Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240420 | XP_039686886.1 | 77.556 | 401 | 44 | 3 | 1 | 400 | 1 | 356 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240420 | sp|F4IW10|EFGM2_ARATH | 44.498 | 418 | 153 | 9 | 1 | 401 | 1 | 356 | 1.49e-109 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240420 | G7IFS1 | 77.556 | 401 | 44 | 3 | 1 | 400 | 1 | 356 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032620 | Msa0240420 | 0.802701 | 4.952258e-49 | -8.615850e-47 |
| Msa0208450 | Msa0240420 | 0.809244 | 2.082276e-50 | -8.615850e-47 |
| Msa0240420 | Msa0278130 | 0.871812 | 5.136018e-67 | -8.615850e-47 |
| Msa0240420 | Msa0315200 | 0.828465 | 8.858559e-55 | -8.615850e-47 |
| Msa0240420 | Msa0575010 | 0.842268 | 2.867831e-58 | -8.615850e-47 |
| Msa0240420 | Msa0595230 | 0.806842 | 6.758484e-50 | -8.615850e-47 |
| Msa0240420 | Msa0669410 | 0.807032 | 6.163210e-50 | -8.615850e-47 |
| Msa0240420 | Msa0693970 | 0.805046 | 1.612316e-49 | -8.615850e-47 |
| Msa0240420 | Msa0890310 | 0.827429 | 1.572125e-54 | -8.615850e-47 |
| Msa0240420 | Msa0916690 | 0.822603 | 2.168205e-53 | -8.615850e-47 |
| Msa0240420 | Msa0917910 | 0.831069 | 2.057234e-55 | -8.615850e-47 |
| Msa0240420 | Msa0925190 | 0.866892 | 2.044284e-65 | -8.615850e-47 |
| Msa0240420 | Msa0927390 | 0.809858 | 1.537333e-50 | -8.615850e-47 |
| Msa0240420 | Msa0955280 | 0.803725 | 3.039207e-49 | -8.615850e-47 |
| Msa0240420 | Msa1002360 | 0.802488 | 5.478002e-49 | -8.615850e-47 |
| Msa0240420 | Msa1101660 | 0.827813 | 1.271848e-54 | -8.615850e-47 |
| Msa0240420 | Msa1253510 | 0.819124 | 1.369673e-52 | -8.615850e-47 |
| Msa0240420 | Msa1259390 | 0.820971 | 5.174667e-53 | -8.615850e-47 |
| Msa0240420 | Msa1319800 | 0.804874 | 1.751523e-49 | -8.615850e-47 |
| Msa0240420 | Msa1450670 | 0.818034 | 2.419821e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240420 | MtrunA17_Chr2g0291331 | 61.235 | 405 | 88 | 8 | 1 | 400 | 1 | 341 | 2.32e-157 | 453 |
| Msa0240420 | MtrunA17_Chr2g0291321 | 63.855 | 332 | 110 | 5 | 24 | 348 | 55 | 383 | 7.86e-146 | 420 |
| Msa0240420 | MtrunA17_Chr2g0291831 | 57.682 | 371 | 94 | 8 | 33 | 400 | 57 | 367 | 2.22e-132 | 389 |
| Msa0240420 | MtrunA17_Chr2g0291381 | 62.581 | 310 | 87 | 3 | 46 | 348 | 6 | 293 | 6.67e-129 | 373 |
| Msa0240420 | MtrunA17_Chr2g0291361 | 59.677 | 310 | 118 | 2 | 46 | 348 | 6 | 315 | 5.51e-127 | 369 |
| Msa0240420 | MtrunA17_Chr2g0291421 | 82.949 | 217 | 36 | 1 | 1 | 216 | 1 | 217 | 1.57e-125 | 362 |
| Msa0240420 | MtrunA17_Chr7g0231931 | 48.565 | 418 | 135 | 7 | 1 | 402 | 1 | 354 | 9.30e-120 | 365 |
| Msa0240420 | MtrunA17_Chr2g0286711 | 47.837 | 416 | 135 | 9 | 1 | 402 | 1 | 348 | 4.94e-114 | 349 |
| Msa0240420 | MtrunA17_Chr2g0291391 | 54.039 | 359 | 88 | 9 | 1 | 324 | 1 | 317 | 1.91e-113 | 335 |
| Msa0240420 | MtrunA17_Chr2g0291811 | 51.801 | 361 | 99 | 9 | 46 | 400 | 30 | 321 | 1.15e-96 | 297 |
| Msa0240420 | MtrunA17_Chr2g0310991 | 61.842 | 228 | 41 | 4 | 184 | 406 | 1 | 187 | 4.53e-87 | 263 |
| Msa0240420 | MtrunA17_Chr3g0082331 | 37.931 | 406 | 198 | 9 | 1 | 402 | 5 | 360 | 9.82e-73 | 236 |
| Msa0240420 | MtrunA17_Chr2g0291351 | 58.852 | 209 | 61 | 3 | 137 | 343 | 4 | 189 | 2.70e-72 | 225 |
| Msa0240420 | MtrunA17_Chr4g0025761 | 36.856 | 388 | 178 | 8 | 25 | 404 | 32 | 360 | 2.13e-68 | 222 |
| Msa0240420 | MtrunA17_Chr2g0311061 | 65.068 | 146 | 24 | 3 | 184 | 324 | 1 | 124 | 2.03e-55 | 179 |
| Msa0240420 | MtrunA17_Chr6g0459191 | 42.986 | 221 | 100 | 4 | 184 | 404 | 1 | 195 | 9.36e-54 | 181 |
| Msa0240420 | MtrunA17_Chr2g0310931 | 59.589 | 146 | 27 | 4 | 184 | 324 | 1 | 119 | 2.27e-47 | 158 |
| Msa0240420 | MtrunA17_Chr2g0291301 | 43.421 | 228 | 89 | 8 | 25 | 218 | 11 | 232 | 2.17e-46 | 159 |
| Msa0240420 | MtrunA17_Chr8g0391041 | 41.739 | 230 | 101 | 4 | 184 | 404 | 1 | 206 | 5.10e-45 | 158 |
| Msa0240420 | MtrunA17_Chr4g0056591 | 29.630 | 351 | 183 | 4 | 49 | 399 | 93 | 379 | 1.69e-43 | 162 |
| Msa0240420 | MtrunA17_Chr2g0310881 | 59.091 | 110 | 21 | 2 | 212 | 317 | 43 | 132 | 5.61e-32 | 118 |
| Msa0240420 | MtrunA17_Chr8g0391581 | 33.725 | 255 | 126 | 9 | 1 | 247 | 1 | 220 | 1.96e-28 | 112 |
| Msa0240420 | MtrunA17_Chr8g0391571 | 47.059 | 119 | 45 | 2 | 286 | 404 | 1 | 101 | 1.13e-25 | 103 |
| Msa0240420 | MtrunA17_Chr7g0215051 | 62.500 | 40 | 15 | 0 | 172 | 211 | 35 | 74 | 5.96e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240420 | AT2G45030.1 | 44.498 | 418 | 153 | 9 | 1 | 401 | 1 | 356 | 1.52e-110 | 342 |
| Msa0240420 | AT1G45332.1 | 44.258 | 418 | 154 | 9 | 1 | 401 | 1 | 356 | 4.62e-109 | 338 |
| Msa0240420 | AT1G45332.2 | 51.376 | 218 | 64 | 3 | 184 | 401 | 1 | 176 | 1.33e-69 | 230 |
| Msa0240420 | AT1G62750.1 | 30.769 | 351 | 179 | 5 | 49 | 399 | 97 | 383 | 1.64e-45 | 168 |
Find 86 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAAGAGGTTTGCACTTC+TGG | 0.073925 | 2_2:-15372215 | Msa0240420:CDS |
| TGTTGATCTTGTGCAATTAA+AGG | 0.154768 | 2_2:-15374498 | Msa0240420:CDS |
| CTCAAGATCAGCTGCTGATA+TGG | 0.203048 | 2_2:+15374256 | None:intergenic |
| CTACGCAACATTTGGATTTC+GGG | 0.203256 | 2_2:-15375867 | Msa0240420:CDS |
| GCTACGCAACATTTGGATTT+CGG | 0.267195 | 2_2:-15375868 | Msa0240420:CDS |
| ACAGGGGTTACAACTACTTT+TGG | 0.293780 | 2_2:-15371448 | Msa0240420:intron |
| AAATCATCTTCCAAGCCTAT+TGG | 0.313238 | 2_2:+15374530 | None:intergenic |
| GGGCAGTGCTTTCAAATATA+AGG | 0.335629 | 2_2:-15372763 | Msa0240420:intron |
| CCGCTCTGACAGGGGTGATT+TGG | 0.354417 | 2_2:+15375830 | None:intergenic |
| GTTTCTGTAACTTCTGCATC+AGG | 0.361118 | 2_2:-15374455 | Msa0240420:CDS |
| ACCAACAGCTACGCAACATT+TGG | 0.361301 | 2_2:-15375875 | Msa0240420:CDS |
| GAAATTTATACCATTATTCA+TGG | 0.364954 | 2_2:-15372784 | Msa0240420:CDS |
| CTTCCAAGCCTATTGGAACT+TGG | 0.367482 | 2_2:+15374537 | None:intergenic |
| CATTTGCTTATCAACAGAAA+TGG | 0.372670 | 2_2:+15375362 | None:intergenic |
| CAGATGTCACTTTCTTCAAC+TGG | 0.373368 | 2_2:-15375632 | Msa0240420:CDS |
| TATAAACAATCTTGATCAAA+AGG | 0.381990 | 2_2:-15375310 | Msa0240420:CDS |
| AAAGCACTGCCCATGAATAA+TGG | 0.397207 | 2_2:+15372774 | None:intergenic |
| TATATACAAGTCTTGGAAGT+TGG | 0.404502 | 2_2:+15375331 | None:intergenic |
| CTCCAGAAGTGCAAACCTCT+TGG | 0.420452 | 2_2:+15372213 | None:intergenic |
| AGCACAATGATGTTGAAGTT+TGG | 0.422348 | 2_2:+15374565 | None:intergenic |
| TCAAGATCAGCTGCTGATAT+GGG | 0.426594 | 2_2:+15374257 | None:intergenic |
| TCTGACAGGGGTGATTTGGC+AGG | 0.429029 | 2_2:+15375834 | None:intergenic |
| TGAAGAAGTTCCTGAAGATA+TGG | 0.439374 | 2_2:-15374369 | Msa0240420:CDS |
| TTGTTCTGTCTAGTGTTGGT+GGG | 0.452705 | 2_2:-15375398 | Msa0240420:CDS |
| GTTGCGTAGCTGTTGGTCAT+TGG | 0.453587 | 2_2:+15375881 | None:intergenic |
| GCTGCAATCCAAGTTCCAAT+AGG | 0.456967 | 2_2:-15374545 | Msa0240420:CDS |
| TTATTCTTCAAATTACTCAA+TGG | 0.458797 | 2_2:-15374420 | Msa0240420:CDS |
| GGTTGCTTATTGCAGAGAAA+AGG | 0.460245 | 2_2:-15374399 | Msa0240420:CDS |
| TGGTGTAGTGGTGGTAGAAG+AGG | 0.462251 | 2_2:+15375982 | None:intergenic |
| CTTCAACTGGAAACACCATA+AGG | 0.466513 | 2_2:-15375619 | Msa0240420:intron |
| GTTTGTAGGAAGCTGTTCGC+AGG | 0.475971 | 2_2:-15372821 | Msa0240420:intron |
| CCAATCTAAGAATGAGGAAA+AGG | 0.476719 | 2_2:-15371370 | Msa0240420:CDS |
| CGGCAACGTCAAAGGCTCGC+AGG | 0.477885 | 2_2:+15375424 | None:intergenic |
| TGGTATAAATTTCCGTGCTA+TGG | 0.478285 | 2_2:+15372794 | None:intergenic |
| TTGTTTATATATACAAGTCT+TGG | 0.488111 | 2_2:+15375324 | None:intergenic |
| ACAGTAAAATCAACACGATC+AGG | 0.496194 | 2_2:+15375462 | None:intergenic |
| CACTGGTCAGATCGAAAAGA+TGG | 0.496406 | 2_2:-15375796 | Msa0240420:CDS |
| TTGAAGAAAGTGACATCTGC+AGG | 0.498962 | 2_2:+15375636 | None:intergenic |
| GAGACTTCGGTGTGATATTG+AGG | 0.505839 | 2_2:-15375739 | Msa0240420:CDS |
| AACAGACCCATGAAAATAGT+AGG | 0.510799 | 2_2:+15374475 | None:intergenic |
| ATAACATGTACCGCTCTGAC+AGG | 0.511227 | 2_2:+15375820 | None:intergenic |
| TTTGTTCTGTCTAGTGTTGG+TGG | 0.532287 | 2_2:-15375399 | Msa0240420:CDS |
| GAAGTGACGGAGGTGGAAAG+TGG | 0.536356 | 2_2:+15375926 | None:intergenic |
| GTGACGGAGGTGGAAAGTGG+AGG | 0.539232 | 2_2:+15375929 | None:intergenic |
| GCTTATCAACAGAAATGGAC+TGG | 0.542825 | 2_2:+15375367 | None:intergenic |
| GGCAACGTCAAAGGCTCGCA+GGG | 0.543594 | 2_2:+15375425 | None:intergenic |
| ACCTGATTTAAAACTTGCCA+CGG | 0.543855 | 2_2:+15375279 | None:intergenic |
| GCATAATTACTAGCTTCAGT+TGG | 0.544021 | 2_2:+15371399 | None:intergenic |
| ACTAAGGCTTCCATATCTTC+AGG | 0.545831 | 2_2:+15374359 | None:intergenic |
| ATAAACAATCTTGATCAAAA+GGG | 0.548697 | 2_2:-15375309 | Msa0240420:CDS |
| GAAAGTGGAGGAGAGCAAGC+AGG | 0.553806 | 2_2:+15375941 | None:intergenic |
| CCGCAGAGAAGTGACGGAGG+TGG | 0.556507 | 2_2:+15375919 | None:intergenic |
| TGTTCTGTCTAGTGTTGGTG+GGG | 0.562114 | 2_2:-15375397 | Msa0240420:CDS |
| ATAGAATCACATATCTGAGT+AGG | 0.562601 | 2_2:+15375660 | None:intergenic |
| AAATTTATACCATTATTCAT+GGG | 0.568111 | 2_2:-15372783 | Msa0240420:CDS |
| TAACATGTACCGCTCTGACA+GGG | 0.568837 | 2_2:+15375821 | None:intergenic |
| TTCGCAGGGCCTCCATAGCA+CGG | 0.571317 | 2_2:-15372806 | Msa0240420:CDS |
| CTGACAGGGGTGATTTGGCA+GGG | 0.573083 | 2_2:+15375835 | None:intergenic |
| CATATCAGCAGCTGATCTTG+AGG | 0.573243 | 2_2:-15374255 | Msa0240420:intron |
| TGCATGCCGCAGAGAAGTGA+CGG | 0.573645 | 2_2:+15375913 | None:intergenic |
| GGAAGATGAAGAATGAGAGG+TGG | 0.574240 | 2_2:+15375962 | None:intergenic |
| GTAATTTGAAGAATAATCGC+AGG | 0.574869 | 2_2:+15374427 | None:intergenic |
| TCCAAATGTTGCGTAGCTGT+TGG | 0.578270 | 2_2:+15375874 | None:intergenic |
| AATCCAAGTTCCAATAGGCT+TGG | 0.578915 | 2_2:-15374540 | Msa0240420:CDS |
| GCAGGAAGATGAAGAATGAG+AGG | 0.579365 | 2_2:+15375959 | None:intergenic |
| TCTCGTCCAATCTAAGAATG+AGG | 0.581147 | 2_2:-15371376 | Msa0240420:CDS |
| GTGATATTGAGGAAGAAGAA+TGG | 0.585002 | 2_2:-15375728 | Msa0240420:CDS |
| TTTGTAGGAAGCTGTTCGCA+GGG | 0.591084 | 2_2:-15372820 | Msa0240420:intron |
| TATAAATTTCCGTGCTATGG+AGG | 0.599591 | 2_2:+15372797 | None:intergenic |
| AATGAGAGGTGGTGTAGTGG+TGG | 0.603591 | 2_2:+15375973 | None:intergenic |
| AGGCTAGAAATAAAATTCAG+AGG | 0.605962 | 2_2:-15375770 | Msa0240420:CDS |
| AACATGTACCGCTCTGACAG+GGG | 0.612019 | 2_2:+15375822 | None:intergenic |
| TCAGATCGAAAAGATGGAGG+AGG | 0.617372 | 2_2:-15375790 | Msa0240420:CDS |
| AGAGGAGAGATATGAGACTT+CGG | 0.620131 | 2_2:-15375752 | Msa0240420:CDS |
| AAGAATGAGAGGTGGTGTAG+TGG | 0.626225 | 2_2:+15375970 | None:intergenic |
| ATCAAAAGGGAGCAAATCCG+TGG | 0.639394 | 2_2:-15375296 | Msa0240420:CDS |
| TGTAGTGGTGGTAGAAGAGG+AGG | 0.639925 | 2_2:+15375985 | None:intergenic |
| CGGCAAAGAGAAACGAGCCA+TGG | 0.647184 | 2_2:+15376010 | None:intergenic |
| TGGTGGTAGAAGAGGAGGCG+CGG | 0.653091 | 2_2:+15375990 | None:intergenic |
| GAGCGGTACATGTTATACAC+TGG | 0.663717 | 2_2:-15375813 | Msa0240420:CDS |
| TTAAGAGACAAAGCTCCAAG+AGG | 0.664056 | 2_2:-15372228 | Msa0240420:CDS |
| TTACTAGCTTCAGTTGGACA+CGG | 0.675851 | 2_2:+15371405 | None:intergenic |
| TGGTCAGATCGAAAAGATGG+AGG | 0.684635 | 2_2:-15375793 | Msa0240420:CDS |
| CCAAATCACCCCTGTCAGAG+CGG | 0.688387 | 2_2:-15375830 | Msa0240420:CDS |
| CCACCTCCGTCACTTCTCTG+CGG | 0.721572 | 2_2:-15375919 | Msa0240420:CDS |
| ATGCCGCAGAGAAGTGACGG+AGG | 0.729797 | 2_2:+15375916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATAATATATATTTGTT+AGG | - | chr2_2:15373360-15373379 | Msa0240420:intron | 10.0% |
| !!! | ATTATGATTTAATTTAGTTT+GGG | - | chr2_2:15374705-15374724 | Msa0240420:intron | 10.0% |
| !!! | ATATTTTTACAAATTACAAA+GGG | + | chr2_2:15375170-15375189 | None:intergenic | 10.0% |
| !! | AAATAAATAAATAATACTTG+TGG | + | chr2_2:15375262-15375281 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATATATAAGAC+TGG | + | chr2_2:15375858-15375877 | None:intergenic | 10.0% |
| !! | GAAAAATACACAAAATTAAA+AGG | - | chr2_2:15372245-15372264 | Msa0240420:CDS | 15.0% |
| !! | TATTTAATTATTATTGACCT+TGG | - | chr2_2:15372679-15372698 | Msa0240420:intron | 15.0% |
| !!! | AAATTGTTGTTTTATTTTTC+AGG | - | chr2_2:15372746-15372765 | Msa0240420:intron | 15.0% |
| !!! | AGTTTTGAATACTAATTATT+TGG | - | chr2_2:15373149-15373168 | Msa0240420:intron | 15.0% |
| !!! | ATGTTTTACATACTATATTA+TGG | + | chr2_2:15373346-15373365 | None:intergenic | 15.0% |
| !! | AATAACAATTAAGGAAAATA+GGG | + | chr2_2:15373551-15373570 | None:intergenic | 15.0% |
| !! | AAATAACAATTAAGGAAAAT+AGG | + | chr2_2:15373552-15373571 | None:intergenic | 15.0% |
| !!! | AAAGAAAATATTATTTGTTG+AGG | - | chr2_2:15373863-15373882 | Msa0240420:intron | 15.0% |
| !!! | TTTTCATTCAATTAATTCTA+TGG | - | chr2_2:15374069-15374088 | Msa0240420:intron | 15.0% |
| !! | AAATTTATACCATTATTCAT+GGG | - | chr2_2:15374557-15374576 | Msa0240420:CDS | 15.0% |
| !!! | GATTATGATTTAATTTAGTT+TGG | - | chr2_2:15374704-15374723 | Msa0240420:intron | 15.0% |
| !!! | TTCTAACTTTTCAAAAAAAT+GGG | + | chr2_2:15375049-15375068 | None:intergenic | 15.0% |
| !!! | TTTCTAACTTTTCAAAAAAA+TGG | + | chr2_2:15375050-15375069 | None:intergenic | 15.0% |
| !!! | GATATTTTTACAAATTACAA+AGG | + | chr2_2:15375171-15375190 | None:intergenic | 15.0% |
| !! | GTATATATCTAACATATAAT+AGG | + | chr2_2:15375408-15375427 | None:intergenic | 15.0% |
| !! | TAAAATACAATATTAAGAGT+TGG | + | chr2_2:15375835-15375854 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGTTGTTTC+TGG | - | chr2_2:15375868-15375887 | Msa0240420:CDS | 15.0% |
| !! | TTGTTTATATATACAAGTCT+TGG | + | chr2_2:15372019-15372038 | None:intergenic | 20.0% |
| !! | TATAAACAATCTTGATCAAA+AGG | - | chr2_2:15372030-15372049 | Msa0240420:intron | 20.0% |
| !! | ATAAACAATCTTGATCAAAA+GGG | - | chr2_2:15372031-15372050 | Msa0240420:intron | 20.0% |
| !! | CATAATCATAAAAATATCCA+AGG | + | chr2_2:15372699-15372718 | None:intergenic | 20.0% |
| !! | TTATTCTTCAAATTACTCAA+TGG | - | chr2_2:15372920-15372939 | Msa0240420:intron | 20.0% |
| !! | TTTATTATTTAACCCCTAAT+GGG | + | chr2_2:15373456-15373475 | None:intergenic | 20.0% |
| !!! | TTTTATTATTTAACCCCTAA+TGG | + | chr2_2:15373457-15373476 | None:intergenic | 20.0% |
| !! | ATTAGGGGTTAAATAATAAA+AGG | - | chr2_2:15373456-15373475 | Msa0240420:intron | 20.0% |
| !! | GAAGATACAAATAACAATTA+AGG | + | chr2_2:15373560-15373579 | None:intergenic | 20.0% |
| !!! | TTTTCTTTCAATTAAGTCTA+TGG | + | chr2_2:15373851-15373870 | None:intergenic | 20.0% |
| !! | ACACTATATTAACAAAAAGT+GGG | + | chr2_2:15374426-15374445 | None:intergenic | 20.0% |
| !!! | TTTGTTATTATTGTGTTTGT+AGG | - | chr2_2:15374505-15374524 | Msa0240420:CDS | 20.0% |
| !! | GAAATTTATACCATTATTCA+TGG | - | chr2_2:15374556-15374575 | Msa0240420:CDS | 20.0% |
| !! | ATGACACTATACAAAAAATT+TGG | - | chr2_2:15374802-15374821 | Msa0240420:intron | 20.0% |
| !! | TGACACTATACAAAAAATTT+GGG | - | chr2_2:15374803-15374822 | Msa0240420:intron | 20.0% |
| !!! | CTATTATAATTTGTTACAGA+AGG | - | chr2_2:15375077-15375096 | Msa0240420:intron | 20.0% |
| !! | AACATATAATAGGTTTCTTT+AGG | + | chr2_2:15375398-15375417 | None:intergenic | 20.0% |
| !! | TATGTTAGATATATACTAGA+TGG | - | chr2_2:15375412-15375431 | Msa0240420:CDS | 20.0% |
| ! | ACTTTAGATTATTGGATTTG+AGG | - | chr2_2:15372086-15372105 | Msa0240420:intron | 25.0% |
| !! | ACTGTTATAGGATTTTATAC+AGG | + | chr2_2:15372138-15372157 | None:intergenic | 25.0% |
| ! | TGAGTATTTATGTATCTTGT+TGG | + | chr2_2:15372219-15372238 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAAACTTAAACA+GGG | - | chr2_2:15372405-15372424 | Msa0240420:intron | 25.0% |
| !!! | TGTTTTAAGTAATTAACTGG+TGG | - | chr2_2:15373397-15373416 | Msa0240420:intron | 25.0% |
| ! | TTAAATAATAAAAGGCCCAT+TGG | - | chr2_2:15373464-15373483 | Msa0240420:intron | 25.0% |
| ! | TAAATAATAAAAGGCCCATT+GGG | - | chr2_2:15373465-15373484 | Msa0240420:intron | 25.0% |
| ! | ATAATATTGAAAGGAACCAA+TGG | + | chr2_2:15373622-15373641 | None:intergenic | 25.0% |
| !!! | GACATATATTGATAGTCTTT+TGG | + | chr2_2:15373823-15373842 | None:intergenic | 25.0% |
| !! | AATATTATTTGTTGAGGAAG+AGG | - | chr2_2:15373869-15373888 | Msa0240420:intron | 25.0% |
| !! | ATATTATTTGTTGAGGAAGA+GGG | - | chr2_2:15373870-15373889 | Msa0240420:intron | 25.0% |
| ! | AACATGAAAGAGAAAATTGA+AGG | - | chr2_2:15374257-15374276 | Msa0240420:CDS | 25.0% |
| ! | ATCCTCTCTATGAAATAAAA+TGG | + | chr2_2:15374296-15374315 | None:intergenic | 25.0% |
| ! | CACACTATATTAACAAAAAG+TGG | + | chr2_2:15374427-15374446 | None:intergenic | 25.0% |
| ! | ACTATTTACAAGATAAGAGA+TGG | + | chr2_2:15374479-15374498 | None:intergenic | 25.0% |
| ! | AATTTCCAAATTGAAATCTC+TGG | + | chr2_2:15374735-15374754 | None:intergenic | 25.0% |
| ! | ATATATACTAGATGGAAGAA+GGG | - | chr2_2:15375420-15375439 | Msa0240420:CDS | 25.0% |
| AGGCTAGAAATAAAATTCAG+AGG | - | chr2_2:15371570-15371589 | Msa0240420:intron | 30.0% | |
| !! | AGGATATGAACTTTTTCTTG+TGG | + | chr2_2:15371663-15371682 | None:intergenic | 30.0% |
| ATAGAATCACATATCTGAGT+AGG | + | chr2_2:15371683-15371702 | None:intergenic | 30.0% | |
| AAGTGAAAATTGAGACCTTA+TGG | + | chr2_2:15371739-15371758 | None:intergenic | 30.0% | |
| AACACTAGACAGAACAAAAA+CGG | + | chr2_2:15371939-15371958 | None:intergenic | 30.0% | |
| CATTTGCTTATCAACAGAAA+TGG | + | chr2_2:15371981-15372000 | None:intergenic | 30.0% | |
| TATATACAAGTCTTGGAAGT+TGG | + | chr2_2:15372012-15372031 | None:intergenic | 30.0% | |
| TCAGGTGAACTTTAGATTAT+TGG | - | chr2_2:15372078-15372097 | Msa0240420:intron | 30.0% | |
| AAAATCCTATAACAGTACAG+TGG | - | chr2_2:15372142-15372161 | Msa0240420:intron | 30.0% | |
| AAATCCTATAACAGTACAGT+GGG | - | chr2_2:15372143-15372162 | Msa0240420:intron | 30.0% | |
| ! | GTTTTCTTTCTCTGTACTTT+AGG | + | chr2_2:15372398-15372417 | None:intergenic | 30.0% |
| CAGAGAAAGAAAACTTAAAC+AGG | - | chr2_2:15372404-15372423 | Msa0240420:intron | 30.0% | |
| ! | TCAAACTGCTATTGATAACA+TGG | - | chr2_2:15372460-15372479 | Msa0240420:intron | 30.0% |
| TGTTGATCTTGTGCAATTAA+AGG | - | chr2_2:15372842-15372861 | Msa0240420:intron | 30.0% | |
| ! | TTAAAGGCCTACTATTTTCA+TGG | - | chr2_2:15372858-15372877 | Msa0240420:intron | 30.0% |
| ! | TAAAGGCCTACTATTTTCAT+GGG | - | chr2_2:15372859-15372878 | Msa0240420:intron | 30.0% |
| GTAATTTGAAGAATAATCGC+AGG | + | chr2_2:15372916-15372935 | None:intergenic | 30.0% | |
| ACTCATAAAAACTGTATCAG+AGG | - | chr2_2:15373022-15373041 | Msa0240420:intron | 30.0% | |
| !!! | ACGATGTCTTTTTTGTTCAT+TGG | - | chr2_2:15373126-15373145 | Msa0240420:intron | 30.0% |
| AATGTTATAGAAACGTTGCA+TGG | - | chr2_2:15373306-15373325 | Msa0240420:intron | 30.0% | |
| ATGTTATAGAAACGTTGCAT+GGG | - | chr2_2:15373307-15373326 | Msa0240420:intron | 30.0% | |
| ! | ATTTGTTAGGATCCAATATG+AGG | - | chr2_2:15373373-15373392 | Msa0240420:intron | 30.0% |
| TTTGTTAGGATCCAATATGA+GGG | - | chr2_2:15373374-15373393 | Msa0240420:intron | 30.0% | |
| TACTTAAAACACCCTCATAT+TGG | + | chr2_2:15373388-15373407 | None:intergenic | 30.0% | |
| !! | GGGTGTTTTAAGTAATTAAC+TGG | - | chr2_2:15373394-15373413 | Msa0240420:intron | 30.0% |
| TAATTAACTGGTGGTTAAGT+AGG | - | chr2_2:15373406-15373425 | Msa0240420:intron | 30.0% | |
| ATTTGTATCTTCATCTTGCT+TGG | - | chr2_2:15373568-15373587 | Msa0240420:intron | 30.0% | |
| TTTGTATCTTCATCTTGCTT+GGG | - | chr2_2:15373569-15373588 | Msa0240420:intron | 30.0% | |
| CACCAATCATCATATGTTTA+CGG | + | chr2_2:15373723-15373742 | None:intergenic | 30.0% | |
| TCTTCAAAGTCATTAACAAG+TGG | + | chr2_2:15373903-15373922 | None:intergenic | 30.0% | |
| ACATTGTTTGATATGATACG+AGG | + | chr2_2:15374225-15374244 | None:intergenic | 30.0% | |
| TATCAAACAATGTTGCCAAA+AGG | - | chr2_2:15374232-15374251 | Msa0240420:intron | 30.0% | |
| ! | TCTCTTTCATGTTTTCCTTT+TGG | + | chr2_2:15374250-15374269 | None:intergenic | 30.0% |
| !!! | TGCCATTTTATTTCATAGAG+AGG | - | chr2_2:15374291-15374310 | Msa0240420:CDS | 30.0% |
| AAGGAATTTGAATCAGGAAT+TGG | + | chr2_2:15374362-15374381 | None:intergenic | 30.0% | |
| TTTACAAGATAAGAGATGGT+GGG | + | chr2_2:15374475-15374494 | None:intergenic | 30.0% | |
| ATTTACAAGATAAGAGATGG+TGG | + | chr2_2:15374476-15374495 | None:intergenic | 30.0% | |
| ! | ACCTTGAATTTTCTGTTGTA+TGG | - | chr2_2:15374613-15374632 | Msa0240420:intron | 30.0% |
| ACCATACAACAGAAAATTCA+AGG | + | chr2_2:15374617-15374636 | None:intergenic | 30.0% | |
| GAAAAAAAGGGAATGAATGA+AGG | + | chr2_2:15374645-15374664 | None:intergenic | 30.0% | |
| AGAGTCTACTGAGAAAAAAA+GGG | + | chr2_2:15374657-15374676 | None:intergenic | 30.0% | |
| AAGAGTCTACTGAGAAAAAA+AGG | + | chr2_2:15374658-15374677 | None:intergenic | 30.0% | |
| CATAATCATAGTAAAGAGTC+AGG | + | chr2_2:15374691-15374710 | None:intergenic | 30.0% | |
| CTCATACATAACCATAGTAA+GGG | + | chr2_2:15375009-15375028 | None:intergenic | 30.0% | |
| GATATATACTAGATGGAAGA+AGG | - | chr2_2:15375419-15375438 | Msa0240420:CDS | 30.0% | |
| ! | AGTTATTTACACCTAGCTTT+GGG | - | chr2_2:15375487-15375506 | Msa0240420:intron | 30.0% |
| ACAAAGAATCAAAAGAGCTT+TGG | - | chr2_2:15375559-15375578 | Msa0240420:intron | 30.0% | |
| CAAAGAATCAAAAGAGCTTT+GGG | - | chr2_2:15375560-15375579 | Msa0240420:intron | 30.0% | |
| AAAGAATCAAAAGAGCTTTG+GGG | - | chr2_2:15375561-15375580 | Msa0240420:intron | 30.0% | |
| GAATCAACGTTATCAAATAG+TGG | + | chr2_2:15375788-15375807 | None:intergenic | 30.0% | |
| !! | CTATTTGATAACGTTGATTC+TGG | - | chr2_2:15375788-15375807 | Msa0240420:CDS | 30.0% |
| !!! | TTTTTTGTTGTTTCTGGTAC+AGG | - | chr2_2:15375874-15375893 | Msa0240420:CDS | 30.0% |
| !!! | TTTTTGTTGTTTCTGGTACA+GGG | - | chr2_2:15375875-15375894 | Msa0240420:CDS | 30.0% |
| GTGATATTGAGGAAGAAGAA+TGG | - | chr2_2:15371612-15371631 | Msa0240420:intron | 35.0% | |
| !!! | GGCTCAATTTTAGTTATCGT+CGG | - | chr2_2:15371633-15371652 | Msa0240420:intron | 35.0% |
| ACAGTAAAATCAACACGATC+AGG | + | chr2_2:15371881-15371900 | None:intergenic | 35.0% | |
| ! | GTTTTTGTTCTGTCTAGTGT+TGG | - | chr2_2:15371938-15371957 | Msa0240420:intron | 35.0% |
| ! | ACCTGATTTAAAACTTGCCA+CGG | + | chr2_2:15372064-15372083 | None:intergenic | 35.0% |
| ATCAAAATGACATCAAGACG+AGG | - | chr2_2:15372318-15372337 | Msa0240420:intron | 35.0% | |
| ! | TCTTTTTGCTCTGTTTGGTT+GGG | + | chr2_2:15372363-15372382 | None:intergenic | 35.0% |
| ! | TTCTTTTTGCTCTGTTTGGT+TGG | + | chr2_2:15372364-15372383 | None:intergenic | 35.0% |
| CAAACAGAGCAAAAAGAACA+CGG | - | chr2_2:15372366-15372385 | Msa0240420:intron | 35.0% | |
| AGCACAATGATGTTGAAGTT+TGG | + | chr2_2:15372778-15372797 | None:intergenic | 35.0% | |
| AAATCATCTTCCAAGCCTAT+TGG | + | chr2_2:15372813-15372832 | None:intergenic | 35.0% | |
| ! | AGGCTTGGAAGATGATTTTA+AGG | - | chr2_2:15372815-15372834 | Msa0240420:CDS | 35.0% |
| ! | GGCTTGGAAGATGATTTTAA+GGG | - | chr2_2:15372816-15372835 | Msa0240420:CDS | 35.0% |
| AACAGACCCATGAAAATAGT+AGG | + | chr2_2:15372868-15372887 | None:intergenic | 35.0% | |
| TGAAGAAGTTCCTGAAGATA+TGG | - | chr2_2:15372971-15372990 | Msa0240420:intron | 35.0% | |
| AAGCCTTAGTGTCAGAAAAA+AGG | - | chr2_2:15372994-15373013 | Msa0240420:intron | 35.0% | |
| !!! | ATGCCTTTTTTCTGACACTA+AGG | + | chr2_2:15373000-15373019 | None:intergenic | 35.0% |
| !! | CATATTGTCTTGAAGTGTTG+AGG | - | chr2_2:15373228-15373247 | Msa0240420:intron | 35.0% |
| TTATTAGTAAGTCGCCCATT+AGG | - | chr2_2:15373439-15373458 | Msa0240420:intron | 35.0% | |
| TATTAGTAAGTCGCCCATTA+GGG | - | chr2_2:15373440-15373459 | Msa0240420:intron | 35.0% | |
| TTTCTCTAACTACTCCCAAT+GGG | + | chr2_2:15373482-15373501 | None:intergenic | 35.0% | |
| ! | TTTTCTCTAACTACTCCCAA+TGG | + | chr2_2:15373483-15373502 | None:intergenic | 35.0% |
| ATCTGTAATTGACAGCTCTA+AGG | + | chr2_2:15373677-15373696 | None:intergenic | 35.0% | |
| GAGCTGTCAATTACAGATTA+TGG | - | chr2_2:15373679-15373698 | Msa0240420:intron | 35.0% | |
| CTGTCAATTACAGATTATGG+TGG | - | chr2_2:15373682-15373701 | Msa0240420:intron | 35.0% | |
| !! | ATATGTTTACGGCGGATTTT+GGG | + | chr2_2:15373712-15373731 | None:intergenic | 35.0% |
| CAATCATCATATGTTTACGG+CGG | + | chr2_2:15373720-15373739 | None:intergenic | 35.0% | |
| ATGATTGGTGTAACAGCATT+TGG | - | chr2_2:15373733-15373752 | Msa0240420:intron | 35.0% | |
| ! | CTTTGAAGATGATTGTGTTG+AGG | - | chr2_2:15373914-15373933 | Msa0240420:intron | 35.0% |
| GAAGTCTTGAGTTTGATAAG+TGG | - | chr2_2:15374006-15374025 | Msa0240420:intron | 35.0% | |
| TGAGTTTGATAAGTGGTTGT+TGG | - | chr2_2:15374013-15374032 | Msa0240420:intron | 35.0% | |
| ! | CACATGTTTTTCCACTTGTT+AGG | + | chr2_2:15374202-15374221 | None:intergenic | 35.0% |
| AACTTCATCTCAAAACCCAA+GGG | + | chr2_2:15374333-15374352 | None:intergenic | 35.0% | |
| AAATGCAATACATGCGCAAA+AGG | + | chr2_2:15374381-15374400 | None:intergenic | 35.0% | |
| ! | TTGCGCATGTATTGCATTTT+TGG | - | chr2_2:15374382-15374401 | Msa0240420:CDS | 35.0% |
| ! | TGCGCATGTATTGCATTTTT+GGG | - | chr2_2:15374383-15374402 | Msa0240420:CDS | 35.0% |
| !!! | CATGTATTGCATTTTTGGGT+TGG | - | chr2_2:15374387-15374406 | Msa0240420:CDS | 35.0% |
| !! | ACAAAAAGTGGGTTTTCCAA+AGG | + | chr2_2:15374415-15374434 | None:intergenic | 35.0% |
| TTACAAGATAAGAGATGGTG+GGG | + | chr2_2:15374474-15374493 | None:intergenic | 35.0% | |
| TATAAATTTCCGTGCTATGG+AGG | + | chr2_2:15374546-15374565 | None:intergenic | 35.0% | |
| TGGTATAAATTTCCGTGCTA+TGG | + | chr2_2:15374549-15374568 | None:intergenic | 35.0% | |
| GTCTTCCAGAGATTTCAATT+TGG | - | chr2_2:15374727-15374746 | Msa0240420:intron | 35.0% | |
| TAGCATTCTTAGCACGATAA+TGG | - | chr2_2:15374766-15374785 | Msa0240420:intron | 35.0% | |
| CTATACAAAAAATTTGGGCC+TGG | - | chr2_2:15374808-15374827 | Msa0240420:intron | 35.0% | |
| !!! | AGCTAGCTTTTAAAACAGCA+GGG | + | chr2_2:15374960-15374979 | None:intergenic | 35.0% |
| !!! | TAGCTAGCTTTTAAAACAGC+AGG | + | chr2_2:15374961-15374980 | None:intergenic | 35.0% |
| ACATAACCATAGTAAGGGAA+TGG | + | chr2_2:15375004-15375023 | None:intergenic | 35.0% | |
| CCTCATACATAACCATAGTA+AGG | + | chr2_2:15375010-15375029 | None:intergenic | 35.0% | |
| CCTTACTATGGTTATGTATG+AGG | - | chr2_2:15375007-15375026 | Msa0240420:intron | 35.0% | |
| TTGAATCCAACATATGATCC+AGG | + | chr2_2:15375374-15375393 | None:intergenic | 35.0% | |
| AGGAGAATTAGTTGTTAGGT+TGG | - | chr2_2:15375453-15375472 | Msa0240420:CDS | 35.0% | |
| GGAGAATTAGTTGTTAGGTT+GGG | - | chr2_2:15375454-15375473 | Msa0240420:CDS | 35.0% | |
| CAAAGCTAGGTGTAAATAAC+TGG | + | chr2_2:15375488-15375507 | None:intergenic | 35.0% | |
| CAGTTATTTACACCTAGCTT+TGG | - | chr2_2:15375486-15375505 | Msa0240420:intron | 35.0% | |
| !! | TGCAAGCGTTTATGCTATTT+TGG | - | chr2_2:15375605-15375624 | Msa0240420:intron | 35.0% |
| GATTACAGAGAGTGAAACTA+TGG | - | chr2_2:15375639-15375658 | Msa0240420:CDS | 35.0% | |
| !!! | TTTTGTTGTTTCTGGTACAG+GGG | - | chr2_2:15375876-15375895 | Msa0240420:CDS | 35.0% |
| ! | GCATAATTACTAGCTTCAGT+TGG | + | chr2_2:15375944-15375963 | None:intergenic | 35.0% |
| ! | CCTTTTCCTCATTCTTAGAT+TGG | + | chr2_2:15375973-15375992 | None:intergenic | 35.0% |
| CCAATCTAAGAATGAGGAAA+AGG | - | chr2_2:15375970-15375989 | Msa0240420:CDS | 35.0% | |
| GCTACGCAACATTTGGATTT+CGG | - | chr2_2:15371472-15371491 | Msa0240420:intron | 40.0% | |
| CTACGCAACATTTGGATTTC+GGG | - | chr2_2:15371473-15371492 | Msa0240420:intron | 40.0% | |
| AGAGGAGAGATATGAGACTT+CGG | - | chr2_2:15371588-15371607 | Msa0240420:intron | 40.0% | |
| TTGAAGAAAGTGACATCTGC+AGG | + | chr2_2:15371707-15371726 | None:intergenic | 40.0% | |
| !! | CAGATGTCACTTTCTTCAAC+TGG | - | chr2_2:15371708-15371727 | Msa0240420:intron | 40.0% |
| CTTCAACTGGAAACACCATA+AGG | - | chr2_2:15371721-15371740 | Msa0240420:intron | 40.0% | |
| TATCAATTACGCTCATCTGC+AGG | + | chr2_2:15371856-15371875 | None:intergenic | 40.0% | |
| AACAAAAACGGCAACGTCAA+AGG | + | chr2_2:15371927-15371946 | None:intergenic | 40.0% | |
| ! | TTTGTTCTGTCTAGTGTTGG+TGG | - | chr2_2:15371941-15371960 | Msa0240420:intron | 40.0% |
| !! | TTGTTCTGTCTAGTGTTGGT+GGG | - | chr2_2:15371942-15371961 | Msa0240420:intron | 40.0% |
| GCTTATCAACAGAAATGGAC+TGG | + | chr2_2:15371976-15371995 | None:intergenic | 40.0% | |
| !!! | TCCGTGGCAAGTTTTAAATC+AGG | - | chr2_2:15372060-15372079 | Msa0240420:intron | 40.0% |
| CTATCCCACTGTACTGTTAT+AGG | + | chr2_2:15372150-15372169 | None:intergenic | 40.0% | |
| ! | CGTGTTCTTTTTGCTCTGTT+TGG | + | chr2_2:15372368-15372387 | None:intergenic | 40.0% |
| AATCCAAGTTCCAATAGGCT+TGG | - | chr2_2:15372800-15372819 | Msa0240420:CDS | 40.0% | |
| GTTTCTGTAACTTCTGCATC+AGG | - | chr2_2:15372885-15372904 | Msa0240420:intron | 40.0% | |
| GGTTGCTTATTGCAGAGAAA+AGG | - | chr2_2:15372941-15372960 | Msa0240420:intron | 40.0% | |
| ACTAAGGCTTCCATATCTTC+AGG | + | chr2_2:15372984-15373003 | None:intergenic | 40.0% | |
| TCAAGATCAGCTGCTGATAT+GGG | + | chr2_2:15373086-15373105 | None:intergenic | 40.0% | |
| TAGAAACGTTGCATGGGTTT+CGG | - | chr2_2:15373313-15373332 | Msa0240420:intron | 40.0% | |
| ACTGGTGGTTAAGTAGGTAT+AGG | - | chr2_2:15373412-15373431 | Msa0240420:intron | 40.0% | |
| ATTAGTAAGTCGCCCATTAG+GGG | - | chr2_2:15373441-15373460 | Msa0240420:intron | 40.0% | |
| ! | GTGTTCGATTGGTTGATTGT+AGG | - | chr2_2:15373594-15373613 | Msa0240420:intron | 40.0% |
| TGGTTGATTGTAGGATCCAT+TGG | - | chr2_2:15373603-15373622 | Msa0240420:intron | 40.0% | |
| !! | CATATGTTTACGGCGGATTT+TGG | + | chr2_2:15373713-15373732 | None:intergenic | 40.0% |
| CGCCGTAAACATATGATGAT+TGG | - | chr2_2:15373718-15373737 | Msa0240420:intron | 40.0% | |
| ATGTAGTGAACAACACTGTG+AGG | - | chr2_2:15374120-15374139 | Msa0240420:intron | 40.0% | |
| TCAAAACCCAAGGGATGATA+CGG | + | chr2_2:15374324-15374343 | None:intergenic | 40.0% | |
| CAACTTCATCTCAAAACCCA+AGG | + | chr2_2:15374334-15374353 | None:intergenic | 40.0% | |
| GCGCAAAAGGAATTTGAATC+AGG | + | chr2_2:15374368-15374387 | None:intergenic | 40.0% | |
| !!! | CATTTTTGGGTTGGATCCTT+TGG | - | chr2_2:15374396-15374415 | Msa0240420:CDS | 40.0% |
| ! | TACAAGATAAGAGATGGTGG+GGG | + | chr2_2:15374473-15374492 | None:intergenic | 40.0% |
| !! | AAAGCACTGCCCATGAATAA+TGG | + | chr2_2:15374569-15374588 | None:intergenic | 40.0% |
| GGGCAGTGCTTTCAAATATA+AGG | - | chr2_2:15374577-15374596 | Msa0240420:intron | 40.0% | |
| ! | GCTTTTCCATTCCCTTACTA+TGG | - | chr2_2:15374995-15375014 | Msa0240420:intron | 40.0% |
| TTAAGAGACAAAGCTCCAAG+AGG | - | chr2_2:15375112-15375131 | Msa0240420:intron | 40.0% | |
| TTAGGACAGTGTATCGCATT+GGG | + | chr2_2:15375314-15375333 | None:intergenic | 40.0% | |
| GATACACTGTCCTAAGTTCT+AGG | - | chr2_2:15375319-15375338 | Msa0240420:CDS | 40.0% | |
| TAATGAGGTTGAACATGACC+TGG | - | chr2_2:15375353-15375372 | Msa0240420:CDS | 40.0% | |
| ACATGACCTGGATCATATGT+TGG | - | chr2_2:15375365-15375384 | Msa0240420:CDS | 40.0% | |
| TAACAACTAATTCTCCTCCC+TGG | + | chr2_2:15375450-15375469 | None:intergenic | 40.0% | |
| AGGGAGGAGAATTAGTTGTT+AGG | - | chr2_2:15375449-15375468 | Msa0240420:CDS | 40.0% | |
| !! | AGTTGTTAGGTTGGGTTAGT+TGG | - | chr2_2:15375462-15375481 | Msa0240420:CDS | 40.0% |
| !!! | AGCGTTTATGCTATTTTGGC+TGG | - | chr2_2:15375609-15375628 | Msa0240420:intron | 40.0% |
| GAGAGTGAAACTATGGAAGA+AGG | - | chr2_2:15375646-15375665 | Msa0240420:CDS | 40.0% | |
| GAAATTGCGGATAAACATGG+AGG | + | chr2_2:15375681-15375700 | None:intergenic | 40.0% | |
| GTGGAAATTGCGGATAAACA+TGG | + | chr2_2:15375684-15375703 | None:intergenic | 40.0% | |
| ! | GCATTTCATGGTGGAAATTG+CGG | + | chr2_2:15375694-15375713 | None:intergenic | 40.0% |
| ATTTCCACCATGAAATGCCA+TGG | - | chr2_2:15375696-15375715 | Msa0240420:CDS | 40.0% | |
| ACGTTATCAAATAGTGGCCT+TGG | + | chr2_2:15375782-15375801 | None:intergenic | 40.0% | |
| ! | ACAGGGGTTACAACTACTTT+TGG | - | chr2_2:15375892-15375911 | Msa0240420:CDS | 40.0% |
| !! | GGGTTACAACTACTTTTGGA+TGG | - | chr2_2:15375896-15375915 | Msa0240420:CDS | 40.0% |
| ! | TTACTAGCTTCAGTTGGACA+CGG | + | chr2_2:15375938-15375957 | None:intergenic | 40.0% |
| TCTCGTCCAATCTAAGAATG+AGG | - | chr2_2:15375964-15375983 | Msa0240420:CDS | 40.0% | |
| AAGAATGAGAGGTGGTGTAG+TGG | + | chr2_2:15371373-15371392 | None:intergenic | 45.0% | |
| GGAAGATGAAGAATGAGAGG+TGG | + | chr2_2:15371381-15371400 | None:intergenic | 45.0% | |
| GCAGGAAGATGAAGAATGAG+AGG | + | chr2_2:15371384-15371403 | None:intergenic | 45.0% | |
| ACCAACAGCTACGCAACATT+TGG | - | chr2_2:15371465-15371484 | Msa0240420:intron | 45.0% | |
| TCCAAATGTTGCGTAGCTGT+TGG | + | chr2_2:15371469-15371488 | None:intergenic | 45.0% | |
| TAACATGTACCGCTCTGACA+GGG | + | chr2_2:15371522-15371541 | None:intergenic | 45.0% | |
| ATAACATGTACCGCTCTGAC+AGG | + | chr2_2:15371523-15371542 | None:intergenic | 45.0% | |
| GAGCGGTACATGTTATACAC+TGG | - | chr2_2:15371527-15371546 | Msa0240420:intron | 45.0% | |
| CACTGGTCAGATCGAAAAGA+TGG | - | chr2_2:15371544-15371563 | Msa0240420:intron | 45.0% | |
| TGGTCAGATCGAAAAGATGG+AGG | - | chr2_2:15371547-15371566 | Msa0240420:intron | 45.0% | |
| TCAGATCGAAAAGATGGAGG+AGG | - | chr2_2:15371550-15371569 | Msa0240420:intron | 45.0% | |
| ! | GAGACTTCGGTGTGATATTG+AGG | - | chr2_2:15371601-15371620 | Msa0240420:intron | 45.0% |
| ATTACGCTCATCTGCAGGAA+CGG | + | chr2_2:15371851-15371870 | None:intergenic | 45.0% | |
| !! | TGTTCTGTCTAGTGTTGGTG+GGG | - | chr2_2:15371943-15371962 | Msa0240420:intron | 45.0% |
| ATCAAAAGGGAGCAAATCCG+TGG | - | chr2_2:15372044-15372063 | Msa0240420:intron | 45.0% | |
| GCTGCAATCCAAGTTCCAAT+AGG | - | chr2_2:15372795-15372814 | Msa0240420:CDS | 45.0% | |
| CTTCCAAGCCTATTGGAACT+TGG | + | chr2_2:15372806-15372825 | None:intergenic | 45.0% | |
| CTCAAGATCAGCTGCTGATA+TGG | + | chr2_2:15373087-15373106 | None:intergenic | 45.0% | |
| CATATCAGCAGCTGATCTTG+AGG | - | chr2_2:15373085-15373104 | Msa0240420:intron | 45.0% | |
| ! | TTGCTTGGGTTGTGTTCGAT+TGG | - | chr2_2:15373583-15373602 | Msa0240420:intron | 45.0% |
| !! | GCTCTAAGGATAACAATGCG+TGG | + | chr2_2:15373663-15373682 | None:intergenic | 45.0% |
| AACAGCATTTGGCAGAAGCA+TGG | - | chr2_2:15373744-15373763 | Msa0240420:intron | 45.0% | |
| ATACTGACCAGTACTATCCC+TGG | - | chr2_2:15374156-15374175 | Msa0240420:intron | 45.0% | |
| TACTGACCAGTACTATCCCT+GGG | - | chr2_2:15374157-15374176 | Msa0240420:intron | 45.0% | |
| TTCTAGTGGGACCTAACAAG+TGG | - | chr2_2:15374188-15374207 | Msa0240420:intron | 45.0% | |
| CAAAACCCAAGGGATGATAC+GGG | + | chr2_2:15374323-15374342 | None:intergenic | 45.0% | |
| TTTGTAGGAAGCTGTTCGCA+GGG | - | chr2_2:15374520-15374539 | Msa0240420:CDS | 45.0% | |
| GCGTGACATAAGATTAGACC+AGG | + | chr2_2:15374829-15374848 | None:intergenic | 45.0% | |
| CTTAGGACAGTGTATCGCAT+TGG | + | chr2_2:15375315-15375334 | None:intergenic | 45.0% | |
| !! | CTAAGTTCTAGGCCTAAGAG+CGG | - | chr2_2:15375330-15375349 | Msa0240420:CDS | 45.0% |
| TCAACCTCATTACCGCTCTT+AGG | + | chr2_2:15375345-15375364 | None:intergenic | 45.0% | |
| TATGGCCAATTTGCGAAGCA+CGG | + | chr2_2:15375727-15375746 | None:intergenic | 45.0% | |
| ! | GGATTTTTCGTGAACCGCTA+TGG | + | chr2_2:15375745-15375764 | None:intergenic | 45.0% |
| !!! | TTATATTTTATAATATTGAA+AGG | + | chr2_2:15373631-15373650 | None:intergenic | 5.0% |
| TGTAGTGGTGGTAGAAGAGG+AGG | + | chr2_2:15371358-15371377 | None:intergenic | 50.0% | |
| TGGTGTAGTGGTGGTAGAAG+AGG | + | chr2_2:15371361-15371380 | None:intergenic | 50.0% | |
| AATGAGAGGTGGTGTAGTGG+TGG | + | chr2_2:15371370-15371389 | None:intergenic | 50.0% | |
| GTTGCGTAGCTGTTGGTCAT+TGG | + | chr2_2:15371462-15371481 | None:intergenic | 50.0% | |
| AACATGTACCGCTCTGACAG+GGG | + | chr2_2:15371521-15371540 | None:intergenic | 50.0% | |
| CAGTGGGATAGCTGCTATTG+CGG | - | chr2_2:15372159-15372178 | Msa0240420:intron | 50.0% | |
| CAGCTGATCTTGAGGTGTGT+GGG | - | chr2_2:15373093-15373112 | Msa0240420:intron | 50.0% | |
| ATCTTGAGGTGTGTGGGTGA+CGG | - | chr2_2:15373099-15373118 | Msa0240420:intron | 50.0% | |
| ! | AGCATTTGGCAGAAGCATGG+CGG | - | chr2_2:15373747-15373766 | Msa0240420:intron | 50.0% |
| TTCTCTCCCAGGGATAGTAC+TGG | + | chr2_2:15374166-15374185 | None:intergenic | 50.0% | |
| CACTAGAAGCTTCTCTCCCA+GGG | + | chr2_2:15374176-15374195 | None:intergenic | 50.0% | |
| CTGGGAGAGAAGCTTCTAGT+GGG | - | chr2_2:15374175-15374194 | Msa0240420:intron | 50.0% | |
| ATATCGCCCGTATCATCCCT+TGG | - | chr2_2:15374314-15374333 | Msa0240420:CDS | 50.0% | |
| TATCGCCCGTATCATCCCTT+GGG | - | chr2_2:15374315-15374334 | Msa0240420:CDS | 50.0% | |
| !! | GATGGTGGGGGAATAACAAC+TGG | + | chr2_2:15374461-15374480 | None:intergenic | 50.0% |
| GTTTGTAGGAAGCTGTTCGC+AGG | - | chr2_2:15374519-15374538 | Msa0240420:CDS | 50.0% | |
| CTCCAAGAGGTTTGCACTTC+TGG | - | chr2_2:15375125-15375144 | Msa0240420:intron | 50.0% | |
| ! | CTCCAGAAGTGCAAACCTCT+TGG | + | chr2_2:15375130-15375149 | None:intergenic | 50.0% |
| CGCTCTTAGGCCTAGAACTT+AGG | + | chr2_2:15375332-15375351 | None:intergenic | 50.0% | |
| TAGGCCTAAGAGCGGTAATG+AGG | - | chr2_2:15375338-15375357 | Msa0240420:CDS | 50.0% | |
| !! | TACACCTAGCTTTGGGAGTC+AGG | - | chr2_2:15375494-15375513 | Msa0240420:intron | 50.0% |
| !! | TAGCTTTGGGAGTCAGGAGT+GGG | - | chr2_2:15375500-15375519 | Msa0240420:intron | 50.0% |
| GCTTCGCAAATTGGCCATAG+CGG | - | chr2_2:15375728-15375747 | Msa0240420:CDS | 50.0% | |
| GAAAGTGGAGGAGAGCAAGC+AGG | + | chr2_2:15371402-15371421 | None:intergenic | 55.0% | |
| ! | GAAGTGACGGAGGTGGAAAG+TGG | + | chr2_2:15371417-15371436 | None:intergenic | 55.0% |
| TGCATGCCGCAGAGAAGTGA+CGG | + | chr2_2:15371430-15371449 | None:intergenic | 55.0% | |
| ! | CTGACAGGGGTGATTTGGCA+GGG | + | chr2_2:15371508-15371527 | None:intergenic | 55.0% |
| ! | TCTGACAGGGGTGATTTGGC+AGG | + | chr2_2:15371509-15371528 | None:intergenic | 55.0% |
| CCAAATCACCCCTGTCAGAG+CGG | - | chr2_2:15371510-15371529 | Msa0240420:intron | 55.0% | |
| GCAGCTGATCTTGAGGTGTG+TGG | - | chr2_2:15373092-15373111 | Msa0240420:intron | 55.0% | |
| CCACTAGAAGCTTCTCTCCC+AGG | + | chr2_2:15374177-15374196 | None:intergenic | 55.0% | |
| CCTGGGAGAGAAGCTTCTAG+TGG | - | chr2_2:15374174-15374193 | Msa0240420:intron | 55.0% | |
| AGATGGAAGAAGGGTGAGCC+AGG | - | chr2_2:15375429-15375448 | Msa0240420:CDS | 55.0% | |
| GATGGAAGAAGGGTGAGCCA+GGG | - | chr2_2:15375430-15375449 | Msa0240420:CDS | 55.0% | |
| CACTCCTGACTCCCAAAGCT+AGG | + | chr2_2:15375501-15375520 | None:intergenic | 55.0% | |
| !! | CTAGCTTTGGGAGTCAGGAG+TGG | - | chr2_2:15375499-15375518 | Msa0240420:intron | 55.0% |
| !! | AGCTTTGGGAGTCAGGAGTG+GGG | - | chr2_2:15375501-15375520 | Msa0240420:intron | 55.0% |
| !! | GAGCTTTGGGGCTCTACTGA+AGG | - | chr2_2:15375573-15375592 | Msa0240420:intron | 55.0% |
| GGCACCATGGCATTTCATGG+TGG | + | chr2_2:15375703-15375722 | None:intergenic | 55.0% | |
| GGTGGCACCATGGCATTTCA+TGG | + | chr2_2:15375706-15375725 | None:intergenic | 55.0% | |
| TGCCACCGTGCTTCGCAAAT+TGG | - | chr2_2:15375719-15375738 | Msa0240420:CDS | 55.0% | |
| TCCTTCGCTGCAATCTGCCA+AGG | - | chr2_2:15375762-15375781 | Msa0240420:CDS | 55.0% | |
| TGGTGGTAGAAGAGGAGGCG+CGG | + | chr2_2:15371353-15371372 | None:intergenic | 60.0% | |
| ! | GTGACGGAGGTGGAAAGTGG+AGG | + | chr2_2:15371414-15371433 | None:intergenic | 60.0% |
| CCACCTCCGTCACTTCTCTG+CGG | - | chr2_2:15371421-15371440 | Msa0240420:CDS | 60.0% | |
| ATGCCGCAGAGAAGTGACGG+AGG | + | chr2_2:15371427-15371446 | None:intergenic | 60.0% | |
| CCGCTCTGACAGGGGTGATT+TGG | + | chr2_2:15371513-15371532 | None:intergenic | 60.0% | |
| GGCAACGTCAAAGGCTCGCA+GGG | + | chr2_2:15371918-15371937 | None:intergenic | 60.0% | |
| TTCGCAGGGCCTCCATAGCA+CGG | - | chr2_2:15374534-15374553 | Msa0240420:CDS | 60.0% | |
| !! | GCTTTGGGAGTCAGGAGTGG+GGG | - | chr2_2:15375502-15375521 | Msa0240420:intron | 60.0% |
| GGCCAATTTGCGAAGCACGG+TGG | + | chr2_2:15375724-15375743 | None:intergenic | 60.0% | |
| GCCTTGGCAGATTGCAGCGA+AGG | + | chr2_2:15375766-15375785 | None:intergenic | 60.0% | |
| ! | CCGCAGAGAAGTGACGGAGG+TGG | + | chr2_2:15371424-15371443 | None:intergenic | 65.0% |
| CGGCAACGTCAAAGGCTCGC+AGG | + | chr2_2:15371919-15371938 | None:intergenic | 65.0% | |
| GGAAGAAGGGTGAGCCAGGG+AGG | - | chr2_2:15375433-15375452 | Msa0240420:CDS | 65.0% | |
| TCAGGAGTGGGGGAGAGCGA+GGG | - | chr2_2:15375512-15375531 | Msa0240420:intron | 65.0% | |
| TGCGAAGCACGGTGGCACCA+TGG | + | chr2_2:15375716-15375735 | None:intergenic | 65.0% | |
| GTCAGGAGTGGGGGAGAGCG+AGG | - | chr2_2:15375511-15375530 | Msa0240420:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 15371332 | 15376030 | 15371332 | ID=Msa0240420;Name=Msa0240420 |
| chr2_2 | mRNA | 15371332 | 15376030 | 15371332 | ID=Msa0240420-mRNA-1;Parent=Msa0240420;Name=Msa0240420-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.2|0|0.83|1|1|6|0|412 |
| chr2_2 | exon | 15375620 | 15376030 | 15375620 | ID=Msa0240420-mRNA-1:exon:6407;Parent=Msa0240420-mRNA-1 |
| chr2_2 | exon | 15375281 | 15375502 | 15375281 | ID=Msa0240420-mRNA-1:exon:6406;Parent=Msa0240420-mRNA-1 |
| chr2_2 | exon | 15374256 | 15374594 | 15374256 | ID=Msa0240420-mRNA-1:exon:6405;Parent=Msa0240420-mRNA-1 |
| chr2_2 | exon | 15372764 | 15372835 | 15372764 | ID=Msa0240420-mRNA-1:exon:6404;Parent=Msa0240420-mRNA-1 |
| chr2_2 | exon | 15372207 | 15372266 | 15372207 | ID=Msa0240420-mRNA-1:exon:6403;Parent=Msa0240420-mRNA-1 |
| chr2_2 | exon | 15371332 | 15371466 | 15371332 | ID=Msa0240420-mRNA-1:exon:6402;Parent=Msa0240420-mRNA-1 |
| chr2_2 | CDS | 15375620 | 15376030 | 15375620 | ID=Msa0240420-mRNA-1:cds;Parent=Msa0240420-mRNA-1 |
| chr2_2 | CDS | 15375281 | 15375502 | 15375281 | ID=Msa0240420-mRNA-1:cds;Parent=Msa0240420-mRNA-1 |
| chr2_2 | CDS | 15374256 | 15374594 | 15374256 | ID=Msa0240420-mRNA-1:cds;Parent=Msa0240420-mRNA-1 |
| chr2_2 | CDS | 15372764 | 15372835 | 15372764 | ID=Msa0240420-mRNA-1:cds;Parent=Msa0240420-mRNA-1 |
| chr2_2 | CDS | 15372207 | 15372266 | 15372207 | ID=Msa0240420-mRNA-1:cds;Parent=Msa0240420-mRNA-1 |
| chr2_2 | CDS | 15371332 | 15371466 | 15371332 | ID=Msa0240420-mRNA-1:cds;Parent=Msa0240420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
