Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246010 | XP_013463513.1 | 93.313 | 658 | 13 | 1 | 1 | 658 | 1 | 627 | 0.0 | 1259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246010 | sp|Q9SKI4|RFA1A_ARATH | 67.023 | 655 | 200 | 4 | 1 | 654 | 1 | 640 | 0.0 | 903 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246010 | A0A072V862 | 93.313 | 658 | 13 | 1 | 1 | 658 | 1 | 627 | 0.0 | 1259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202970 | Msa0246010 | 0.899425 | 2.007842e-77 | -8.615850e-47 |
| Msa0246010 | Msa0284400 | 0.810893 | 9.192435e-51 | -8.615850e-47 |
| Msa0246010 | Msa0908170 | 0.800606 | 1.331988e-48 | -8.615850e-47 |
| Msa0246010 | Msa0959010 | 0.805447 | 1.329319e-49 | -8.615850e-47 |
| Msa0246010 | Msa1390230 | 0.805837 | 1.100709e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246010 | MtrunA17_Chr2g0300361 | 93.313 | 658 | 13 | 1 | 1 | 658 | 1 | 627 | 0.0 | 1259 |
| Msa0246010 | MtrunA17_Chr3g0096381 | 72.163 | 467 | 115 | 3 | 203 | 657 | 121 | 584 | 0.0 | 701 |
| Msa0246010 | MtrunA17_Chr3g0096381 | 61.983 | 121 | 46 | 0 | 1 | 121 | 1 | 121 | 4.63e-39 | 152 |
| Msa0246010 | MtrunA17_Chr5g0409381 | 51.114 | 718 | 286 | 15 | 1 | 658 | 1 | 713 | 0.0 | 659 |
| Msa0246010 | MtrunA17_Chr4g0061491 | 36.207 | 464 | 274 | 7 | 206 | 655 | 159 | 614 | 1.59e-93 | 301 |
| Msa0246010 | MtrunA17_Chr5g0409361 | 35.252 | 139 | 83 | 1 | 1 | 139 | 1 | 132 | 1.11e-19 | 90.9 |
| Msa0246010 | MtrunA17_Chr5g0409361 | 37.500 | 112 | 69 | 1 | 1 | 111 | 146 | 257 | 6.08e-15 | 76.6 |
| Msa0246010 | MtrunA17_Chr5g0409371 | 38.947 | 95 | 58 | 0 | 1 | 95 | 1 | 95 | 7.54e-15 | 70.5 |
| Msa0246010 | MtrunA17_Chr6g0469931 | 28.708 | 209 | 135 | 8 | 254 | 452 | 42 | 246 | 2.01e-14 | 76.6 |
| Msa0246010 | MtrunA17_Chr4g0061501 | 30.822 | 146 | 76 | 5 | 383 | 505 | 18 | 161 | 4.63e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246010 | AT2G06510.1 | 67.023 | 655 | 200 | 4 | 1 | 654 | 1 | 640 | 0.0 | 903 |
| Msa0246010 | AT2G06510.2 | 66.772 | 632 | 194 | 4 | 24 | 654 | 1 | 617 | 0.0 | 874 |
| Msa0246010 | AT4G19130.2 | 49.853 | 682 | 305 | 8 | 1 | 656 | 2 | 672 | 0.0 | 682 |
| Msa0246010 | AT4G19130.1 | 49.853 | 682 | 305 | 8 | 1 | 656 | 1 | 671 | 0.0 | 682 |
| Msa0246010 | AT5G45400.1 | 61.684 | 475 | 177 | 4 | 184 | 656 | 270 | 741 | 0.0 | 643 |
| Msa0246010 | AT5G45400.1 | 33.758 | 157 | 97 | 2 | 1 | 150 | 1 | 157 | 5.57e-19 | 92.0 |
| Msa0246010 | AT5G08020.1 | 32.584 | 623 | 346 | 14 | 42 | 654 | 41 | 599 | 2.59e-102 | 324 |
| Msa0246010 | AT5G61000.1 | 31.065 | 676 | 389 | 17 | 1 | 653 | 1 | 622 | 6.53e-96 | 308 |
| Msa0246010 | AT1G52950.1 | 22.045 | 440 | 294 | 14 | 215 | 629 | 10 | 425 | 7.45e-16 | 81.6 |
Find 191 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTATTATTAATATTTC+TGG | 0.129088 | 2_2:+26204506 | None:intergenic |
| ACCAGCCTTTACTGCTAAAA+TGG | 0.144775 | 2_2:+26203675 | None:intergenic |
| CAGAAATATTAATAATAATT+TGG | 0.171665 | 2_2:-26204505 | Msa0246010:CDS |
| TGCAGTAACCCTTGCCTTGA+TGG | 0.192465 | 2_2:+26204230 | None:intergenic |
| GGAAGCAGGGGAGGAGATTA+TGG | 0.234809 | 2_2:-26203188 | Msa0246010:CDS |
| GATTTCACAATCAGGTATTA+TGG | 0.235355 | 2_2:+26204608 | None:intergenic |
| ATGCTATCCTTGATGTTATT+GGG | 0.237693 | 2_2:-26203876 | Msa0246010:CDS |
| GTAGTAATGGGCAGAATTTC+AGG | 0.238903 | 2_2:-26204377 | Msa0246010:CDS |
| GTAGTAATGGGCAGAATTTC+AGG | 0.238903 | 2_2:-26204467 | Msa0246010:CDS |
| AATGCTATCCTTGATGTTAT+TGG | 0.260217 | 2_2:-26203877 | Msa0246010:CDS |
| AGCTGCTTTAAATCCCTATC+AGG | 0.291739 | 2_2:-26204262 | Msa0246010:CDS |
| TTCCTTGTACAGGATTATTA+TGG | 0.291986 | 2_2:-26204646 | Msa0246010:intron |
| TGCTTCTCTATCCATTTCTA+AGG | 0.293301 | 2_2:-26203530 | Msa0246010:CDS |
| TTGAATCTAAAGGACAATTC+TGG | 0.293961 | 2_2:-26203784 | Msa0246010:CDS |
| AACTTGGGTAACTGCTTTCC+AGG | 0.306558 | 2_2:-26203209 | Msa0246010:CDS |
| TAATCTCCTCCCCTGCTTCC+TGG | 0.309445 | 2_2:+26203191 | None:intergenic |
| GAGTGTTGAGCTAACACTTT+GGG | 0.310178 | 2_2:-26203758 | Msa0246010:CDS |
| GTCTGAGCCTCAGGGAAATC+TGG | 0.314113 | 2_2:+26203589 | None:intergenic |
| GTGTGTGGAGAAAGAAATTT+TGG | 0.321651 | 2_2:+26207082 | None:intergenic |
| GTTCTTAAGGTCTGAGCCTC+AGG | 0.330109 | 2_2:+26203580 | None:intergenic |
| TTGATCAAACCAGGTTCTTA+AGG | 0.331128 | 2_2:+26203567 | None:intergenic |
| GATGGCCCACCTACCCTGAT+AGG | 0.333085 | 2_2:+26204248 | None:intergenic |
| GCCCTCATTGTTATCCAGTC+TGG | 0.338147 | 2_2:+26203424 | None:intergenic |
| CAGGAGGATGATGAGAAGTT+TGG | 0.346761 | 2_2:-26203127 | Msa0246010:CDS |
| CAATCACTGCCTACGGAACT+TGG | 0.351957 | 2_2:+26202949 | None:intergenic |
| TCAGGCAATGCTTTCTGAAC+TGG | 0.362621 | 2_2:+26204549 | None:intergenic |
| GGTATAGAACCATCCTCATC+TGG | 0.367686 | 2_2:+26203952 | None:intergenic |
| CTCAAAATGCTGGTAGTAAT+GGG | 0.368189 | 2_2:-26204479 | Msa0246010:CDS |
| CTCAATGACCGAGTCAATAC+TGG | 0.368529 | 2_2:-26206856 | Msa0246010:CDS |
| TCAATCATTTGAAGAATGAA+TGG | 0.372621 | 2_2:-26204014 | Msa0246010:CDS |
| TGCCCATTACTACCAGCATT+TGG | 0.378317 | 2_2:+26204387 | None:intergenic |
| GCTCAAATCCAGGATCATTC+AGG | 0.380015 | 2_2:-26203235 | Msa0246010:CDS |
| TCTCACCGCAAACGCTATTC+CGG | 0.381154 | 2_2:-26207028 | Msa0246010:CDS |
| ACAGCTTGCCCTCTGATGAT+TGG | 0.387057 | 2_2:-26203364 | Msa0246010:CDS |
| GAACCAGCCACAGTGTTATC+AGG | 0.387320 | 2_2:+26204531 | None:intergenic |
| CAAATTAAAGATGAAGATCT+AGG | 0.387556 | 2_2:-26203460 | Msa0246010:CDS |
| GGGCAAGCTGTGTAACAAAA+TGG | 0.387851 | 2_2:+26203376 | None:intergenic |
| TTTGGGGTGAATTCTGCAAC+AGG | 0.396738 | 2_2:-26203741 | Msa0246010:CDS |
| GATGAAGATCTAGGGCGTTC+AGG | 0.398577 | 2_2:-26203451 | Msa0246010:CDS |
| GGTGAAGATTACAGTAGTTA+AGG | 0.400983 | 2_2:-26203023 | Msa0246010:CDS |
| ATGAGTGATGTCCTTAGAAA+TGG | 0.402311 | 2_2:+26203519 | None:intergenic |
| CTCCAAATGCTGGTAGTAAT+GGG | 0.405201 | 2_2:-26204389 | Msa0246010:CDS |
| CCAGCCTTTACTGCTAAAAT+GGG | 0.406397 | 2_2:+26203676 | None:intergenic |
| GAACCTGGTTTGATCAAGTT+GGG | 0.410401 | 2_2:-26203561 | Msa0246010:CDS |
| AGCGGAGGAGGTTGGTATTG+AGG | 0.411724 | 2_2:+26204432 | None:intergenic |
| ACCGCAACAACCACCACCAA+TGG | 0.413608 | 2_2:-26207058 | Msa0246010:exon |
| TCTGAATCCACAAATGACTT+TGG | 0.414308 | 2_2:+26204576 | None:intergenic |
| ATACCTGATTGTGAAATCAT+TGG | 0.415649 | 2_2:-26204603 | Msa0246010:CDS |
| CTTCAAGAGATGGTGGATGC+TGG | 0.419540 | 2_2:-26203706 | Msa0246010:CDS |
| AGAACCTGGTTTGATCAAGT+TGG | 0.422430 | 2_2:-26203562 | Msa0246010:CDS |
| CAATCATTTGAAGAATGAAT+GGG | 0.424161 | 2_2:-26204013 | Msa0246010:CDS |
| TTCCCAATGATTTCACAATC+AGG | 0.429166 | 2_2:+26204600 | None:intergenic |
| TGGGAATCCAAAGTCATTTG+TGG | 0.432048 | 2_2:-26204583 | Msa0246010:CDS |
| GGCGTTCAGGCAAGCCAGAC+TGG | 0.443599 | 2_2:-26203438 | Msa0246010:CDS |
| TCTTCAATGAGTTTGTGTTT+AGG | 0.444396 | 2_2:-26203084 | Msa0246010:CDS |
| CGAAGTCAGGAGACACAAAA+TGG | 0.444863 | 2_2:-26203315 | Msa0246010:CDS |
| AGGATCATTCAGGATTAACT+TGG | 0.448406 | 2_2:-26203225 | Msa0246010:CDS |
| GAAGCAGGGGAGGAGATTAT+GGG | 0.448431 | 2_2:-26203187 | Msa0246010:CDS |
| ATTCCGATGGAGGTGAAATA+CGG | 0.449887 | 2_2:-26204140 | Msa0246010:CDS |
| TTCAAGAGATGGTGGATGCT+GGG | 0.453587 | 2_2:-26203705 | Msa0246010:CDS |
| TTTGATCTCCTTGATTCCGA+TGG | 0.453893 | 2_2:-26204153 | Msa0246010:CDS |
| GCTCCAAATGCTGGTAGTAA+TGG | 0.459212 | 2_2:-26204390 | Msa0246010:CDS |
| GAATTCAGTGGAAAGTCTAT+AGG | 0.459727 | 2_2:-26203643 | Msa0246010:CDS |
| TTTAGCAGTAAAGGCTGGTA+AGG | 0.460163 | 2_2:-26203671 | Msa0246010:CDS |
| TACCTGATTGTGAAATCATT+GGG | 0.460436 | 2_2:-26204602 | Msa0246010:CDS |
| TGATTGAAATTCTTCTGTGC+AGG | 0.460517 | 2_2:+26204030 | None:intergenic |
| AATAAGAAAGTGACGAAGTC+AGG | 0.461922 | 2_2:-26203328 | Msa0246010:CDS |
| GTAACTGCTTTCCAGGAAGC+AGG | 0.462729 | 2_2:-26203202 | Msa0246010:CDS |
| TAAAGCGGAGGAGGTTGGTA+TGG | 0.464313 | 2_2:+26204339 | None:intergenic |
| TACAGTAGTTAAGGCAGATA+AGG | 0.467853 | 2_2:-26203014 | Msa0246010:CDS |
| GCGGTGAGATTCACCGCCAT+TGG | 0.468725 | 2_2:+26207042 | None:intergenic |
| GAATGAATGGGAAATTATGC+TGG | 0.470378 | 2_2:-26204001 | Msa0246010:CDS |
| CCGTTTCTATGAAGCAATTG+AGG | 0.474581 | 2_2:-26204091 | Msa0246010:CDS |
| AAGGCAAGGGTTACTGCAAA+AGG | 0.476738 | 2_2:-26204225 | Msa0246010:CDS |
| GTTCCCATCGTAAGGAAGAA+TGG | 0.477384 | 2_2:-26203829 | Msa0246010:CDS |
| GCTCAAAATGCTGGTAGTAA+TGG | 0.484784 | 2_2:-26204480 | Msa0246010:CDS |
| TTCGTCACTTTCTTATTGCA+CGG | 0.485857 | 2_2:+26203334 | None:intergenic |
| TGTTGTAAAGCGGAGGAGGT+TGG | 0.489573 | 2_2:+26204424 | None:intergenic |
| AATGATCCTGGATTTGAGCT+TGG | 0.492318 | 2_2:+26203239 | None:intergenic |
| AAGTTAATCCTGAATGATCC+TGG | 0.493959 | 2_2:+26203227 | None:intergenic |
| TAGGGATTTAAAGCAGCTAT+AGG | 0.496621 | 2_2:+26204267 | None:intergenic |
| TTTCACCTCCATCGGAATCA+AGG | 0.500395 | 2_2:+26204145 | None:intergenic |
| TATGCTGGATTTAAATTCAA+CGG | 0.500855 | 2_2:-26203986 | Msa0246010:CDS |
| TACCCGTATTTCACCTCCAT+CGG | 0.501159 | 2_2:+26204137 | None:intergenic |
| GCTATAGGTATTACACGTGC+TGG | 0.503122 | 2_2:+26204282 | None:intergenic |
| GCTATTCCGGCGATAATCGC+CGG | 0.503326 | 2_2:-26207015 | Msa0246010:CDS |
| TAGATGCAACCAGGAGTTTG+AGG | 0.505007 | 2_2:-26203284 | Msa0246010:CDS |
| AATTTGGCTGCTCCAAATGC+TGG | 0.507899 | 2_2:-26204399 | Msa0246010:CDS |
| TGCTATCCTTGATGTTATTG+GGG | 0.509422 | 2_2:-26203875 | Msa0246010:CDS |
| AGCGGAGGAGGTTGGTATGG+AGG | 0.511425 | 2_2:+26204342 | None:intergenic |
| GATTATTATGGTGCTTAACA+TGG | 0.514700 | 2_2:-26204634 | Msa0246010:CDS |
| ATCCTTCAGTTCCCATCGTA+AGG | 0.516057 | 2_2:-26203837 | Msa0246010:CDS |
| ACGTCGCCGGCGATTATCGC+CGG | 0.516823 | 2_2:+26207009 | None:intergenic |
| TTCTATGAAGCAATTGAGGT+TGG | 0.517168 | 2_2:-26204087 | Msa0246010:CDS |
| ATTCCATTCTTCCTTACGAT+GGG | 0.519102 | 2_2:+26203826 | None:intergenic |
| ACAGTCTCAATGTCACTGAT+AGG | 0.519707 | 2_2:+26203907 | None:intergenic |
| GATCTCCTTGATTCCGATGG+AGG | 0.519739 | 2_2:-26204150 | Msa0246010:CDS |
| CGGTTTGGCGTCGACGTCGC+CGG | 0.521923 | 2_2:+26206996 | None:intergenic |
| AGATTCACCGCCATTGGTGG+TGG | 0.522851 | 2_2:+26207048 | None:intergenic |
| TATAACAATGCTCGTGGAGA+TGG | 0.523700 | 2_2:-26204189 | Msa0246010:CDS |
| CGACCTTTGTAAAGCGGAGG+AGG | 0.525294 | 2_2:+26204330 | None:intergenic |
| TCAGGGTAGGTGGGCCATCA+AGG | 0.528250 | 2_2:-26204244 | Msa0246010:CDS |
| CTGAAGGAGAATTGTTGTCT+AGG | 0.528586 | 2_2:+26203931 | None:intergenic |
| GTGGTTGTTGCGGTTGTGTG+TGG | 0.529612 | 2_2:+26207067 | None:intergenic |
| AATTTGGCTGCTCAAAATGC+TGG | 0.530811 | 2_2:-26204489 | Msa0246010:CDS |
| CATTCCATTCTTCCTTACGA+TGG | 0.533999 | 2_2:+26203825 | None:intergenic |
| GAGCTTTGCCCAGATGAGGA+TGG | 0.534821 | 2_2:-26203961 | Msa0246010:CDS |
| CCTGGATTTGAGCTTGGAGA+AGG | 0.534963 | 2_2:+26203245 | None:intergenic |
| AATCACATTCCTCAAACTCC+TGG | 0.536282 | 2_2:+26203275 | None:intergenic |
| ATTTCTAAGGACATCACTCA+TGG | 0.537700 | 2_2:-26203517 | Msa0246010:CDS |
| TATCGCCGGAATAGCGTTTG+CGG | 0.537944 | 2_2:+26207023 | None:intergenic |
| GAGAACTTGAAGTAACGGTT+TGG | 0.539039 | 2_2:+26206981 | None:intergenic |
| GTATGTGTTGAAGTATGAAC+AGG | 0.543799 | 2_2:-26203146 | Msa0246010:CDS |
| ATGGCCCACCTACCCTGATA+GGG | 0.544473 | 2_2:+26204249 | None:intergenic |
| AAAGTTTACTTGATATCGAA+AGG | 0.544592 | 2_2:-26204063 | Msa0246010:CDS |
| TAAATCCCTATCAGGGTAGG+TGG | 0.547460 | 2_2:-26204254 | Msa0246010:CDS |
| GTAGGTGGGCCATCAAGGCA+AGG | 0.549490 | 2_2:-26204239 | Msa0246010:CDS |
| TTCCTTACGATGGGAACTGA+AGG | 0.549709 | 2_2:+26203835 | None:intergenic |
| GCCATTGGTGGTGGTTGTTG+CGG | 0.550602 | 2_2:+26207057 | None:intergenic |
| TGGTATTGAGGTTGAACTGT+TGG | 0.550725 | 2_2:+26204444 | None:intergenic |
| TTTCCCAACTTGATCAAACC+AGG | 0.553038 | 2_2:+26203558 | None:intergenic |
| AGGCTCAGACCTTAAGAACC+TGG | 0.553217 | 2_2:-26203576 | Msa0246010:CDS |
| CTTTGTAAAGCGGAGGAGGT+TGG | 0.553943 | 2_2:+26204334 | None:intergenic |
| AGAGTGTTGAGCTAACACTT+TGG | 0.559856 | 2_2:-26203759 | Msa0246010:CDS |
| TGGAATGGAAACACTGAGAA+GGG | 0.560059 | 2_2:-26203809 | Msa0246010:CDS |
| CGCCGCTATAACAATGCTCG+TGG | 0.561907 | 2_2:-26204195 | Msa0246010:CDS |
| CCTTCTCCAAGCTCAAATCC+AGG | 0.562294 | 2_2:-26203245 | Msa0246010:CDS |
| GTGAGATTCACCGCCATTGG+TGG | 0.562315 | 2_2:+26207045 | None:intergenic |
| CCTCAATTGCTTCATAGAAA+CGG | 0.565250 | 2_2:+26204091 | None:intergenic |
| CATCGTAAGGAAGAATGGAA+TGG | 0.565891 | 2_2:-26203824 | Msa0246010:CDS |
| ATGGAATGGAAACACTGAGA+AGG | 0.567325 | 2_2:-26203810 | Msa0246010:CDS |
| TGCTTTCCAGGAAGCAGGGG+AGG | 0.568330 | 2_2:-26203197 | Msa0246010:CDS |
| CCTCCGCTTTACAAAGGTCG+TGG | 0.571787 | 2_2:-26204327 | Msa0246010:CDS |
| TTGCCTGATAACACTGTGGC+TGG | 0.572437 | 2_2:-26204534 | Msa0246010:CDS |
| TAACTGCTTTCCAGGAAGCA+GGG | 0.573726 | 2_2:-26203201 | Msa0246010:CDS |
| TCAAGAGATGGTGGATGCTG+GGG | 0.574359 | 2_2:-26203704 | Msa0246010:CDS |
| AAATTAAAGATGAAGATCTA+GGG | 0.575955 | 2_2:-26203459 | Msa0246010:CDS |
| GGTTGAGCTTTGCCCAGATG+AGG | 0.577862 | 2_2:-26203965 | Msa0246010:CDS |
| GCTGCTTTAAATCCCTATCA+GGG | 0.580315 | 2_2:-26204261 | Msa0246010:CDS |
| TGGTATGGAGGTTGAACTGT+TGG | 0.582038 | 2_2:+26204354 | None:intergenic |
| ATGTCGAGAACTTGAAGTAA+CGG | 0.582274 | 2_2:+26206976 | None:intergenic |
| CAAGCTACAATCACTGCCTA+CGG | 0.586389 | 2_2:+26202942 | None:intergenic |
| GTATAGAACCATCCTCATCT+GGG | 0.586999 | 2_2:+26203953 | None:intergenic |
| AATGTCACTGATAGGTCTGA+AGG | 0.587612 | 2_2:+26203915 | None:intergenic |
| ATTATATAATGACGAACAGA+AGG | 0.587920 | 2_2:-26203044 | Msa0246010:CDS |
| TTTCTAAGGACATCACTCAT+GGG | 0.588441 | 2_2:-26203516 | Msa0246010:CDS |
| AACTGCTTTCCAGGAAGCAG+GGG | 0.589254 | 2_2:-26203200 | Msa0246010:CDS |
| ATCGGTCCTCATGAATGATA+CGG | 0.591847 | 2_2:+26203399 | None:intergenic |
| AGGACAAAAGCTTCAAGAGA+TGG | 0.592318 | 2_2:-26203716 | Msa0246010:CDS |
| TTCCGATGGAGGTGAAATAC+GGG | 0.595001 | 2_2:-26204139 | Msa0246010:CDS |
| CATAGCGTGATGTGACGAAA+CGG | 0.595242 | 2_2:+26206891 | None:intergenic |
| GAAGAAGACGGTAACGCTGT+TGG | 0.595499 | 2_2:+26206923 | None:intergenic |
| GGTAAGGTTAATGAATTCAG+TGG | 0.596983 | 2_2:-26203655 | Msa0246010:CDS |
| ACAAAAGCTTCAAGAGATGG+TGG | 0.598927 | 2_2:-26203713 | Msa0246010:CDS |
| TGAATTATTCTGCAGAGAGT+AGG | 0.600929 | 2_2:-26202991 | Msa0246010:CDS |
| CTCCACGAGCATTGTTATAG+CGG | 0.600995 | 2_2:+26204193 | None:intergenic |
| TAGGTGGGCCATCAAGGCAA+GGG | 0.604948 | 2_2:-26204238 | Msa0246010:CDS |
| TCACAACCCCAATAACATCA+AGG | 0.606648 | 2_2:+26203869 | None:intergenic |
| CTTTAAATCCCTATCAGGGT+AGG | 0.611287 | 2_2:-26204257 | Msa0246010:CDS |
| TAATACTTGCGATTCTGAAG+CGG | 0.611376 | 2_2:+26206784 | None:intergenic |
| GTCGATCTCCAATCATCAGA+GGG | 0.611616 | 2_2:+26203356 | None:intergenic |
| AGCTGTGTAACAAAATGGAT+CGG | 0.612353 | 2_2:+26203381 | None:intergenic |
| GGATCATTCAGGATTAACTT+GGG | 0.613069 | 2_2:-26203224 | Msa0246010:CDS |
| TTCTTAAGGTCTGAGCCTCA+GGG | 0.623006 | 2_2:+26203581 | None:intergenic |
| GCAACAACCACCACCAATGG+CGG | 0.625257 | 2_2:-26207055 | Msa0246010:exon |
| GTTTAGGCTGAAAATCAAAG+AGG | 0.625551 | 2_2:-26203068 | Msa0246010:CDS |
| GGTGAATTCTGCAACAGGGA+AGG | 0.626099 | 2_2:-26203736 | Msa0246010:CDS |
| TTCTAAGGACATCACTCATG+GGG | 0.629562 | 2_2:-26203515 | Msa0246010:CDS |
| GCCAGACTGGATAACAATGA+GGG | 0.637901 | 2_2:-26203425 | Msa0246010:CDS |
| GGTCGATCTCCAATCATCAG+AGG | 0.638969 | 2_2:+26203355 | None:intergenic |
| AAATCCCTATCAGGGTAGGT+GGG | 0.640512 | 2_2:-26204253 | Msa0246010:CDS |
| CAACCTCCTCCGCTTTACAA+AGG | 0.641625 | 2_2:-26204333 | Msa0246010:CDS |
| AGCCAGACTGGATAACAATG+AGG | 0.656016 | 2_2:-26203426 | Msa0246010:CDS |
| CAGCCTTTACTGCTAAAATG+GGG | 0.656745 | 2_2:+26203677 | None:intergenic |
| TAACTCGTCCAGTATTGACT+CGG | 0.656818 | 2_2:+26206848 | None:intergenic |
| GCACCACGACCTTTGTAAAG+CGG | 0.657064 | 2_2:+26204324 | None:intergenic |
| GTAATCGAGAAGCTGAACGA+TGG | 0.661747 | 2_2:+26206816 | None:intergenic |
| CCACGACCTTTGTAAAGCGG+AGG | 0.662907 | 2_2:+26204327 | None:intergenic |
| GCAGTGTGATAGATGCAACC+AGG | 0.664374 | 2_2:-26203293 | Msa0246010:CDS |
| GTGATGTGACGAAACGGCGT+CGG | 0.668120 | 2_2:+26206897 | None:intergenic |
| GACTCGGTCATTGAGTTGAG+CGG | 0.672963 | 2_2:+26206864 | None:intergenic |
| AATACTGGACGAGTTAAGCA+AGG | 0.673990 | 2_2:-26206841 | Msa0246010:CDS |
| TGTGTTGAAGTATGAACAGG+AGG | 0.677244 | 2_2:-26203143 | Msa0246010:CDS |
| GGGCAACCGTATCATTCATG+AGG | 0.684770 | 2_2:-26203405 | Msa0246010:CDS |
| AGTGTTGAGCTAACACTTTG+GGG | 0.692814 | 2_2:-26203757 | Msa0246010:CDS |
| CATAAATCCAGATTTCCCTG+AGG | 0.709312 | 2_2:-26203596 | Msa0246010:CDS |
| TTGGGGTGAATTCTGCAACA+GGG | 0.712179 | 2_2:-26203740 | Msa0246010:CDS |
| CGGCGTCGGAGAGAAGAAGA+CGG | 0.718695 | 2_2:+26206911 | None:intergenic |
| AAGCAGGGGAGGAGATTATG+GGG | 0.738154 | 2_2:-26203186 | Msa0246010:CDS |
| TCTAAGGACATCACTCATGG+GGG | 0.753824 | 2_2:-26203514 | Msa0246010:CDS |
| AGCATTGCCTGATAACACTG+TGG | 0.782811 | 2_2:-26204538 | Msa0246010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATTATTATTAATATTTC+TGG | + | chr2_2:26205536-26205555 | None:intergenic | 10.0% |
| !! | CAGAAATATTAATAATAATT+TGG | - | chr2_2:26205534-26205553 | Msa0246010:intron | 10.0% |
| !! | TTAAGTGATTAATTGATTAT+CGG | - | chr2_2:26203319-26203338 | Msa0246010:CDS | 15.0% |
| !! | TAAGAATTAGTGTATGAATT+AGG | - | chr2_2:26203434-26203453 | Msa0246010:CDS | 20.0% |
| !!! | TGTGATTTTCACTTTTTATT+AGG | - | chr2_2:26203533-26203552 | Msa0246010:CDS | 20.0% |
| !!! | AAGTTGTATTTCTAAGAATT+AGG | - | chr2_2:26203749-26203768 | Msa0246010:CDS | 20.0% |
| !!! | TATTTCTAAGAATTAGGATA+TGG | - | chr2_2:26203755-26203774 | Msa0246010:CDS | 20.0% |
| !!! | TTATGTACATTTCACTTTTT+AGG | - | chr2_2:26203856-26203875 | Msa0246010:CDS | 20.0% |
| !! | TAATTGTTAGTGTAAGAATT+AGG | - | chr2_2:26204481-26204500 | Msa0246010:CDS | 20.0% |
| !!! | TGTATCATCAATAACATTTT+AGG | + | chr2_2:26204639-26204658 | None:intergenic | 20.0% |
| !!! | AACATTTTAGGTTGAAAATT+TGG | + | chr2_2:26204627-26204646 | None:intergenic | 20.0% |
| !!! | ATTTTCAACCTAAAATGTTA+TGG | - | chr2_2:26204628-26204647 | Msa0246010:CDS | 20.0% |
| !!! | AATGTTTTAGGTTGAAATTT+TGG | + | chr2_2:26205049-26205068 | None:intergenic | 20.0% |
| !! | TACATAAGTGTTATATTCTT+TGG | - | chr2_2:26205092-26205111 | Msa0246010:intron | 20.0% |
| !! | TGTATCATCTATAATGTTTA+GGG | + | chr2_2:26205264-26205283 | None:intergenic | 20.0% |
| !! | ATGTATCATCTATAATGTTT+AGG | + | chr2_2:26205265-26205284 | None:intergenic | 20.0% |
| !! | AAATTAAAGATGAAGATCTA+GGG | - | chr2_2:26206580-26206599 | Msa0246010:intron | 20.0% |
| ! | AAGTTGCATTTGTAAGAATT+AGG | - | chr2_2:26203586-26203605 | Msa0246010:CDS | 25.0% |
| ! | CATTTGTAAGAATTAGGTTA+TGG | - | chr2_2:26203592-26203611 | Msa0246010:CDS | 25.0% |
| ! | AATATCACATTTCATCAATG+AGG | + | chr2_2:26203620-26203639 | None:intergenic | 25.0% |
| !!! | TTATGTGCATTTCACTTTTT+AGG | - | chr2_2:26203696-26203715 | Msa0246010:CDS | 25.0% |
| !! | CAAATTTTGAACTAAAGCAA+TGG | + | chr2_2:26204427-26204446 | None:intergenic | 25.0% |
| ! | TTAGTGATAGTATTAGGATA+TGG | - | chr2_2:26204709-26204728 | Msa0246010:intron | 25.0% |
| !! | GTGATAGTTAAATTACGTTT+TGG | - | chr2_2:26204749-26204768 | Msa0246010:intron | 25.0% |
| !! | ATAATGTTTAGGGTGAAAAT+TGG | + | chr2_2:26205254-26205273 | None:intergenic | 25.0% |
| ! | AAAGTTTACTTGATATCGAA+AGG | - | chr2_2:26205976-26205995 | Msa0246010:intron | 25.0% |
| ! | TCAATCATTTGAAGAATGAA+TGG | - | chr2_2:26206025-26206044 | Msa0246010:intron | 25.0% |
| ! | CAATCATTTGAAGAATGAAT+GGG | - | chr2_2:26206026-26206045 | Msa0246010:intron | 25.0% |
| ! | TATGCTGGATTTAAATTCAA+CGG | - | chr2_2:26206053-26206072 | Msa0246010:intron | 25.0% |
| ! | CAAATTAAAGATGAAGATCT+AGG | - | chr2_2:26206579-26206598 | Msa0246010:intron | 25.0% |
| ! | ATTATATAATGACGAACAGA+AGG | - | chr2_2:26206995-26207014 | Msa0246010:CDS | 25.0% |
| !! | ATACAACTTCTAGAACGATT+AGG | + | chr2_2:26203738-26203757 | None:intergenic | 30.0% |
| GTTATCACATTTCATCAACA+AGG | + | chr2_2:26203783-26203802 | None:intergenic | 30.0% | |
| ACATAAAACGTTCAGATAGA+TGG | - | chr2_2:26203894-26203913 | Msa0246010:CDS | 30.0% | |
| ACTATAACACTTTATTGTGG+CGG | + | chr2_2:26204255-26204274 | None:intergenic | 30.0% | |
| TAGTCAAATAGCAACTATAG+CGG | + | chr2_2:26204279-26204298 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTTCTTGTATCCCT+TGG | - | chr2_2:26204456-26204475 | Msa0246010:CDS | 30.0% |
| ! | TTTAGTTTCTTGTATCCCTT+GGG | - | chr2_2:26204457-26204476 | Msa0246010:CDS | 30.0% |
| TACACTAACAATTAACCCAA+GGG | + | chr2_2:26204475-26204494 | None:intergenic | 30.0% | |
| TTACACTAACAATTAACCCA+AGG | + | chr2_2:26204476-26204495 | None:intergenic | 30.0% | |
| GAGTGATTAGTGATAGTATT+AGG | - | chr2_2:26204703-26204722 | Msa0246010:intron | 30.0% | |
| ! | TGCATCATCCATAACATTTT+AGG | + | chr2_2:26204855-26204874 | None:intergenic | 30.0% |
| AATGTTATGGATGATGCATT+TGG | - | chr2_2:26204857-26204876 | Msa0246010:intron | 30.0% | |
| TGATTAATGTTATGGAACCT+CGG | - | chr2_2:26204922-26204941 | Msa0246010:intron | 30.0% | |
| ! | TGCATCATCTACAATGTTTT+AGG | + | chr2_2:26205061-26205080 | None:intergenic | 30.0% |
| AACATTGTAGATGATGCATT+TGG | - | chr2_2:26205063-26205082 | Msa0246010:intron | 30.0% | |
| AGATGATACATTAGAGCTTA+TGG | - | chr2_2:26205274-26205293 | Msa0246010:intron | 30.0% | |
| ! | AATGCATCATAACTGACTTT+AGG | - | chr2_2:26205329-26205348 | Msa0246010:intron | 30.0% |
| TTCCTTGTACAGGATTATTA+TGG | - | chr2_2:26205393-26205412 | Msa0246010:intron | 30.0% | |
| GATTATTATGGTGCTTAACA+TGG | - | chr2_2:26205405-26205424 | Msa0246010:intron | 30.0% | |
| GATTTCACAATCAGGTATTA+TGG | + | chr2_2:26205434-26205453 | None:intergenic | 30.0% | |
| ATACCTGATTGTGAAATCAT+TGG | - | chr2_2:26205436-26205455 | Msa0246010:intron | 30.0% | |
| TACCTGATTGTGAAATCATT+GGG | - | chr2_2:26205437-26205456 | Msa0246010:intron | 30.0% | |
| !! | AAATTTTTGTTGTAAAGCGG+AGG | + | chr2_2:26205625-26205644 | None:intergenic | 30.0% |
| TCCGCTTTACAACAAAAATT+TGG | - | chr2_2:26205624-26205643 | Msa0246010:intron | 30.0% | |
| !! | GCCAAATTTTTGTTGTAAAG+CGG | + | chr2_2:26205628-26205647 | None:intergenic | 30.0% |
| AATGCTATCCTTGATGTTAT+TGG | - | chr2_2:26206162-26206181 | Msa0246010:intron | 30.0% | |
| ATGCTATCCTTGATGTTATT+GGG | - | chr2_2:26206163-26206182 | Msa0246010:intron | 30.0% | |
| TTGAATCTAAAGGACAATTC+TGG | - | chr2_2:26206255-26206274 | Msa0246010:intron | 30.0% | |
| TCTTCAATGAGTTTGTGTTT+AGG | - | chr2_2:26206955-26206974 | Msa0246010:CDS | 30.0% | |
| !! | ATTTTATTTCCAAGTTCCGT+AGG | - | chr2_2:26207081-26207100 | Msa0246010:five_prime_UTR | 30.0% |
| ! | GTGTGTGGAGAAAGAAATTT+TGG | + | chr2_2:26202960-26202979 | None:intergenic | 35.0% |
| ATGTCGAGAACTTGAAGTAA+CGG | + | chr2_2:26203066-26203085 | None:intergenic | 35.0% | |
| ! | TAATACTTGCGATTCTGAAG+CGG | + | chr2_2:26203258-26203277 | None:intergenic | 35.0% |
| !!! | TTGTGTGCGTTTTGCTTTTT+AGG | - | chr2_2:26203369-26203388 | Msa0246010:CDS | 35.0% |
| TGTTAGATCGTGGAAAATAG+TGG | - | chr2_2:26203932-26203951 | Msa0246010:CDS | 35.0% | |
| GTCAAATAGCTGTCAAAACA+TGG | + | chr2_2:26204022-26204041 | None:intergenic | 35.0% | |
| !! | CAGAAGTGCTTTAGTTCAAA+TGG | - | chr2_2:26204102-26204121 | Msa0246010:CDS | 35.0% |
| !! | GTTCAAATGGATTACATCAG+CGG | - | chr2_2:26204115-26204134 | Msa0246010:CDS | 35.0% |
| GGCACTATAACACTTTATTG+TGG | + | chr2_2:26204258-26204277 | None:intergenic | 35.0% | |
| ! | ACATAAGTGTTAGCTTCTTG+TGG | - | chr2_2:26204887-26204906 | Msa0246010:intron | 35.0% |
| TGGGCGAATGATTAATGTTA+TGG | - | chr2_2:26204914-26204933 | Msa0246010:intron | 35.0% | |
| ATTATCATAGTTCACTACCG+AGG | + | chr2_2:26204942-26204961 | None:intergenic | 35.0% | |
| GTAACTTCAGTGAAGAATTG+TGG | - | chr2_2:26205140-26205159 | Msa0246010:intron | 35.0% | |
| !! | GTGTTTGTTTTTCCTTGTAC+AGG | - | chr2_2:26205383-26205402 | Msa0246010:intron | 35.0% |
| CACCATAATAATCCTGTACA+AGG | + | chr2_2:26205398-26205417 | None:intergenic | 35.0% | |
| TTCCCAATGATTTCACAATC+AGG | + | chr2_2:26205442-26205461 | None:intergenic | 35.0% | |
| TCTGAATCCACAAATGACTT+TGG | + | chr2_2:26205466-26205485 | None:intergenic | 35.0% | |
| CTCAAAATGCTGGTAGTAAT+GGG | - | chr2_2:26205560-26205579 | Msa0246010:intron | 35.0% | |
| TGGTGCAGTTATGAAAAATG+AGG | - | chr2_2:26205732-26205751 | Msa0246010:intron | 35.0% | |
| ! | TAGGGATTTAAAGCAGCTAT+AGG | + | chr2_2:26205775-26205794 | None:intergenic | 35.0% |
| CCTCAATTGCTTCATAGAAA+CGG | + | chr2_2:26205951-26205970 | None:intergenic | 35.0% | |
| TTCTATGAAGCAATTGAGGT+TGG | - | chr2_2:26205952-26205971 | Msa0246010:intron | 35.0% | |
| TGATTGAAATTCTTCTGTGC+AGG | + | chr2_2:26206012-26206031 | None:intergenic | 35.0% | |
| GAATGAATGGGAAATTATGC+TGG | - | chr2_2:26206038-26206057 | Msa0246010:intron | 35.0% | |
| TGCTATCCTTGATGTTATTG+GGG | - | chr2_2:26206164-26206183 | Msa0246010:intron | 35.0% | |
| ATTCCATTCTTCCTTACGAT+GGG | + | chr2_2:26206216-26206235 | None:intergenic | 35.0% | |
| !!! | GAGAAGGGTTTTGAATCTAA+AGG | - | chr2_2:26206245-26206264 | Msa0246010:intron | 35.0% |
| !! | TTTCCCCATTTTAGCAGTAA+AGG | - | chr2_2:26206359-26206378 | Msa0246010:intron | 35.0% |
| GGTAAGGTTAATGAATTCAG+TGG | - | chr2_2:26206384-26206403 | Msa0246010:intron | 35.0% | |
| GAATTCAGTGGAAAGTCTAT+AGG | - | chr2_2:26206396-26206415 | Msa0246010:intron | 35.0% | |
| TTGATCAAACCAGGTTCTTA+AGG | + | chr2_2:26206475-26206494 | None:intergenic | 35.0% | |
| TGCTTCTCTATCCATTTCTA+AGG | - | chr2_2:26206509-26206528 | Msa0246010:intron | 35.0% | |
| ATGAGTGATGTCCTTAGAAA+TGG | + | chr2_2:26206523-26206542 | None:intergenic | 35.0% | |
| ! | ATTTCTAAGGACATCACTCA+TGG | - | chr2_2:26206522-26206541 | Msa0246010:intron | 35.0% |
| ! | TTTCTAAGGACATCACTCAT+GGG | - | chr2_2:26206523-26206542 | Msa0246010:intron | 35.0% |
| ! | GTTTTGCGTATCTCATTCTT+GGG | + | chr2_2:26206552-26206571 | None:intergenic | 35.0% |
| ! | AGTTTTGCGTATCTCATTCT+TGG | + | chr2_2:26206553-26206572 | None:intergenic | 35.0% |
| AGCTGTGTAACAAAATGGAT+CGG | + | chr2_2:26206661-26206680 | None:intergenic | 35.0% | |
| ! | TTCGTCACTTTCTTATTGCA+CGG | + | chr2_2:26206708-26206727 | None:intergenic | 35.0% |
| AATAAGAAAGTGACGAAGTC+AGG | - | chr2_2:26206711-26206730 | Msa0246010:intron | 35.0% | |
| AAGTTAATCCTGAATGATCC+TGG | + | chr2_2:26206815-26206834 | None:intergenic | 35.0% | |
| AGGATCATTCAGGATTAACT+TGG | - | chr2_2:26206814-26206833 | Msa0246010:CDS | 35.0% | |
| GGATCATTCAGGATTAACTT+GGG | - | chr2_2:26206815-26206834 | Msa0246010:CDS | 35.0% | |
| GTATGTGTTGAAGTATGAAC+AGG | - | chr2_2:26206893-26206912 | Msa0246010:CDS | 35.0% | |
| GTTTAGGCTGAAAATCAAAG+AGG | - | chr2_2:26206971-26206990 | Msa0246010:CDS | 35.0% | |
| GGTGAAGATTACAGTAGTTA+AGG | - | chr2_2:26207016-26207035 | Msa0246010:CDS | 35.0% | |
| TACAGTAGTTAAGGCAGATA+AGG | - | chr2_2:26207025-26207044 | Msa0246010:CDS | 35.0% | |
| TGAATTATTCTGCAGAGAGT+AGG | - | chr2_2:26207048-26207067 | Msa0246010:exon | 35.0% | |
| GAGAACTTGAAGTAACGGTT+TGG | + | chr2_2:26203061-26203080 | None:intergenic | 40.0% | |
| !! | TAACTCGTCCAGTATTGACT+CGG | + | chr2_2:26203194-26203213 | None:intergenic | 40.0% |
| AATACTGGACGAGTTAAGCA+AGG | - | chr2_2:26203198-26203217 | Msa0246010:CDS | 40.0% | |
| ! | GAATCAGTGTTGTTAGATCG+TGG | - | chr2_2:26203922-26203941 | Msa0246010:CDS | 40.0% |
| ! | TGTTAGCTTCTTCTATCTCC+TGG | - | chr2_2:26204678-26204697 | Msa0246010:intron | 40.0% |
| ! | GTTAGCTTCTTCTATCTCCT+GGG | - | chr2_2:26204679-26204698 | Msa0246010:intron | 40.0% |
| TGGGAATCCAAAGTCATTTG+TGG | - | chr2_2:26205456-26205475 | Msa0246010:intron | 40.0% | |
| AATTTGGCTGCTCAAAATGC+TGG | - | chr2_2:26205550-26205569 | Msa0246010:intron | 40.0% | |
| GCTCAAAATGCTGGTAGTAA+TGG | - | chr2_2:26205559-26205578 | Msa0246010:intron | 40.0% | |
| !! | GTAGTAATGGGCAGAATTTC+AGG | - | chr2_2:26205572-26205591 | Msa0246010:intron | 40.0% |
| ! | TGGTATTGAGGTTGAACTGT+TGG | + | chr2_2:26205598-26205617 | None:intergenic | 40.0% |
| !! | TTTTTGTTGTAAAGCGGAGG+AGG | + | chr2_2:26205622-26205641 | None:intergenic | 40.0% |
| CTCCAAATGCTGGTAGTAAT+GGG | - | chr2_2:26205650-26205669 | Msa0246010:intron | 40.0% | |
| !! | GTAGTAATGGGCAGAATTTC+AGG | - | chr2_2:26205572-26205591 | Msa0246010:intron | 40.0% |
| ! | AGCTGCTTTAAATCCCTATC+AGG | - | chr2_2:26205777-26205796 | Msa0246010:intron | 40.0% |
| ! | GCTGCTTTAAATCCCTATCA+GGG | - | chr2_2:26205778-26205797 | Msa0246010:intron | 40.0% |
| CTTTAAATCCCTATCAGGGT+AGG | - | chr2_2:26205782-26205801 | Msa0246010:intron | 40.0% | |
| TATAACAATGCTCGTGGAGA+TGG | - | chr2_2:26205850-26205869 | Msa0246010:intron | 40.0% | |
| TTTGATCTCCTTGATTCCGA+TGG | - | chr2_2:26205886-26205905 | Msa0246010:intron | 40.0% | |
| ATTCCGATGGAGGTGAAATA+CGG | - | chr2_2:26205899-26205918 | Msa0246010:intron | 40.0% | |
| CCGTTTCTATGAAGCAATTG+AGG | - | chr2_2:26205948-26205967 | Msa0246010:intron | 40.0% | |
| GTATAGAACCATCCTCATCT+GGG | + | chr2_2:26206089-26206108 | None:intergenic | 40.0% | |
| CTGAAGGAGAATTGTTGTCT+AGG | + | chr2_2:26206111-26206130 | None:intergenic | 40.0% | |
| AATGTCACTGATAGGTCTGA+AGG | + | chr2_2:26206127-26206146 | None:intergenic | 40.0% | |
| ACAGTCTCAATGTCACTGAT+AGG | + | chr2_2:26206135-26206154 | None:intergenic | 40.0% | |
| TCACAACCCCAATAACATCA+AGG | + | chr2_2:26206173-26206192 | None:intergenic | 40.0% | |
| CATTCCATTCTTCCTTACGA+TGG | + | chr2_2:26206217-26206236 | None:intergenic | 40.0% | |
| CATCGTAAGGAAGAATGGAA+TGG | - | chr2_2:26206215-26206234 | Msa0246010:intron | 40.0% | |
| ATGGAATGGAAACACTGAGA+AGG | - | chr2_2:26206229-26206248 | Msa0246010:intron | 40.0% | |
| TGGAATGGAAACACTGAGAA+GGG | - | chr2_2:26206230-26206249 | Msa0246010:intron | 40.0% | |
| !! | AGAGTGTTGAGCTAACACTT+TGG | - | chr2_2:26206280-26206299 | Msa0246010:intron | 40.0% |
| !! | GAGTGTTGAGCTAACACTTT+GGG | - | chr2_2:26206281-26206300 | Msa0246010:intron | 40.0% |
| ! | AGTGTTGAGCTAACACTTTG+GGG | - | chr2_2:26206282-26206301 | Msa0246010:intron | 40.0% |
| AGGACAAAAGCTTCAAGAGA+TGG | - | chr2_2:26206323-26206342 | Msa0246010:intron | 40.0% | |
| ACAAAAGCTTCAAGAGATGG+TGG | - | chr2_2:26206326-26206345 | Msa0246010:intron | 40.0% | |
| CAGCCTTTACTGCTAAAATG+GGG | + | chr2_2:26206365-26206384 | None:intergenic | 40.0% | |
| CCAGCCTTTACTGCTAAAAT+GGG | + | chr2_2:26206366-26206385 | None:intergenic | 40.0% | |
| ACCAGCCTTTACTGCTAAAA+TGG | + | chr2_2:26206367-26206386 | None:intergenic | 40.0% | |
| TTTAGCAGTAAAGGCTGGTA+AGG | - | chr2_2:26206368-26206387 | Msa0246010:intron | 40.0% | |
| CATAAATCCAGATTTCCCTG+AGG | - | chr2_2:26206443-26206462 | Msa0246010:intron | 40.0% | |
| ! | AGAACCTGGTTTGATCAAGT+TGG | - | chr2_2:26206477-26206496 | Msa0246010:intron | 40.0% |
| ! | GAACCTGGTTTGATCAAGTT+GGG | - | chr2_2:26206478-26206497 | Msa0246010:intron | 40.0% |
| TTTCCCAACTTGATCAAACC+AGG | + | chr2_2:26206484-26206503 | None:intergenic | 40.0% | |
| ! | TTCTAAGGACATCACTCATG+GGG | - | chr2_2:26206524-26206543 | Msa0246010:intron | 40.0% |
| ATCGGTCCTCATGAATGATA+CGG | + | chr2_2:26206643-26206662 | None:intergenic | 40.0% | |
| AATCACATTCCTCAAACTCC+TGG | + | chr2_2:26206767-26206786 | None:intergenic | 40.0% | |
| AATGATCCTGGATTTGAGCT+TGG | + | chr2_2:26206803-26206822 | None:intergenic | 40.0% | |
| TGTGTTGAAGTATGAACAGG+AGG | - | chr2_2:26206896-26206915 | Msa0246010:CDS | 40.0% | |
| !! | ACGCTGTTGGTGAGAGTTTT+TGG | + | chr2_2:26203106-26203125 | None:intergenic | 45.0% |
| CATAGCGTGATGTGACGAAA+CGG | + | chr2_2:26203151-26203170 | None:intergenic | 45.0% | |
| CTCAATGACCGAGTCAATAC+TGG | - | chr2_2:26203183-26203202 | Msa0246010:CDS | 45.0% | |
| GTAATCGAGAAGCTGAACGA+TGG | + | chr2_2:26203226-26203245 | None:intergenic | 45.0% | |
| GGATTACATCAGCGGTACTA+TGG | - | chr2_2:26204123-26204142 | Msa0246010:CDS | 45.0% | |
| CTATCACTAATCACTCTCCC+AGG | + | chr2_2:26204699-26204718 | None:intergenic | 45.0% | |
| ! | TGTTAGCTTCTTGTGGCTCT+TGG | - | chr2_2:26204894-26204913 | Msa0246010:intron | 45.0% |
| ! | GTTAGCTTCTTGTGGCTCTT+GGG | - | chr2_2:26204895-26204914 | Msa0246010:intron | 45.0% |
| TCAGGCAATGCTTTCTGAAC+TGG | + | chr2_2:26205493-26205512 | None:intergenic | 45.0% | |
| AGCATTGCCTGATAACACTG+TGG | - | chr2_2:26205501-26205520 | Msa0246010:intron | 45.0% | |
| AATTTGGCTGCTCCAAATGC+TGG | - | chr2_2:26205640-26205659 | Msa0246010:intron | 45.0% | |
| GCTCCAAATGCTGGTAGTAA+TGG | - | chr2_2:26205649-26205668 | Msa0246010:intron | 45.0% | |
| TGCCCATTACTACCAGCATT+TGG | + | chr2_2:26205565-26205584 | None:intergenic | 45.0% | |
| TGGTATGGAGGTTGAACTGT+TGG | + | chr2_2:26205688-26205707 | None:intergenic | 45.0% | |
| GCTATAGGTATTACACGTGC+TGG | + | chr2_2:26205760-26205779 | None:intergenic | 45.0% | |
| TAAATCCCTATCAGGGTAGG+TGG | - | chr2_2:26205785-26205804 | Msa0246010:intron | 45.0% | |
| AAATCCCTATCAGGGTAGGT+GGG | - | chr2_2:26205786-26205805 | Msa0246010:intron | 45.0% | |
| AAGGCAAGGGTTACTGCAAA+AGG | - | chr2_2:26205814-26205833 | Msa0246010:intron | 45.0% | |
| ! | CTCCACGAGCATTGTTATAG+CGG | + | chr2_2:26205849-26205868 | None:intergenic | 45.0% |
| TTTCACCTCCATCGGAATCA+AGG | + | chr2_2:26205897-26205916 | None:intergenic | 45.0% | |
| TTCCGATGGAGGTGAAATAC+GGG | - | chr2_2:26205900-26205919 | Msa0246010:intron | 45.0% | |
| TACCCGTATTTCACCTCCAT+CGG | + | chr2_2:26205905-26205924 | None:intergenic | 45.0% | |
| GGTATAGAACCATCCTCATC+TGG | + | chr2_2:26206090-26206109 | None:intergenic | 45.0% | |
| ATCCTTCAGTTCCCATCGTA+AGG | - | chr2_2:26206202-26206221 | Msa0246010:intron | 45.0% | |
| TTCCTTACGATGGGAACTGA+AGG | + | chr2_2:26206207-26206226 | None:intergenic | 45.0% | |
| GTTCCCATCGTAAGGAAGAA+TGG | - | chr2_2:26206210-26206229 | Msa0246010:intron | 45.0% | |
| ! | TTTGGGGTGAATTCTGCAAC+AGG | - | chr2_2:26206298-26206317 | Msa0246010:intron | 45.0% |
| TTGGGGTGAATTCTGCAACA+GGG | - | chr2_2:26206299-26206318 | Msa0246010:intron | 45.0% | |
| !! | TTCAAGAGATGGTGGATGCT+GGG | - | chr2_2:26206334-26206353 | Msa0246010:intron | 45.0% |
| !! | CCCATTTTAGCAGTAAAGGC+TGG | - | chr2_2:26206363-26206382 | Msa0246010:intron | 45.0% |
| TTCTTAAGGTCTGAGCCTCA+GGG | + | chr2_2:26206461-26206480 | None:intergenic | 45.0% | |
| TCTAAGGACATCACTCATGG+GGG | - | chr2_2:26206525-26206544 | Msa0246010:intron | 45.0% | |
| AGCCAGACTGGATAACAATG+AGG | - | chr2_2:26206613-26206632 | Msa0246010:intron | 45.0% | |
| GCCAGACTGGATAACAATGA+GGG | - | chr2_2:26206614-26206633 | Msa0246010:intron | 45.0% | |
| GGGCAAGCTGTGTAACAAAA+TGG | + | chr2_2:26206666-26206685 | None:intergenic | 45.0% | |
| GTCGATCTCCAATCATCAGA+GGG | + | chr2_2:26206686-26206705 | None:intergenic | 45.0% | |
| CGAAGTCAGGAGACACAAAA+TGG | - | chr2_2:26206724-26206743 | Msa0246010:intron | 45.0% | |
| TAGATGCAACCAGGAGTTTG+AGG | - | chr2_2:26206755-26206774 | Msa0246010:intron | 45.0% | |
| GCTCAAATCCAGGATCATTC+AGG | - | chr2_2:26206804-26206823 | Msa0246010:CDS | 45.0% | |
| AACTTGGGTAACTGCTTTCC+AGG | - | chr2_2:26206830-26206849 | Msa0246010:CDS | 45.0% | |
| TAACTGCTTTCCAGGAAGCA+GGG | - | chr2_2:26206838-26206857 | Msa0246010:CDS | 45.0% | |
| CAGGAGGATGATGAGAAGTT+TGG | - | chr2_2:26206912-26206931 | Msa0246010:CDS | 45.0% | |
| TCTCACCGCAAACGCTATTC+CGG | - | chr2_2:26203011-26203030 | Msa0246010:CDS | 50.0% | |
| TATCGCCGGAATAGCGTTTG+CGG | + | chr2_2:26203019-26203038 | None:intergenic | 50.0% | |
| GAAGAAGACGGTAACGCTGT+TGG | + | chr2_2:26203119-26203138 | None:intergenic | 50.0% | |
| !! | GACTCGGTCATTGAGTTGAG+CGG | + | chr2_2:26203178-26203197 | None:intergenic | 50.0% |
| TTGCCTGATAACACTGTGGC+TGG | - | chr2_2:26205505-26205524 | Msa0246010:intron | 50.0% | |
| GAACCAGCCACAGTGTTATC+AGG | + | chr2_2:26205511-26205530 | None:intergenic | 50.0% | |
| TGTTGTAAAGCGGAGGAGGT+TGG | + | chr2_2:26205618-26205637 | None:intergenic | 50.0% | |
| !! | TAAAGCGGAGGAGGTTGGTA+TGG | + | chr2_2:26205613-26205632 | None:intergenic | 50.0% |
| CTTTGTAAAGCGGAGGAGGT+TGG | + | chr2_2:26205708-26205727 | None:intergenic | 50.0% | |
| CAACCTCCTCCGCTTTACAA+AGG | - | chr2_2:26205616-26205635 | Msa0246010:intron | 50.0% | |
| GCACCACGACCTTTGTAAAG+CGG | + | chr2_2:26205718-26205737 | None:intergenic | 50.0% | |
| TGCAGTAACCCTTGCCTTGA+TGG | + | chr2_2:26205812-26205831 | None:intergenic | 50.0% | |
| GATCTCCTTGATTCCGATGG+AGG | - | chr2_2:26205889-26205908 | Msa0246010:intron | 50.0% | |
| GGTGAATTCTGCAACAGGGA+AGG | - | chr2_2:26206303-26206322 | Msa0246010:intron | 50.0% | |
| !! | CTTCAAGAGATGGTGGATGC+TGG | - | chr2_2:26206333-26206352 | Msa0246010:intron | 50.0% |
| !! | TCAAGAGATGGTGGATGCTG+GGG | - | chr2_2:26206335-26206354 | Msa0246010:intron | 50.0% |
| GTTCTTAAGGTCTGAGCCTC+AGG | + | chr2_2:26206462-26206481 | None:intergenic | 50.0% | |
| AGGCTCAGACCTTAAGAACC+TGG | - | chr2_2:26206463-26206482 | Msa0246010:intron | 50.0% | |
| ! | GATGAAGATCTAGGGCGTTC+AGG | - | chr2_2:26206588-26206607 | Msa0246010:intron | 50.0% |
| GCCCTCATTGTTATCCAGTC+TGG | + | chr2_2:26206618-26206637 | None:intergenic | 50.0% | |
| GGGCAACCGTATCATTCATG+AGG | - | chr2_2:26206634-26206653 | Msa0246010:intron | 50.0% | |
| ACAGCTTGCCCTCTGATGAT+TGG | - | chr2_2:26206675-26206694 | Msa0246010:intron | 50.0% | |
| GGTCGATCTCCAATCATCAG+AGG | + | chr2_2:26206687-26206706 | None:intergenic | 50.0% | |
| GCAGTGTGATAGATGCAACC+AGG | - | chr2_2:26206746-26206765 | Msa0246010:intron | 50.0% | |
| CCTGGATTTGAGCTTGGAGA+AGG | + | chr2_2:26206797-26206816 | None:intergenic | 50.0% | |
| CCTTCTCCAAGCTCAAATCC+AGG | - | chr2_2:26206794-26206813 | Msa0246010:CDS | 50.0% | |
| GTAACTGCTTTCCAGGAAGC+AGG | - | chr2_2:26206837-26206856 | Msa0246010:CDS | 50.0% | |
| AACTGCTTTCCAGGAAGCAG+GGG | - | chr2_2:26206839-26206858 | Msa0246010:CDS | 50.0% | |
| GAAGCAGGGGAGGAGATTAT+GGG | - | chr2_2:26206852-26206871 | Msa0246010:CDS | 50.0% | |
| AAGCAGGGGAGGAGATTATG+GGG | - | chr2_2:26206853-26206872 | Msa0246010:CDS | 50.0% | |
| GTGGTTGTTGCGGTTGTGTG+TGG | + | chr2_2:26202975-26202994 | None:intergenic | 55.0% | |
| ACCGCAACAACCACCACCAA+TGG | - | chr2_2:26202981-26203000 | Msa0246010:CDS | 55.0% | |
| !! | GCCATTGGTGGTGGTTGTTG+CGG | + | chr2_2:26202985-26203004 | None:intergenic | 55.0% |
| GCAACAACCACCACCAATGG+CGG | - | chr2_2:26202984-26203003 | Msa0246010:CDS | 55.0% | |
| AGATTCACCGCCATTGGTGG+TGG | + | chr2_2:26202994-26203013 | None:intergenic | 55.0% | |
| GTGAGATTCACCGCCATTGG+TGG | + | chr2_2:26202997-26203016 | None:intergenic | 55.0% | |
| GCTATTCCGGCGATAATCGC+CGG | - | chr2_2:26203024-26203043 | Msa0246010:CDS | 55.0% | |
| GTGATGTGACGAAACGGCGT+CGG | + | chr2_2:26203145-26203164 | None:intergenic | 55.0% | |
| !! | AGCGGAGGAGGTTGGTATTG+AGG | + | chr2_2:26205610-26205629 | None:intergenic | 55.0% |
| CGACCTTTGTAAAGCGGAGG+AGG | + | chr2_2:26205712-26205731 | None:intergenic | 55.0% | |
| CCACGACCTTTGTAAAGCGG+AGG | + | chr2_2:26205715-26205734 | None:intergenic | 55.0% | |
| CCTCCGCTTTACAAAGGTCG+TGG | - | chr2_2:26205712-26205731 | Msa0246010:intron | 55.0% | |
| ATGGCCCACCTACCCTGATA+GGG | + | chr2_2:26205793-26205812 | None:intergenic | 55.0% | |
| TAGGTGGGCCATCAAGGCAA+GGG | - | chr2_2:26205801-26205820 | Msa0246010:intron | 55.0% | |
| CGCCGCTATAACAATGCTCG+TGG | - | chr2_2:26205844-26205863 | Msa0246010:intron | 55.0% | |
| GGTTGAGCTTTGCCCAGATG+AGG | - | chr2_2:26206074-26206093 | Msa0246010:intron | 55.0% | |
| GAGCTTTGCCCAGATGAGGA+TGG | - | chr2_2:26206078-26206097 | Msa0246010:intron | 55.0% | |
| GTCTGAGCCTCAGGGAAATC+TGG | + | chr2_2:26206453-26206472 | None:intergenic | 55.0% | |
| TAATCTCCTCCCCTGCTTCC+TGG | + | chr2_2:26206851-26206870 | None:intergenic | 55.0% | |
| GGAAGCAGGGGAGGAGATTA+TGG | - | chr2_2:26206851-26206870 | Msa0246010:CDS | 55.0% | |
| GCGGTGAGATTCACCGCCAT+TGG | + | chr2_2:26203000-26203019 | None:intergenic | 60.0% | |
| ! | CGGCGTCGGAGAGAAGAAGA+CGG | + | chr2_2:26203131-26203150 | None:intergenic | 60.0% |
| !! | AGCGGAGGAGGTTGGTATGG+AGG | + | chr2_2:26205700-26205719 | None:intergenic | 60.0% |
| GATGGCCCACCTACCCTGAT+AGG | + | chr2_2:26205794-26205813 | None:intergenic | 60.0% | |
| TCAGGGTAGGTGGGCCATCA+AGG | - | chr2_2:26205795-26205814 | Msa0246010:intron | 60.0% | |
| GTAGGTGGGCCATCAAGGCA+AGG | - | chr2_2:26205800-26205819 | Msa0246010:intron | 60.0% | |
| TGCTTTCCAGGAAGCAGGGG+AGG | - | chr2_2:26206842-26206861 | Msa0246010:CDS | 60.0% | |
| ACGTCGCCGGCGATTATCGC+CGG | + | chr2_2:26203033-26203052 | None:intergenic | 65.0% | |
| GGCGTTCAGGCAAGCCAGAC+TGG | - | chr2_2:26206601-26206620 | Msa0246010:intron | 65.0% | |
| !! | CGGTTTGGCGTCGACGTCGC+CGG | + | chr2_2:26203046-26203065 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 26202952 | 26207109 | 26202952 | ID=Msa0246010;Name=Msa0246010 |
| chr2_2 | mRNA | 26202952 | 26207109 | 26202952 | ID=Msa0246010-mRNA-1;Parent=Msa0246010;Name=Msa0246010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=48|1|0.5|1|1|1|2|0|658 |
| chr2_2 | exon | 26202952 | 26204656 | 26202952 | ID=Msa0246010-mRNA-1:exon:9751;Parent=Msa0246010-mRNA-1 |
| chr2_2 | exon | 26206790 | 26207109 | 26206790 | ID=Msa0246010-mRNA-1:exon:9750;Parent=Msa0246010-mRNA-1 |
| chr2_2 | five_prime_UTR | 26207062 | 26207109 | 26207062 | ID=Msa0246010-mRNA-1:five_prime_utr;Parent=Msa0246010-mRNA-1 |
| chr2_2 | CDS | 26206790 | 26207061 | 26206790 | ID=Msa0246010-mRNA-1:cds;Parent=Msa0246010-mRNA-1 |
| chr2_2 | CDS | 26202952 | 26204656 | 26202952 | ID=Msa0246010-mRNA-1:cds;Parent=Msa0246010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
