Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208450 | KEH29095.1 | 66.667 | 69 | 7 | 1 | 8 | 76 | 3 | 55 | 8.64e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208450 | A0A072UT77 | 66.667 | 69 | 7 | 1 | 8 | 76 | 3 | 55 | 4.13e-18 | 79.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208450 | Msa0240420 | 0.809244 | 2.082276e-50 | -8.615850e-47 |
| Msa0208450 | Msa0916690 | 0.813561 | 2.405182e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGTTGTTTCTTCATTA+AGG | 0.179870 | 2_1:+43732514 | Msa0208450:CDS |
| TGCTCGTGTCATGTTAATTT+TGG | 0.221589 | 2_1:+43733547 | Msa0208450:CDS |
| TTGTGGTTGCAATTGCTAAT+TGG | 0.286210 | 2_1:+43733732 | Msa0208450:CDS |
| TGTTGTTGTTTCTTCATTAA+GGG | 0.318612 | 2_1:+43732515 | Msa0208450:CDS |
| TGTGGTTGCAATTGCTAATT+GGG | 0.332288 | 2_1:+43733733 | Msa0208450:CDS |
| GAGGCTATGGGTTGGAGAAC+AGG | 0.372803 | 2_1:-43732182 | None:intergenic |
| CCCCATCATTGAATTCGACT+TGG | 0.426428 | 2_1:+43733702 | Msa0208450:CDS |
| CATTGTGTTGGCTAGGCATA+AGG | 0.440217 | 2_1:+43733661 | Msa0208450:CDS |
| TTCCAAGTCGAATTCAATGA+TGG | 0.475912 | 2_1:-43733704 | None:intergenic |
| AAAATTAACATGACACGAGC+AGG | 0.507063 | 2_1:-43733545 | None:intergenic |
| TTTAGTTCACTTGAAAGCTT+AGG | 0.515741 | 2_1:-43732279 | None:intergenic |
| GACTTGACATTGTGTTGGCT+AGG | 0.523648 | 2_1:+43733654 | Msa0208450:CDS |
| TCCAAGTCGAATTCAATGAT+GGG | 0.546000 | 2_1:-43733703 | None:intergenic |
| GAAAGAAAATGAGCTTCATA+TGG | 0.555483 | 2_1:+43733514 | Msa0208450:CDS |
| TATTAGACTTGACATTGTGT+TGG | 0.561577 | 2_1:+43733649 | Msa0208450:CDS |
| AACAACAACAATAGCAAAGG+AGG | 0.581643 | 2_1:-43732502 | None:intergenic |
| TTCGACTTGGAATAGTATTG+TGG | 0.613034 | 2_1:+43733715 | Msa0208450:CDS |
| GTTGGAGAACAGGAAGAAGA+AGG | 0.613725 | 2_1:-43732172 | None:intergenic |
| AGAAACAACAACAATAGCAA+AGG | 0.622657 | 2_1:-43732505 | None:intergenic |
| ACTTGAAAGCTTAGGCGATG+AGG | 0.630085 | 2_1:-43732271 | None:intergenic |
| CCAAGTCGAATTCAATGATG+GGG | 0.656776 | 2_1:-43733702 | None:intergenic |
| GCGTGAGAGAGATAGAGATG+TGG | 0.657361 | 2_1:-43732136 | None:intergenic |
| TAGCCGCTGTGATCACCGAT+CGG | 0.658975 | 2_1:+43732224 | Msa0208450:five_prime_UTR |
| CAAAGGAGGACATTCTTATG+CGG | 0.693481 | 2_1:-43732488 | None:intergenic |
| TTTCCGATCGGTGATCACAG+CGG | 0.718730 | 2_1:-43732227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTAAACATAAATGA+TGG | - | chr2_1:43732563-43732582 | None:intergenic | 10.0% |
| !! | TAAAAAATGAAAAAAAGTTA+GGG | - | chr2_1:43732612-43732631 | None:intergenic | 10.0% |
| !! | TTAAAAAATGAAAAAAAGTT+AGG | - | chr2_1:43732613-43732632 | None:intergenic | 10.0% |
| !! | TTAAGATTGAAATTAAAAAT+TGG | - | chr2_1:43732727-43732746 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTAAAATTCTAA+AGG | - | chr2_1:43732759-43732778 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGTATAGAA+AGG | + | chr2_1:43732880-43732899 | Msa0208450:intron | 10.0% |
| !! | AGGTTTATTATATTATATTA+AGG | + | chr2_1:43733221-43733240 | Msa0208450:intron | 10.0% |
| !! | TTTATTATATTATATTAAGG+TGG | + | chr2_1:43733224-43733243 | Msa0208450:intron | 10.0% |
| !!! | ATAATTTTAAACATAAATGA+TGG | - | chr2_1:43732563-43732582 | None:intergenic | 10.0% |
| !! | TAAAAAATGAAAAAAAGTTA+GGG | - | chr2_1:43732612-43732631 | None:intergenic | 10.0% |
| !! | TTAAAAAATGAAAAAAAGTT+AGG | - | chr2_1:43732613-43732632 | None:intergenic | 10.0% |
| !! | TTAAGATTGAAATTAAAAAT+TGG | - | chr2_1:43732727-43732746 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTAAAATTCTAA+AGG | - | chr2_1:43732759-43732778 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGTATAGAA+AGG | + | chr2_1:43732880-43732899 | Msa0208450:intron | 10.0% |
| !! | AGGTTTATTATATTATATTA+AGG | + | chr2_1:43733221-43733240 | Msa0208450:intron | 10.0% |
| !! | TTTATTATATTATATTAAGG+TGG | + | chr2_1:43733224-43733243 | Msa0208450:intron | 10.0% |
| !! | ATATTTATTCAAACTGTATA+TGG | + | chr2_1:43733149-43733168 | Msa0208450:intron | 15.0% |
| !! | GAGTAATTGTTTATTTAAAT+TGG | + | chr2_1:43733179-43733198 | Msa0208450:intron | 15.0% |
| !! | AAGGAACTTATATATATAAA+TGG | + | chr2_1:43733607-43733626 | Msa0208450:intron | 15.0% |
| !! | ATATTTATTCAAACTGTATA+TGG | + | chr2_1:43733149-43733168 | Msa0208450:intron | 15.0% |
| !! | GAGTAATTGTTTATTTAAAT+TGG | + | chr2_1:43733179-43733198 | Msa0208450:intron | 15.0% |
| !! | AAGGAACTTATATATATAAA+TGG | + | chr2_1:43733607-43733626 | Msa0208450:intron | 15.0% |
| !! | AAACCAAAAATATGAAGAAA+AGG | - | chr2_1:43732386-43732405 | None:intergenic | 20.0% |
| !! | ATACATTCTATCATTAGAAT+GGG | - | chr2_1:43732647-43732666 | None:intergenic | 20.0% |
| !! | AATACATTCTATCATTAGAA+TGG | - | chr2_1:43732648-43732667 | None:intergenic | 20.0% |
| !!! | TTGTTGAGTTTGATTAATTT+TGG | + | chr2_1:43732777-43732796 | Msa0208450:intron | 20.0% |
| !! | GTAATTGTGTAATTAGTATA+AGG | + | chr2_1:43733201-43733220 | Msa0208450:intron | 20.0% |
| !! | AAACCAAAAATATGAAGAAA+AGG | - | chr2_1:43732386-43732405 | None:intergenic | 20.0% |
| !! | ATACATTCTATCATTAGAAT+GGG | - | chr2_1:43732647-43732666 | None:intergenic | 20.0% |
| !! | AATACATTCTATCATTAGAA+TGG | - | chr2_1:43732648-43732667 | None:intergenic | 20.0% |
| !!! | TTGTTGAGTTTGATTAATTT+TGG | + | chr2_1:43732777-43732796 | Msa0208450:intron | 20.0% |
| !! | GTAATTGTGTAATTAGTATA+AGG | + | chr2_1:43733201-43733220 | Msa0208450:intron | 20.0% |
| ! | TACCATGATAGAGAAAAAAT+GGG | - | chr2_1:43732336-43732355 | None:intergenic | 25.0% |
| ! | TTACCATGATAGAGAAAAAA+TGG | - | chr2_1:43732337-43732356 | None:intergenic | 25.0% |
| ! | AAAATATGAAGAAAAGGAAG+AGG | - | chr2_1:43732380-43732399 | None:intergenic | 25.0% |
| !! | CTTCCTTTTCTTCATATTTT+TGG | + | chr2_1:43732380-43732399 | Msa0208450:intron | 25.0% |
| !! | GTTTTCAGTCAAAAATGAAA+TGG | - | chr2_1:43732410-43732429 | None:intergenic | 25.0% |
| !!! | TTGTTGTTGTTTCTTCATTA+AGG | + | chr2_1:43732514-43732533 | Msa0208450:CDS | 25.0% |
| !!! | TGTTGTTGTTTCTTCATTAA+GGG | + | chr2_1:43732515-43732534 | Msa0208450:CDS | 25.0% |
| ! | TTATGTCTCAACAAGTAAAA+AGG | + | chr2_1:43732700-43732719 | Msa0208450:intron | 25.0% |
| ! | TGATATTTATCTTGTGATGT+TGG | + | chr2_1:43733251-43733270 | Msa0208450:intron | 25.0% |
| ! | AAAGTTAGATTTGGATTTGT+TGG | + | chr2_1:43733282-43733301 | Msa0208450:intron | 25.0% |
| !!! | GTTTCCTTTTTTCAATTCAA+CGG | + | chr2_1:43733429-43733448 | Msa0208450:intron | 25.0% |
| ! | ATAACCGTTGAATTGAAAAA+AGG | - | chr2_1:43733436-43733455 | None:intergenic | 25.0% |
| !!! | TCATGGTTAATTTTTGTTTC+AGG | + | chr2_1:43733475-43733494 | Msa0208450:intron | 25.0% |
| ! | TACCATGATAGAGAAAAAAT+GGG | - | chr2_1:43732336-43732355 | None:intergenic | 25.0% |
| ! | TTACCATGATAGAGAAAAAA+TGG | - | chr2_1:43732337-43732356 | None:intergenic | 25.0% |
| ! | AAAATATGAAGAAAAGGAAG+AGG | - | chr2_1:43732380-43732399 | None:intergenic | 25.0% |
| !! | CTTCCTTTTCTTCATATTTT+TGG | + | chr2_1:43732380-43732399 | Msa0208450:intron | 25.0% |
| !! | GTTTTCAGTCAAAAATGAAA+TGG | - | chr2_1:43732410-43732429 | None:intergenic | 25.0% |
| !!! | TTGTTGTTGTTTCTTCATTA+AGG | + | chr2_1:43732514-43732533 | Msa0208450:CDS | 25.0% |
| !!! | TGTTGTTGTTTCTTCATTAA+GGG | + | chr2_1:43732515-43732534 | Msa0208450:CDS | 25.0% |
| ! | TTATGTCTCAACAAGTAAAA+AGG | + | chr2_1:43732700-43732719 | Msa0208450:intron | 25.0% |
| ! | TGATATTTATCTTGTGATGT+TGG | + | chr2_1:43733251-43733270 | Msa0208450:intron | 25.0% |
| ! | AAAGTTAGATTTGGATTTGT+TGG | + | chr2_1:43733282-43733301 | Msa0208450:intron | 25.0% |
| !!! | GTTTCCTTTTTTCAATTCAA+CGG | + | chr2_1:43733429-43733448 | Msa0208450:intron | 25.0% |
| ! | ATAACCGTTGAATTGAAAAA+AGG | - | chr2_1:43733436-43733455 | None:intergenic | 25.0% |
| !!! | TCATGGTTAATTTTTGTTTC+AGG | + | chr2_1:43733475-43733494 | Msa0208450:intron | 25.0% |
| GAAATAACGTCAAAAAGAAG+AGG | - | chr2_1:43732204-43732223 | None:intergenic | 30.0% | |
| ! | TTTAGTTCACTTGAAAGCTT+AGG | - | chr2_1:43732282-43732301 | None:intergenic | 30.0% |
| TTCATGTTTCAGAGCAAAAA+TGG | - | chr2_1:43732446-43732465 | None:intergenic | 30.0% | |
| AGAAACAACAACAATAGCAA+AGG | - | chr2_1:43732508-43732527 | None:intergenic | 30.0% | |
| GGTTTCAAAAATAGAGATTG+GGG | - | chr2_1:43732591-43732610 | None:intergenic | 30.0% | |
| GGGTTTCAAAAATAGAGATT+GGG | - | chr2_1:43732592-43732611 | None:intergenic | 30.0% | |
| AGGGTTTCAAAAATAGAGAT+TGG | - | chr2_1:43732593-43732612 | None:intergenic | 30.0% | |
| TTGTTGAGACATAACTAAGT+AGG | - | chr2_1:43732694-43732713 | None:intergenic | 30.0% | |
| ! | TCTTGAAGTGATGCTTTTAT+TGG | + | chr2_1:43733027-43733046 | Msa0208450:intron | 30.0% |
| ! | CTTGAAGTGATGCTTTTATT+GGG | + | chr2_1:43733028-43733047 | Msa0208450:intron | 30.0% |
| AAATACTCTCAATCATGTCA+TGG | - | chr2_1:43733100-43733119 | None:intergenic | 30.0% | |
| !! | ATGACATGATTGAGAGTATT+TGG | + | chr2_1:43733099-43733118 | Msa0208450:intron | 30.0% |
| !! | TGACATGATTGAGAGTATTT+GGG | + | chr2_1:43733100-43733119 | Msa0208450:intron | 30.0% |
| TTTGGGGAAATAGATGTTAA+AGG | + | chr2_1:43733117-43733136 | Msa0208450:intron | 30.0% | |
| !! | TTTGGATTTGTTGGAAACTT+TGG | + | chr2_1:43733291-43733310 | Msa0208450:intron | 30.0% |
| ! | GAGAATTGGAATTGATTTCA+TGG | + | chr2_1:43733458-43733477 | Msa0208450:intron | 30.0% |
| GAAAGAAAATGAGCTTCATA+TGG | + | chr2_1:43733514-43733533 | Msa0208450:CDS | 30.0% | |
| !! | TCATGTTAATTTTGGTGGTA+AGG | + | chr2_1:43733555-43733574 | Msa0208450:CDS | 30.0% |
| TGGTGAGCTTAATATGTAAA+AGG | + | chr2_1:43733588-43733607 | Msa0208450:intron | 30.0% | |
| TATTAGACTTGACATTGTGT+TGG | + | chr2_1:43733649-43733668 | Msa0208450:CDS | 30.0% | |
| GAAATAACGTCAAAAAGAAG+AGG | - | chr2_1:43732204-43732223 | None:intergenic | 30.0% | |
| ! | TTTAGTTCACTTGAAAGCTT+AGG | - | chr2_1:43732282-43732301 | None:intergenic | 30.0% |
| TTCATGTTTCAGAGCAAAAA+TGG | - | chr2_1:43732446-43732465 | None:intergenic | 30.0% | |
| AGAAACAACAACAATAGCAA+AGG | - | chr2_1:43732508-43732527 | None:intergenic | 30.0% | |
| GGTTTCAAAAATAGAGATTG+GGG | - | chr2_1:43732591-43732610 | None:intergenic | 30.0% | |
| GGGTTTCAAAAATAGAGATT+GGG | - | chr2_1:43732592-43732611 | None:intergenic | 30.0% | |
| AGGGTTTCAAAAATAGAGAT+TGG | - | chr2_1:43732593-43732612 | None:intergenic | 30.0% | |
| TTGTTGAGACATAACTAAGT+AGG | - | chr2_1:43732694-43732713 | None:intergenic | 30.0% | |
| ! | TCTTGAAGTGATGCTTTTAT+TGG | + | chr2_1:43733027-43733046 | Msa0208450:intron | 30.0% |
| ! | CTTGAAGTGATGCTTTTATT+GGG | + | chr2_1:43733028-43733047 | Msa0208450:intron | 30.0% |
| AAATACTCTCAATCATGTCA+TGG | - | chr2_1:43733100-43733119 | None:intergenic | 30.0% | |
| !! | ATGACATGATTGAGAGTATT+TGG | + | chr2_1:43733099-43733118 | Msa0208450:intron | 30.0% |
| !! | TGACATGATTGAGAGTATTT+GGG | + | chr2_1:43733100-43733119 | Msa0208450:intron | 30.0% |
| TTTGGGGAAATAGATGTTAA+AGG | + | chr2_1:43733117-43733136 | Msa0208450:intron | 30.0% | |
| !! | TTTGGATTTGTTGGAAACTT+TGG | + | chr2_1:43733291-43733310 | Msa0208450:intron | 30.0% |
| ! | GAGAATTGGAATTGATTTCA+TGG | + | chr2_1:43733458-43733477 | Msa0208450:intron | 30.0% |
| GAAAGAAAATGAGCTTCATA+TGG | + | chr2_1:43733514-43733533 | Msa0208450:CDS | 30.0% | |
| !! | TCATGTTAATTTTGGTGGTA+AGG | + | chr2_1:43733555-43733574 | Msa0208450:CDS | 30.0% |
| TGGTGAGCTTAATATGTAAA+AGG | + | chr2_1:43733588-43733607 | Msa0208450:intron | 30.0% | |
| TATTAGACTTGACATTGTGT+TGG | + | chr2_1:43733649-43733668 | Msa0208450:CDS | 30.0% | |
| !! | ATTGTCTTTGCTTTTCCGAT+CGG | - | chr2_1:43732242-43732261 | None:intergenic | 35.0% |
| !!! | CACCCATTTTTTCTCTATCA+TGG | + | chr2_1:43732331-43732350 | Msa0208450:five_prime_UTR | 35.0% |
| GAAGAAAAGGAAGAGGATAT+TGG | - | chr2_1:43732373-43732392 | None:intergenic | 35.0% | |
| AACAACAACAATAGCAAAGG+AGG | - | chr2_1:43732505-43732524 | None:intergenic | 35.0% | |
| ! | CGAGTTAGTTTAAGTTACCT+TGG | + | chr2_1:43732905-43732924 | Msa0208450:intron | 35.0% |
| TTAGAAGTAGGAATGTAGGA+TGG | + | chr2_1:43733059-43733078 | Msa0208450:intron | 35.0% | |
| !! | GACATGATTGAGAGTATTTG+GGG | + | chr2_1:43733101-43733120 | Msa0208450:intron | 35.0% |
| GTGCTCTTGAAAGTTAGATT+TGG | + | chr2_1:43733273-43733292 | Msa0208450:intron | 35.0% | |
| ! | GTTGGAAACTTTGGTGTATA+TGG | + | chr2_1:43733300-43733319 | Msa0208450:intron | 35.0% |
| AGGGATATTATGGTTCATCA+TGG | - | chr2_1:43733374-43733393 | None:intergenic | 35.0% | |
| TTCAACGGTTATGTGAGAAT+TGG | + | chr2_1:43733444-43733463 | Msa0208450:intron | 35.0% | |
| AAAATTAACATGACACGAGC+AGG | - | chr2_1:43733548-43733567 | None:intergenic | 35.0% | |
| ! | TGCTCGTGTCATGTTAATTT+TGG | + | chr2_1:43733547-43733566 | Msa0208450:CDS | 35.0% |
| ! | TCGTGTCATGTTAATTTTGG+TGG | + | chr2_1:43733550-43733569 | Msa0208450:CDS | 35.0% |
| GGTGGTAAGGTAAATTTAGT+TGG | + | chr2_1:43733568-43733587 | Msa0208450:intron | 35.0% | |
| TCCAAGTCGAATTCAATGAT+GGG | - | chr2_1:43733706-43733725 | None:intergenic | 35.0% | |
| TTCCAAGTCGAATTCAATGA+TGG | - | chr2_1:43733707-43733726 | None:intergenic | 35.0% | |
| !! | TTCGACTTGGAATAGTATTG+TGG | + | chr2_1:43733715-43733734 | Msa0208450:CDS | 35.0% |
| TTGTGGTTGCAATTGCTAAT+TGG | + | chr2_1:43733732-43733751 | Msa0208450:CDS | 35.0% | |
| TGTGGTTGCAATTGCTAATT+GGG | + | chr2_1:43733733-43733752 | Msa0208450:CDS | 35.0% | |
| !! | ATTGTCTTTGCTTTTCCGAT+CGG | - | chr2_1:43732242-43732261 | None:intergenic | 35.0% |
| !!! | CACCCATTTTTTCTCTATCA+TGG | + | chr2_1:43732331-43732350 | Msa0208450:five_prime_UTR | 35.0% |
| GAAGAAAAGGAAGAGGATAT+TGG | - | chr2_1:43732373-43732392 | None:intergenic | 35.0% | |
| AACAACAACAATAGCAAAGG+AGG | - | chr2_1:43732505-43732524 | None:intergenic | 35.0% | |
| ! | CGAGTTAGTTTAAGTTACCT+TGG | + | chr2_1:43732905-43732924 | Msa0208450:intron | 35.0% |
| TTAGAAGTAGGAATGTAGGA+TGG | + | chr2_1:43733059-43733078 | Msa0208450:intron | 35.0% | |
| !! | GACATGATTGAGAGTATTTG+GGG | + | chr2_1:43733101-43733120 | Msa0208450:intron | 35.0% |
| GTGCTCTTGAAAGTTAGATT+TGG | + | chr2_1:43733273-43733292 | Msa0208450:intron | 35.0% | |
| ! | GTTGGAAACTTTGGTGTATA+TGG | + | chr2_1:43733300-43733319 | Msa0208450:intron | 35.0% |
| AGGGATATTATGGTTCATCA+TGG | - | chr2_1:43733374-43733393 | None:intergenic | 35.0% | |
| TTCAACGGTTATGTGAGAAT+TGG | + | chr2_1:43733444-43733463 | Msa0208450:intron | 35.0% | |
| AAAATTAACATGACACGAGC+AGG | - | chr2_1:43733548-43733567 | None:intergenic | 35.0% | |
| ! | TGCTCGTGTCATGTTAATTT+TGG | + | chr2_1:43733547-43733566 | Msa0208450:CDS | 35.0% |
| ! | TCGTGTCATGTTAATTTTGG+TGG | + | chr2_1:43733550-43733569 | Msa0208450:CDS | 35.0% |
| GGTGGTAAGGTAAATTTAGT+TGG | + | chr2_1:43733568-43733587 | Msa0208450:intron | 35.0% | |
| TCCAAGTCGAATTCAATGAT+GGG | - | chr2_1:43733706-43733725 | None:intergenic | 35.0% | |
| TTCCAAGTCGAATTCAATGA+TGG | - | chr2_1:43733707-43733726 | None:intergenic | 35.0% | |
| !! | TTCGACTTGGAATAGTATTG+TGG | + | chr2_1:43733715-43733734 | Msa0208450:CDS | 35.0% |
| TTGTGGTTGCAATTGCTAAT+TGG | + | chr2_1:43733732-43733751 | Msa0208450:CDS | 35.0% | |
| TGTGGTTGCAATTGCTAATT+GGG | + | chr2_1:43733733-43733752 | Msa0208450:CDS | 35.0% | |
| AAAAAGAAGAGGCTATGGGT+TGG | - | chr2_1:43732193-43732212 | None:intergenic | 40.0% | |
| CGTCAAAAAGAAGAGGCTAT+GGG | - | chr2_1:43732197-43732216 | None:intergenic | 40.0% | |
| ACGTCAAAAAGAAGAGGCTA+TGG | - | chr2_1:43732198-43732217 | None:intergenic | 40.0% | |
| CAAAGGAGGACATTCTTATG+CGG | - | chr2_1:43732491-43732510 | None:intergenic | 40.0% | |
| AACAATCTCAACAAGCTCCA+AGG | - | chr2_1:43732925-43732944 | None:intergenic | 40.0% | |
| TGGGATAACCTCTTAGAAGT+AGG | + | chr2_1:43733047-43733066 | Msa0208450:intron | 40.0% | |
| CCTACATTCCTACTTCTAAG+AGG | - | chr2_1:43733058-43733077 | None:intergenic | 40.0% | |
| CCTCTTAGAAGTAGGAATGT+AGG | + | chr2_1:43733055-43733074 | Msa0208450:intron | 40.0% | |
| ACGCTGTTCAAGGGATATTA+TGG | - | chr2_1:43733384-43733403 | None:intergenic | 40.0% | |
| CCAAGTCGAATTCAATGATG+GGG | - | chr2_1:43733705-43733724 | None:intergenic | 40.0% | |
| AAAAAGAAGAGGCTATGGGT+TGG | - | chr2_1:43732193-43732212 | None:intergenic | 40.0% | |
| CGTCAAAAAGAAGAGGCTAT+GGG | - | chr2_1:43732197-43732216 | None:intergenic | 40.0% | |
| ACGTCAAAAAGAAGAGGCTA+TGG | - | chr2_1:43732198-43732217 | None:intergenic | 40.0% | |
| CAAAGGAGGACATTCTTATG+CGG | - | chr2_1:43732491-43732510 | None:intergenic | 40.0% | |
| AACAATCTCAACAAGCTCCA+AGG | - | chr2_1:43732925-43732944 | None:intergenic | 40.0% | |
| TGGGATAACCTCTTAGAAGT+AGG | + | chr2_1:43733047-43733066 | Msa0208450:intron | 40.0% | |
| CCTACATTCCTACTTCTAAG+AGG | - | chr2_1:43733058-43733077 | None:intergenic | 40.0% | |
| CCTCTTAGAAGTAGGAATGT+AGG | + | chr2_1:43733055-43733074 | Msa0208450:intron | 40.0% | |
| ACGCTGTTCAAGGGATATTA+TGG | - | chr2_1:43733384-43733403 | None:intergenic | 40.0% | |
| CCAAGTCGAATTCAATGATG+GGG | - | chr2_1:43733705-43733724 | None:intergenic | 40.0% | |
| GTTGGAGAACAGGAAGAAGA+AGG | - | chr2_1:43732175-43732194 | None:intergenic | 45.0% | |
| ACTTGAAAGCTTAGGCGATG+AGG | - | chr2_1:43732274-43732293 | None:intergenic | 45.0% | |
| GATGATGTCACGCTGTTCAA+GGG | - | chr2_1:43733393-43733412 | None:intergenic | 45.0% | |
| ! | TGATGATGTCACGCTGTTCA+AGG | - | chr2_1:43733394-43733413 | None:intergenic | 45.0% |
| !! | GACTTGACATTGTGTTGGCT+AGG | + | chr2_1:43733654-43733673 | Msa0208450:CDS | 45.0% |
| !! | CATTGTGTTGGCTAGGCATA+AGG | + | chr2_1:43733661-43733680 | Msa0208450:CDS | 45.0% |
| CCCCATCATTGAATTCGACT+TGG | + | chr2_1:43733702-43733721 | Msa0208450:CDS | 45.0% | |
| GTTGGAGAACAGGAAGAAGA+AGG | - | chr2_1:43732175-43732194 | None:intergenic | 45.0% | |
| ACTTGAAAGCTTAGGCGATG+AGG | - | chr2_1:43732274-43732293 | None:intergenic | 45.0% | |
| GATGATGTCACGCTGTTCAA+GGG | - | chr2_1:43733393-43733412 | None:intergenic | 45.0% | |
| ! | TGATGATGTCACGCTGTTCA+AGG | - | chr2_1:43733394-43733413 | None:intergenic | 45.0% |
| !! | GACTTGACATTGTGTTGGCT+AGG | + | chr2_1:43733654-43733673 | Msa0208450:CDS | 45.0% |
| !! | CATTGTGTTGGCTAGGCATA+AGG | + | chr2_1:43733661-43733680 | Msa0208450:CDS | 45.0% |
| CCCCATCATTGAATTCGACT+TGG | + | chr2_1:43733702-43733721 | Msa0208450:CDS | 45.0% | |
| GCGTGAGAGAGATAGAGATG+TGG | - | chr2_1:43732139-43732158 | None:intergenic | 50.0% | |
| TTTCCGATCGGTGATCACAG+CGG | - | chr2_1:43732230-43732249 | None:intergenic | 50.0% | |
| GCGTGAGAGAGATAGAGATG+TGG | - | chr2_1:43732139-43732158 | None:intergenic | 50.0% | |
| TTTCCGATCGGTGATCACAG+CGG | - | chr2_1:43732230-43732249 | None:intergenic | 50.0% | |
| !! | GAGGCTATGGGTTGGAGAAC+AGG | - | chr2_1:43732185-43732204 | None:intergenic | 55.0% |
| TAGCCGCTGTGATCACCGAT+CGG | + | chr2_1:43732224-43732243 | Msa0208450:five_prime_UTR | 55.0% | |
| !! | GAGGCTATGGGTTGGAGAAC+AGG | - | chr2_1:43732185-43732204 | None:intergenic | 55.0% |
| TAGCCGCTGTGATCACCGAT+CGG | + | chr2_1:43732224-43732243 | Msa0208450:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 43732120 | 43733757 | 43732120 | ID=Msa0208450;Name=Msa0208450 |
| chr2_1 | mRNA | 43732120 | 43733757 | 43732120 | ID=Msa0208450-mRNA-1;Parent=Msa0208450;Name=Msa0208450-mRNA-1;_AED=0.28;_eAED=0.28;_QI=261|0.66|0.75|1|0.33|0.25|4|0|76 |
| chr2_1 | exon | 43732120 | 43732352 | 43732120 | ID=Msa0208450-mRNA-1:exon:12864;Parent=Msa0208450-mRNA-1 |
| chr2_1 | exon | 43732470 | 43732536 | 43732470 | ID=Msa0208450-mRNA-1:exon:12865;Parent=Msa0208450-mRNA-1 |
| chr2_1 | exon | 43733497 | 43733576 | 43733497 | ID=Msa0208450-mRNA-1:exon:12866;Parent=Msa0208450-mRNA-1 |
| chr2_1 | exon | 43733649 | 43733757 | 43733649 | ID=Msa0208450-mRNA-1:exon:12867;Parent=Msa0208450-mRNA-1 |
| chr2_1 | five_prime_UTR | 43732120 | 43732352 | 43732120 | ID=Msa0208450-mRNA-1:five_prime_utr;Parent=Msa0208450-mRNA-1 |
| chr2_1 | five_prime_UTR | 43732470 | 43732497 | 43732470 | ID=Msa0208450-mRNA-1:five_prime_utr;Parent=Msa0208450-mRNA-1 |
| chr2_1 | CDS | 43732498 | 43732536 | 43732498 | ID=Msa0208450-mRNA-1:cds;Parent=Msa0208450-mRNA-1 |
| chr2_1 | CDS | 43733497 | 43733576 | 43733497 | ID=Msa0208450-mRNA-1:cds;Parent=Msa0208450-mRNA-1 |
| chr2_1 | CDS | 43733649 | 43733757 | 43733649 | ID=Msa0208450-mRNA-1:cds;Parent=Msa0208450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
