAAATA+CGG | 0.449887 | 2_1:-25997303 | Msa0202970:CDS |
| TTCAAGAGATGGTGGATGCT+GGG | 0.453587 | 2_1:-25996868 | Msa0202970:CDS |
| TTTGATCTCCTTGATTCCGA+TGG | 0.453893 | 2_1:-25997316 | Msa0202970:CDS |
| GCTCCAAATGCTGGTAGTAA+TGG | 0.459212 | 2_1:-25997553 | Msa0202970:CDS |
| GCGGTGAGATTTACCGCCAT+TGG | 0.459401 | 2_1:+26000203 | None:intergenic |
| GAATTCAGTGGAAAGTCTAT+AGG | 0.459727 | 2_1:-25996806 | Msa0202970:CDS |
| TTTAGCAGTAAAGGCTGGTA+AGG | 0.460163 | 2_1:-25996834 | Msa0202970:CDS |
| TACCTGATTGTGAAATCATT+GGG | 0.460436 | 2_1:-25997765 | Msa0202970:CDS |
| TGATTGAAATTCTTCTGTGC+AGG | 0.460517 | 2_1:+25997193 | None:intergenic |
| AATAAGAAAGTGACGAAGTC+AGG | 0.461922 | 2_1:-25996491 | Msa0202970:CDS |
| GTAACTGCTTTCCAGGAAGC+AGG | 0.462729 | 2_1:-25996365 | Msa0202970:CDS |
| TAAAGCGGAGGAGGTTGGTA+TGG | 0.464313 | 2_1:+25997502 | None:intergenic |
| TACAGTAGTTAAGGCAGATA+AGG | 0.467853 | 2_1:-25996177 | Msa0202970:CDS |
| GAATGAATGGGAAATTATGC+TGG | 0.470378 | 2_1:-25997164 | Msa0202970:CDS |
| GAAGAAGACGGTAACGTTGT+TGG | 0.471806 | 2_1:+26000084 | None:intergenic |
| CCGTTTCTATGAAGCAATTG+AGG | 0.474581 | 2_1:-25997254 | Msa0202970:CDS |
| AAGGCAAGGGTTACTGCAAA+AGG | 0.476738 | 2_1:-25997388 | Msa0202970:CDS |
| GTTCCCATCGTAAGGAAGAA+TGG | 0.477384 | 2_1:-25996992 | Msa0202970:CDS |
| GCTCAAAATGCTGGTAGTAA+TGG | 0.484784 | 2_1:-25997643 | Msa0202970:CDS |
| TTCGTCACTTTCTTATTGCA+CGG | 0.485857 | 2_1:+25996497 | None:intergenic |
| TGTTGTAAAGCGGAGGAGGT+TGG | 0.489573 | 2_1:+25997587 | None:intergenic |
| AATGATCCTGGATTTGAGCT+TGG | 0.492318 | 2_1:+25996402 | None:intergenic |
| AAGTTAATCCTGAATGATCC+TGG | 0.493959 | 2_1:+25996390 | None:intergenic |
| TAGGGATTTAAAGCAGCTAT+AGG | 0.496621 | 2_1:+25997430 | None:intergenic |
| TTTCACCTCCATCGGAATCA+AGG | 0.500395 | 2_1:+25997308 | None:intergenic |
| TATGCTGGATTTAAATTCAA+CGG | 0.500855 | 2_1:-25997149 | Msa0202970:CDS |
| TACCCGTATTTCACCTCCAT+CGG | 0.501159 | 2_1:+25997300 | None:intergenic |
| GCTATAGGTATTACACGTGC+TGG | 0.503122 | 2_1:+25997445 | None:intergenic |
| GCTATTCCGGCGATAATCGC+CGG | 0.503326 | 2_1:-26000176 | Msa0202970:CDS |
| TAGATGCAACCAGGAGTTTG+AGG | 0.505007 | 2_1:-25996447 | Msa0202970:CDS |
| AATTTGGCTGCTCCAAATGC+TGG | 0.507899 | 2_1:-25997562 | Msa0202970:CDS |
| TGCTATCCTTGATGTTATTG+GGG | 0.509422 | 2_1:-25997038 | Msa0202970:CDS |
| AGCGGAGGAGGTTGGTATGG+AGG | 0.511425 | 2_1:+25997505 | None:intergenic |
| GATTATTATGGTGCTTAACA+TGG | 0.514700 | 2_1:-25997797 | Msa0202970:CDS |
| CGGTTTGGCGTTGACGTCGC+CGG | 0.514843 | 2_1:+26000157 | None:intergenic |
| ATCCTTCAGTTCCCATCGTA+AGG | 0.516057 | 2_1:-25997000 | Msa0202970:CDS |
| ACGTCGCCGGCGATTATCGC+CGG | 0.516823 | 2_1:+26000170 | None:intergenic |
| TTCTATGAAGCAATTGAGGT+TGG | 0.517168 | 2_1:-25997250 | Msa0202970:CDS |
| AGATTTACCGCCATTGGTGG+TGG | 0.518217 | 2_1:+26000209 | None:intergenic |
| ATTCCATTCTTCCTTACGAT+GGG | 0.519102 | 2_1:+25996989 | None:intergenic |
| ACAGTCTCAATGTCACTGAT+AGG | 0.519707 | 2_1:+25997070 | None:intergenic |
| GATCTCCTTGATTCCGATGG+AGG | 0.519739 | 2_1:-25997313 | Msa0202970:CDS |
| TATAACAATGCTCGTGGAGA+TGG | 0.523700 | 2_1:-25997352 | Msa0202970:CDS |
| CGACCTTTGTAAAGCGGAGG+AGG | 0.525294 | 2_1:+25997493 | None:intergenic |
| TCAGGGTAGGTGGGCCATCA+AGG | 0.528250 | 2_1:-25997407 | Msa0202970:CDS |
| CTGAAGGAGAATTGTTGTCT+AGG | 0.528586 | 2_1:+25997094 | None:intergenic |
| GTGGTTGTTGCGGTTGTGTG+TGG | 0.529612 | 2_1:+26000228 | None:intergenic |
| AATTTGGCTGCTCAAAATGC+TGG | 0.530811 | 2_1:-25997652 | Msa0202970:CDS |
| CATTCCATTCTTCCTTACGA+TGG | 0.533999 | 2_1:+25996988 | None:intergenic |
| GAGCTTTGCCCAGATGAGGA+TGG | 0.534821 | 2_1:-25997124 | Msa0202970:CDS |
| CCTGGATTTGAGCTTGGAGA+AGG | 0.534963 | 2_1:+25996408 | None:intergenic |
| AATCACATTCCTCAAACTCC+TGG | 0.536282 | 2_1:+25996438 | None:intergenic |
| ATTTCTAAGGACATCACTCA+TGG | 0.537700 | 2_1:-25996680 | Msa0202970:CDS |
| TATCGCCGGAATAGCGTTTG+CGG | 0.537944 | 2_1:+26000184 | None:intergenic |
| GAGAACTTGAAGTAACGGTT+TGG | 0.539039 | 2_1:+26000142 | None:intergenic |
| GTATGTGTTGAAGTATGAAC+AGG | 0.543799 | 2_1:-25996309 | Msa0202970:CDS |
| ATGGCCCACCTACCCTGATA+GGG | 0.544473 | 2_1:+25997412 | None:intergenic |
| AAAGTTTACTTGATATCGAA+AGG | 0.544592 | 2_1:-25997226 | Msa0202970:CDS |
| TAAATCCCTATCAGGGTAGG+TGG | 0.547460 | 2_1:-25997417 | Msa0202970:CDS |
| GTAGGTGGGCCATCAAGGCA+AGG | 0.549490 | 2_1:-25997402 | Msa0202970:CDS |
| TTCCTTACGATGGGAACTGA+AGG | 0.549709 | 2_1:+25996998 | None:intergenic |
| TGGTATTGAGGTTGAACTGT+TGG | 0.550725 | 2_1:+25997607 | None:intergenic |
| AGGCTCAGACCTTAAGAACC+TGG | 0.553217 | 2_1:-25996739 | Msa0202970:CDS |
| CTTTGTAAAGCGGAGGAGGT+TGG | 0.553943 | 2_1:+25997497 | None:intergenic |
| TTTCCCAACTTGATCAAACC+AGG | 0.554457 | 2_1:+25996721 | None:intergenic |
| AGAGTGTTGAGCTAACACTT+TGG | 0.559856 | 2_1:-25996922 | Msa0202970:CDS |
| TGGAATGGAAACACTGAGAA+GGG | 0.560059 | 2_1:-25996972 | Msa0202970:CDS |
| GCCATTGGTGGTGGTTGTTG+CGG | 0.561669 | 2_1:+26000218 | None:intergenic |
| CGCCGCTATAACAATGCTCG+TGG | 0.561907 | 2_1:-25997358 | Msa0202970:CDS |
| CCTTCTCCAAGCTCAAATCC+AGG | 0.562294 | 2_1:-25996408 | Msa0202970:CDS |
| CCTCAATTGCTTCATAGAAA+CGG | 0.565250 | 2_1:+25997254 | None:intergenic |
| CATCGTAAGGAAGAATGGAA+TGG | 0.565891 | 2_1:-25996987 | Msa0202970:CDS |
| ATGGAATGGAAACACTGAGA+AGG | 0.567325 | 2_1:-25996973 | Msa0202970:CDS |
| TGCTTTCCAGGAAGCAGGGG+AGG | 0.568330 | 2_1:-25996360 | Msa0202970:CDS |
| CCTCCGCTTTACAAAGGTCG+TGG | 0.571787 | 2_1:-25997490 | Msa0202970:CDS |
| TTGCCTGATAACACTGTGGC+TGG | 0.572437 | 2_1:-25997697 | Msa0202970:CDS |
| TAACTGCTTTCCAGGAAGCA+GGG | 0.573726 | 2_1:-25996364 | Msa0202970:CDS |
| TCAAGAGATGGTGGATGCTG+GGG | 0.574359 | 2_1:-25996867 | Msa0202970:CDS |
| AAATTAAAGATGAAGATCTA+GGG | 0.575955 | 2_1:-25996622 | Msa0202970:CDS |
| GGTTGAGCTTTGCCCAGATG+AGG | 0.577862 | 2_1:-25997128 | Msa0202970:CDS |
| GTGAGATTTACCGCCATTGG+TGG | 0.579691 | 2_1:+26000206 | None:intergenic |
| GCTGCTTTAAATCCCTATCA+GGG | 0.580315 | 2_1:-25997424 | Msa0202970:CDS |
| TGGTATGGAGGTTGAACTGT+TGG | 0.582038 | 2_1:+25997517 | None:intergenic |
| ATGTCGAGAACTTGAAGTAA+CGG | 0.582274 | 2_1:+26000137 | None:intergenic |
| CAAGCTACAATCACTGCCTA+CGG | 0.586389 | 2_1:+25996105 | None:intergenic |
| GTATAGAACCATCCTCATCT+GGG | 0.586999 | 2_1:+25997116 | None:intergenic |
| AATGTCACTGATAGGTCTGA+AGG | 0.587612 | 2_1:+25997078 | None:intergenic |
| ATTATATAATGACGAACAGA+AGG | 0.587920 | 2_1:-25996207 | Msa0202970:CDS |
| TTTCTAAGGACATCACTCAT+GGG | 0.588441 | 2_1:-25996679 | Msa0202970:CDS |
| AACTGCTTTCCAGGAAGCAG+GGG | 0.589254 | 2_1:-25996363 | Msa0202970:CDS |
| ATCGGTCCTCATGAATGATA+CGG | 0.591847 | 2_1:+25996562 | None:intergenic |
| AGGACAAAAGCTTCAAGAGA+TGG | 0.592318 | 2_1:-25996879 | Msa0202970:CDS |
| TTCCGATGGAGGTGAAATAC+GGG | 0.595001 | 2_1:-25997302 | Msa0202970:CDS |
| GGTAAGGTTAATGAATTCAG+TGG | 0.596983 | 2_1:-25996818 | Msa0202970:CDS |
| ACAAAAGCTTCAAGAGATGG+TGG | 0.598927 | 2_1:-25996876 | Msa0202970:CDS |
| TGAATTATTCTGCAGAGAGT+AGG | 0.600929 | 2_1:-25996154 | Msa0202970:CDS |
| CTCCACGAGCATTGTTATAG+CGG | 0.600995 | 2_1:+25997356 | None:intergenic |
| CATAGCGTGATGAGACGAAA+CGG | 0.603251 | 2_1:+26000052 | None:intergenic |
| TAGGTGGGCCATCAAGGCAA+GGG | 0.604948 | 2_1:-25997401 | Msa0202970:CDS |
| TCACAACCCCAATAACATCA+AGG | 0.606648 | 2_1:+25997032 | None:intergenic |
| CTTTAAATCCCTATCAGGGT+AGG | 0.611287 | 2_1:-25997420 | Msa0202970:CDS |
| TAATACTTGCGATTCTGAAG+CGG | 0.611376 | 2_1:+25999945 | None:intergenic |
| GTCGATCTCCAATCATCAGA+GGG | 0.611616 | 2_1:+25996519 | None:intergenic |
| AGCTGTGTAACAAAATGGAT+CGG | 0.612353 | 2_1:+25996544 | None:intergenic |
| GGATCATTCAGGATTAACTT+GGG | 0.613069 | 2_1:-25996387 | Msa0202970:CDS |
| GACTCGGTCGTTGAGTTGAG+CGG | 0.615017 | 2_1:+26000025 | None:intergenic |
| TTCTTAAGGTCTGAGCCTCA+GGG | 0.623006 | 2_1:+25996744 | None:intergenic |
| GTTTAGGCTGAAAATCAAAG+AGG | 0.625551 | 2_1:-25996231 | Msa0202970:CDS |
| GGTGAATTCTGCAACAGGGA+AGG | 0.626099 | 2_1:-25996899 | Msa0202970:CDS |
| TTCTAAGGACATCACTCATG+GGG | 0.629562 | 2_1:-25996678 | Msa0202970:CDS |
| GCCAGACTGGATAACAATGA+GGG | 0.637901 | 2_1:-25996588 | Msa0202970:CDS |
| GGTCGATCTCCAATCATCAG+AGG | 0.638969 | 2_1:+25996518 | None:intergenic |
| AAATCCCTATCAGGGTAGGT+GGG | 0.640512 | 2_1:-25997416 | Msa0202970:CDS |
| CAACCTCCTCCGCTTTACAA+AGG | 0.641625 | 2_1:-25997496 | Msa0202970:CDS |
| GCAACAACCACCACCAATGG+CGG | 0.645667 | 2_1:-26000216 | Msa0202970:exon |
| GTGATGAGACGAAACGGCGT+CGG | 0.651118 | 2_1:+26000058 | None:intergenic |
| AGCCAGACTGGATAACAATG+AGG | 0.656016 | 2_1:-25996589 | Msa0202970:CDS |
| CAGCCTTTACTGCTAAAATG+GGG | 0.656745 | 2_1:+25996840 | None:intergenic |
| TAACTCGTCCAGTATTGACT+CGG | 0.656872 | 2_1:+26000009 | None:intergenic |
| GCACCACGACCTTTGTAAAG+CGG | 0.657064 | 2_1:+25997487 | None:intergenic |
| GTAATCGAGAAGCTGAACGA+TGG | 0.661747 | 2_1:+25999977 | None:intergenic |
| CCACGACCTTTGTAAAGCGG+AGG | 0.662907 | 2_1:+25997490 | None:intergenic |
| GCAGTGTGATAGATGCAACC+AGG | 0.664374 | 2_1:-25996456 | Msa0202970:CDS |
| AATACTGGACGAGTTAAGCA+AGG | 0.673990 | 2_1:-26000002 | Msa0202970:CDS |
| TGTGTTGAAGTATGAACAGG+AGG | 0.677244 | 2_1:-25996306 | Msa0202970:CDS |
| GGGCAACCGTATCATTCATG+AGG | 0.684770 | 2_1:-25996568 | Msa0202970:CDS |
| AGTGTTGAGCTAACACTTTG+GGG | 0.692814 | 2_1:-25996920 | Msa0202970:CDS |
| CATAAATCCAGATTTCCCTG+AGG | 0.709312 | 2_1:-25996759 | Msa0202970:CDS |
| TTGGGGTGAATTCTGCAACA+GGG | 0.712179 | 2_1:-25996903 | Msa0202970:CDS |
| CGGCGTCGGAGAGAAGAAGA+CGG | 0.718695 | 2_1:+26000072 | None:intergenic |
| AAGCAGGGGAGGAGATTATG+GGG | 0.738154 | 2_1:-25996349 | Msa0202970:CDS |
| TCTAAGGACATCACTCATGG+GGG | 0.753824 | 2_1:-25996677 | Msa0202970:CDS |
| AGCATTGCCTGATAACACTG+TGG | 0.782811 | 2_1:-25997701 | Msa0202970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATTATTATTAATATTTC+TGG | + | chr2_1:25998697-25998716 | None:intergenic | 10.0% |
| !! | CAGAAATATTAATAATAATT+TGG | - | chr2_1:25998695-25998714 | Msa0202970:intron | 10.0% |
| !! | TTAAGTGATTAATTGATTAT+CGG | - | chr2_1:25996480-25996499 | Msa0202970:CDS | 15.0% |
| !! | TAAGAATTAGTGTATGAATT+AGG | - | chr2_1:25996595-25996614 | Msa0202970:CDS | 20.0% |
| !!! | TGTGATTTTCACTTTTTATT+AGG | - | chr2_1:25996694-25996713 | Msa0202970:CDS | 20.0% |
| !!! | AAGTTGTATTTCTAAGAATT+AGG | - | chr2_1:25996912-25996931 | Msa0202970:CDS | 20.0% |
| !!! | TATTTCTAAGAATTAGGATA+TGG | - | chr2_1:25996918-25996937 | Msa0202970:CDS | 20.0% |
| !!! | TTATGTACATTTCACTTTTT+AGG | - | chr2_1:25997019-25997038 | Msa0202970:CDS | 20.0% |
| !! | TAATTGTTAGTGTAAGAATT+AGG | - | chr2_1:25997642-25997661 | Msa0202970:CDS | 20.0% |
| !!! | TGTATCATCAATAACATTTT+AGG | + | chr2_1:25997800-25997819 | None:intergenic | 20.0% |
| !!! | AACATTTTAGGTTGAAAATT+TGG | + | chr2_1:25997788-25997807 | None:intergenic | 20.0% |
| !!! | ATTTTCAACCTAAAATGTTA+TGG | - | chr2_1:25997789-25997808 | Msa0202970:CDS | 20.0% |
| !!! | AATGTTTTAGGTTGAAATTT+TGG | + | chr2_1:25998210-25998229 | None:intergenic | 20.0% |
| !! | TACATAAGTGTTATATTCTT+TGG | - | chr2_1:25998253-25998272 | Msa0202970:intron | 20.0% |
| !! | TGTATCATCTATAATGTTTA+GGG | + | chr2_1:25998425-25998444 | None:intergenic | 20.0% |
| !! | ATGTATCATCTATAATGTTT+AGG | + | chr2_1:25998426-25998445 | None:intergenic | 20.0% |
| !! | AAATTAAAGATGAAGATCTA+GGG | - | chr2_1:25999741-25999760 | Msa0202970:intron | 20.0% |
| ! | AAGTTGCATTTGTAAGAATT+AGG | - | chr2_1:25996747-25996766 | Msa0202970:CDS | 25.0% |
| !!! | TTATGTGCATTTCACTTTTT+AGG | - | chr2_1:25996859-25996878 | Msa0202970:CDS | 25.0% |
| !! | CAAATTTTGAACTAAAGCAA+TGG | + | chr2_1:25997588-25997607 | None:intergenic | 25.0% |
| ! | TTAGTGATAGTATTAGGATA+TGG | - | chr2_1:25997870-25997889 | Msa0202970:intron | 25.0% |
| !! | GTGATAGTTAAATTACGTTT+TGG | - | chr2_1:25997910-25997929 | Msa0202970:intron | 25.0% |
| !! | ATAATGTTTAGGGTGAAAAT+TGG | + | chr2_1:25998415-25998434 | None:intergenic | 25.0% |
| ! | AAAGTTTACTTGATATCGAA+AGG | - | chr2_1:25999137-25999156 | Msa0202970:intron | 25.0% |
| ! | TCAATCATTTGAAGAATGAA+TGG | - | chr2_1:25999186-25999205 | Msa0202970:intron | 25.0% |
| ! | CAATCATTTGAAGAATGAAT+GGG | - | chr2_1:25999187-25999206 | Msa0202970:intron | 25.0% |
| ! | TATGCTGGATTTAAATTCAA+CGG | - | chr2_1:25999214-25999233 | Msa0202970:intron | 25.0% |
| ! | CAAATTAAAGATGAAGATCT+AGG | - | chr2_1:25999740-25999759 | Msa0202970:intron | 25.0% |
| ! | ATTATATAATGACGAACAGA+AGG | - | chr2_1:26000156-26000175 | Msa0202970:CDS | 25.0% |
| CATTTGTAAGAATTAGGTGA+TGG | - | chr2_1:25996753-25996772 | Msa0202970:CDS | 30.0% | |
| !! | ATACAACTTCTAGAACGATT+AGG | + | chr2_1:25996901-25996920 | None:intergenic | 30.0% |
| GTTATCACATTTCATCAACA+AGG | + | chr2_1:25996946-25996965 | None:intergenic | 30.0% | |
| AACGTTCTGATAGATGTATT+TGG | - | chr2_1:25997063-25997082 | Msa0202970:CDS | 30.0% | |
| ACTATAACACTTTATTGTGG+CGG | + | chr2_1:25997416-25997435 | None:intergenic | 30.0% | |
| TAGTCAAATAGCAACTATAG+CGG | + | chr2_1:25997440-25997459 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTTCTTGTATCCCT+TGG | - | chr2_1:25997617-25997636 | Msa0202970:CDS | 30.0% |
| ! | TTTAGTTTCTTGTATCCCTT+GGG | - | chr2_1:25997618-25997637 | Msa0202970:CDS | 30.0% |
| TACACTAACAATTAACCCAA+GGG | + | chr2_1:25997636-25997655 | None:intergenic | 30.0% | |
| TTACACTAACAATTAACCCA+AGG | + | chr2_1:25997637-25997656 | None:intergenic | 30.0% | |
| GAGTGATTAGTGATAGTATT+AGG | - | chr2_1:25997864-25997883 | Msa0202970:intron | 30.0% | |
| ! | TGCATCATCCATAACATTTT+AGG | + | chr2_1:25998016-25998035 | None:intergenic | 30.0% |
| AATGTTATGGATGATGCATT+TGG | - | chr2_1:25998018-25998037 | Msa0202970:intron | 30.0% | |
| TGATTAATGTTATGGAACCT+CGG | - | chr2_1:25998083-25998102 | Msa0202970:intron | 30.0% | |
| ! | TGCATCATCTACAATGTTTT+AGG | + | chr2_1:25998222-25998241 | None:intergenic | 30.0% |
| AACATTGTAGATGATGCATT+TGG | - | chr2_1:25998224-25998243 | Msa0202970:intron | 30.0% | |
| AGATGATACATTAGAGCTTA+TGG | - | chr2_1:25998435-25998454 | Msa0202970:intron | 30.0% | |
| ! | AATGCATCATAACTGACTTT+AGG | - | chr2_1:25998490-25998509 | Msa0202970:intron | 30.0% |
| TTCCTTGTACAGGATTATTA+TGG | - | chr2_1:25998554-25998573 | Msa0202970:intron | 30.0% | |
| GATTATTATGGTGCTTAACA+TGG | - | chr2_1:25998566-25998585 | Msa0202970:intron | 30.0% | |
| GATTTCACAATCAGGTATTA+TGG | + | chr2_1:25998595-25998614 | None:intergenic | 30.0% | |
| ATACCTGATTGTGAAATCAT+TGG | - | chr2_1:25998597-25998616 | Msa0202970:intron | 30.0% | |
| TACCTGATTGTGAAATCATT+GGG | - | chr2_1:25998598-25998617 | Msa0202970:intron | 30.0% | |
| !! | AAATTTTTGTTGTAAAGCGG+AGG | + | chr2_1:25998786-25998805 | None:intergenic | 30.0% |
| TCCGCTTTACAACAAAAATT+TGG | - | chr2_1:25998785-25998804 | Msa0202970:intron | 30.0% | |
| !! | GCCAAATTTTTGTTGTAAAG+CGG | + | chr2_1:25998789-25998808 | None:intergenic | 30.0% |
| AATGCTATCCTTGATGTTAT+TGG | - | chr2_1:25999323-25999342 | Msa0202970:intron | 30.0% | |
| ATGCTATCCTTGATGTTATT+GGG | - | chr2_1:25999324-25999343 | Msa0202970:intron | 30.0% | |
| TTGAATCTAAAGGACAATTC+TGG | - | chr2_1:25999416-25999435 | Msa0202970:intron | 30.0% | |
| TCTTCAATGAGTTTGTGTTT+AGG | - | chr2_1:26000116-26000135 | Msa0202970:CDS | 30.0% | |
| !! | ATTTTATTTCCAAGTTCCGT+AGG | - | chr2_1:26000242-26000261 | Msa0202970:five_prime_UTR | 30.0% |
| ! | GTGTGTGGAGAAAGAAATTT+TGG | + | chr2_1:25996123-25996142 | None:intergenic | 35.0% |
| ATGTCGAGAACTTGAAGTAA+CGG | + | chr2_1:25996229-25996248 | None:intergenic | 35.0% | |
| ! | TAATACTTGCGATTCTGAAG+CGG | + | chr2_1:25996421-25996440 | None:intergenic | 35.0% |
| !!! | TTGTGTGCGTTTTGCTTTTT+AGG | - | chr2_1:25996530-25996549 | Msa0202970:CDS | 35.0% |
| GTCAAATAGCTGTCAAAACA+TGG | + | chr2_1:25997183-25997202 | None:intergenic | 35.0% | |
| !! | CAGAAGTGCTTTAGTTCAAA+TGG | - | chr2_1:25997263-25997282 | Msa0202970:CDS | 35.0% |
| !! | GTTCAAATGGATTACATCAG+CGG | - | chr2_1:25997276-25997295 | Msa0202970:CDS | 35.0% |
| GGCACTATAACACTTTATTG+TGG | + | chr2_1:25997419-25997438 | None:intergenic | 35.0% | |
| ! | ACATAAGTGTTAGCTTCTTG+TGG | - | chr2_1:25998048-25998067 | Msa0202970:intron | 35.0% |
| TGGGCGAATGATTAATGTTA+TGG | - | chr2_1:25998075-25998094 | Msa0202970:intron | 35.0% | |
| ATTATCATAGTTCACTACCG+AGG | + | chr2_1:25998103-25998122 | None:intergenic | 35.0% | |
| GTAACTTCAGTGAAGAATTG+TGG | - | chr2_1:25998301-25998320 | Msa0202970:intron | 35.0% | |
| !! | GTGTTTGTTTTTCCTTGTAC+AGG | - | chr2_1:25998544-25998563 | Msa0202970:intron | 35.0% |
| CACCATAATAATCCTGTACA+AGG | + | chr2_1:25998559-25998578 | None:intergenic | 35.0% | |
| TTCCCAATGATTTCACAATC+AGG | + | chr2_1:25998603-25998622 | None:intergenic | 35.0% | |
| TCTGAATCCACAAATGACTT+TGG | + | chr2_1:25998627-25998646 | None:intergenic | 35.0% | |
| CTCAAAATGCTGGTAGTAAT+GGG | - | chr2_1:25998721-25998740 | Msa0202970:intron | 35.0% | |
| TGGTGCAGTTATGAAAAATG+AGG | - | chr2_1:25998893-25998912 | Msa0202970:intron | 35.0% | |
| ! | TAGGGATTTAAAGCAGCTAT+AGG | + | chr2_1:25998936-25998955 | None:intergenic | 35.0% |
| CCTCAATTGCTTCATAGAAA+CGG | + | chr2_1:25999112-25999131 | None:intergenic | 35.0% | |
| TTCTATGAAGCAATTGAGGT+TGG | - | chr2_1:25999113-25999132 | Msa0202970:intron | 35.0% | |
| TGATTGAAATTCTTCTGTGC+AGG | + | chr2_1:25999173-25999192 | None:intergenic | 35.0% | |
| GAATGAATGGGAAATTATGC+TGG | - | chr2_1:25999199-25999218 | Msa0202970:intron | 35.0% | |
| TGCTATCCTTGATGTTATTG+GGG | - | chr2_1:25999325-25999344 | Msa0202970:intron | 35.0% | |
| ATTCCATTCTTCCTTACGAT+GGG | + | chr2_1:25999377-25999396 | None:intergenic | 35.0% | |
| !!! | GAGAAGGGTTTTGAATCTAA+AGG | - | chr2_1:25999406-25999425 | Msa0202970:intron | 35.0% |
| !! | TTTCCCCATTTTAGCAGTAA+AGG | - | chr2_1:25999520-25999539 | Msa0202970:intron | 35.0% |
| GGTAAGGTTAATGAATTCAG+TGG | - | chr2_1:25999545-25999564 | Msa0202970:intron | 35.0% | |
| GAATTCAGTGGAAAGTCTAT+AGG | - | chr2_1:25999557-25999576 | Msa0202970:intron | 35.0% | |
| TTGATCAAACCAGGTTCTTA+AGG | + | chr2_1:25999636-25999655 | None:intergenic | 35.0% | |
| TGCTTCTCTATCCATTTCTA+AGG | - | chr2_1:25999670-25999689 | Msa0202970:intron | 35.0% | |
| ATGAGTGATGTCCTTAGAAA+TGG | + | chr2_1:25999684-25999703 | None:intergenic | 35.0% | |
| ! | ATTTCTAAGGACATCACTCA+TGG | - | chr2_1:25999683-25999702 | Msa0202970:intron | 35.0% |
| ! | TTTCTAAGGACATCACTCAT+GGG | - | chr2_1:25999684-25999703 | Msa0202970:intron | 35.0% |
| ! | GTTTTGCGTATCTCATTCTT+GGG | + | chr2_1:25999713-25999732 | None:intergenic | 35.0% |
| ! | AGTTTTGCGTATCTCATTCT+TGG | + | chr2_1:25999714-25999733 | None:intergenic | 35.0% |
| AGCTGTGTAACAAAATGGAT+CGG | + | chr2_1:25999822-25999841 | None:intergenic | 35.0% | |
| ! | TTCGTCACTTTCTTATTGCA+CGG | + | chr2_1:25999869-25999888 | None:intergenic | 35.0% |
| AATAAGAAAGTGACGAAGTC+AGG | - | chr2_1:25999872-25999891 | Msa0202970:intron | 35.0% | |
| AAGTTAATCCTGAATGATCC+TGG | + | chr2_1:25999976-25999995 | None:intergenic | 35.0% | |
| AGGATCATTCAGGATTAACT+TGG | - | chr2_1:25999975-25999994 | Msa0202970:CDS | 35.0% | |
| GGATCATTCAGGATTAACTT+GGG | - | chr2_1:25999976-25999995 | Msa0202970:CDS | 35.0% | |
| GTATGTGTTGAAGTATGAAC+AGG | - | chr2_1:26000054-26000073 | Msa0202970:CDS | 35.0% | |
| GTTTAGGCTGAAAATCAAAG+AGG | - | chr2_1:26000132-26000151 | Msa0202970:CDS | 35.0% | |
| GGTGAAGATTACAGTAGTTA+AGG | - | chr2_1:26000177-26000196 | Msa0202970:CDS | 35.0% | |
| TACAGTAGTTAAGGCAGATA+AGG | - | chr2_1:26000186-26000205 | Msa0202970:CDS | 35.0% | |
| TGAATTATTCTGCAGAGAGT+AGG | - | chr2_1:26000209-26000228 | Msa0202970:exon | 35.0% | |
| GAGAACTTGAAGTAACGGTT+TGG | + | chr2_1:25996224-25996243 | None:intergenic | 40.0% | |
| !! | ACGTTGTTGGTGAGAGTTTT+TGG | + | chr2_1:25996269-25996288 | None:intergenic | 40.0% |
| !! | TAACTCGTCCAGTATTGACT+CGG | + | chr2_1:25996357-25996376 | None:intergenic | 40.0% |
| AATACTGGACGAGTTAAGCA+AGG | - | chr2_1:25996361-25996380 | Msa0202970:CDS | 40.0% | |
| ! | GAATCAGTGTTGTTAGATCG+TGG | - | chr2_1:25997085-25997104 | Msa0202970:CDS | 40.0% |
| ! | TGTTAGCTTCTTCTATCTCC+TGG | - | chr2_1:25997839-25997858 | Msa0202970:intron | 40.0% |
| ! | GTTAGCTTCTTCTATCTCCT+GGG | - | chr2_1:25997840-25997859 | Msa0202970:intron | 40.0% |
| TGGGAATCCAAAGTCATTTG+TGG | - | chr2_1:25998617-25998636 | Msa0202970:intron | 40.0% | |
| AATTTGGCTGCTCAAAATGC+TGG | - | chr2_1:25998711-25998730 | Msa0202970:intron | 40.0% | |
| GCTCAAAATGCTGGTAGTAA+TGG | - | chr2_1:25998720-25998739 | Msa0202970:intron | 40.0% | |
| !! | GTAGTAATGGGCAGAATTTC+AGG | - | chr2_1:25998733-25998752 | Msa0202970:intron | 40.0% |
| ! | TGGTATTGAGGTTGAACTGT+TGG | + | chr2_1:25998759-25998778 | None:intergenic | 40.0% |
| !! | TTTTTGTTGTAAAGCGGAGG+AGG | + | chr2_1:25998783-25998802 | None:intergenic | 40.0% |
| CTCCAAATGCTGGTAGTAAT+GGG | - | chr2_1:25998811-25998830 | Msa0202970:intron | 40.0% | |
| !! | GTAGTAATGGGCAGAATTTC+AGG | - | chr2_1:25998733-25998752 | Msa0202970:intron | 40.0% |
| ! | AGCTGCTTTAAATCCCTATC+AGG | - | chr2_1:25998938-25998957 | Msa0202970:intron | 40.0% |
| ! | GCTGCTTTAAATCCCTATCA+GGG | - | chr2_1:25998939-25998958 | Msa0202970:intron | 40.0% |
| CTTTAAATCCCTATCAGGGT+AGG | - | chr2_1:25998943-25998962 | Msa0202970:intron | 40.0% | |
| TATAACAATGCTCGTGGAGA+TGG | - | chr2_1:25999011-25999030 | Msa0202970:intron | 40.0% | |
| TTTGATCTCCTTGATTCCGA+TGG | - | chr2_1:25999047-25999066 | Msa0202970:intron | 40.0% | |
| ATTCCGATGGAGGTGAAATA+CGG | - | chr2_1:25999060-25999079 | Msa0202970:intron | 40.0% | |
| CCGTTTCTATGAAGCAATTG+AGG | - | chr2_1:25999109-25999128 | Msa0202970:intron | 40.0% | |
| GTATAGAACCATCCTCATCT+GGG | + | chr2_1:25999250-25999269 | None:intergenic | 40.0% | |
| CTGAAGGAGAATTGTTGTCT+AGG | + | chr2_1:25999272-25999291 | None:intergenic | 40.0% | |
| AATGTCACTGATAGGTCTGA+AGG | + | chr2_1:25999288-25999307 | None:intergenic | 40.0% | |
| ACAGTCTCAATGTCACTGAT+AGG | + | chr2_1:25999296-25999315 | None:intergenic | 40.0% | |
| TCACAACCCCAATAACATCA+AGG | + | chr2_1:25999334-25999353 | None:intergenic | 40.0% | |
| CATTCCATTCTTCCTTACGA+TGG | + | chr2_1:25999378-25999397 | None:intergenic | 40.0% | |
| CATCGTAAGGAAGAATGGAA+TGG | - | chr2_1:25999376-25999395 | Msa0202970:intron | 40.0% | |
| ATGGAATGGAAACACTGAGA+AGG | - | chr2_1:25999390-25999409 | Msa0202970:intron | 40.0% | |
| TGGAATGGAAACACTGAGAA+GGG | - | chr2_1:25999391-25999410 | Msa0202970:intron | 40.0% | |
| !! | AGAGTGTTGAGCTAACACTT+TGG | - | chr2_1:25999441-25999460 | Msa0202970:intron | 40.0% |
| !! | GAGTGTTGAGCTAACACTTT+GGG | - | chr2_1:25999442-25999461 | Msa0202970:intron | 40.0% |
| ! | AGTGTTGAGCTAACACTTTG+GGG | - | chr2_1:25999443-25999462 | Msa0202970:intron | 40.0% |
| AGGACAAAAGCTTCAAGAGA+TGG | - | chr2_1:25999484-25999503 | Msa0202970:intron | 40.0% | |
| ACAAAAGCTTCAAGAGATGG+TGG | - | chr2_1:25999487-25999506 | Msa0202970:intron | 40.0% | |
| CAGCCTTTACTGCTAAAATG+GGG | + | chr2_1:25999526-25999545 | None:intergenic | 40.0% | |
| CCAGCCTTTACTGCTAAAAT+GGG | + | chr2_1:25999527-25999546 | None:intergenic | 40.0% | |
| ACCAGCCTTTACTGCTAAAA+TGG | + | chr2_1:25999528-25999547 | None:intergenic | 40.0% | |
| TTTAGCAGTAAAGGCTGGTA+AGG | - | chr2_1:25999529-25999548 | Msa0202970:intron | 40.0% | |
| CATAAATCCAGATTTCCCTG+AGG | - | chr2_1:25999604-25999623 | Msa0202970:intron | 40.0% | |
| ! | AGAACCTGGTTTGATCAAGT+TGG | - | chr2_1:25999638-25999657 | Msa0202970:intron | 40.0% |
| ! | GAACCTGGTTTGATCAAGTT+GGG | - | chr2_1:25999639-25999658 | Msa0202970:intron | 40.0% |
| TTTCCCAACTTGATCAAACC+AGG | + | chr2_1:25999645-25999664 | None:intergenic | 40.0% | |
| ! | TTCTAAGGACATCACTCATG+GGG | - | chr2_1:25999685-25999704 | Msa0202970:intron | 40.0% |
| ATCGGTCCTCATGAATGATA+CGG | + | chr2_1:25999804-25999823 | None:intergenic | 40.0% | |
| AATCACATTCCTCAAACTCC+TGG | + | chr2_1:25999928-25999947 | None:intergenic | 40.0% | |
| AATGATCCTGGATTTGAGCT+TGG | + | chr2_1:25999964-25999983 | None:intergenic | 40.0% | |
| TGTGTTGAAGTATGAACAGG+AGG | - | chr2_1:26000057-26000076 | Msa0202970:CDS | 40.0% | |
| GAAGAAGACGGTAACGTTGT+TGG | + | chr2_1:25996282-25996301 | None:intergenic | 45.0% | |
| CATAGCGTGATGAGACGAAA+CGG | + | chr2_1:25996314-25996333 | None:intergenic | 45.0% | |
| GTAATCGAGAAGCTGAACGA+TGG | + | chr2_1:25996389-25996408 | None:intergenic | 45.0% | |
| GGATTACATCAGCGGTACTA+TGG | - | chr2_1:25997284-25997303 | Msa0202970:CDS | 45.0% | |
| CTATCACTAATCACTCTCCC+AGG | + | chr2_1:25997860-25997879 | None:intergenic | 45.0% | |
| ! | TGTTAGCTTCTTGTGGCTCT+TGG | - | chr2_1:25998055-25998074 | Msa0202970:intron | 45.0% |
| ! | GTTAGCTTCTTGTGGCTCTT+GGG | - | chr2_1:25998056-25998075 | Msa0202970:intron | 45.0% |
| TCAGGCAATGCTTTCTGAAC+TGG | + | chr2_1:25998654-25998673 | None:intergenic | 45.0% | |
| AGCATTGCCTGATAACACTG+TGG | - | chr2_1:25998662-25998681 | Msa0202970:intron | 45.0% | |
| AATTTGGCTGCTCCAAATGC+TGG | - | chr2_1:25998801-25998820 | Msa0202970:intron | 45.0% | |
| GCTCCAAATGCTGGTAGTAA+TGG | - | chr2_1:25998810-25998829 | Msa0202970:intron | 45.0% | |
| TGCCCATTACTACCAGCATT+TGG | + | chr2_1:25998726-25998745 | None:intergenic | 45.0% | |
| TGGTATGGAGGTTGAACTGT+TGG | + | chr2_1:25998849-25998868 | None:intergenic | 45.0% | |
| GCTATAGGTATTACACGTGC+TGG | + | chr2_1:25998921-25998940 | None:intergenic | 45.0% | |
| TAAATCCCTATCAGGGTAGG+TGG | - | chr2_1:25998946-25998965 | Msa0202970:intron | 45.0% | |
| AAATCCCTATCAGGGTAGGT+GGG | - | chr2_1:25998947-25998966 | Msa0202970:intron | 45.0% | |
| AAGGCAAGGGTTACTGCAAA+AGG | - | chr2_1:25998975-25998994 | Msa0202970:intron | 45.0% | |
| ! | CTCCACGAGCATTGTTATAG+CGG | + | chr2_1:25999010-25999029 | None:intergenic | 45.0% |
| TTTCACCTCCATCGGAATCA+AGG | + | chr2_1:25999058-25999077 | None:intergenic | 45.0% | |
| TTCCGATGGAGGTGAAATAC+GGG | - | chr2_1:25999061-25999080 | Msa0202970:intron | 45.0% | |
| TACCCGTATTTCACCTCCAT+CGG | + | chr2_1:25999066-25999085 | None:intergenic | 45.0% | |
| GGTATAGAACCATCCTCATC+TGG | + | chr2_1:25999251-25999270 | None:intergenic | 45.0% | |
| ATCCTTCAGTTCCCATCGTA+AGG | - | chr2_1:25999363-25999382 | Msa0202970:intron | 45.0% | |
| TTCCTTACGATGGGAACTGA+AGG | + | chr2_1:25999368-25999387 | None:intergenic | 45.0% | |
| GTTCCCATCGTAAGGAAGAA+TGG | - | chr2_1:25999371-25999390 | Msa0202970:intron | 45.0% | |
| ! | TTTGGGGTGAATTCTGCAAC+AGG | - | chr2_1:25999459-25999478 | Msa0202970:intron | 45.0% |
| TTGGGGTGAATTCTGCAACA+GGG | - | chr2_1:25999460-25999479 | Msa0202970:intron | 45.0% | |
| !! | TTCAAGAGATGGTGGATGCT+GGG | - | chr2_1:25999495-25999514 | Msa0202970:intron | 45.0% |
| !! | CCCATTTTAGCAGTAAAGGC+TGG | - | chr2_1:25999524-25999543 | Msa0202970:intron | 45.0% |
| TTCTTAAGGTCTGAGCCTCA+GGG | + | chr2_1:25999622-25999641 | None:intergenic | 45.0% | |
| TCTAAGGACATCACTCATGG+GGG | - | chr2_1:25999686-25999705 | Msa0202970:intron | 45.0% | |
| AGCCAGACTGGATAACAATG+AGG | - | chr2_1:25999774-25999793 | Msa0202970:intron | 45.0% | |
| GCCAGACTGGATAACAATGA+GGG | - | chr2_1:25999775-25999794 | Msa0202970:intron | 45.0% | |
| GGGCAAGCTGTGTAACAAAA+TGG | + | chr2_1:25999827-25999846 | None:intergenic | 45.0% | |
| GTCGATCTCCAATCATCAGA+GGG | + | chr2_1:25999847-25999866 | None:intergenic | 45.0% | |
| CGAAGTCAGGAGACACAAAA+TGG | - | chr2_1:25999885-25999904 | Msa0202970:intron | 45.0% | |
| TAGATGCAACCAGGAGTTTG+AGG | - | chr2_1:25999916-25999935 | Msa0202970:intron | 45.0% | |
| GCTCAAATCCAGGATCATTC+AGG | - | chr2_1:25999965-25999984 | Msa0202970:CDS | 45.0% | |
| AACTTGGGTAACTGCTTTCC+AGG | - | chr2_1:25999991-26000010 | Msa0202970:CDS | 45.0% | |
| TAACTGCTTTCCAGGAAGCA+GGG | - | chr2_1:25999999-26000018 | Msa0202970:CDS | 45.0% | |
| CAGGAGGATGATGAGAAGTT+TGG | - | chr2_1:26000073-26000092 | Msa0202970:CDS | 45.0% | |
| AGATTTACCGCCATTGGTGG+TGG | + | chr2_1:25996157-25996176 | None:intergenic | 50.0% | |
| GTGAGATTTACCGCCATTGG+TGG | + | chr2_1:25996160-25996179 | None:intergenic | 50.0% | |
| TCTCACCGCAAACGCTATTC+CGG | - | chr2_1:25996174-25996193 | Msa0202970:CDS | 50.0% | |
| TATCGCCGGAATAGCGTTTG+CGG | + | chr2_1:25996182-25996201 | None:intergenic | 50.0% | |
| CTCAACGACCGAGTCAATAC+TGG | - | chr2_1:25996346-25996365 | Msa0202970:CDS | 50.0% | |
| TTGCCTGATAACACTGTGGC+TGG | - | chr2_1:25998666-25998685 | Msa0202970:intron | 50.0% | |
| GAACCAGCCACAGTGTTATC+AGG | + | chr2_1:25998672-25998691 | None:intergenic | 50.0% | |
| TGTTGTAAAGCGGAGGAGGT+TGG | + | chr2_1:25998779-25998798 | None:intergenic | 50.0% | |
| !! | TAAAGCGGAGGAGGTTGGTA+TGG | + | chr2_1:25998774-25998793 | None:intergenic | 50.0% |
| CTTTGTAAAGCGGAGGAGGT+TGG | + | chr2_1:25998869-25998888 | None:intergenic | 50.0% | |
| CAACCTCCTCCGCTTTACAA+AGG | - | chr2_1:25998777-25998796 | Msa0202970:intron | 50.0% | |
| GCACCACGACCTTTGTAAAG+CGG | + | chr2_1:25998879-25998898 | None:intergenic | 50.0% | |
| TGCAGTAACCCTTGCCTTGA+TGG | + | chr2_1:25998973-25998992 | None:intergenic | 50.0% | |
| GATCTCCTTGATTCCGATGG+AGG | - | chr2_1:25999050-25999069 | Msa0202970:intron | 50.0% | |
| GGTGAATTCTGCAACAGGGA+AGG | - | chr2_1:25999464-25999483 | Msa0202970:intron | 50.0% | |
| !! | CTTCAAGAGATGGTGGATGC+TGG | - | chr2_1:25999494-25999513 | Msa0202970:intron | 50.0% |
| !! | TCAAGAGATGGTGGATGCTG+GGG | - | chr2_1:25999496-25999515 | Msa0202970:intron | 50.0% |
| GTTCTTAAGGTCTGAGCCTC+AGG | + | chr2_1:25999623-25999642 | None:intergenic | 50.0% | |
| AGGCTCAGACCTTAAGAACC+TGG | - | chr2_1:25999624-25999643 | Msa0202970:intron | 50.0% | |
| ! | GATGAAGATCTAGGGCGTTC+AGG | - | chr2_1:25999749-25999768 | Msa0202970:intron | 50.0% |
| GCCCTCATTGTTATCCAGTC+TGG | + | chr2_1:25999779-25999798 | None:intergenic | 50.0% | |
| GGGCAACCGTATCATTCATG+AGG | - | chr2_1:25999795-25999814 | Msa0202970:intron | 50.0% | |
| ACAGCTTGCCCTCTGATGAT+TGG | - | chr2_1:25999836-25999855 | Msa0202970:intron | 50.0% | |
| GGTCGATCTCCAATCATCAG+AGG | + | chr2_1:25999848-25999867 | None:intergenic | 50.0% | |
| GCAGTGTGATAGATGCAACC+AGG | - | chr2_1:25999907-25999926 | Msa0202970:intron | 50.0% | |
| CCTGGATTTGAGCTTGGAGA+AGG | + | chr2_1:25999958-25999977 | None:intergenic | 50.0% | |
| CCTTCTCCAAGCTCAAATCC+AGG | - | chr2_1:25999955-25999974 | Msa0202970:CDS | 50.0% | |
| GTAACTGCTTTCCAGGAAGC+AGG | - | chr2_1:25999998-26000017 | Msa0202970:CDS | 50.0% | |
| AACTGCTTTCCAGGAAGCAG+GGG | - | chr2_1:26000000-26000019 | Msa0202970:CDS | 50.0% | |
| GAAGCAGGGGAGGAGATTAT+GGG | - | chr2_1:26000013-26000032 | Msa0202970:CDS | 50.0% | |
| AAGCAGGGGAGGAGATTATG+GGG | - | chr2_1:26000014-26000033 | Msa0202970:CDS | 50.0% | |
| GTGGTTGTTGCGGTTGTGTG+TGG | + | chr2_1:25996138-25996157 | None:intergenic | 55.0% | |
| ACCGCAACAACCACCACCAA+TGG | - | chr2_1:25996144-25996163 | Msa0202970:CDS | 55.0% | |
| !! | GCCATTGGTGGTGGTTGTTG+CGG | + | chr2_1:25996148-25996167 | None:intergenic | 55.0% |
| GCAACAACCACCACCAATGG+CGG | - | chr2_1:25996147-25996166 | Msa0202970:CDS | 55.0% | |
| GCGGTGAGATTTACCGCCAT+TGG | + | chr2_1:25996163-25996182 | None:intergenic | 55.0% | |
| GCTATTCCGGCGATAATCGC+CGG | - | chr2_1:25996187-25996206 | Msa0202970:CDS | 55.0% | |
| GTGATGAGACGAAACGGCGT+CGG | + | chr2_1:25996308-25996327 | None:intergenic | 55.0% | |
| !! | GACTCGGTCGTTGAGTTGAG+CGG | + | chr2_1:25996341-25996360 | None:intergenic | 55.0% |
| !! | AGCGGAGGAGGTTGGTATTG+AGG | + | chr2_1:25998771-25998790 | None:intergenic | 55.0% |
| CGACCTTTGTAAAGCGGAGG+AGG | + | chr2_1:25998873-25998892 | None:intergenic | 55.0% | |
| CCACGACCTTTGTAAAGCGG+AGG | + | chr2_1:25998876-25998895 | None:intergenic | 55.0% | |
| CCTCCGCTTTACAAAGGTCG+TGG | - | chr2_1:25998873-25998892 | Msa0202970:intron | 55.0% | |
| ATGGCCCACCTACCCTGATA+GGG | + | chr2_1:25998954-25998973 | None:intergenic | 55.0% | |
| TAGGTGGGCCATCAAGGCAA+GGG | - | chr2_1:25998962-25998981 | Msa0202970:intron | 55.0% | |
| CGCCGCTATAACAATGCTCG+TGG | - | chr2_1:25999005-25999024 | Msa0202970:intron | 55.0% | |
| GGTTGAGCTTTGCCCAGATG+AGG | - | chr2_1:25999235-25999254 | Msa0202970:intron | 55.0% | |
| GAGCTTTGCCCAGATGAGGA+TGG | - | chr2_1:25999239-25999258 | Msa0202970:intron | 55.0% | |
| GTCTGAGCCTCAGGGAAATC+TGG | + | chr2_1:25999614-25999633 | None:intergenic | 55.0% | |
| TAATCTCCTCCCCTGCTTCC+TGG | + | chr2_1:26000012-26000031 | None:intergenic | 55.0% | |
| GGAAGCAGGGGAGGAGATTA+TGG | - | chr2_1:26000012-26000031 | Msa0202970:CDS | 55.0% | |
| ! | CGGCGTCGGAGAGAAGAAGA+CGG | + | chr2_1:25996294-25996313 | None:intergenic | 60.0% |
| !! | AGCGGAGGAGGTTGGTATGG+AGG | + | chr2_1:25998861-25998880 | None:intergenic | 60.0% |
| GATGGCCCACCTACCCTGAT+AGG | + | chr2_1:25998955-25998974 | None:intergenic | 60.0% | |
| TCAGGGTAGGTGGGCCATCA+AGG | - | chr2_1:25998956-25998975 | Msa0202970:intron | 60.0% | |
| GTAGGTGGGCCATCAAGGCA+AGG | - | chr2_1:25998961-25998980 | Msa0202970:intron | 60.0% | |
| TGCTTTCCAGGAAGCAGGGG+AGG | - | chr2_1:26000003-26000022 | Msa0202970:CDS | 60.0% | |
| ACGTCGCCGGCGATTATCGC+CGG | + | chr2_1:25996196-25996215 | None:intergenic | 65.0% | |
| !! | CGGTTTGGCGTTGACGTCGC+CGG | + | chr2_1:25996209-25996228 | None:intergenic | 65.0% |
| GGCGTTCAGGCAAGCCAGAC+TGG | - | chr2_1:25999762-25999781 | Msa0202970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 25996115 | 26000270 | 25996115 | ID=Msa0202970;Name=Msa0202970 |
| chr2_1 | mRNA | 25996115 | 26000270 | 25996115 | ID=Msa0202970-mRNA-1;Parent=Msa0202970;Name=Msa0202970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=48|1|0.5|1|1|1|2|0|658 |
| chr2_1 | exon | 25996115 | 25997819 | 25996115 | ID=Msa0202970-mRNA-1:exon:9836;Parent=Msa0202970-mRNA-1 |
| chr2_1 | exon | 25999951 | 26000270 | 25999951 | ID=Msa0202970-mRNA-1:exon:9835;Parent=Msa0202970-mRNA-1 |
| chr2_1 | five_prime_UTR | 26000223 | 26000270 | 26000223 | ID=Msa0202970-mRNA-1:five_prime_utr;Parent=Msa0202970-mRNA-1 |
| chr2_1 | CDS | 25999951 | 26000222 | 25999951 | ID=Msa0202970-mRNA-1:cds;Parent=Msa0202970-mRNA-1 |
| chr2_1 | CDS | 25996115 | 25997819 | 25996115 | ID=Msa0202970-mRNA-1:cds;Parent=Msa0202970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
