AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0203420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203420 MtrunA17_Chr2g0301171 91.584 202 17 0 1 202 1 202 1.31e-137 383
Msa0203420 MtrunA17_Chr2g0301181 71.304 230 38 3 1 202 1 230 1.07e-110 316
Msa0203420 MtrunA17_Chr2g0301191 71.963 214 48 2 1 202 1 214 2.06e-104 299
Msa0203420 MtrunA17_Chr1g0150691 41.395 215 88 9 14 202 17 219 2.62e-39 134
Msa0203420 MtrunA17_Chr1g0150631 40.465 215 84 8 14 202 33 229 7.52e-38 130
Msa0203420 MtrunA17_Chr1g0150671 41.791 201 96 6 14 193 41 241 1.82e-37 131
Msa0203420 MtrunA17_Chr1g0150661 39.409 203 90 7 18 202 34 221 6.77e-35 122
Msa0203420 MtrunA17_Chr3g0136551 62.069 87 29 1 19 101 65 151 4.75e-31 114
Msa0203420 MtrunA17_Chr3g0136541 62.353 85 28 1 21 101 42 126 4.72e-30 110
Msa0203420 MtrunA17_Chr7g0225131 70.588 68 17 1 14 81 24 88 8.77e-29 103
Msa0203420 MtrunA17_Chr4g0017851 46.316 95 50 1 6 100 106 199 2.66e-23 94.7
Msa0203420 MtrunA17_Chr3g0134161 68.421 57 18 0 19 75 45 101 9.81e-23 90.1
Msa0203420 MtrunA17_Chr5g0401871 47.674 86 41 1 19 100 25 110 9.04e-22 87.8
Msa0203420 MtrunA17_Chr1g0153151 64.912 57 20 0 19 75 44 100 3.08e-21 86.3
Msa0203420 MtrunA17_Chr7g0275841 52.055 73 31 1 9 77 14 86 3.51e-21 85.9
Msa0203420 MtrunA17_Chr3g0115631 59.016 61 25 0 16 76 147 207 2.23e-20 87.0
Msa0203420 MtrunA17_Chr5g0425561 50.617 81 36 1 16 92 170 250 3.07e-20 87.0
Msa0203420 MtrunA17_Chr2g0324131 57.143 63 27 0 14 76 213 275 9.29e-20 86.3
Msa0203420 MtrunA17_Chr8g0382491 55.738 61 27 0 16 76 110 170 1.71e-19 84.0
Msa0203420 MtrunA17_Chr1g0196781 55.932 59 26 0 18 76 151 209 1.98e-19 84.3
Msa0203420 MtrunA17_Chr1g0170531 53.030 66 30 1 13 77 83 148 2.00e-19 82.8
Msa0203420 MtrunA17_Chr8g0346741 53.333 60 28 0 18 77 38 97 2.91e-19 81.3
Msa0203420 MtrunA17_Chr1g0195151 32.544 169 98 4 2 166 61 217 8.60e-19 82.4
Msa0203420 MtrunA17_Chr4g0055781 50.000 74 36 1 3 75 86 159 1.00e-18 81.3
Msa0203420 MtrunA17_Chr5g0399441 48.649 74 38 0 2 75 11 84 1.01e-18 79.7
Msa0203420 MtrunA17_Chr6g0486701 62.069 58 22 0 18 75 43 100 1.46e-18 80.1
Msa0203420 MtrunA17_Chr2g0295421 43.210 81 46 0 2 82 79 159 1.81e-18 80.9
Msa0203420 MtrunA17_Chr2g0316931 34.503 171 62 6 19 174 31 166 2.16e-18 79.3
Msa0203420 MtrunA17_Chr2g0334031 43.902 82 46 0 12 93 110 191 2.40e-18 81.6
Msa0203420 MtrunA17_Chr3g0140161 38.211 123 65 2 14 136 38 149 7.73e-18 77.8
Msa0203420 MtrunA17_Chr7g0232261 58.621 58 24 0 19 76 61 118 1.14e-17 78.2
Msa0203420 MtrunA17_Chr8g0334801 57.895 57 24 0 19 75 52 108 1.35e-17 77.4
Msa0203420 MtrunA17_Chr3g0099871 39.496 119 65 3 19 133 27 142 1.43e-17 77.8
Msa0203420 MtrunA17_Chr2g0282621 54.545 66 28 1 19 84 15 78 1.45e-17 76.6
Msa0203420 MtrunA17_Chr4g0055801 56.897 58 24 1 19 75 154 211 1.97e-17 78.6
Msa0203420 MtrunA17_Chr8g0344961 40.964 83 49 0 11 93 116 198 1.98e-17 79.3
Msa0203420 MtrunA17_Chr2g0323171 56.897 58 25 0 19 76 65 122 2.44e-17 76.3
Msa0203420 MtrunA17_Chr4g0023411 56.897 58 25 0 19 76 65 122 3.07e-17 76.3
Msa0203420 MtrunA17_Chr7g0221501 54.386 57 26 0 19 75 51 107 3.25e-17 75.9
Msa0203420 MtrunA17_Chr4g0055951 51.562 64 31 0 12 75 67 130 5.03e-17 77.0
Msa0203420 MtrunA17_Chr8g0367911 55.357 56 25 0 19 74 44 99 5.42e-17 77.4
Msa0203420 MtrunA17_Chr8g0335331 57.627 59 24 1 19 76 125 183 7.01e-17 75.5
Msa0203420 MtrunA17_Chr8g0335311 57.627 59 24 1 19 76 96 154 7.72e-17 75.1
Msa0203420 MtrunA17_Chr4g0063751 44.872 78 43 0 16 93 4 81 1.00e-16 75.1
Msa0203420 MtrunA17_Chr2g0282651 56.140 57 25 0 19 75 70 126 1.20e-16 75.9
Msa0203420 MtrunA17_Chr3g0137174 53.333 60 28 0 19 78 8 67 1.51e-16 74.3
Msa0203420 MtrunA17_Chr8g0340311 53.448 58 27 0 19 76 47 104 2.11e-16 74.3
Msa0203420 MtrunA17_Chr8g0390091 51.613 62 30 0 14 75 32 93 2.24e-16 74.7
Msa0203420 MtrunA17_Chr7g0221471 52.632 57 27 0 19 75 51 107 2.63e-16 73.2
Msa0203420 MtrunA17_Chr2g0331231 53.448 58 27 0 18 75 40 97 3.48e-16 73.6
Msa0203420 MtrunA17_Chr1g0186671 58.333 60 24 1 19 77 19 78 3.82e-16 72.0
Msa0203420 MtrunA17_Chr4g0002631 53.333 60 28 0 19 78 8 67 4.10e-16 73.2
Msa0203420 MtrunA17_Chr8g0383591 39.252 107 62 2 19 125 145 248 4.48e-16 75.1
Msa0203420 MtrunA17_Chr5g0438801 56.140 57 25 0 19 75 51 107 4.53e-16 74.7
Msa0203420 MtrunA17_Chr4g0003421 51.667 60 29 0 16 75 37 96 4.91e-16 73.9
Msa0203420 MtrunA17_Chr4g0046161 54.839 62 23 2 19 77 57 116 5.56e-16 70.9
Msa0203420 MtrunA17_Chr4g0044881 50.794 63 31 0 13 75 108 170 6.06e-16 73.6
Msa0203420 MtrunA17_Chr1g0186731 55.000 60 26 1 19 77 21 80 6.15e-16 71.6
Msa0203420 MtrunA17_Chr5g0438831 54.386 57 26 0 19 75 46 102 8.54e-16 73.9
Msa0203420 MtrunA17_Chr2g0333011 49.180 61 31 0 15 75 3 63 8.74e-16 72.0
Msa0203420 MtrunA17_Chr3g0114761 45.536 112 51 3 1 102 1 112 8.80e-16 72.8
Msa0203420 MtrunA17_Chr5g0412641 52.381 63 28 1 19 79 46 108 9.04e-16 74.3
Msa0203420 MtrunA17_Chr4g0044871 42.683 82 38 1 19 91 96 177 9.51e-16 72.8
Msa0203420 MtrunA17_Chr1g0196871 38.710 93 50 2 6 91 3 95 1.12e-15 69.7
Msa0203420 MtrunA17_Chr5g0396301 50.000 60 28 1 19 76 18 77 1.20e-15 71.2
Msa0203420 MtrunA17_Chr1g0183981 50.000 76 36 2 1 74 56 131 1.25e-15 72.4
Msa0203420 MtrunA17_Chr4g0044911 54.386 57 26 0 19 75 96 152 1.66e-15 72.4
Msa0203420 MtrunA17_Chr1g0184081 53.333 60 27 1 19 77 21 80 2.08e-15 70.1
Msa0203420 MtrunA17_Chr8g0375031 53.571 56 26 0 19 74 125 180 2.81e-15 71.6
Msa0203420 MtrunA17_Chr4g0044901 54.386 57 26 0 19 75 96 152 2.87e-15 71.6
Msa0203420 MtrunA17_Chr6g0473961 40.404 99 55 1 18 112 53 151 2.90e-15 71.2
Msa0203420 MtrunA17_Chr5g0396181 45.745 94 51 0 7 100 9 102 3.14e-15 70.9
Msa0203420 MtrunA17_Chr2g0321071 40.909 88 50 2 18 103 46 133 5.10e-15 70.9
Msa0203420 MtrunA17_Chr7g0265851 52.542 59 28 0 18 76 23 81 7.06e-15 70.1
Msa0203420 MtrunA17_Chr2g0283171 52.459 61 26 2 19 77 63 122 7.68e-15 68.9
Msa0203420 MtrunA17_Chr8g0335321 50.847 59 28 1 19 76 96 154 1.26e-14 69.3
Msa0203420 MtrunA17_Chr6g0473931 41.053 95 56 0 18 112 32 126 1.38e-14 69.3
Msa0203420 MtrunA17_Chr1g0184061 46.154 78 38 2 1 74 56 133 1.42e-14 69.7
Msa0203420 MtrunA17_Chr7g0257911 53.448 58 27 0 19 76 31 88 1.43e-14 70.5
Msa0203420 MtrunA17_Chr2g0297331 46.575 73 38 1 6 77 1 73 1.49e-14 67.4
Msa0203420 MtrunA17_Chr5g0437671 51.724 58 28 0 19 76 85 142 1.56e-14 71.2
Msa0203420 MtrunA17_Chr6g0473981 36.697 109 65 1 1 105 32 140 2.44e-14 69.3
Msa0203420 MtrunA17_Chr5g0437371 53.571 56 26 0 19 74 66 121 2.58e-14 70.1
Msa0203420 MtrunA17_Chr6g0473741 38.636 88 54 0 18 105 65 152 2.69e-14 68.9
Msa0203420 MtrunA17_Chr1g0158971 40.000 85 51 0 19 103 115 199 3.08e-14 70.1
Msa0203420 MtrunA17_Chr5g0396741 50.617 81 38 1 18 96 116 196 3.10e-14 69.7
Msa0203420 MtrunA17_Chr2g0283181 44.156 77 39 2 3 75 130 206 3.11e-14 69.7
Msa0203420 MtrunA17_Chr1g0203861 54.386 57 26 0 18 74 43 99 4.33e-14 68.2
Msa0203420 MtrunA17_Chr6g0473781 39.773 88 53 0 18 105 56 143 4.71e-14 68.2
Msa0203420 MtrunA17_Chr7g0250731 50.847 59 28 1 19 76 61 119 4.95e-14 67.8
Msa0203420 MtrunA17_Chr5g0396191 59.649 57 23 0 19 75 11 67 5.46e-14 67.4
Msa0203420 MtrunA17_Chr5g0424051 52.632 76 35 1 1 75 78 153 5.62e-14 68.9
Msa0203420 MtrunA17_Chr7g0252381 51.786 56 27 0 19 74 42 97 5.76e-14 68.9
Msa0203420 MtrunA17_Chr5g0396171 53.571 56 26 0 21 76 26 81 5.88e-14 65.1
Msa0203420 MtrunA17_Chr7g0250721 50.847 59 28 1 19 76 61 119 6.70e-14 67.4
Msa0203420 MtrunA17_Chr2g0286161 48.214 56 29 0 19 74 50 105 8.06e-14 68.6
Msa0203420 MtrunA17_Chr7g0250711 44.872 78 39 2 19 95 60 134 8.55e-14 67.0
Msa0203420 MtrunA17_Chr7g0261151 52.459 61 26 2 19 77 20 79 8.80e-14 65.9
Msa0203420 MtrunA17_Chr6g0473861 38.636 88 54 0 18 105 62 149 1.01e-13 68.2
Msa0203420 MtrunA17_Chr4g0066931 42.857 63 36 0 12 74 46 108 1.15e-13 68.6
Msa0203420 MtrunA17_Chr7g0261101 52.459 61 26 2 19 77 20 79 1.23e-13 65.5
Msa0203420 MtrunA17_Chr3g0126321 32.727 110 60 3 19 114 113 222 2.08e-13 67.8
Msa0203420 MtrunA17_Chr6g0473971 52.632 57 27 0 18 74 53 109 2.16e-13 66.6
Msa0203420 MtrunA17_Chr6g0474001 39.773 88 53 0 18 105 53 140 2.23e-13 67.0
Msa0203420 MtrunA17_Chr6g0473941 54.386 57 26 0 18 74 32 88 2.42e-13 65.9
Msa0203420 MtrunA17_Chr4g0055761 51.724 58 27 1 19 75 145 202 4.26e-13 66.2
Msa0203420 MtrunA17_Chr1g0146191 50.000 76 36 1 3 76 29 104 4.67e-13 65.9
Msa0203420 MtrunA17_Chr1g0184031 54.237 59 26 1 17 74 82 140 5.13e-13 65.5
Msa0203420 MtrunA17_Chr4g0026931 43.478 69 38 1 10 77 122 190 5.63e-13 65.9
Msa0203420 MtrunA17_Chr1g0184011 54.545 55 24 1 21 74 86 140 5.71e-13 65.1
Msa0203420 MtrunA17_Chr1g0189941 46.429 56 30 0 19 74 24 79 5.79e-13 63.9
Msa0203420 MtrunA17_Chr6g0473881 52.632 57 27 0 18 74 109 165 6.47e-13 66.2
Msa0203420 MtrunA17_Chr5g0398091 40.449 89 47 1 18 100 53 141 7.66e-13 65.1
Msa0203420 MtrunA17_Chr1g0186681 48.333 60 29 1 19 76 19 78 8.28e-13 62.8
Msa0203420 MtrunA17_Chr5g0398061 40.449 89 47 1 18 100 48 136 1.04e-12 64.7
Msa0203420 MtrunA17_Chr4g0026881 41.791 67 38 1 12 77 90 156 1.06e-12 64.7
Msa0203420 MtrunA17_Chr5g0432821 41.026 78 35 1 17 94 122 188 1.16e-12 65.1
Msa0203420 MtrunA17_Chr6g0486711 45.238 84 46 0 18 101 48 131 1.70e-12 63.9
Msa0203420 MtrunA17_Chr8g0387801 50.000 56 28 0 19 74 107 162 1.88e-12 64.7
Msa0203420 MtrunA17_Chr6g0473771 50.877 57 28 0 18 74 42 98 2.76e-12 61.2
Msa0203420 MtrunA17_Chr7g0261181 56.667 60 25 1 19 77 13 72 3.36e-12 61.2
Msa0203420 MtrunA17_Chr1g0183961 54.688 64 28 1 15 77 23 86 3.59e-12 61.6
Msa0203420 MtrunA17_Chr1g0184071 52.632 57 26 1 19 74 69 125 3.99e-12 62.0
Msa0203420 MtrunA17_Chr4g0062551 46.552 58 31 0 19 76 53 110 4.16e-12 61.2
Msa0203420 MtrunA17_Chr1g0200931 46.667 60 31 1 16 74 20 79 4.25e-12 61.2
Msa0203420 MtrunA17_Chr1g0170471 39.759 83 43 3 27 102 91 173 4.62e-12 62.0
Msa0203420 MtrunA17_Chr5g0438841 38.043 92 55 1 19 110 16 105 6.88e-12 61.2
Msa0203420 MtrunA17_Chr3g0137831 46.053 76 31 1 19 84 8 83 7.25e-12 62.0
Msa0203420 MtrunA17_Chr4g0062161 46.552 58 31 0 19 76 53 110 7.90e-12 61.6
Msa0203420 MtrunA17_Chr5g0396911 48.333 60 31 0 19 78 112 171 8.09e-12 62.8
Msa0203420 MtrunA17_Chr5g0398081 39.326 89 48 1 18 100 48 136 8.75e-12 62.0
Msa0203420 MtrunA17_Chr4g0057241 48.276 58 29 1 19 76 15 71 2.05e-11 60.1
Msa0203420 MtrunA17_Chr8g0378811 35.052 97 55 2 3 91 37 133 2.52e-11 61.2
Msa0203420 MtrunA17_Chr1g0149331 52.632 57 27 0 19 75 7 63 2.58e-11 60.5
Msa0203420 MtrunA17_Chr7g0217991 41.176 68 40 0 7 74 30 97 3.66e-11 61.6
Msa0203420 MtrunA17_Chr3g0129421 38.318 107 61 1 19 120 170 276 5.47e-11 60.8
Msa0203420 MtrunA17_Chr1g0155751 53.333 60 28 0 16 75 36 95 7.74e-11 59.7
Msa0203420 MtrunA17_Chr1g0167781 47.436 78 36 3 1 74 62 138 8.03e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203420 AT1G19210.1 47.959 196 72 6 17 202 10 185 1.17e-50 162
Msa0203420 AT1G74930.1 44.811 212 90 6 1 202 1 195 3.95e-45 148
Msa0203420 AT5G21960.1 49.296 142 62 1 16 147 4 145 3.23e-39 134
Msa0203420 AT4G31060.1 45.324 139 62 5 8 141 16 145 3.25e-29 107
Msa0203420 AT4G06746.1 60.938 64 25 0 14 77 31 94 2.63e-23 91.3
Msa0203420 AT1G46768.3 62.069 58 22 0 19 76 31 88 1.04e-22 89.4
Msa0203420 AT1G46768.1 62.069 58 22 0 19 76 31 88 1.10e-22 89.7
Msa0203420 AT1G46768.2 62.069 58 22 0 19 76 31 88 1.10e-22 89.7
Msa0203420 AT2G22200.1 63.333 60 22 0 17 76 69 128 5.43e-22 90.5
Msa0203420 AT4G13620.1 49.333 75 38 0 2 76 215 289 2.09e-21 90.9
Msa0203420 AT4G36900.1 58.462 65 27 0 11 75 22 86 1.86e-20 85.1
Msa0203420 AT4G39780.1 54.286 70 29 1 18 84 92 161 1.91e-20 86.7
Msa0203420 AT1G21910.1 61.404 57 22 0 19 75 50 106 2.00e-20 85.9
Msa0203420 AT1G22190.1 57.377 61 26 0 16 76 80 140 2.59e-20 86.3
Msa0203420 AT1G36060.1 60.000 60 24 0 16 75 140 199 2.71e-20 87.0
Msa0203420 AT1G78080.1 59.016 61 25 0 16 76 149 209 2.78e-20 87.0
Msa0203420 AT1G01250.1 49.296 71 36 0 7 77 33 103 1.03e-19 83.2
Msa0203420 AT2G23340.1 57.812 64 27 0 12 75 21 84 1.19e-19 82.4
Msa0203420 AT1G71450.1 61.017 59 23 0 17 75 22 80 1.35e-19 82.4
Msa0203420 AT5G67190.1 61.404 57 22 0 19 75 21 77 2.17e-19 82.0
Msa0203420 AT5G65130.1 55.000 60 27 0 17 76 109 168 2.44e-19 84.0
Msa0203420 AT1G03800.1 31.841 201 105 8 3 198 32 205 2.47e-19 83.2
Msa0203420 AT5G65130.2 55.000 60 27 0 17 76 111 170 2.61e-19 83.6
Msa0203420 AT5G61600.1 63.333 60 21 1 19 77 88 147 2.93e-19 82.8
Msa0203420 AT5G47230.1 54.054 74 32 2 3 75 141 213 3.08e-19 84.0
Msa0203420 AT4G28140.1 57.377 61 26 0 16 76 140 200 3.63e-19 83.6
Msa0203420 AT4G11140.1 31.250 160 102 3 19 175 87 241 3.69e-19 83.6
Msa0203420 AT5G51190.1 55.385 65 28 1 12 75 65 129 4.86e-19 82.0
Msa0203420 AT3G50260.1 48.718 78 39 1 19 96 21 97 8.14e-19 79.7
Msa0203420 AT1G71520.1 52.239 67 28 1 14 76 9 75 8.51e-19 79.3
Msa0203420 AT2G20880.1 56.452 62 27 0 14 75 182 243 1.43e-18 82.4
Msa0203420 AT2G47520.1 48.571 70 36 0 7 76 38 107 1.52e-18 79.3
Msa0203420 AT4G32800.1 39.000 100 61 0 1 100 1 100 1.98e-18 80.5
Msa0203420 AT2G44940.1 35.955 178 82 6 19 171 100 270 3.50e-18 80.9
Msa0203420 AT3G20310.1 50.649 77 38 0 1 77 9 85 4.34e-18 79.7
Msa0203420 AT2G33710.2 53.623 69 30 1 9 75 58 126 9.77e-18 78.6
Msa0203420 AT2G33710.1 53.623 69 30 1 9 75 58 126 1.08e-17 78.2
Msa0203420 AT3G15210.1 56.897 58 25 0 19 76 25 82 1.36e-17 78.2
Msa0203420 AT5G25810.1 45.238 84 46 0 18 101 35 118 1.77e-17 77.8
Msa0203420 AT5G07580.1 47.253 91 39 3 12 93 103 193 2.09e-17 77.4
Msa0203420 AT5G44210.1 57.895 57 24 0 19 75 33 89 3.38e-17 76.6
Msa0203420 AT3G16280.1 55.932 59 26 0 18 76 60 118 3.77e-17 77.0
Msa0203420 AT1G22810.1 54.839 62 26 1 17 76 12 73 4.05e-17 75.1
Msa0203420 AT2G25820.1 44.737 76 42 0 18 93 25 100 6.05e-17 76.3
Msa0203420 AT3G16280.2 55.932 59 26 0 18 76 78 136 6.13e-17 77.0
Msa0203420 AT5G25390.2 53.333 60 28 0 16 75 4 63 8.26e-17 75.5
Msa0203420 AT5G51990.1 31.351 185 112 5 18 202 53 222 1.10e-16 75.9
Msa0203420 AT2G35700.1 54.386 57 26 0 19 75 45 101 1.11e-16 75.1
Msa0203420 AT5G11590.1 44.048 84 47 0 18 101 50 133 1.12e-16 75.9
Msa0203420 AT1G50640.1 57.627 59 25 0 19 77 28 86 1.26e-16 75.5
Msa0203420 AT4G25470.1 39.252 107 65 0 18 124 50 156 1.62e-16 75.1
Msa0203420 AT1G28370.1 49.296 71 33 1 8 75 6 76 2.13e-16 73.6
Msa0203420 AT5G43410.1 47.692 65 33 1 14 77 10 74 2.50e-16 72.4
Msa0203420 AT1G28370.2 49.296 71 33 1 8 75 44 114 3.36e-16 73.9
Msa0203420 AT4G17490.1 52.113 71 31 2 6 75 126 194 3.89e-16 75.1
Msa0203420 AT1G72360.1 37.349 83 52 0 11 93 17 99 4.18e-16 73.9
Msa0203420 AT3G16770.1 43.243 74 42 0 3 76 63 136 4.49e-16 74.3
Msa0203420 AT1G72360.3 35.165 91 59 0 3 93 58 148 4.57e-16 74.7
Msa0203420 AT1G15360.1 52.632 57 27 0 19 75 7 63 5.05e-16 73.6
Msa0203420 AT1G15360.2 52.632 57 27 0 19 75 7 63 5.05e-16 73.6
Msa0203420 AT3G60490.1 49.315 73 34 1 3 75 58 127 5.32e-16 74.3
Msa0203420 AT2G44840.1 50.725 69 33 1 9 76 82 150 7.13e-16 73.6
Msa0203420 AT1G33760.1 37.778 135 79 2 19 153 20 149 8.57e-16 72.4
Msa0203420 AT1G28360.1 55.172 58 26 0 19 76 12 69 8.86e-16 72.4
Msa0203420 AT1G77640.1 47.423 97 45 2 19 109 43 139 9.41e-16 73.6
Msa0203420 AT4G16750.1 52.632 57 27 0 19 75 40 96 1.03e-15 72.0
Msa0203420 AT1G72360.2 37.349 83 52 0 11 93 68 150 1.24e-15 73.6
Msa0203420 AT5G13330.1 41.772 79 41 1 2 75 17 95 1.75e-15 72.4
Msa0203420 AT5G25190.1 50.794 63 31 0 19 81 8 70 1.90e-15 71.6
Msa0203420 AT4G25490.1 54.237 59 27 0 18 76 47 105 2.34e-15 72.0
Msa0203420 AT4G27950.1 45.455 77 42 0 2 78 101 177 2.41e-15 73.6
Msa0203420 AT1G12980.1 50.820 61 30 0 14 74 52 112 4.01e-15 72.8
Msa0203420 AT3G23230.1 50.794 63 30 1 16 77 17 79 5.22e-15 69.3
Msa0203420 AT4G25480.1 52.542 59 28 0 18 76 50 108 6.87e-15 70.9
Msa0203420 AT5G61890.1 52.632 57 27 0 19 75 90 146 8.16e-15 71.2
Msa0203420 AT3G57600.1 53.448 58 27 0 19 76 28 85 1.03e-14 71.2
Msa0203420 AT2G46310.1 49.180 61 31 0 19 79 99 159 1.84e-14 70.9
Msa0203420 AT5G18560.1 42.188 64 37 0 11 74 47 110 2.63e-14 70.9
Msa0203420 AT1G24590.1 53.571 56 26 0 19 74 58 113 2.65e-14 70.5
Msa0203420 AT2G40340.2 49.123 57 29 0 19 75 14 70 2.85e-14 70.1
Msa0203420 AT2G40340.5 49.123 57 29 0 19 75 14 70 2.85e-14 70.1
Msa0203420 AT2G40340.4 49.123 57 29 0 19 75 14 70 2.85e-14 70.1
Msa0203420 AT3G61630.1 53.333 60 28 0 19 78 105 164 3.18e-14 70.1
Msa0203420 AT1G12610.1 40.449 89 53 0 18 106 29 117 4.45e-14 68.6
Msa0203420 AT1G75490.1 50.000 60 30 0 16 75 39 98 5.00e-14 68.2
Msa0203420 AT1G64380.1 58.824 68 26 1 18 83 135 202 5.06e-14 69.7
Msa0203420 AT2G36450.1 55.000 60 26 1 18 76 14 73 6.78e-14 67.4
Msa0203420 AT3G23240.1 47.826 69 33 2 8 74 71 138 7.15e-14 68.2
Msa0203420 AT5G25390.1 51.667 60 26 1 16 75 4 60 7.32e-14 67.4
Msa0203420 AT2G40340.3 49.123 57 29 0 19 75 72 128 7.61e-14 68.9
Msa0203420 AT2G40340.1 49.123 57 29 0 19 75 72 128 8.34e-14 69.3
Msa0203420 AT2G40340.6 49.123 57 29 0 19 75 79 135 8.96e-14 69.3
Msa0203420 AT1G63030.2 37.500 104 58 1 18 121 29 125 1.30e-13 66.6
Msa0203420 AT1G63030.1 37.500 104 58 1 18 121 29 125 1.30e-13 66.6
Msa0203420 AT3G11020.1 51.724 58 28 0 19 76 78 135 1.31e-13 68.6
Msa0203420 AT5G13910.1 50.000 54 27 0 21 74 22 75 1.90e-13 66.6
Msa0203420 AT5G47220.1 53.448 58 26 1 19 75 117 174 1.91e-13 67.4
Msa0203420 AT1G28160.1 50.000 56 28 0 19 74 39 94 2.23e-13 67.0
Msa0203420 AT5G53290.1 51.786 56 27 0 19 74 125 180 2.85e-13 67.8
Msa0203420 AT4G17500.1 53.448 58 26 1 19 75 148 205 3.47e-13 67.0
Msa0203420 AT1G44830.1 63.793 58 20 1 19 75 35 92 4.47e-13 65.9
Msa0203420 AT5G18450.1 51.786 56 27 0 19 74 34 89 4.50e-13 67.0
Msa0203420 AT2G31230.1 39.394 99 49 3 19 115 86 175 5.11e-13 66.2
Msa0203420 AT5G05410.1 50.877 57 28 0 19 75 79 135 5.51e-13 67.0
Msa0203420 AT5G05410.2 50.877 57 28 0 19 75 79 135 5.79e-13 66.6
Msa0203420 AT4G23750.2 50.000 60 30 0 19 78 122 181 5.87e-13 66.6
Msa0203420 AT4G23750.1 50.000 60 30 0 19 78 122 181 5.87e-13 66.6
Msa0203420 AT1G12890.1 42.105 76 42 1 1 74 1 76 6.07e-13 65.5
Msa0203420 AT5G50080.2 52.308 65 31 0 13 77 80 144 2.49e-12 63.9
Msa0203420 AT5G50080.1 52.308 65 31 0 13 77 71 135 2.72e-12 63.5
Msa0203420 AT1G43160.1 42.857 98 46 3 19 115 61 149 3.45e-12 62.8
Msa0203420 AT5G64750.1 37.255 102 52 1 25 126 191 280 6.49e-12 63.9
Msa0203420 AT5G19790.1 41.791 67 39 0 13 79 16 82 1.16e-11 62.4
Msa0203420 AT1G68550.1 34.951 103 54 3 21 123 115 204 1.45e-11 62.8
Msa0203420 AT1G68550.2 34.951 103 54 3 21 123 115 204 1.45e-11 62.8
Msa0203420 AT1G77200.1 48.101 79 38 2 3 81 30 105 2.14e-11 61.6
Msa0203420 AT2G40350.2 45.000 60 33 0 19 78 74 133 2.19e-11 60.1
Msa0203420 AT5G11190.1 51.667 60 29 0 16 75 4 63 2.39e-11 60.5
Msa0203420 AT2G40350.1 45.000 60 33 0 19 78 67 126 2.62e-11 59.7
Msa0203420 AT5G61590.1 50.667 75 35 2 4 77 93 166 3.18e-11 60.5
Msa0203420 AT5G07310.1 52.632 57 27 0 19 75 92 148 5.58e-11 60.5
Msa0203420 AT1G53170.1 58.929 56 23 0 19 74 31 86 7.74e-11 59.3

Find 54 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCCGAAAATAACCCATTT+TGG 0.203495 2_1:+27229751 None:intergenic
TCTTCTACATAATCAAAATT+TGG 0.208962 2_1:+27229648 None:intergenic
CATATTCTCTGGCGGCTATT+TGG 0.218544 2_1:+27230077 None:intergenic
GATTGTGACTCCAACCAAAA+TGG 0.275786 2_1:-27229765 Msa0203420:CDS
CAAATAGCCGCCAGAGAATA+TGG 0.302714 2_1:-27230076 Msa0203420:CDS
GCAATGTACGGAGGATCATT+AGG 0.343200 2_1:+27229963 None:intergenic
GTTGGGTAACTCTATGTTCC+CGG 0.345019 2_1:-27229712 Msa0203420:CDS
GACAACAACATTGTTGTCTA+TGG 0.361330 2_1:-27229829 Msa0203420:CDS
GGTTGAAACACCGTCATTAT+CGG 0.379628 2_1:-27229859 Msa0203420:CDS
TAATCAAAATTTGGCATCTC+TGG 0.382008 2_1:+27229657 None:intergenic
AATGATCCTCCGTACATTGC+CGG 0.390801 2_1:-27229960 Msa0203420:CDS
CTTAGAAATTCCACAAGAAC+AGG 0.404422 2_1:+27229598 None:intergenic
TTGACCCGAATTAGCAAAAC+TGG 0.404479 2_1:+27229896 None:intergenic
GAATGCACGTGCCGCCTTGA+CGG 0.412361 2_1:+27230034 None:intergenic
GAGGAGTAAGGAAGAGGAAG+TGG 0.415699 2_1:-27230127 Msa0203420:CDS
TGTTTCAACCGGAGTGATAA+CGG 0.428263 2_1:+27229872 None:intergenic
GTTTCAACCGGAGTGATAAC+GGG 0.438724 2_1:+27229873 None:intergenic
GATAATGACGGTGTTTCAAC+CGG 0.443992 2_1:+27229861 None:intergenic
AGGAGTAAGGAAGAGGAAGT+GGG 0.462607 2_1:-27230126 Msa0203420:CDS
TGTATAGAGGAGTAAGGAAG+AGG 0.466663 2_1:-27230133 Msa0203420:CDS
AGTGATTCTTCGTTGTATAG+AGG 0.470837 2_1:-27230146 Msa0203420:CDS
AAATTCCACAAGAACAGGTC+TGG 0.472865 2_1:+27229603 None:intergenic
CAATGTACGGAGGATCATTA+GGG 0.477351 2_1:+27229964 None:intergenic
CTTCGTTGTATAGAGGAGTA+AGG 0.483395 2_1:-27230139 Msa0203420:CDS
ATTGTGACTCCAACCAAAAT+GGG 0.491350 2_1:-27229764 Msa0203420:CDS
GACCTTCCTCCGGCAATGTA+CGG 0.497655 2_1:+27229951 None:intergenic
TTGGGTAACTCTATGTTCCC+GGG 0.509339 2_1:-27229711 Msa0203420:CDS
ATGTGTCATGGACCTTCCTC+CGG 0.511011 2_1:+27229941 None:intergenic
AGAAGAGAACATGGATGGGT+TGG 0.522656 2_1:-27229631 Msa0203420:CDS
AAGAACCTAACCATATTCTC+TGG 0.529372 2_1:+27230066 None:intergenic
TAATTCCAGACCTGTTCTTG+TGG 0.539165 2_1:-27229608 Msa0203420:CDS
TATGTAGAAGAGAACATGGA+TGG 0.543112 2_1:-27229636 Msa0203420:CDS
CTCCGTACATTGCCGGAGGA+AGG 0.543614 2_1:-27229953 Msa0203420:CDS
GGAGTAAGGAAGAGGAAGTG+GGG 0.557751 2_1:-27230125 Msa0203420:CDS
TTCTTATGACTCAGCCGTCA+AGG 0.561609 2_1:-27230048 Msa0203420:CDS
TGATTATGTAGAAGAGAACA+TGG 0.563898 2_1:-27229640 Msa0203420:CDS
AAATATGGTGAAATCAAATG+TGG 0.568157 2_1:-27230189 None:intergenic
TCCTACTCTATCTGATGTGA+CGG 0.572229 2_1:-27229796 Msa0203420:CDS
GGGTCAACCCGTTATCACTC+CGG 0.598707 2_1:-27229880 Msa0203420:CDS
AGCCGCCAGAGAATATGGTT+AGG 0.602773 2_1:-27230071 Msa0203420:CDS
ATTAGCAAAACTGGCTGCCG+CGG 0.608001 2_1:+27229905 None:intergenic
CTTAATCTCAGAATGTGTCA+TGG 0.609312 2_1:+27229929 None:intergenic
ATGTAGAAGAGAACATGGAT+GGG 0.618316 2_1:-27229635 Msa0203420:CDS
ACATCAGATAGAGTAGGAGA+CGG 0.634465 2_1:+27229801 None:intergenic
TGAAACACCGTCATTATCGG+AGG 0.635747 2_1:-27229856 Msa0203420:CDS
AACCTAACCATATTCTCTGG+CGG 0.652177 2_1:+27230069 None:intergenic
GGCGGCACGTGCATTCGACG+CGG 0.663263 2_1:-27230027 Msa0203420:CDS
GAAACACCGTCATTATCGGA+GGG 0.675798 2_1:-27229855 Msa0203420:CDS
GATCCTCCGTACATTGCCGG+AGG 0.683873 2_1:-27229957 Msa0203420:CDS
ACCGTCACATCAGATAGAGT+AGG 0.686967 2_1:+27229795 None:intergenic
CTTCCTCCGGCAATGTACGG+AGG 0.695791 2_1:+27229954 None:intergenic
ACATTCTGAGATTAAGACCG+CGG 0.707591 2_1:-27229922 Msa0203420:CDS
GTCGTGCCCTCCGATAATGA+CGG 0.715815 2_1:+27229849 None:intergenic
TTATGACTCAGCCGTCAAGG+CGG 0.758404 2_1:-27230045 Msa0203420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTCTACATAATCAAAATT+TGG + chr2_1:27230139-27230158 None:intergenic 20.0%
!!! CAACCAAAATGGGTTATTTT+CGG - chr2_1:27230030-27230049 Msa0203420:CDS 30.0%
!! GTTATTTTCGGACATGTTTT+CGG - chr2_1:27230042-27230061 Msa0203420:CDS 30.0%
TAATCAAAATTTGGCATCTC+TGG + chr2_1:27230130-27230149 None:intergenic 30.0%
TGATTATGTAGAAGAGAACA+TGG - chr2_1:27230144-27230163 Msa0203420:CDS 30.0%
AAATGTGGAAAAAACTGCAG+CGG - chr2_1:27229610-27229629 Msa0203420:CDS 35.0%
AGTGATTCTTCGTTGTATAG+AGG - chr2_1:27229638-27229657 Msa0203420:CDS 35.0%
AAGAACCTAACCATATTCTC+TGG + chr2_1:27229721-27229740 None:intergenic 35.0%
CTTAATCTCAGAATGTGTCA+TGG + chr2_1:27229858-27229877 None:intergenic 35.0%
GACAACAACATTGTTGTCTA+TGG - chr2_1:27229955-27229974 Msa0203420:CDS 35.0%
ATTGTGACTCCAACCAAAAT+GGG - chr2_1:27230020-27230039 Msa0203420:CDS 35.0%
!! CGAAAATAACCCATTTTGGT+TGG + chr2_1:27230032-27230051 None:intergenic 35.0%
! TGTCCGAAAATAACCCATTT+TGG + chr2_1:27230036-27230055 None:intergenic 35.0%
CACAAAAATCATCAAAACCC+GGG + chr2_1:27230093-27230112 None:intergenic 35.0%
CCACAAAAATCATCAAAACC+CGG + chr2_1:27230094-27230113 None:intergenic 35.0%
TATGTAGAAGAGAACATGGA+TGG - chr2_1:27230148-27230167 Msa0203420:CDS 35.0%
ATGTAGAAGAGAACATGGAT+GGG - chr2_1:27230149-27230168 Msa0203420:CDS 35.0%
CTTCGTTGTATAGAGGAGTA+AGG - chr2_1:27229645-27229664 Msa0203420:CDS 40.0%
TGTATAGAGGAGTAAGGAAG+AGG - chr2_1:27229651-27229670 Msa0203420:CDS 40.0%
AACCTAACCATATTCTCTGG+CGG + chr2_1:27229718-27229737 None:intergenic 40.0%
! ATGTTTTGCTTACGTGGAAG+TGG - chr2_1:27229782-27229801 Msa0203420:CDS 40.0%
CAATGTACGGAGGATCATTA+GGG + chr2_1:27229823-27229842 None:intergenic 40.0%
!! ACATTCTGAGATTAAGACCG+CGG - chr2_1:27229862-27229881 Msa0203420:CDS 40.0%
TTGACCCGAATTAGCAAAAC+TGG + chr2_1:27229891-27229910 None:intergenic 40.0%
TGTTTCAACCGGAGTGATAA+CGG + chr2_1:27229915-27229934 None:intergenic 40.0%
GATAATGACGGTGTTTCAAC+CGG + chr2_1:27229926-27229945 None:intergenic 40.0%
GGTTGAAACACCGTCATTAT+CGG - chr2_1:27229925-27229944 Msa0203420:CDS 40.0%
ACATCAGATAGAGTAGGAGA+CGG + chr2_1:27229986-27230005 None:intergenic 40.0%
TCCTACTCTATCTGATGTGA+CGG - chr2_1:27229988-27230007 Msa0203420:CDS 40.0%
GATTGTGACTCCAACCAAAA+TGG - chr2_1:27230019-27230038 Msa0203420:CDS 40.0%
! ATGTTTTCGGAAACTGGGTT+GGG - chr2_1:27230055-27230074 Msa0203420:CDS 40.0%
!! CCGGGTTTTGATGATTTTTG+TGG - chr2_1:27230091-27230110 Msa0203420:CDS 40.0%
TAATTCCAGACCTGTTCTTG+TGG - chr2_1:27230176-27230195 Msa0203420:CDS 40.0%
AAATTCCACAAGAACAGGTC+TGG + chr2_1:27230184-27230203 None:intergenic 40.0%
AGGAGTAAGGAAGAGGAAGT+GGG - chr2_1:27229658-27229677 Msa0203420:CDS 45.0%
CATATTCTCTGGCGGCTATT+TGG + chr2_1:27229710-27229729 None:intergenic 45.0%
CAAATAGCCGCCAGAGAATA+TGG - chr2_1:27229708-27229727 Msa0203420:CDS 45.0%
TTCTTATGACTCAGCCGTCA+AGG - chr2_1:27229736-27229755 Msa0203420:CDS 45.0%
GCAATGTACGGAGGATCATT+AGG + chr2_1:27229824-27229843 None:intergenic 45.0%
AATGATCCTCCGTACATTGC+CGG - chr2_1:27229824-27229843 Msa0203420:CDS 45.0%
! GGCAGCCAGTTTTGCTAATT+CGG - chr2_1:27229883-27229902 Msa0203420:CDS 45.0%
! GCAGCCAGTTTTGCTAATTC+GGG - chr2_1:27229884-27229903 Msa0203420:CDS 45.0%
GTTTCAACCGGAGTGATAAC+GGG + chr2_1:27229914-27229933 None:intergenic 45.0%
TGAAACACCGTCATTATCGG+AGG - chr2_1:27229928-27229947 Msa0203420:CDS 45.0%
GAAACACCGTCATTATCGGA+GGG - chr2_1:27229929-27229948 Msa0203420:CDS 45.0%
ACCGTCACATCAGATAGAGT+AGG + chr2_1:27229992-27230011 None:intergenic 45.0%
! TCGGACATGTTTTCGGAAAC+TGG - chr2_1:27230049-27230068 Msa0203420:CDS 45.0%
! CGGACATGTTTTCGGAAACT+GGG - chr2_1:27230050-27230069 Msa0203420:CDS 45.0%
! CATGTTTTCGGAAACTGGGT+TGG - chr2_1:27230054-27230073 Msa0203420:CDS 45.0%
GTTGGGTAACTCTATGTTCC+CGG - chr2_1:27230072-27230091 Msa0203420:CDS 45.0%
TTGGGTAACTCTATGTTCCC+GGG - chr2_1:27230073-27230092 Msa0203420:CDS 45.0%
AGAAGAGAACATGGATGGGT+TGG - chr2_1:27230153-27230172 Msa0203420:CDS 45.0%
GAGGAGTAAGGAAGAGGAAG+TGG - chr2_1:27229657-27229676 Msa0203420:CDS 50.0%
GGAGTAAGGAAGAGGAAGTG+GGG - chr2_1:27229659-27229678 Msa0203420:CDS 50.0%
AGCCGCCAGAGAATATGGTT+AGG - chr2_1:27229713-27229732 Msa0203420:CDS 50.0%
TTATGACTCAGCCGTCAAGG+CGG - chr2_1:27229739-27229758 Msa0203420:CDS 50.0%
! GCGGCTATGTTTTGCTTACG+TGG - chr2_1:27229776-27229795 Msa0203420:CDS 50.0%
ATGTGTCATGGACCTTCCTC+CGG + chr2_1:27229846-27229865 None:intergenic 50.0%
ATTAGCAAAACTGGCTGCCG+CGG + chr2_1:27229882-27229901 None:intergenic 50.0%
GACCTTCCTCCGGCAATGTA+CGG + chr2_1:27229836-27229855 None:intergenic 55.0%
GGGTCAACCCGTTATCACTC+CGG - chr2_1:27229904-27229923 Msa0203420:CDS 55.0%
GTCGTGCCCTCCGATAATGA+CGG + chr2_1:27229938-27229957 None:intergenic 55.0%
GAATGCACGTGCCGCCTTGA+CGG + chr2_1:27229753-27229772 None:intergenic 60.0%
GATCCTCCGTACATTGCCGG+AGG - chr2_1:27229827-27229846 Msa0203420:CDS 60.0%
CTTCCTCCGGCAATGTACGG+AGG + chr2_1:27229833-27229852 None:intergenic 60.0%
CTCCGTACATTGCCGGAGGA+AGG - chr2_1:27229831-27229850 Msa0203420:CDS 60.0%
GGCGGCACGTGCATTCGACG+CGG - chr2_1:27229757-27229776 Msa0203420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 27229599 27230207 27229599 ID=Msa0203420;Name=Msa0203420
chr2_1 mRNA 27229599 27230207 27229599 ID=Msa0203420-mRNA-1;Parent=Msa0203420;Name=Msa0203420-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|202
chr2_1 exon 27229599 27230207 27229599 ID=Msa0203420-mRNA-1:exon:10100;Parent=Msa0203420-mRNA-1
chr2_1 CDS 27229599 27230207 27229599 ID=Msa0203420-mRNA-1:cds;Parent=Msa0203420-mRNA-1
Gene Sequence

>Msa0203420

ATGGTGAAATCAAATGTGGAAAAAACTGCAGCGGAAAGAAGTGATTCTTCGTTGTATAGAGGAGTAAGGAAGAGGAAGTGGGGAAAATATGTGTCTGAAATCAGACTACCAAATAGCCGCCAGAGAATATGGTTAGGTTCTTATGACTCAGCCGTCAAGGCGGCACGTGCATTCGACGCGGCTATGTTTTGCTTACGTGGAAGTGGTGCTAAGTTTAATTTCCCTAATGATCCTCCGTACATTGCCGGAGGAAGGTCCATGACACATTCTGAGATTAAGACCGCGGCAGCCAGTTTTGCTAATTCGGGTCAACCCGTTATCACTCCGGTTGAAACACCGTCATTATCGGAGGGCACGACAACAACATTGTTGTCTATGGAGCTGCCGTCTCCTACTCTATCTGATGTGACGGTTCAGACAGATTGTGACTCCAACCAAAATGGGTTATTTTCGGACATGTTTTCGGAAACTGGGTTGGGTAACTCTATGTTCCCGGGTTTTGATGATTTTTGTGGTGATTTTTTCGTGCCAGAGATGCCAAATTTTGATTATGTAGAAGAGAACATGGATGGGTTGGTAATTCCAGACCTGTTCTTGTGGAATTTCTAA
Protein sequence

>Msa0203420

MVKSNVEKTAAERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAVKAARAFDAAMFCLRGSGAKFNFPNDPPYIAGGRSMTHSEIKTAAASFANSGQPVITPVETPSLSEGTTTTLLSMELPSPTLSDVTVQTDCDSNQNGLFSDMFSETGLGNSMFPGFDDFCGDFFVPEMPNFDYVEENMDGLVIPDLFLWNF*