AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0209040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209040 MtrunA17_Chr2g0307471 93.048 561 22 2 1 548 1 557 0.0 996
Msa0209040 MtrunA17_Chr4g0062301 72.860 479 114 3 82 546 84 560 0.0 707
Msa0209040 MtrunA17_Chr4g0062321 75.431 232 56 1 169 399 4 235 2.75e-127 372
Msa0209040 MtrunA17_Chr8g0354761 43.659 410 215 9 120 521 46 447 4.66e-101 312
Msa0209040 MtrunA17_Chr5g0443991 42.143 420 233 6 110 524 104 518 5.12e-97 311
Msa0209040 MtrunA17_Chr2g0301281 35.739 568 251 14 88 544 34 598 2.06e-93 297
Msa0209040 MtrunA17_Chr4g0034411 42.689 424 225 11 110 524 104 518 5.53e-93 300
Msa0209040 MtrunA17_Chr4g0029191 35.512 566 251 14 90 544 39 601 1.14e-91 293
Msa0209040 MtrunA17_Chr3g0114081 35.220 477 272 10 82 524 1 474 4.76e-80 262
Msa0209040 MtrunA17_Chr6g0483491 38.904 365 193 8 94 440 9 361 4.91e-71 234
Msa0209040 MtrunA17_Chr7g0236841 38.904 365 193 8 94 440 9 361 3.21e-70 232
Msa0209040 MtrunA17_Chr8g0347161 32.014 556 308 21 24 525 12 551 1.38e-65 223
Msa0209040 MtrunA17_Chr8g0347151 34.549 466 260 14 91 524 197 649 1.09e-63 220
Msa0209040 MtrunA17_Chr8g0386451 32.301 452 267 13 75 501 273 710 2.85e-62 218
Msa0209040 MtrunA17_Chr4g0062331 78.070 114 25 0 398 511 3 116 4.15e-60 197
Msa0209040 MtrunA17_Chr2g0300291 31.429 455 267 8 53 477 99 538 1.26e-59 210
Msa0209040 MtrunA17_Chr8g0347171 31.939 526 263 19 42 496 78 579 2.12e-59 207
Msa0209040 MtrunA17_Chr3g0098121 31.818 396 237 8 99 477 169 548 1.94e-53 193
Msa0209040 MtrunA17_Chr2g0330401 34.441 331 204 9 119 444 133 455 1.37e-50 181
Msa0209040 MtrunA17_Chr7g0247191 31.877 389 244 7 38 421 107 479 2.28e-49 178
Msa0209040 MtrunA17_Chr7g0247181 31.620 389 245 7 38 421 97 469 3.01e-49 177
Msa0209040 MtrunA17_Chr1g0200181 32.362 343 217 6 100 433 163 499 5.45e-49 178
Msa0209040 MtrunA17_Chr7g0247221 34.437 302 188 4 120 421 181 472 9.87e-49 176
Msa0209040 MtrunA17_Chr3g0107851 32.493 357 218 8 105 447 140 487 3.98e-47 172
Msa0209040 MtrunA17_Chr1g0157691 30.812 357 230 7 86 433 153 501 4.06e-47 173
Msa0209040 MtrunA17_Chr2g0310581 32.782 363 209 10 92 431 50 400 6.61e-46 168
Msa0209040 MtrunA17_Chr2g0277821 33.235 340 206 10 111 440 533 861 1.18e-45 172
Msa0209040 MtrunA17_Chr4g0040761 31.790 324 212 6 120 441 57 373 3.81e-45 170
Msa0209040 MtrunA17_Chr7g0271121 30.790 367 242 6 83 445 109 467 1.74e-43 165
Msa0209040 MtrunA17_Chr2g0293631 31.844 358 215 9 95 433 496 843 2.22e-43 166
Msa0209040 MtrunA17_Chr3g0095031 32.087 321 198 9 119 431 127 435 1.52e-42 160
Msa0209040 MtrunA17_Chr1g0193491 33.542 319 201 6 119 432 151 463 5.66e-42 159
Msa0209040 MtrunA17_Chr7g0270131 31.977 344 226 5 100 440 250 588 7.24e-42 160
Msa0209040 MtrunA17_Chr5g0442191 31.343 335 210 9 119 445 118 440 1.60e-41 157
Msa0209040 MtrunA17_Chr6g0449911 32.768 354 220 9 86 433 171 512 1.60e-41 159
Msa0209040 MtrunA17_Chr3g0121351 29.736 417 247 11 51 433 104 508 7.48e-41 156
Msa0209040 MtrunA17_Chr4g0076491 30.495 364 214 9 109 445 314 665 2.17e-40 155
Msa0209040 MtrunA17_Chr6g0449741 29.668 391 232 11 82 445 251 625 5.77e-40 154
Msa0209040 MtrunA17_Chr7g0236831 27.027 407 226 10 99 437 180 583 1.21e-38 151
Msa0209040 MtrunA17_Chr1g0176041 29.952 414 242 11 53 433 118 516 2.52e-38 149
Msa0209040 MtrunA17_Chr4g0070981 29.700 367 226 10 94 442 40 392 3.82e-38 145
Msa0209040 MtrunA17_Chr4g0063551 31.351 370 220 11 111 454 169 530 7.44e-38 148
Msa0209040 MtrunA17_Chr5g0429221 30.390 385 223 10 94 451 2 368 9.01e-38 144
Msa0209040 MtrunA17_Chr6g0475251 34.018 341 201 13 109 435 128 458 3.79e-37 146
Msa0209040 MtrunA17_Chr1g0204391 31.458 391 207 14 75 435 56 415 9.32e-37 144
Msa0209040 MtrunA17_Chr2g0299681 28.689 366 229 10 94 441 40 391 3.43e-36 139
Msa0209040 MtrunA17_Chr5g0409981 31.845 336 206 8 111 433 131 456 4.81e-36 141
Msa0209040 MtrunA17_Chr2g0329931 29.810 369 223 13 93 441 39 391 2.67e-35 137
Msa0209040 MtrunA17_Chr4g0058591 33.654 312 179 11 94 392 214 510 3.69e-34 135
Msa0209040 MtrunA17_Chr8g0342861 29.348 368 224 13 94 441 40 391 6.03e-34 133
Msa0209040 MtrunA17_Chr1g0149251 29.245 318 211 8 120 433 2 309 5.05e-33 129
Msa0209040 MtrunA17_Chr6g0466611 29.600 375 214 14 95 431 142 504 8.18e-33 133
Msa0209040 MtrunA17_Chr4g0003441 29.305 331 213 9 107 433 140 453 1.65e-32 130
Msa0209040 MtrunA17_Chr3g0145781 29.134 381 230 15 94 442 144 516 3.03e-32 130
Msa0209040 MtrunA17_Chr2g0297261 27.385 325 225 7 119 442 71 385 4.09e-32 127
Msa0209040 MtrunA17_Chr6g0461751 28.721 383 240 14 86 450 146 513 5.60e-32 129
Msa0209040 MtrunA17_Chr7g0263771 28.226 372 250 10 74 442 127 484 2.80e-31 128
Msa0209040 MtrunA17_Chr1g0155201 31.183 279 160 7 197 472 4 253 1.35e-29 119
Msa0209040 MtrunA17_Chr1g0192021 24.427 393 225 10 93 422 24 407 3.46e-25 109
Msa0209040 MtrunA17_Chr4g0004301 26.371 383 200 12 119 431 70 440 3.71e-25 108
Msa0209040 MtrunA17_Chr5g0434301 26.110 383 201 12 119 431 70 440 2.29e-24 106
Msa0209040 MtrunA17_Chr2g0309551 23.896 498 300 13 36 462 51 540 6.46e-24 105
Msa0209040 MtrunA17_Chr4g0039471 35.176 199 109 5 95 278 223 416 1.81e-22 100
Msa0209040 MtrunA17_Chr8g0349951 37.241 145 79 4 94 234 22 158 8.95e-19 83.6
Msa0209040 MtrunA17_Chr4g0074521 26.702 382 239 15 70 421 71 441 1.01e-17 86.3
Msa0209040 MtrunA17_Chr8g0342851 25.215 349 206 10 119 464 10 306 2.19e-17 83.6
Msa0209040 MtrunA17_Chr1g0179761 26.822 343 211 12 119 434 120 449 6.78e-17 83.6
Msa0209040 MtrunA17_Chr1g0169331 23.659 317 200 9 157 437 62 372 2.46e-15 78.2
Msa0209040 MtrunA17_Chr8g0364251 37.634 93 57 1 330 422 437 528 3.81e-14 75.1
Msa0209040 MtrunA17_Chr8g0364251 26.562 192 110 7 93 257 89 276 3.19e-11 65.9
Msa0209040 MtrunA17_Chr3g0137901 30.612 147 98 2 287 433 3 145 9.85e-14 69.7
Msa0209040 MtrunA17_Chr3g0137891 29.412 170 99 6 119 279 1 158 4.84e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209040 AT3G18600.1 63.415 533 172 4 26 537 13 543 0.0 664
Msa0209040 AT5G65900.1 63.656 465 153 4 88 538 148 610 0.0 620
Msa0209040 AT5G54910.1 40.179 448 242 11 96 524 73 513 1.12e-96 310
Msa0209040 AT2G40700.1 35.766 548 240 13 88 524 24 570 5.95e-85 276
Msa0209040 AT5G05450.1 36.300 427 245 9 119 525 54 473 2.50e-76 253
Msa0209040 AT1G71370.1 34.831 445 268 8 94 525 29 464 4.40e-76 251
Msa0209040 AT5G60990.1 39.181 342 195 5 99 431 27 364 4.99e-67 224
Msa0209040 AT5G08620.1 31.099 537 320 12 32 528 7 533 1.21e-65 223
Msa0209040 AT5G63630.1 33.724 427 258 9 87 498 60 476 1.20e-60 209
Msa0209040 AT5G08610.1 31.749 463 285 10 91 528 379 835 1.96e-60 214
Msa0209040 AT5G63630.2 33.264 484 283 13 70 524 225 697 2.85e-60 212
Msa0209040 AT2G07750.1 31.798 456 274 15 91 524 385 825 1.63e-57 206
Msa0209040 AT1G63250.1 31.006 487 282 16 78 524 306 778 1.78e-56 202
Msa0209040 AT4G16630.1 32.212 416 242 12 56 444 125 527 1.06e-53 195
Msa0209040 AT5G63120.2 34.324 370 216 12 86 444 172 525 4.69e-51 184
Msa0209040 AT1G77030.1 32.500 360 231 8 120 475 67 418 2.39e-50 186
Msa0209040 AT1G20920.4 33.420 386 222 15 111 476 559 929 1.07e-49 185
Msa0209040 AT1G20920.6 33.420 386 222 15 111 476 559 929 1.07e-49 185
Msa0209040 AT1G20920.3 33.420 386 222 15 111 476 559 929 1.07e-49 185
Msa0209040 AT1G20920.7 33.420 386 222 15 111 476 559 929 1.07e-49 185
Msa0209040 AT1G20920.5 33.420 386 222 15 111 476 559 929 1.07e-49 185
Msa0209040 AT1G20920.1 33.420 386 222 15 111 476 559 929 1.07e-49 185
Msa0209040 AT1G20920.2 33.420 386 222 15 111 476 221 591 3.02e-49 182
Msa0209040 AT1G16280.1 32.308 390 227 11 69 436 34 408 1.75e-48 175
Msa0209040 AT4G00660.1 33.993 303 190 5 119 421 169 461 6.31e-48 174
Msa0209040 AT4G00660.2 33.993 303 190 5 119 421 169 461 6.31e-48 174
Msa0209040 AT5G51280.1 32.653 343 216 8 100 433 165 501 1.81e-46 172
Msa0209040 AT1G55150.1 30.707 368 231 9 94 444 99 459 3.22e-46 169
Msa0209040 AT1G71280.1 34.177 316 168 5 94 400 30 314 3.78e-46 168
Msa0209040 AT1G71280.2 33.048 351 179 7 94 435 30 333 3.88e-46 165
Msa0209040 AT3G06480.1 32.410 361 226 10 86 440 442 790 6.75e-46 174
Msa0209040 AT1G55150.2 30.707 368 231 9 94 444 124 484 7.80e-46 169
Msa0209040 AT3G61240.2 33.333 303 190 5 120 421 163 454 2.17e-45 167
Msa0209040 AT3G61240.1 33.333 303 190 5 120 421 163 454 2.17e-45 167
Msa0209040 AT2G45810.1 30.769 390 246 9 39 421 112 484 3.69e-45 167
Msa0209040 AT4G33370.1 32.362 343 217 6 100 433 116 452 2.06e-44 165
Msa0209040 AT5G26742.1 29.459 370 236 7 95 445 103 466 5.07e-42 161
Msa0209040 AT5G26742.2 29.459 370 236 7 95 445 103 466 5.10e-42 161
Msa0209040 AT5G14610.7 30.607 379 242 10 87 455 41 408 6.23e-42 158
Msa0209040 AT5G14610.3 30.607 379 242 10 87 455 41 408 6.23e-42 158
Msa0209040 AT5G14610.2 30.894 369 237 10 98 455 178 539 9.57e-42 159
Msa0209040 AT5G14610.6 30.894 369 237 10 98 455 178 539 9.57e-42 159
Msa0209040 AT5G14610.5 30.894 369 237 10 98 455 186 547 1.64e-41 159
Msa0209040 AT3G01540.4 31.965 341 218 9 98 433 175 506 9.40e-41 156
Msa0209040 AT3G01540.2 31.965 341 218 9 98 433 175 506 9.40e-41 156
Msa0209040 AT3G01540.3 31.965 341 218 9 98 433 175 506 9.40e-41 156
Msa0209040 AT5G14610.1 31.161 353 228 8 85 433 236 577 9.56e-41 157
Msa0209040 AT3G01540.1 31.965 341 218 9 98 433 175 506 9.67e-41 156
Msa0209040 AT2G47330.1 31.680 363 227 6 94 440 228 585 1.20e-40 157
Msa0209040 AT5G26742.3 30.631 333 219 6 119 445 47 373 1.53e-40 156
Msa0209040 AT3G22310.2 32.198 323 197 10 119 432 154 463 3.20e-40 154
Msa0209040 AT3G22310.1 32.198 323 197 10 119 432 154 463 3.74e-40 154
Msa0209040 AT1G31970.1 33.636 330 197 8 119 435 152 472 4.53e-40 153
Msa0209040 AT3G22330.1 31.677 322 200 9 119 432 142 451 5.51e-40 154
Msa0209040 AT2G33730.1 30.878 353 203 10 109 433 341 680 1.17e-39 154
Msa0209040 AT5G63120.1 33.648 318 185 11 86 392 172 474 4.03e-39 149
Msa0209040 AT3G09620.2 32.213 357 184 14 111 451 427 741 4.94e-39 153
Msa0209040 AT5G63120.3 33.648 318 185 11 86 392 172 474 5.20e-39 149
Msa0209040 AT5G63120.4 33.648 318 185 11 86 392 172 474 5.20e-39 149
Msa0209040 AT5G63120.5 33.648 318 185 11 86 392 172 474 5.20e-39 149
Msa0209040 AT3G09620.1 32.213 357 184 14 111 451 426 740 6.32e-39 152
Msa0209040 AT3G58570.1 32.653 343 202 10 111 433 176 509 4.47e-38 149
Msa0209040 AT3G06480.2 32.609 322 200 9 86 401 442 752 4.69e-38 149
Msa0209040 AT3G13920.3 29.973 367 225 12 93 441 28 380 9.93e-38 144
Msa0209040 AT3G58510.1 32.849 344 204 12 119 444 189 523 1.20e-37 147
Msa0209040 AT3G58510.3 32.849 344 204 12 119 444 189 523 1.20e-37 147
Msa0209040 AT3G58510.2 32.849 344 204 12 119 444 189 523 1.20e-37 147
Msa0209040 AT3G13920.1 29.973 367 225 12 93 441 38 390 1.33e-37 144
Msa0209040 AT2G42520.2 30.282 426 249 14 43 433 110 522 3.32e-37 146
Msa0209040 AT2G42520.1 30.282 426 249 14 43 433 110 522 3.32e-37 146
Msa0209040 AT2G42520.3 30.282 426 249 14 43 433 110 522 3.32e-37 146
Msa0209040 AT3G13920.2 29.973 367 225 12 93 441 38 390 3.87e-37 142
Msa0209040 AT3G13920.5 29.973 367 225 12 93 441 42 394 4.03e-37 142
Msa0209040 AT1G54270.1 29.428 367 227 11 93 441 38 390 1.18e-36 141
Msa0209040 AT3G13920.4 30.110 362 226 13 93 441 38 385 2.76e-36 140
Msa0209040 AT1G28180.1 31.672 341 206 11 109 437 1 326 7.38e-36 138
Msa0209040 AT3G06980.1 27.628 409 248 10 78 444 358 760 2.90e-35 141
Msa0209040 AT1G54270.2 29.558 362 228 12 93 441 38 385 3.25e-35 137
Msa0209040 AT1G72730.1 30.124 322 208 9 120 437 80 388 3.97e-35 137
Msa0209040 AT5G11170.2 30.530 321 203 11 120 433 2 309 1.50e-34 134
Msa0209040 AT3G16840.2 25.837 418 239 9 119 468 230 644 2.30e-34 139
Msa0209040 AT3G16840.1 25.837 418 239 9 119 468 229 643 2.43e-34 139
Msa0209040 AT3G02065.1 31.056 322 208 9 119 433 11 325 2.74e-34 133
Msa0209040 AT5G14610.4 30.100 299 202 5 98 394 186 479 4.56e-34 135
Msa0209040 AT5G11170.1 30.539 334 205 12 107 433 79 392 5.11e-34 134
Msa0209040 AT5G11200.1 30.539 334 205 12 107 433 79 392 5.11e-34 134
Msa0209040 AT3G19760.1 26.994 326 225 8 119 442 73 387 6.18e-34 133
Msa0209040 AT3G02065.3 30.295 373 236 11 86 447 117 476 6.22e-34 135
Msa0209040 AT3G02065.2 30.295 373 236 11 86 447 117 476 6.22e-34 135
Msa0209040 AT4G09730.1 28.256 453 250 20 94 506 112 529 9.02e-34 136
Msa0209040 AT4G15850.1 26.862 376 206 10 119 431 73 442 1.89e-33 134
Msa0209040 AT1G51380.1 25.745 369 248 10 89 442 17 374 5.45e-33 130
Msa0209040 AT5G62190.1 31.776 321 201 9 120 430 135 447 9.35e-33 133
Msa0209040 AT3G09720.2 28.011 357 238 9 90 442 152 493 4.60e-30 124
Msa0209040 AT3G09720.1 28.011 357 238 9 90 442 152 493 4.60e-30 124
Msa0209040 AT5G11200.3 27.614 373 206 13 107 433 79 433 4.48e-28 117
Msa0209040 AT1G12770.2 23.765 425 255 11 71 430 88 508 5.16e-23 103
Msa0209040 AT1G12770.1 23.765 425 255 11 71 430 88 508 5.16e-23 103
Msa0209040 AT4G34910.1 24.103 390 230 11 94 422 46 430 1.04e-22 102
Msa0209040 AT3G53110.1 29.275 345 216 14 107 434 119 452 5.35e-19 90.5
Msa0209040 AT5G19210.2 24.810 395 261 12 53 421 50 434 1.10e-16 83.2
Msa0209040 AT1G51380.2 25.279 269 176 9 89 342 17 275 8.14e-16 78.6
Msa0209040 AT5G11200.2 31.293 147 97 2 287 433 309 451 7.22e-13 71.2
Msa0209040 AT5G11200.2 30.168 179 103 9 107 279 79 241 3.88e-12 68.9
Msa0209040 AT1G59990.1 33.981 103 66 2 329 430 425 526 7.36e-13 71.6
Msa0209040 AT1G59990.2 33.981 103 66 2 329 430 425 526 8.88e-13 71.2

Find 127 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCTCACTATGTAAAAT+TGG 0.127621 2_1:+45812907 None:intergenic
ACTACCAGAAATTCAATATT+AGG 0.152135 2_1:-45820530 None:intergenic
CAAACTTTGGGAAGGGTTAT+TGG 0.183409 2_1:-45818946 Msa0209040:CDS
TGTTCACCGCCTTGATTTAC+AGG 0.222982 2_1:-45813879 Msa0209040:intron
GGGATTCCTGCCAAAACTTT+GGG 0.274779 2_1:+45812928 None:intergenic
ATACCTTTGGAAGTATATTA+AGG 0.291178 2_1:+45818101 None:intergenic
AGCTTTGCAAAAGTTGAAAA+AGG 0.292081 2_1:+45816684 None:intergenic
GATTCGGCCATGATTGGTTT+TGG 0.300223 2_1:+45820410 None:intergenic
GCTGATCTTCTTAAGTTCAT+TGG 0.307041 2_1:-45816760 Msa0209040:CDS
CGAAGAAATTGCAATTCTTC+AGG 0.312311 2_1:+45814436 None:intergenic
TTAGACTGTTTAAATATTCA+TGG 0.317326 2_1:-45816736 Msa0209040:CDS
GAAGCTGAGCGCATTGTTAA+AGG 0.326789 2_1:-45818904 Msa0209040:CDS
AACTAGAGAGCTTGCCATTC+AGG 0.336917 2_1:-45819133 Msa0209040:intron
CTACCAGAAATTCAATATTA+GGG 0.340394 2_1:-45820529 None:intergenic
ATTGCAATTCTTCAGGAATC+AGG 0.344105 2_1:+45814443 None:intergenic
TTCCTGCCAAAACTTTGGGG+TGG 0.344711 2_1:+45812932 None:intergenic
CTCTGGCCAAAGAGGCTTAT+AGG 0.347055 2_1:-45813949 Msa0209040:CDS
CACTGTTGAAGGATTGGAAC+AGG 0.351265 2_1:-45816899 Msa0209040:CDS
TCTTGTAACTGTCGTTGATT+TGG 0.359039 2_1:+45820357 None:intergenic
GGCTTATAGGTCATATATAT+TGG 0.360206 2_1:-45813936 Msa0209040:CDS
AGGTTATCATTCACAAACTT+TGG 0.361306 2_1:-45818959 Msa0209040:CDS
ACTTATGAAGCATCGTTTGC+AGG 0.366178 2_1:-45813002 Msa0209040:three_prime_UTR
GGTGCTGCGAGGACGGGTTC+TGG 0.370158 2_1:-45819249 Msa0209040:CDS
TGGGATTCCTGCCAAAACTT+TGG 0.370427 2_1:+45812927 None:intergenic
TTGTCGGATTCGGCCATGAT+TGG 0.371208 2_1:+45820404 None:intergenic
ATATGACCTATAAGCCTCTT+TGG 0.372379 2_1:+45813943 None:intergenic
CTGCCAAAACTTTGGGGTGG+GGG 0.378103 2_1:+45812935 None:intergenic
TCCTGCCAAAACTTTGGGGT+GGG 0.383583 2_1:+45812933 None:intergenic
TGATGAAGCAGACAGGATAT+TGG 0.387298 2_1:-45818155 Msa0209040:CDS
TTGATTAGAAAGTTTAAGAC+TGG 0.391505 2_1:-45812859 Msa0209040:three_prime_UTR
TCTGATCCTGCATTTCCAAT+TGG 0.392292 2_1:-45812783 Msa0209040:three_prime_UTR
GTGGTTGTCGTTGTCGGATT+CGG 0.395506 2_1:+45820394 None:intergenic
GAGCTGTTCTACCAACTCTA+TGG 0.395862 2_1:+45814500 None:intergenic
GCAATTTCTTCGCTACTTGA+AGG 0.402234 2_1:-45814425 Msa0209040:intron
GGTTATCATTCACAAACTTT+GGG 0.404251 2_1:-45818958 Msa0209040:CDS
CTATCTCACTATGTAAAATT+GGG 0.408169 2_1:+45812908 None:intergenic
AAAATGTTACCTGAGTCATA+TGG 0.414115 2_1:+45820054 None:intergenic
TATTGGTGGTGTGGGTAGAA+AGG 0.417674 2_1:-45818929 Msa0209040:CDS
TGAGATGTGGTTGTCGTTGT+CGG 0.421675 2_1:+45820388 None:intergenic
TGTTCTTGGTGCTGCGAGGA+CGG 0.423795 2_1:-45819256 Msa0209040:CDS
ATCTAACCAATTGGAAATGC+AGG 0.424830 2_1:+45812777 None:intergenic
AGAAGCACCTTTGGTTCATC+AGG 0.435836 2_1:+45814619 None:intergenic
GTTCTTGGTGCTGCGAGGAC+GGG 0.441728 2_1:-45819255 Msa0209040:CDS
ATTGGTGGTGTGGGTAGAAA+GGG 0.443352 2_1:-45818928 Msa0209040:CDS
GGAAGGGTTATTGGTGGTGT+GGG 0.448057 2_1:-45818937 Msa0209040:CDS
GGGAAGGGTTATTGGTGGTG+TGG 0.455388 2_1:-45818938 Msa0209040:CDS
GACCACCTTCAGAATACAAA+AGG 0.463946 2_1:-45818844 Msa0209040:CDS
GAAAACAAAAGCAGAATTCT+CGG 0.465182 2_1:-45816714 Msa0209040:CDS
ATGTATGGCTGAACTGAGTA+TGG 0.469104 2_1:+45812694 None:intergenic
GAGAAACAGTGTCTAGCTGC+GGG 0.475718 2_1:+45820492 None:intergenic
TTCACACCTCGTAATGGAAC+TGG 0.480851 2_1:-45819174 Msa0209040:CDS
TTCAAATGTACAGTCTCAAC+TGG 0.484689 2_1:-45814098 Msa0209040:intron
GGAGGAAGAAGACATTGATC+AGG 0.484698 2_1:-45813069 Msa0209040:exon
GTCTATGTTGATGTAGATGT+TGG 0.487585 2_1:-45817019 Msa0209040:CDS
ATGTTCAGACTTATCTTCGG+TGG 0.487865 2_1:+45813138 None:intergenic
GCAGGTCACTGTTGAAGGAT+TGG 0.488024 2_1:-45816905 Msa0209040:intron
CCTGCCAAAACTTTGGGGTG+GGG 0.488767 2_1:+45812934 None:intergenic
TTCAGCCACACAAACAAAGA+AGG 0.488772 2_1:-45817305 Msa0209040:intron
TATTTGCTGTTGTAGTTCGC+TGG 0.489927 2_1:-45812640 Msa0209040:three_prime_UTR
GTTATCTCAACGTACTTCTC+AGG 0.490712 2_1:-45820099 Msa0209040:CDS
ACCAAAACCAAAACCAATCA+TGG 0.490931 2_1:-45820417 Msa0209040:exon
TTGATGGGAAAGGATGTTCT+TGG 0.491150 2_1:-45819270 Msa0209040:intron
AAATGTTACCTGAGTCATAT+GGG 0.494393 2_1:+45820055 None:intergenic
AACAACAAAACGCTTGGCAC+AGG 0.502377 2_1:+45816861 None:intergenic
TCTATGTTCAGACTTATCTT+CGG 0.504391 2_1:+45813135 None:intergenic
TCGATGCAGGTCACTGTTGA+AGG 0.512599 2_1:-45816910 Msa0209040:intron
CGTTTATCATTTGAACACTC+TGG 0.518088 2_1:-45813966 Msa0209040:CDS
ATAGCAGTGCTTCGAAGCAT+AGG 0.519510 2_1:-45813113 Msa0209040:CDS
ATCATTCACAAACTTTGGGA+AGG 0.522110 2_1:-45818954 Msa0209040:CDS
GCTCGTGGGGAAGGTGGAAA+AGG 0.522429 2_1:-45814481 Msa0209040:CDS
GTGCAATTCACACCTCGTAA+TGG 0.522434 2_1:-45819180 Msa0209040:CDS
TTGTACAACAATTCCACAGC+TGG 0.523673 2_1:+45819204 None:intergenic
TGTACTGATGTTGCTGCTCG+TGG 0.524024 2_1:-45816643 Msa0209040:CDS
AAAATATAACATACCACAGC+AGG 0.526613 2_1:+45816610 None:intergenic
TGTTCAGACTTATCTTCGGT+GGG 0.527440 2_1:+45813139 None:intergenic
TACTATCAGAAAGAGATGTA+TGG 0.530992 2_1:+45812679 None:intergenic
ATATAATGCACATTCTATGA+AGG 0.531303 2_1:-45813912 Msa0209040:CDS
TGGTTAATTTCAGGCAGCAA+AGG 0.534234 2_1:-45814158 Msa0209040:intron
TGAAGCTGCTGGTTGTTCTG+TGG 0.536565 2_1:+45820464 None:intergenic
ACATCTACATCAACATAGAC+AGG 0.540616 2_1:+45817022 None:intergenic
TGAATGGCAAGCTCTCTAGT+TGG 0.540963 2_1:+45819135 None:intergenic
GGTAGAACAGCTCGTGGGGA+AGG 0.544261 2_1:-45814490 Msa0209040:CDS
ACAAACCTTCTTTGTTTGTG+TGG 0.544416 2_1:+45817300 None:intergenic
AAAGTTGTACCTGTAAATCA+AGG 0.551261 2_1:+45813870 None:intergenic
GAAGAGAAGAACGATAAAGA+TGG 0.556284 2_1:-45820212 Msa0209040:CDS
AGCACCTTTGGTTCATCAGG+TGG 0.559062 2_1:+45814622 None:intergenic
TCATTCACAAACTTTGGGAA+GGG 0.560825 2_1:-45818953 Msa0209040:CDS
CAGGAATATATCCATAGAGT+TGG 0.562337 2_1:-45814511 Msa0209040:CDS
TCATGATTGATGAAGCAGAC+AGG 0.562765 2_1:-45818162 Msa0209040:CDS
GATATTGGAATCAAACTTCG+AGG 0.564037 2_1:-45818140 Msa0209040:CDS
TTTGAACACTCTGGCCAAAG+AGG 0.565593 2_1:-45813957 Msa0209040:CDS
TCAAATGCATACTCTTTCAC+AGG 0.570584 2_1:+45814133 None:intergenic
AGAACAGCTCGTGGGGAAGG+TGG 0.571711 2_1:-45814487 Msa0209040:CDS
GATCCTTAATATACTTCCAA+AGG 0.575304 2_1:-45818104 Msa0209040:intron
TCTATGTTGATGTAGATGTT+GGG 0.575438 2_1:-45817018 Msa0209040:CDS
AAAGATATGCAGACTATAAG+CGG 0.576819 2_1:-45813027 Msa0209040:three_prime_UTR
AGCATCGTTTGCAGGAGACA+TGG 0.576991 2_1:-45812994 Msa0209040:three_prime_UTR
ATACAGAACAACAAAACGCT+TGG 0.583322 2_1:+45816855 None:intergenic
ACTTTGGGAAGGGTTATTGG+TGG 0.589313 2_1:-45818943 Msa0209040:CDS
GGATTCCTGCCAAAACTTTG+GGG 0.589827 2_1:+45812929 None:intergenic
TGGGTTTGTAAAACAGAATG+AGG 0.590759 2_1:+45813158 None:intergenic
TTGCTGTTGTAGTTCGCTGG+TGG 0.594769 2_1:-45812637 Msa0209040:three_prime_UTR
AATCTGTTGATTGCAACGCC+TGG 0.596623 2_1:-45818877 Msa0209040:CDS
TGTAGATGTTGGGAGAGAAA+AGG 0.599377 2_1:-45817008 Msa0209040:intron
TGGTGAAGCAATGAAGCTGC+TGG 0.606760 2_1:+45820453 None:intergenic
ACAACAAAACGCTTGGCACA+GGG 0.609917 2_1:+45816862 None:intergenic
AGGTGTCTGAAAAGACAAGC+GGG 0.623455 2_1:+45817045 None:intergenic
TGAGAAACAGTGTCTAGCTG+CGG 0.625550 2_1:+45820491 None:intergenic
GTGGCGAGTGAGCTAATGAA+AGG 0.627012 2_1:-45818979 Msa0209040:CDS
TGATCCACCTGATGAACCAA+AGG 0.628732 2_1:-45814626 Msa0209040:intron
AGCATGTGTGTATACCTGAA+TGG 0.632411 2_1:+45819119 None:intergenic
GAGTTGGTAGAACAGCTCGT+GGG 0.632706 2_1:-45814495 Msa0209040:CDS
AGGTGGTCAAGAAGACGACC+AGG 0.633657 2_1:+45818859 None:intergenic
AGTTGGTAGAACAGCTCGTG+GGG 0.633736 2_1:-45814494 Msa0209040:CDS
AGAGTTGGTAGAACAGCTCG+TGG 0.642971 2_1:-45814496 Msa0209040:CDS
TGGACTTGACATACCTGCTG+TGG 0.647715 2_1:-45816623 Msa0209040:intron
AGTGTTCAAATGATAAACGC+TGG 0.651201 2_1:+45813970 None:intergenic
GAGGTGTCTGAAAAGACAAG+CGG 0.655705 2_1:+45817044 None:intergenic
TGAACTTAAGAAGATCAGCA+TGG 0.656163 2_1:+45816764 None:intergenic
TCATTACTCAGAATTCCAGA+AGG 0.674765 2_1:+45820140 None:intergenic
ACTGTTGAAGGATTGGAACA+GGG 0.682019 2_1:-45816898 Msa0209040:CDS
AGGATGTTCTTGGTGCTGCG+AGG 0.692441 2_1:-45819260 Msa0209040:CDS
ATTACACCAGTTCCATTACG+AGG 0.692682 2_1:+45819168 None:intergenic
ATTGGAATCAAACTTCGAGG+AGG 0.698846 2_1:-45818137 Msa0209040:CDS
TCTACATCAACATAGACAGG+AGG 0.714076 2_1:+45817025 None:intergenic
AGAAACAGTGTCTAGCTGCG+GGG 0.741896 2_1:+45820493 None:intergenic
GTTGTACCTGTAAATCAAGG+CGG 0.751531 2_1:+45813873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTAATTAATCAAAT+AGG - chr2_1:45813136-45813155 Msa0209040:CDS 10.0%
!! ATCAAAATAAAATTTAAACA+AGG + chr2_1:45814046-45814065 None:intergenic 10.0%
!! AACATATAATATAATCTATT+TGG + chr2_1:45815241-45815260 None:intergenic 10.0%
!!! GTATTAAATCATTTTTTAAT+TGG + chr2_1:45819084-45819103 None:intergenic 10.0%
!! ACAAAAAACAATTTAACATT+AGG + chr2_1:45813492-45813511 None:intergenic 15.0%
!!! GTTGTTTTTATAAACTATAT+TGG - chr2_1:45813521-45813540 Msa0209040:intron 15.0%
!! ATTCATATATAAAAACTTGA+AGG - chr2_1:45814313-45814332 Msa0209040:intron 15.0%
!! AAAAGTAATCATACATATAT+TGG + chr2_1:45815341-45815360 None:intergenic 15.0%
!! AAAATAAATAAAACTGAGTT+GGG + chr2_1:45817408-45817427 None:intergenic 15.0%
!! AAAAATAAATAAAACTGAGT+TGG + chr2_1:45817409-45817428 None:intergenic 15.0%
!! AAAAATAAAATTCATGATTC+AGG + chr2_1:45818955-45818974 None:intergenic 15.0%
!!! AATCATGAATTTTATTTTTG+TGG - chr2_1:45818956-45818975 Msa0209040:CDS 15.0%
!! AATAGGTAGTAATAAAATGA+AGG - chr2_1:45813153-45813172 Msa0209040:CDS 20.0%
!! AAGTTTGTAAATGTAGTTTA+TGG - chr2_1:45813303-45813322 Msa0209040:intron 20.0%
!! TATGCTAGATTATACAATAA+GGG + chr2_1:45813446-45813465 None:intergenic 20.0%
!! TTATGCTAGATTATACAATA+AGG + chr2_1:45813447-45813466 None:intergenic 20.0%
!! TTATTGTATAATCTAGCATA+AGG - chr2_1:45813446-45813465 Msa0209040:intron 20.0%
!! TCATAATTTACTTCAATGAA+TGG - chr2_1:45813804-45813823 Msa0209040:intron 20.0%
!! TGATTTGATTCTTAATTACA+TGG - chr2_1:45814344-45814363 Msa0209040:intron 20.0%
!!! ATGGTTTTGTAACAAATTAT+TGG - chr2_1:45814445-45814464 Msa0209040:CDS 20.0%
!!! TGGTTTTGTAACAAATTATT+GGG - chr2_1:45814446-45814465 Msa0209040:CDS 20.0%
!! AATAAGCAGAGATAAAAAAT+AGG + chr2_1:45814818-45814837 None:intergenic 20.0%
!! GATATATAAACTAACATAGA+AGG + chr2_1:45814892-45814911 None:intergenic 20.0%
!! TATATGAATTCATTACATAG+AGG - chr2_1:45815114-45815133 Msa0209040:intron 20.0%
!! ATATGAATTCATTACATAGA+GGG - chr2_1:45815115-45815134 Msa0209040:intron 20.0%
!!! TTGTAACATTCTAAAAATAG+TGG - chr2_1:45815506-45815525 Msa0209040:intron 20.0%
!! TATCTTGTTAATACGTTTAA+AGG - chr2_1:45815609-45815628 Msa0209040:intron 20.0%
!!! GCTTTTTTATATCTAGATTT+TGG - chr2_1:45815734-45815753 Msa0209040:intron 20.0%
!!! ATATTTTCCTGTTTAATTAC+AGG - chr2_1:45816054-45816073 Msa0209040:intron 20.0%
!! TTAGACTGTTTAAATATTCA+TGG - chr2_1:45816398-45816417 Msa0209040:intron 20.0%
!! AACAGTAGAATATATCTTAA+AGG - chr2_1:45816834-45816853 Msa0209040:CDS 20.0%
!!! GGTTTTTTGTTTTAAAAAAC+AGG + chr2_1:45817159-45817178 None:intergenic 20.0%
!!! GATTGAAAATAAAAGTGTTT+GGG + chr2_1:45817478-45817497 None:intergenic 20.0%
!!! TGATTGAAAATAAAAGTGTT+TGG + chr2_1:45817479-45817498 None:intergenic 20.0%
!!! CTAAGCTTTAAAAATAAAAG+AGG + chr2_1:45817508-45817527 None:intergenic 20.0%
!! TGTTATGCTTATATTGTAAA+GGG - chr2_1:45818835-45818854 Msa0209040:CDS 20.0%
!!! TTATTTTTGTGGTTAATTTC+AGG - chr2_1:45818967-45818986 Msa0209040:CDS 20.0%
!! TCGATAAAATTATAGTTTCT+GGG - chr2_1:45819608-45819627 Msa0209040:intron 20.0%
!! ACAAAAATAATCTAACCAAT+TGG + chr2_1:45820369-45820388 None:intergenic 20.0%
! GGTGTATTCATAAAATATGT+TGG - chr2_1:45813654-45813673 Msa0209040:intron 25.0%
! AAGTAAATTATGAGTCTGTT+TGG + chr2_1:45813797-45813816 None:intergenic 25.0%
!! TTTTCCTTCTAAACTACAAA+AGG + chr2_1:45814540-45814559 None:intergenic 25.0%
! TTGGGATTATCAATGTTAAT+TGG + chr2_1:45814608-45814627 None:intergenic 25.0%
! GGACATATACAAAAGAAAAA+GGG + chr2_1:45814797-45814816 None:intergenic 25.0%
! AGGACATATACAAAAGAAAA+AGG + chr2_1:45814798-45814817 None:intergenic 25.0%
!!! TCTGCTTATTTTTTTGTTGA+TGG - chr2_1:45814828-45814847 Msa0209040:intron 25.0%
!!! CTGCTTATTTTTTTGTTGAT+GGG - chr2_1:45814829-45814848 Msa0209040:intron 25.0%
! TTATATATCATTGCAACTTC+TGG - chr2_1:45814903-45814922 Msa0209040:intron 25.0%
!! ATACCTTTGGAAGTATATTA+AGG + chr2_1:45815036-45815055 None:intergenic 25.0%
!! TAATATACTTCCAAAGGTAT+TGG - chr2_1:45815036-45815055 Msa0209040:intron 25.0%
! TGTAAAGAAGAAACATGTAT+AGG - chr2_1:45815271-45815290 Msa0209040:intron 25.0%
!!! TATAGGTAACTTTTTTCAGA+AGG - chr2_1:45815288-45815307 Msa0209040:intron 25.0%
! ACAAGATGCTAAATAATTCA+AGG - chr2_1:45815372-45815391 Msa0209040:intron 25.0%
! ACAAGATACCACAAATATTT+GGG + chr2_1:45815597-45815616 None:intergenic 25.0%
! AACAAGATACCACAAATATT+TGG + chr2_1:45815598-45815617 None:intergenic 25.0%
! TGTTAATACGTTTAAAGGTA+TGG - chr2_1:45815614-45815633 Msa0209040:intron 25.0%
!!! TTTTTGAAAGTTGGAAATCT+TGG - chr2_1:45815991-45816010 Msa0209040:intron 25.0%
!!! TTTTGAAAGTTGGAAATCTT+GGG - chr2_1:45815992-45816011 Msa0209040:intron 25.0%
! TGTAAAGAAAATTTCAAAGG+AGG + chr2_1:45816174-45816193 None:intergenic 25.0%
! TGCTGTAAAGAAAATTTCAA+AGG + chr2_1:45816177-45816196 None:intergenic 25.0%
! ATACCAATCAAAAAAAGTGA+TGG - chr2_1:45816316-45816335 Msa0209040:intron 25.0%
! TGACAACTTAATTATATTGC+AGG + chr2_1:45816579-45816598 None:intergenic 25.0%
! TAGAATATATCTTAAAGGCT+TGG - chr2_1:45816839-45816858 Msa0209040:CDS 25.0%
! CTGAAATTTGGATGAAAAAT+AGG - chr2_1:45816864-45816883 Msa0209040:CDS 25.0%
!!! TTTTTTGCCTATATGTGAAT+TGG - chr2_1:45817282-45817301 Msa0209040:intron 25.0%
! ATAACAACCAATTCACATAT+AGG + chr2_1:45817292-45817311 None:intergenic 25.0%
! GTACAAAAGTTTCAACATAA+AGG - chr2_1:45817631-45817650 Msa0209040:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr2_1:45817773-45817792 Msa0209040:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG + chr2_1:45817908-45817927 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr2_1:45817915-45817934 Msa0209040:intron 25.0%
! TCAATAGAAATGCCAAAATA+AGG - chr2_1:45818038-45818057 Msa0209040:intron 25.0%
!!! CATTTTGTTCTTCCTTATTT+TGG + chr2_1:45818053-45818072 None:intergenic 25.0%
! TCAAAGAATGTCTAATTCTT+TGG + chr2_1:45818089-45818108 None:intergenic 25.0%
! TAGAGTTGTTCTGTTTAATT+TGG - chr2_1:45818348-45818367 Msa0209040:intron 25.0%
! TCTTAGTACTATTGTAAAAC+TGG - chr2_1:45818372-45818391 Msa0209040:intron 25.0%
!! GTTCTGTTAATTTGATATCA+TGG - chr2_1:45818428-45818447 Msa0209040:intron 25.0%
!!! TAAAAAATAAGAAGCACCTT+TGG + chr2_1:45818527-45818546 None:intergenic 25.0%
!!! AAGGTGCTTCTTATTTTTTA+TGG - chr2_1:45818527-45818546 Msa0209040:intron 25.0%
! GTCTAACATATGTTATTCTA+TGG - chr2_1:45818596-45818615 Msa0209040:intron 25.0%
!!! TATTGCAACTTTTAAGATCA+AGG + chr2_1:45818789-45818808 None:intergenic 25.0%
! GATCTTAAAAGTTGCAATAT+AGG - chr2_1:45818790-45818809 Msa0209040:intron 25.0%
! ATATAAGCATAACACATTCA+AGG + chr2_1:45818829-45818848 None:intergenic 25.0%
! GTGTTATGCTTATATTGTAA+AGG - chr2_1:45818834-45818853 Msa0209040:CDS 25.0%
! GTTATGCTTATATTGTAAAG+GGG - chr2_1:45818836-45818855 Msa0209040:CDS 25.0%
! TTATGCTTATATTGTAAAGG+GGG - chr2_1:45818837-45818856 Msa0209040:CDS 25.0%
!! CTAATTTTATACACTTCCAA+GGG + chr2_1:45818880-45818899 None:intergenic 25.0%
! ATATAATGCACATTCTATGA+AGG - chr2_1:45819222-45819241 Msa0209040:CDS 25.0%
!! TCTCATCACATTTTACATAA+TGG - chr2_1:45819286-45819305 Msa0209040:intron 25.0%
! TGAAACTAAAATGAGTAAGA+TGG - chr2_1:45819534-45819553 Msa0209040:intron 25.0%
! GTCGATAAAATTATAGTTTC+TGG - chr2_1:45819607-45819626 Msa0209040:intron 25.0%
! GAAGATAAATACAATTAGAG+TGG - chr2_1:45819634-45819653 Msa0209040:intron 25.0%
! TCATTCATGAGAAAGAAAAA+GGG + chr2_1:45819702-45819721 None:intergenic 25.0%
! ACTATTTATTGTACTTGTGT+AGG - chr2_1:45819944-45819963 Msa0209040:intron 25.0%
! TAGGAAGAAAATTCAAAAAG+TGG - chr2_1:45820040-45820059 Msa0209040:intron 25.0%
! AAGAAAATTCAAAAAGTGGA+AGG - chr2_1:45820044-45820063 Msa0209040:intron 25.0%
! CTATCTCACTATGTAAAATT+GGG + chr2_1:45820229-45820248 None:intergenic 25.0%
! TCTATCTCACTATGTAAAAT+TGG + chr2_1:45820230-45820249 None:intergenic 25.0%
!! TTGATTAGAAAGTTTAAGAC+TGG - chr2_1:45820275-45820294 Msa0209040:CDS 25.0%
!!! TTTTGGTTTTGGTTTGGAAT+TGG + chr2_1:45812704-45812723 None:intergenic 30.0%
!!! TTTTGGTTTTGGTTTTGGTT+TGG + chr2_1:45812710-45812729 None:intergenic 30.0%
!!! ATTGGTTTTGGTTTTGGTTT+TGG + chr2_1:45812715-45812734 None:intergenic 30.0%
CAGAAAAAGATCTCGTAAAT+TGG - chr2_1:45812822-45812841 Msa0209040:three_prime_UTR 30.0%
TGAAAAACAACAACAACAAG+AGG - chr2_1:45812855-45812874 Msa0209040:three_prime_UTR 30.0%
AAATGTTACCTGAGTCATAT+GGG + chr2_1:45813082-45813101 None:intergenic 30.0%
AAAATGTTACCTGAGTCATA+TGG + chr2_1:45813083-45813102 None:intergenic 30.0%
ATAATTTCTTAGAGCCAGTT+TGG - chr2_1:45813213-45813232 Msa0209040:intron 30.0%
AAAATAAGCCTAATCCAAAC+TGG + chr2_1:45813230-45813249 None:intergenic 30.0%
!! TAAGTTTTATGAGACTGACT+GGG + chr2_1:45813611-45813630 None:intergenic 30.0%
!! ATAAGTTTTATGAGACTGAC+TGG + chr2_1:45813612-45813631 None:intergenic 30.0%
AGTCAGTCTCATAAAACTTA+TGG - chr2_1:45813611-45813630 Msa0209040:intron 30.0%
AGGTTATCATTCACAAACTT+TGG - chr2_1:45814175-45814194 Msa0209040:intron 30.0%
GGTTATCATTCACAAACTTT+GGG - chr2_1:45814176-45814195 Msa0209040:intron 30.0%
! TGAATCCTTTTGTATTCTGA+AGG + chr2_1:45814298-45814317 None:intergenic 30.0%
! ATGCTTTTCGTTCATTGTAA+TGG - chr2_1:45814426-45814445 Msa0209040:CDS 30.0%
ATAAGTTATAAGTCCTCTCT+TGG - chr2_1:45814492-45814511 Msa0209040:CDS 30.0%
! ACATCCTTTTGTAGTTTAGA+AGG - chr2_1:45814533-45814552 Msa0209040:intron 30.0%
! TTAACATTGATAATCCCAAG+AGG - chr2_1:45814609-45814628 Msa0209040:intron 30.0%
!!! GTGGTTTTAAAGTAAGTGAT+GGG - chr2_1:45814644-45814663 Msa0209040:CDS 30.0%
!!! TGGTTTTAAAGTAAGTGATG+GGG - chr2_1:45814645-45814664 Msa0209040:CDS 30.0%
! TGAATTCTGTTGAGTAGTTT+TGG - chr2_1:45814685-45814704 Msa0209040:intron 30.0%
GATTTATTCTCCATCATGTA+TGG - chr2_1:45814756-45814775 Msa0209040:intron 30.0%
GATCCTTAATATACTTCCAA+AGG - chr2_1:45815030-45815049 Msa0209040:intron 30.0%
!! TTGCTGAAGTATTTTTCATG+AGG + chr2_1:45815093-45815112 None:intergenic 30.0%
! GCACTGTTGATGAAAATTAA+TGG - chr2_1:45815200-45815219 Msa0209040:intron 30.0%
ATATTGGTCAAAAAGACTAC+AGG + chr2_1:45815325-45815344 None:intergenic 30.0%
! AGCAGAATAAACTACTCTTT+TGG + chr2_1:45815407-45815426 None:intergenic 30.0%
TGACAAAAAAATAGTGCTTC+AGG - chr2_1:45815539-45815558 Msa0209040:intron 30.0%
CTGGATATATGTACTTGTAA+AGG - chr2_1:45815570-45815589 Msa0209040:intron 30.0%
CTTCTCATTTCTAACAGAAA+AGG - chr2_1:45815792-45815811 Msa0209040:intron 30.0%
! GAAACAAGGATTTGCTTTAA+GGG + chr2_1:45815890-45815909 None:intergenic 30.0%
! TGAAACAAGGATTTGCTTTA+AGG + chr2_1:45815891-45815910 None:intergenic 30.0%
GAGTTGACAAAATTGAAACA+AGG + chr2_1:45815904-45815923 None:intergenic 30.0%
!!! TGCATGCTATTTTTGAAAGT+TGG - chr2_1:45815982-45816001 Msa0209040:intron 30.0%
TCTATGTTGATGTAGATGTT+GGG - chr2_1:45816116-45816135 Msa0209040:intron 30.0%
!!! ACACCATCACTTTTTTTGAT+TGG + chr2_1:45816322-45816341 None:intergenic 30.0%
GAAAACAAAAGCAGAATTCT+CGG - chr2_1:45816420-45816439 Msa0209040:intron 30.0%
AGCTTTGCAAAAGTTGAAAA+AGG + chr2_1:45816453-45816472 None:intergenic 30.0%
! AACTTTTGCAAAGCTGAAAA+AGG - chr2_1:45816458-45816477 Msa0209040:intron 30.0%
! ACTTTTGCAAAGCTGAAAAA+GGG - chr2_1:45816459-45816478 Msa0209040:intron 30.0%
AAAATATAACATACCACAGC+AGG + chr2_1:45816527-45816546 None:intergenic 30.0%
! CTTTAAAAAGGAAGGTTGTA+TGG + chr2_1:45816642-45816661 None:intergenic 30.0%
AATGAAGATACTGAAAGAAG+AGG - chr2_1:45816691-45816710 Msa0209040:CDS 30.0%
ATGAAGATACTGAAAGAAGA+GGG - chr2_1:45816692-45816711 Msa0209040:CDS 30.0%
TTACTGTTGGATATGAAATC+CGG - chr2_1:45816756-45816775 Msa0209040:CDS 30.0%
TATAGGCAAAAAACAGAGAA+GGG + chr2_1:45817275-45817294 None:intergenic 30.0%
ATATAGGCAAAAAACAGAGA+AGG + chr2_1:45817276-45817295 None:intergenic 30.0%
GAATTGGTTGTTATACCTTT+AGG - chr2_1:45817298-45817317 Msa0209040:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr2_1:45817769-45817788 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr2_1:45817839-45817858 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr2_1:45817840-45817859 Msa0209040:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr2_1:45817898-45817917 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr2_1:45817920-45817939 None:intergenic 30.0%
CCACTTTACTTTCAAAAGAT+CGG - chr2_1:45818003-45818022 Msa0209040:intron 30.0%
TAAAGTCTCAAATTGTGTGT+TGG - chr2_1:45818178-45818197 Msa0209040:intron 30.0%
CAATGTGACTATTGTAACTT+CGG + chr2_1:45818204-45818223 None:intergenic 30.0%
CTATCAAAAACCATATTCGA+GGG + chr2_1:45818229-45818248 None:intergenic 30.0%
TCTATCAAAAACCATATTCG+AGG + chr2_1:45818230-45818249 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr2_1:45818236-45818255 Msa0209040:intron 30.0%
ACTCTAACAACTAGGAATAT+GGG + chr2_1:45818334-45818353 None:intergenic 30.0%
AACTCTAACAACTAGGAATA+TGG + chr2_1:45818335-45818354 None:intergenic 30.0%
TCAGATTCTACTCTCTTTAT+AGG - chr2_1:45818732-45818751 Msa0209040:intron 30.0%
CAGATTCTACTCTCTTTATA+GGG - chr2_1:45818733-45818752 Msa0209040:intron 30.0%
AGATTCTACTCTCTTTATAG+GGG - chr2_1:45818734-45818753 Msa0209040:intron 30.0%
! CCTAATTTTATACACTTCCA+AGG + chr2_1:45818881-45818900 None:intergenic 30.0%
! CCTTGGAAGTGTATAAAATT+AGG - chr2_1:45818878-45818897 Msa0209040:CDS 30.0%
! TGGAAGTGTATAAAATTAGG+CGG - chr2_1:45818881-45818900 Msa0209040:CDS 30.0%
!!! CATTTTTTAATTGGCACTTG+AGG + chr2_1:45819075-45819094 None:intergenic 30.0%
TTATCTTACACAGTATCATC+TGG - chr2_1:45819119-45819138 Msa0209040:intron 30.0%
GGCTTATAGGTCATATATAT+TGG - chr2_1:45819198-45819217 Msa0209040:CDS 30.0%
AAAGTTGTACCTGTAAATCA+AGG + chr2_1:45819267-45819286 None:intergenic 30.0%
ACCAACCTGAAATAAATCAA+CGG - chr2_1:45819409-45819428 Msa0209040:intron 30.0%
AAAAATATGAAGAGTCCAAG+AGG + chr2_1:45819435-45819454 None:intergenic 30.0%
TCAAACTTCATAATAGAGTC+AGG - chr2_1:45819468-45819487 Msa0209040:intron 30.0%
CATTCATGAGAAAGAAAAAG+GGG + chr2_1:45819701-45819720 None:intergenic 30.0%
CTCATTCATGAGAAAGAAAA+AGG + chr2_1:45819703-45819722 None:intergenic 30.0%
TCTATGTTCAGACTTATCTT+CGG + chr2_1:45820002-45820021 None:intergenic 30.0%
AAAATTCAAAAAGTGGAAGG+AGG - chr2_1:45820047-45820066 Msa0209040:intron 30.0%
! GTCTGCATATCTTTTCTATA+AGG + chr2_1:45820101-45820120 None:intergenic 30.0%
AAAGATATGCAGACTATAAG+CGG - chr2_1:45820107-45820126 Msa0209040:CDS 30.0%
TACTATCAGAAAGAGATGTA+TGG + chr2_1:45820458-45820477 None:intergenic 30.0%
ACCAAAACCAAAACCAATCA+TGG - chr2_1:45812717-45812736 Msa0209040:three_prime_UTR 35.0%
!!! ACTGTCGTTGATTTGGTTTT+CGG + chr2_1:45812773-45812792 None:intergenic 35.0%
! TCTTGTAACTGTCGTTGATT+TGG + chr2_1:45812780-45812799 None:intergenic 35.0%
GAAGAGAAGAACGATAAAGA+TGG - chr2_1:45812922-45812941 Msa0209040:three_prime_UTR 35.0%
TCATTACTCAGAATTCCAGA+AGG + chr2_1:45812997-45813016 None:intergenic 35.0%
!! AATGAGTCTTTTTCGTCTCT+AGG - chr2_1:45813012-45813031 Msa0209040:three_prime_UTR 35.0%
!! ATGAGTCTTTTTCGTCTCTA+GGG - chr2_1:45813013-45813032 Msa0209040:three_prime_UTR 35.0%
! AATAAGGGCTTGTTTGCATT+AGG + chr2_1:45813431-45813450 None:intergenic 35.0%
!! TGCATTTTTAATTCCAGCTG+TGG - chr2_1:45813917-45813936 Msa0209040:CDS 35.0%
! ATCATTCACAAACTTTGGGA+AGG - chr2_1:45814180-45814199 Msa0209040:intron 35.0%
! TCATTCACAAACTTTGGGAA+GGG - chr2_1:45814181-45814200 Msa0209040:intron 35.0%
!! ATCCTTTTGTATTCTGAAGG+TGG + chr2_1:45814295-45814314 None:intergenic 35.0%
TATAAGTCCTCTCTTGGTAT+CGG - chr2_1:45814498-45814517 Msa0209040:CDS 35.0%
GATAATCCCAAGAGGAATTA+AGG - chr2_1:45814617-45814636 Msa0209040:intron 35.0%
!!! GGTGGTTTTAAAGTAAGTGA+TGG - chr2_1:45814643-45814662 Msa0209040:CDS 35.0%
!!! GGTTTTAAAGTAAGTGATGG+GGG - chr2_1:45814646-45814665 Msa0209040:CDS 35.0%
AAGTTATTCTCTGGTTGTCA+GGG - chr2_1:45814859-45814878 Msa0209040:intron 35.0%
GATATTGGAATCAAACTTCG+AGG - chr2_1:45814994-45815013 Msa0209040:intron 35.0%
!!! TCCAAAGGTATTGGAACTTT+TGG - chr2_1:45815045-45815064 Msa0209040:intron 35.0%
TCCAAAAGTTCCAATACCTT+TGG + chr2_1:45815049-45815068 None:intergenic 35.0%
!! TGAAGTATTTTTCATGAGGC+TGG + chr2_1:45815089-45815108 None:intergenic 35.0%
ATTCATTACATAGAGGGAAG+TGG - chr2_1:45815121-45815140 Msa0209040:intron 35.0%
AGACACTGGAAACTATCATT+CGG + chr2_1:45815177-45815196 None:intergenic 35.0%
! AGTGCTTCAGGTATATTTTC+TGG - chr2_1:45815551-45815570 Msa0209040:intron 35.0%
GTAAAGGTCCCAAATATTTG+TGG - chr2_1:45815586-45815605 Msa0209040:intron 35.0%
GCATACAATCAGGAAAACTA+GGG + chr2_1:45815706-45815725 None:intergenic 35.0%
AGCATACAATCAGGAAAACT+AGG + chr2_1:45815707-45815726 None:intergenic 35.0%
GCTACATTTAGCATACAATC+AGG + chr2_1:45815716-45815735 None:intergenic 35.0%
! CTTACCTAATTTTATGAGCC+TGG - chr2_1:45815758-45815777 Msa0209040:intron 35.0%
TTAGCCAGGCTCATAAAATT+AGG + chr2_1:45815765-45815784 None:intergenic 35.0%
! ACAAACCTTCTTTGTTTGTG+TGG + chr2_1:45815837-45815856 None:intergenic 35.0%
! CACGACAATTTAGAATTGAG+TGG + chr2_1:45815926-45815945 None:intergenic 35.0%
TCCTGTTTAATTACAGGTTG+AGG - chr2_1:45816060-45816079 Msa0209040:intron 35.0%
TCCTCAACCTGTAATTAAAC+AGG + chr2_1:45816064-45816083 None:intergenic 35.0%
ACATCTACATCAACATAGAC+AGG + chr2_1:45816115-45816134 None:intergenic 35.0%
GTCTATGTTGATGTAGATGT+TGG - chr2_1:45816115-45816134 Msa0209040:intron 35.0%
ATACAGAACAACAAAACGCT+TGG + chr2_1:45816282-45816301 None:intergenic 35.0%
TGAACTTAAGAAGATCAGCA+TGG + chr2_1:45816373-45816392 None:intergenic 35.0%
GCTGATCTTCTTAAGTTCAT+TGG - chr2_1:45816374-45816393 Msa0209040:intron 35.0%
!! ACCTTCCTTTTTAAAGAGTG+TGG - chr2_1:45816646-45816665 Msa0209040:CDS 35.0%
! ACCACACTCTTTAAAAAGGA+AGG + chr2_1:45816650-45816669 None:intergenic 35.0%
!! CTTTTTAAAGAGTGTGGTGT+GGG - chr2_1:45816652-45816671 Msa0209040:CDS 35.0%
!! TTTTTAAAGAGTGTGGTGTG+GGG - chr2_1:45816653-45816672 Msa0209040:CDS 35.0%
AAATCCGGTGGTAAATGTTA+GGG - chr2_1:45816771-45816790 Msa0209040:CDS 35.0%
ACTAGATACCCAAATCAGTT+TGG + chr2_1:45816799-45816818 None:intergenic 35.0%
! AAAGGCTTGGATCTGAAATT+TGG - chr2_1:45816852-45816871 Msa0209040:CDS 35.0%
AATTCTGGTACGTCATAACA+CGG + chr2_1:45817029-45817048 None:intergenic 35.0%
AAAACAAAAAACCCTGAGTG+TGG - chr2_1:45817166-45817185 Msa0209040:intron 35.0%
TAAGAGAGATTCACAAATGG+CGG + chr2_1:45817249-45817268 None:intergenic 35.0%
GAGTAAGAGAGATTCACAAA+TGG + chr2_1:45817252-45817271 None:intergenic 35.0%
ATAGGCAAAAAACAGAGAAG+GGG + chr2_1:45817274-45817293 None:intergenic 35.0%
!!! AACTACGGTTTTTTGCTGAA+GGG - chr2_1:45817361-45817380 Msa0209040:intron 35.0%
! AAATAAAACTGAGTTGGGTC+AGG + chr2_1:45817403-45817422 None:intergenic 35.0%
! TGCTTTAGACTCTATGTTTG+TGG - chr2_1:45817428-45817447 Msa0209040:intron 35.0%
! GCTTTAGACTCTATGTTTGT+GGG - chr2_1:45817429-45817448 Msa0209040:intron 35.0%
CTTTAGACTCTATGTTTGTG+GGG - chr2_1:45817430-45817449 Msa0209040:intron 35.0%
AAAACATCAAGTAAGCGTAG+CGG - chr2_1:45817657-45817676 Msa0209040:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr2_1:45817762-45817781 Msa0209040:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr2_1:45817782-45817801 Msa0209040:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr2_1:45817787-45817806 Msa0209040:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr2_1:45817843-45817862 Msa0209040:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr2_1:45817927-45817946 Msa0209040:intron 35.0%
!! CCGATCTTTTGAAAGTAAAG+TGG + chr2_1:45818006-45818025 None:intergenic 35.0%
AAGATGAGGGAGATGTATTA+GGG + chr2_1:45818133-45818152 None:intergenic 35.0%
AAAGATGAGGGAGATGTATT+AGG + chr2_1:45818134-45818153 None:intergenic 35.0%
! GGCTTTTTGCAAAAAGATGA+GGG + chr2_1:45818146-45818165 None:intergenic 35.0%
ACAGAACAACTCTAACAACT+AGG + chr2_1:45818342-45818361 None:intergenic 35.0%
! TTTCTCCTTTTCTGCTTTGT+AGG - chr2_1:45818469-45818488 Msa0209040:intron 35.0%
TATGTTATTCTATGGCTTCC+AGG - chr2_1:45818604-45818623 Msa0209040:intron 35.0%
CAACTCTATGGATATATTCC+TGG + chr2_1:45818625-45818644 None:intergenic 35.0%
CAGGAATATATCCATAGAGT+TGG - chr2_1:45818623-45818642 Msa0209040:intron 35.0%
ATTGCAATTCTTCAGGAATC+AGG + chr2_1:45818694-45818713 None:intergenic 35.0%
CGAAGAAATTGCAATTCTTC+AGG + chr2_1:45818701-45818720 None:intergenic 35.0%
GTTGCAATATAGGTTTCTTG+AGG - chr2_1:45818800-45818819 Msa0209040:intron 35.0%
!!! AGGCAGTATTTTTTATCCCT+TGG - chr2_1:45818861-45818880 Msa0209040:CDS 35.0%
TCAAATGCATACTCTTTCAC+AGG + chr2_1:45819004-45819023 None:intergenic 35.0%
TTCAAATGTACAGTCTCAAC+TGG - chr2_1:45819036-45819055 Msa0209040:intron 35.0%
!! TTTTAATTGGCACTTGAGGA+AGG + chr2_1:45819071-45819090 None:intergenic 35.0%
TGTGTAAGATAAGCTGCAAT+TGG + chr2_1:45819111-45819130 None:intergenic 35.0%
AGTGTTCAAATGATAAACGC+TGG + chr2_1:45819167-45819186 None:intergenic 35.0%
CGTTTATCATTTGAACACTC+TGG - chr2_1:45819168-45819187 Msa0209040:CDS 35.0%
ATATGACCTATAAGCCTCTT+TGG + chr2_1:45819194-45819213 None:intergenic 35.0%
CATGGATATTCATACAGTTC+AGG + chr2_1:45819323-45819342 None:intergenic 35.0%
ATCTGTCTGTTTGAAAGACA+TGG + chr2_1:45819341-45819360 None:intergenic 35.0%
TTTGTACACAACTTCAGACA+AGG + chr2_1:45819380-45819399 None:intergenic 35.0%
TCGAGTAAGAAAGACATGAA+TGG + chr2_1:45819728-45819747 None:intergenic 35.0%
AATTATGCATGGTAGCACTT+AGG + chr2_1:45819791-45819810 None:intergenic 35.0%
TGGGTTTGTAAAACAGAATG+AGG + chr2_1:45819979-45819998 None:intergenic 35.0%
ATCTAACCAATTGGAAATGC+AGG + chr2_1:45820360-45820379 None:intergenic 35.0%
!!! GCCATGATTGGTTTTGGTTT+TGG + chr2_1:45812721-45812740 None:intergenic 40.0%
!!! CTGTCGTTGATTTGGTTTTC+GGG + chr2_1:45812772-45812791 None:intergenic 40.0%
! GTTGAGAATGTTTTGCCTTC+TGG - chr2_1:45812979-45812998 Msa0209040:three_prime_UTR 40.0%
GTTATCTCAACGTACTTCTC+AGG - chr2_1:45813035-45813054 Msa0209040:three_prime_UTR 40.0%
! GAGTTTTACCCATATGACTC+AGG - chr2_1:45813071-45813090 Msa0209040:exon 40.0%
TCTTAGAGCCAGTTTGGATT+AGG - chr2_1:45813219-45813238 Msa0209040:intron 40.0%
! GCGTTTTCGTGTAAGCTATA+AGG - chr2_1:45813633-45813652 Msa0209040:intron 40.0%
! ACGCACTTATGAGGCTTTTT+GGG + chr2_1:45813745-45813764 None:intergenic 40.0%
! TACGCACTTATGAGGCTTTT+TGG + chr2_1:45813746-45813765 None:intergenic 40.0%
AAAAGCCTCATAAGTGCGTA+TGG - chr2_1:45813746-45813765 Msa0209040:intron 40.0%
TACTACCATACGCACTTATG+AGG + chr2_1:45813754-45813773 None:intergenic 40.0%
ACATCCTTTCCCATCAATAG+TGG + chr2_1:45813861-45813880 None:intergenic 40.0%
TTGATGGGAAAGGATGTTCT+TGG - chr2_1:45813864-45813883 Msa0209040:intron 40.0%
TTGTACAACAATTCCACAGC+TGG + chr2_1:45813933-45813952 None:intergenic 40.0%
ATTACACCAGTTCCATTACG+AGG + chr2_1:45813969-45813988 None:intergenic 40.0%
AGCATGTGTGTATACCTGAA+TGG + chr2_1:45814018-45814037 None:intergenic 40.0%
!! TATTGACTTATTCCGCGACT+TGG - chr2_1:45814115-45814134 Msa0209040:CDS 40.0%
GTGTCTTAAAAACCAAGTCG+CGG + chr2_1:45814130-45814149 None:intergenic 40.0%
! CAAACTTTGGGAAGGGTTAT+TGG - chr2_1:45814188-45814207 Msa0209040:intron 40.0%
GACCACCTTCAGAATACAAA+AGG - chr2_1:45814290-45814309 Msa0209040:intron 40.0%
ATTCAAACCGATACCAAGAG+AGG + chr2_1:45814508-45814527 None:intergenic 40.0%
ACCTCACCTTAATTCCTCTT+GGG + chr2_1:45814626-45814645 None:intergenic 40.0%
!! AGAAGCTGTTTCTCTCGATA+AGG - chr2_1:45814716-45814735 Msa0209040:intron 40.0%
!! GAAGCTGTTTCTCTCGATAA+GGG - chr2_1:45814717-45814736 Msa0209040:intron 40.0%
GGAACAGAGAAGTTATTCTC+TGG - chr2_1:45814850-45814869 Msa0209040:intron 40.0%
GAAGTTATTCTCTGGTTGTC+AGG - chr2_1:45814858-45814877 Msa0209040:intron 40.0%
ATCATTGCAACTTCTGGTGT+TGG - chr2_1:45814909-45814928 Msa0209040:intron 40.0%
TCATGATTGATGAAGCAGAC+AGG - chr2_1:45814972-45814991 Msa0209040:intron 40.0%
TGATGAAGCAGACAGGATAT+TGG - chr2_1:45814979-45814998 Msa0209040:intron 40.0%
ATTGGAATCAAACTTCGAGG+AGG - chr2_1:45814997-45815016 Msa0209040:intron 40.0%
ATCAACAGTGCAAAAGACAC+TGG + chr2_1:45815191-45815210 None:intergenic 40.0%
AGGTCATAGCCTAAAAACCT+TGG + chr2_1:45815642-45815661 None:intergenic 40.0%
!! AAGGTTTTTAGGCTATGACC+TGG - chr2_1:45815641-45815660 Msa0209040:intron 40.0%
!! AGGTTTTTAGGCTATGACCT+GGG - chr2_1:45815642-45815661 Msa0209040:intron 40.0%
TGAGAAGCAGATAATTAGCC+AGG + chr2_1:45815779-45815798 None:intergenic 40.0%
TTCAGCCACACAAACAAAGA+AGG - chr2_1:45815829-45815848 Msa0209040:intron 40.0%
!! CAAGGATTTGCTTTAAGGGA+AGG + chr2_1:45815886-45815905 None:intergenic 40.0%
TCTACATCAACATAGACAGG+AGG + chr2_1:45816112-45816131 None:intergenic 40.0%
TGTAGATGTTGGGAGAGAAA+AGG - chr2_1:45816126-45816145 Msa0209040:intron 40.0%
TCAAAGGAGGTGATAGAAGT+AGG + chr2_1:45816161-45816180 None:intergenic 40.0%
ACTGTTGAAGGATTGGAACA+GGG - chr2_1:45816236-45816255 Msa0209040:intron 40.0%
! CCACACCACACTCTTTAAAA+AGG + chr2_1:45816654-45816673 None:intergenic 40.0%
!! CCTTTTTAAAGAGTGTGGTG+TGG - chr2_1:45816651-45816670 Msa0209040:CDS 40.0%
!! TTTTAAAGAGTGTGGTGTGG+GGG - chr2_1:45816654-45816673 Msa0209040:CDS 40.0%
TACTCTATAGCATTGTTGCC+TGG - chr2_1:45816732-45816751 Msa0209040:CDS 40.0%
ACTCTATAGCATTGTTGCCT+GGG - chr2_1:45816733-45816752 Msa0209040:CDS 40.0%
TTCATATCCAACAGTAACCC+AGG + chr2_1:45816753-45816772 None:intergenic 40.0%
GAAATCCGGTGGTAAATGTT+AGG - chr2_1:45816770-45816789 Msa0209040:CDS 40.0%
! TTAGGGTGCCAAACTGATTT+GGG - chr2_1:45816788-45816807 Msa0209040:CDS 40.0%
! GTTGCAACTTTCACTAGTCT+TGG - chr2_1:45816912-45816931 Msa0209040:intron 40.0%
TCTTGGATCAATCAGAACTC+TGG - chr2_1:45816929-45816948 Msa0209040:intron 40.0%
GACATTCGAACAAAACAGTC+AGG + chr2_1:45817137-45817156 None:intergenic 40.0%
AAAAAACCCTGAGTGTGGAA+AGG - chr2_1:45817171-45817190 Msa0209040:intron 40.0%
CAAAAAACCGTAGTTGTGCT+GGG + chr2_1:45817356-45817375 None:intergenic 40.0%
!!! CAACTACGGTTTTTTGCTGA+AGG - chr2_1:45817360-45817379 Msa0209040:intron 40.0%
!!! ACTACGGTTTTTTGCTGAAG+GGG - chr2_1:45817362-45817381 Msa0209040:intron 40.0%
TGAAGGGGAAAAGAAAGCTT+GGG - chr2_1:45817377-45817396 Msa0209040:intron 40.0%
AGACTAGACAGGATAGGATT+AGG - chr2_1:45817710-45817729 Msa0209040:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr2_1:45817830-45817849 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr2_1:45817868-45817887 Msa0209040:intron 40.0%
CTCTAAACCTCCTCTTTACT+CGG + chr2_1:45817967-45817986 None:intergenic 40.0%
GTTTAGAGACCTGCTGAAAA+AGG - chr2_1:45817979-45817998 Msa0209040:intron 40.0%
!!! TAAAGTGGACCTTTTTCAGC+AGG + chr2_1:45817991-45818010 None:intergenic 40.0%
!! GGTGCTGATATGAGTAACAA+GGG + chr2_1:45818112-45818131 None:intergenic 40.0%
! CGGCTTTTTGCAAAAAGATG+AGG + chr2_1:45818147-45818166 None:intergenic 40.0%
! AATTTGAGACTTTACCACCG+TGG + chr2_1:45818172-45818191 None:intergenic 40.0%
TCACATTGAACCCTCGAATA+TGG - chr2_1:45818216-45818235 Msa0209040:intron 40.0%
GCAATTTCTTCGCTACTTGA+AGG - chr2_1:45818709-45818728 Msa0209040:intron 40.0%
GCTTATATTGTAAAGGGGGA+AGG - chr2_1:45818841-45818860 Msa0209040:CDS 40.0%
TGGTTAATTTCAGGCAGCAA+AGG - chr2_1:45818976-45818995 Msa0209040:CDS 40.0%
! CAGTATCATCTGGATTTTGC+AGG - chr2_1:45819129-45819148 Msa0209040:intron 40.0%
GTTGTACCTGTAAATCAAGG+CGG + chr2_1:45819264-45819283 None:intergenic 40.0%
!! GCCGTTGATTTATTTCAGGT+TGG + chr2_1:45819413-45819432 None:intergenic 40.0%
!! AGAGGCCGTTGATTTATTTC+AGG + chr2_1:45819417-45819436 None:intergenic 40.0%
GAAATAAATCAACGGCCTCT+TGG - chr2_1:45819417-45819436 Msa0209040:intron 40.0%
AGGCTTGAGAGAATTATGCA+TGG + chr2_1:45819802-45819821 None:intergenic 40.0%
TCTCTCAAGCCTCTTTATTC+TGG - chr2_1:45819810-45819829 Msa0209040:intron 40.0%
TTCCACAAGCCAGAATAAAG+AGG + chr2_1:45819822-45819841 None:intergenic 40.0%
ATCTACCGCTAAGTCTTCAT+TGG + chr2_1:45819866-45819885 None:intergenic 40.0%
TGTTCAGACTTATCTTCGGT+GGG + chr2_1:45819998-45820017 None:intergenic 40.0%
ATGTTCAGACTTATCTTCGG+TGG + chr2_1:45819999-45820018 None:intergenic 40.0%
!! ACTTATGAAGCATCGTTTGC+AGG - chr2_1:45820132-45820151 Msa0209040:CDS 40.0%
TCTGATCCTGCATTTCCAAT+TGG - chr2_1:45820351-45820370 Msa0209040:CDS 40.0%
ATGTATGGCTGAACTGAGTA+TGG + chr2_1:45820443-45820462 None:intergenic 40.0%
!! TATTTGCTGTTGTAGTTCGC+TGG - chr2_1:45820494-45820513 Msa0209040:five_prime_UTR 40.0%
TGAGAAACAGTGTCTAGCTG+CGG + chr2_1:45812646-45812665 None:intergenic 45.0%
!!! GATTCGGCCATGATTGGTTT+TGG + chr2_1:45812727-45812746 None:intergenic 45.0%
TGAGATGTGGTTGTCGTTGT+CGG + chr2_1:45812749-45812768 None:intergenic 45.0%
!!! TTTGGTTTTCGGGTGAGATG+TGG + chr2_1:45812762-45812781 None:intergenic 45.0%
TCCTTTCCCATCAATAGTGG+CGG + chr2_1:45813858-45813877 None:intergenic 45.0%
GTGCAATTCACACCTCGTAA+TGG - chr2_1:45813954-45813973 Msa0209040:CDS 45.0%
! TTCACACCTCGTAATGGAAC+TGG - chr2_1:45813960-45813979 Msa0209040:CDS 45.0%
TGAATGGCAAGCTCTCTAGT+TGG + chr2_1:45814002-45814021 None:intergenic 45.0%
AACTAGAGAGCTTGCCATTC+AGG - chr2_1:45814001-45814020 Msa0209040:intron 45.0%
!!! GGTTTTTAAGACACACGCTG+TGG - chr2_1:45814136-45814155 Msa0209040:CDS 45.0%
! ACTTTGGGAAGGGTTATTGG+TGG - chr2_1:45814191-45814210 Msa0209040:intron 45.0%
!! TATTGGTGGTGTGGGTAGAA+AGG - chr2_1:45814205-45814224 Msa0209040:intron 45.0%
!! ATTGGTGGTGTGGGTAGAAA+GGG - chr2_1:45814206-45814225 Msa0209040:intron 45.0%
GAAGCTGAGCGCATTGTTAA+AGG - chr2_1:45814230-45814249 Msa0209040:intron 45.0%
! AATCTGTTGATTGCAACGCC+TGG - chr2_1:45814257-45814276 Msa0209040:intron 45.0%
!! TAAAAAGCACCGACACTGAC+AGG - chr2_1:45814370-45814389 Msa0209040:intron 45.0%
TCCCAAGAGGAATTAAGGTG+AGG - chr2_1:45814622-45814641 Msa0209040:intron 45.0%
CACCTCACCTTAATTCCTCT+TGG + chr2_1:45814627-45814646 None:intergenic 45.0%
CAAGAGGAATTAAGGTGAGG+TGG - chr2_1:45814625-45814644 Msa0209040:intron 45.0%
! TAAGTGATGGGGGATATGAG+AGG - chr2_1:45814656-45814675 Msa0209040:intron 45.0%
GATGCAAGCTCCATACATGA+TGG + chr2_1:45814769-45814788 None:intergenic 45.0%
GACACTGTCGAATCATGCAA+GGG + chr2_1:45814952-45814971 None:intergenic 45.0%
AGACACTGTCGAATCATGCA+AGG + chr2_1:45814953-45814972 None:intergenic 45.0%
! CGTTTAAAGGTATGGTGCCA+AGG - chr2_1:45815622-45815641 Msa0209040:intron 45.0%
!! GGTATGGTGCCAAGGTTTTT+AGG - chr2_1:45815630-45815649 Msa0209040:intron 45.0%
AGGTGTCTGAAAAGACAAGC+GGG + chr2_1:45816092-45816111 None:intergenic 45.0%
! GAGGTGTCTGAAAAGACAAG+CGG + chr2_1:45816093-45816112 None:intergenic 45.0%
AGGAGGTGATAGAAGTAGGT+AGG + chr2_1:45816157-45816176 None:intergenic 45.0%
CACTGTTGAAGGATTGGAAC+AGG - chr2_1:45816235-45816254 Msa0209040:intron 45.0%
ACAACAAAACGCTTGGCACA+GGG + chr2_1:45816275-45816294 None:intergenic 45.0%
AACAACAAAACGCTTGGCAC+AGG + chr2_1:45816276-45816295 None:intergenic 45.0%
ATTGTTGCCTGGGTTACTGT+TGG - chr2_1:45816743-45816762 Msa0209040:CDS 45.0%
CTGTTGGATATGAAATCCGG+TGG - chr2_1:45816759-45816778 Msa0209040:CDS 45.0%
! GTTAGGGTGCCAAACTGATT+TGG - chr2_1:45816787-45816806 Msa0209040:CDS 45.0%
TACGTCATAACACGGACCAA+GGG + chr2_1:45817021-45817040 None:intergenic 45.0%
ACTCACGATTTCACCCACAA+CGG + chr2_1:45817063-45817082 None:intergenic 45.0%
CCTCAACTGAACTCTCCTAA+AGG + chr2_1:45817316-45817335 None:intergenic 45.0%
! CCTTTAGGAGAGTTCAGTTG+AGG - chr2_1:45817313-45817332 Msa0209040:CDS 45.0%
TTAGGAGAGTTCAGTTGAGG+TGG - chr2_1:45817316-45817335 Msa0209040:CDS 45.0%
GCAAAAAACCGTAGTTGTGC+TGG + chr2_1:45817357-45817376 None:intergenic 45.0%
CTGAAGGGGAAAAGAAAGCT+TGG - chr2_1:45817376-45817395 Msa0209040:intron 45.0%
AGACTCTATGTTTGTGGGGA+TGG - chr2_1:45817434-45817453 Msa0209040:intron 45.0%
GACTCTATGTTTGTGGGGAT+GGG - chr2_1:45817435-45817454 Msa0209040:intron 45.0%
ACTCTATGTTTGTGGGGATG+GGG - chr2_1:45817436-45817455 Msa0209040:intron 45.0%
GATGGGGGAATAGAGTTGTA+TGG - chr2_1:45817452-45817471 Msa0209040:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG - chr2_1:45817699-45817718 Msa0209040:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG - chr2_1:45817704-45817723 Msa0209040:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr2_1:45817735-45817754 Msa0209040:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr2_1:45817736-45817755 Msa0209040:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr2_1:45817737-45817756 Msa0209040:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr2_1:45817829-45817848 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr2_1:45817852-45817871 Msa0209040:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr2_1:45817862-45817881 Msa0209040:intron 45.0%
!! GGGTGCTGATATGAGTAACA+AGG + chr2_1:45818113-45818132 None:intergenic 45.0%
! TTTTGCAAAAAGCCGCTCCA+CGG - chr2_1:45818152-45818171 Msa0209040:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_1:45818285-45818304 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr2_1:45818286-45818305 None:intergenic 45.0%
CCAGTCCTACAAAGCAGAAA+AGG + chr2_1:45818477-45818496 None:intergenic 45.0%
! CCTTTTCTGCTTTGTAGGAC+TGG - chr2_1:45818474-45818493 Msa0209040:intron 45.0%
TGATCCACCTGATGAACCAA+AGG - chr2_1:45818508-45818527 Msa0209040:intron 45.0%
!! AGAAGCACCTTTGGTTCATC+AGG + chr2_1:45818518-45818537 None:intergenic 45.0%
GAGCTGTTCTACCAACTCTA+TGG + chr2_1:45818637-45818656 None:intergenic 45.0%
TAATTGGCACTTGAGGAAGG+AGG + chr2_1:45819068-45819087 None:intergenic 45.0%
! CTGGATTTTGCAGGAGAAGA+TGG - chr2_1:45819138-45819157 Msa0209040:CDS 45.0%
! GATTTTGCAGGAGAAGATGG+TGG - chr2_1:45819141-45819160 Msa0209040:CDS 45.0%
TTTGAACACTCTGGCCAAAG+AGG - chr2_1:45819177-45819196 Msa0209040:CDS 45.0%
TGTTCACCGCCTTGATTTAC+AGG - chr2_1:45819255-45819274 Msa0209040:CDS 45.0%
AAAGGGGAGAAGAGTAGAGT+GGG + chr2_1:45819685-45819704 None:intergenic 45.0%
AAAAGGGGAGAAGAGTAGAG+TGG + chr2_1:45819686-45819705 None:intergenic 45.0%
TGCATGGTAGCACTTAGGAA+AGG + chr2_1:45819786-45819805 None:intergenic 45.0%
!! AGCCTCTTTATTCTGGCTTG+TGG - chr2_1:45819817-45819836 Msa0209040:intron 45.0%
!! GTCTTCATTGGTGGTGTAGT+AGG + chr2_1:45819854-45819873 None:intergenic 45.0%
CACCACCAATGAAGACTTAG+CGG - chr2_1:45819858-45819877 Msa0209040:intron 45.0%
TACCGCTAAGTCTTCATTGG+TGG + chr2_1:45819863-45819882 None:intergenic 45.0%
ATAGCAGTGCTTCGAAGCAT+AGG - chr2_1:45820021-45820040 Msa0209040:intron 45.0%
GGAGGAAGAAGACATTGATC+AGG - chr2_1:45820065-45820084 Msa0209040:CDS 45.0%
GGATTCCTGCCAAAACTTTG+GGG + chr2_1:45820208-45820227 None:intergenic 45.0%
GGGATTCCTGCCAAAACTTT+GGG + chr2_1:45820209-45820228 None:intergenic 45.0%
TGGGATTCCTGCCAAAACTT+TGG + chr2_1:45820210-45820229 None:intergenic 45.0%
!! AATTGAAAATATTATTATAT+TGG - chr2_1:45818906-45818925 Msa0209040:CDS 5.0%
AGAAACAGTGTCTAGCTGCG+GGG + chr2_1:45812644-45812663 None:intergenic 50.0%
GAGAAACAGTGTCTAGCTGC+GGG + chr2_1:45812645-45812664 None:intergenic 50.0%
! TGAAGCTGCTGGTTGTTCTG+TGG + chr2_1:45812673-45812692 None:intergenic 50.0%
TGGTGAAGCAATGAAGCTGC+TGG + chr2_1:45812684-45812703 None:intergenic 50.0%
TTGTCGGATTCGGCCATGAT+TGG + chr2_1:45812733-45812752 None:intergenic 50.0%
GTGGTTGTCGTTGTCGGATT+CGG + chr2_1:45812743-45812762 None:intergenic 50.0%
AGCGATTCCGCCACTATTGA+TGG - chr2_1:45813848-45813867 Msa0209040:intron 50.0%
GCGATTCCGCCACTATTGAT+GGG - chr2_1:45813849-45813868 Msa0209040:intron 50.0%
TCCGCCACTATTGATGGGAA+AGG - chr2_1:45813854-45813873 Msa0209040:intron 50.0%
GTGGCGAGTGAGCTAATGAA+AGG - chr2_1:45814155-45814174 Msa0209040:intron 50.0%
!! GGAAGGGTTATTGGTGGTGT+GGG - chr2_1:45814197-45814216 Msa0209040:intron 50.0%
GTCACTTGTCCTGTCAGTGT+CGG + chr2_1:45814382-45814401 None:intergenic 50.0%
CAAGTTAGCAACATCGTCCC+AGG + chr2_1:45815662-45815681 None:intergenic 50.0%
! AATACGTTCCGCATCGATGC+AGG - chr2_1:45816211-45816230 Msa0209040:intron 50.0%
! AACAGTGACCTGCATCGATG+CGG + chr2_1:45816222-45816241 None:intergenic 50.0%
TCGATGCAGGTCACTGTTGA+AGG - chr2_1:45816224-45816243 Msa0209040:intron 50.0%
GCAGGTCACTGTTGAAGGAT+TGG - chr2_1:45816229-45816248 Msa0209040:intron 50.0%
! TGTACTGATGTTGCTGCTCG+TGG - chr2_1:45816491-45816510 Msa0209040:intron 50.0%
TGGACTTGACATACCTGCTG+TGG - chr2_1:45816511-45816530 Msa0209040:intron 50.0%
GGCACCCTAACATTTACCAC+CGG + chr2_1:45816778-45816797 None:intergenic 50.0%
TACAATCCCTATGCCTCCCA+AGG - chr2_1:45816995-45817014 Msa0209040:intron 50.0%
GTACGTCATAACACGGACCA+AGG + chr2_1:45817022-45817041 None:intergenic 50.0%
ACGGCACACTTCAGCAATTC+TGG + chr2_1:45817044-45817063 None:intergenic 50.0%
! ATTGCTGAAGTGTGCCGTTG+TGG - chr2_1:45817046-45817065 Msa0209040:CDS 50.0%
! TTGCTGAAGTGTGCCGTTGT+GGG - chr2_1:45817047-45817066 Msa0209040:CDS 50.0%
TGGGTGAAATCGTGAGTTGC+CGG - chr2_1:45817066-45817085 Msa0209040:intron 50.0%
TGAAATCGTGAGTTGCCGGT+GGG - chr2_1:45817070-45817089 Msa0209040:intron 50.0%
!! TGGGTGGAAAGGTGTCGAAA+TGG - chr2_1:45817099-45817118 Msa0209040:intron 50.0%
TCACAAATGGCGGTGCAAAG+AGG + chr2_1:45817239-45817258 None:intergenic 50.0%
CTCTATGTTTGTGGGGATGG+GGG - chr2_1:45817437-45817456 Msa0209040:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+CGG - chr2_1:45817665-45817684 Msa0209040:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr2_1:45817738-45817757 Msa0209040:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr2_1:45817743-45817762 None:intergenic 50.0%
AACCTCCTCTTTACTCGGCT+CGG + chr2_1:45817962-45817981 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_1:45818281-45818300 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr2_1:45818287-45818306 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr2_1:45818284-45818303 Msa0209040:intron 50.0%
! AGCACCTTTGGTTCATCAGG+TGG + chr2_1:45818515-45818534 None:intergenic 50.0%
!! AGAGTTGGTAGAACAGCTCG+TGG - chr2_1:45818638-45818657 Msa0209040:intron 50.0%
!! GAGTTGGTAGAACAGCTCGT+GGG - chr2_1:45818639-45818658 Msa0209040:intron 50.0%
!! AGTTGGTAGAACAGCTCGTG+GGG - chr2_1:45818640-45818659 Msa0209040:intron 50.0%
CTCTGGCCAAAGAGGCTTAT+AGG - chr2_1:45819185-45819204 Msa0209040:CDS 50.0%
AGAGTGGGATGGGTAACAGA+GGG + chr2_1:45819670-45819689 None:intergenic 50.0%
TAGAGTGGGATGGGTAACAG+AGG + chr2_1:45819671-45819690 None:intergenic 50.0%
GGAGAAGAGTAGAGTGGGAT+GGG + chr2_1:45819680-45819699 None:intergenic 50.0%
AGCATCGTTTGCAGGAGACA+TGG - chr2_1:45820140-45820159 Msa0209040:CDS 50.0%
!! TCCTGCCAAAACTTTGGGGT+GGG + chr2_1:45820204-45820223 None:intergenic 50.0%
! TTCCTGCCAAAACTTTGGGG+TGG + chr2_1:45820205-45820224 None:intergenic 50.0%
! TTGCTGTTGTAGTTCGCTGG+TGG - chr2_1:45820497-45820516 Msa0209040:five_prime_UTR 50.0%
!! AGGATGTTCTTGGTGCTGCG+AGG - chr2_1:45813874-45813893 Msa0209040:intron 55.0%
!! TGTTCTTGGTGCTGCGAGGA+CGG - chr2_1:45813878-45813897 Msa0209040:intron 55.0%
!! GGGAAGGGTTATTGGTGGTG+TGG - chr2_1:45814196-45814215 Msa0209040:intron 55.0%
AGGTGGTCAAGAAGACGACC+AGG + chr2_1:45814278-45814297 None:intergenic 55.0%
GTTTGTGTGAGCTGCGTCGT+AGG - chr2_1:45816968-45816987 Msa0209040:intron 55.0%
TAACACGGACCAAGGGCCTT+GGG + chr2_1:45817014-45817033 None:intergenic 55.0%
ATAACACGGACCAAGGGCCT+TGG + chr2_1:45817015-45817034 None:intergenic 55.0%
GTGAAATCGTGAGTTGCCGG+TGG - chr2_1:45817069-45817088 Msa0209040:intron 55.0%
CGTAGTTGTGCTGGGTGAGA+GGG + chr2_1:45817348-45817367 None:intergenic 55.0%
CCTCTCACCCAGCACAACTA+CGG - chr2_1:45817346-45817365 Msa0209040:intron 55.0%
CGGATGTTGCGTTGGATGAG+TGG - chr2_1:45817685-45817704 Msa0209040:intron 55.0%
!! TCTTTACTCGGCTCGGGTTC+GGG + chr2_1:45817955-45817974 None:intergenic 55.0%
!! CTCTTTACTCGGCTCGGGTT+CGG + chr2_1:45817956-45817975 None:intergenic 55.0%
ACCTCCTCTTTACTCGGCTC+GGG + chr2_1:45817961-45817980 None:intergenic 55.0%
GAGACTTTACCACCGTGGAG+CGG + chr2_1:45818167-45818186 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr2_1:45818273-45818292 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_1:45818272-45818291 Msa0209040:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_1:45818273-45818292 Msa0209040:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_1:45818279-45818298 Msa0209040:intron 55.0%
GGGAGAAGAGTAGAGTGGGA+TGG + chr2_1:45819681-45819700 None:intergenic 55.0%
!! CTGCCAAAACTTTGGGGTGG+GGG + chr2_1:45820202-45820221 None:intergenic 55.0%
!! CCTGCCAAAACTTTGGGGTG+GGG + chr2_1:45820203-45820222 None:intergenic 55.0%
!! GTTCTTGGTGCTGCGAGGAC+GGG - chr2_1:45813879-45813898 Msa0209040:intron 60.0%
! CAAGGGCCTTGGGAGGCATA+GGG + chr2_1:45817004-45817023 None:intergenic 60.0%
AGTTGCCGGTGGGAACGTGT+GGG - chr2_1:45817080-45817099 Msa0209040:intron 60.0%
TTCCACCCACACGTTCCCAC+CGG + chr2_1:45817088-45817107 None:intergenic 60.0%
GTGGGAACGTGTGGGTGGAA+AGG - chr2_1:45817088-45817107 Msa0209040:intron 60.0%
GTGGCGCCTTTCCACACTCA+GGG + chr2_1:45817180-45817199 None:intergenic 60.0%
CAAGGAGGAGTTGTGGTCGC+AGG + chr2_1:45817205-45817224 None:intergenic 60.0%
AAAGAGGAGCTGCGAGCGCA+AGG + chr2_1:45817223-45817242 None:intergenic 60.0%
TGTGCTGGGTGAGAGGGATG+TGG + chr2_1:45817342-45817361 None:intergenic 60.0%
CCGTAGTTGTGCTGGGTGAG+AGG + chr2_1:45817349-45817368 None:intergenic 60.0%
CGGAGATGCGGATGTTGCGT+TGG - chr2_1:45817677-45817696 Msa0209040:intron 60.0%
CGAACCCGAGCCGAGTAAAG+AGG - chr2_1:45817954-45817973 Msa0209040:intron 60.0%
ACCCGAGCCGAGTAAAGAGG+AGG - chr2_1:45817957-45817976 Msa0209040:intron 60.0%
TGCAAAAAGCCGCTCCACGG+TGG - chr2_1:45818155-45818174 Msa0209040:CDS 60.0%
GGTAGAACAGCTCGTGGGGA+AGG - chr2_1:45818644-45818663 Msa0209040:intron 60.0%
AGAACAGCTCGTGGGGAAGG+TGG - chr2_1:45818647-45818666 Msa0209040:intron 60.0%
GCTCGTGGGGAAGGTGGAAA+AGG - chr2_1:45818653-45818672 Msa0209040:intron 60.0%
! ACGCCCCCACCCCAAAGTTT+TGG - chr2_1:45820196-45820215 Msa0209040:CDS 60.0%
!! CCCCACCCCAAAGTTTTGGC+AGG - chr2_1:45820200-45820219 Msa0209040:CDS 60.0%
! CCAAGGGCCTTGGGAGGCAT+AGG + chr2_1:45817005-45817024 None:intergenic 65.0%
CCTATGCCTCCCAAGGCCCT+TGG - chr2_1:45817002-45817021 Msa0209040:intron 65.0%
GAGTTGCCGGTGGGAACGTG+TGG - chr2_1:45817079-45817098 Msa0209040:intron 65.0%
GGTGGCGCCTTTCCACACTC+AGG + chr2_1:45817181-45817200 None:intergenic 65.0%
GGAGGAGTTGTGGTCGCAGG+CGG + chr2_1:45817202-45817221 None:intergenic 65.0%
GCGAGCGCAAGGAGGAGTTG+TGG + chr2_1:45817212-45817231 None:intergenic 65.0%
!! ACTTTGGGGTGGGGGCGTGT+GGG + chr2_1:45820194-45820213 None:intergenic 65.0%
!! AACTTTGGGGTGGGGGCGTG+TGG + chr2_1:45820195-45820214 None:intergenic 65.0%
! GGTGCTGCGAGGACGGGTTC+TGG - chr2_1:45813885-45813904 Msa0209040:CDS 70.0%
CACGGACCAAGGGCCTTGGG+AGG + chr2_1:45817011-45817030 None:intergenic 70.0%
TGCCGGTGGGAACGTGTGGG+TGG - chr2_1:45817083-45817102 Msa0209040:intron 70.0%
GGAGTTGTGGTCGCAGGCGG+TGG + chr2_1:45817199-45817218 None:intergenic 70.0%
GAGGAGCTGCGAGCGCAAGG+AGG + chr2_1:45817220-45817239 None:intergenic 70.0%
GGGCGTGTGGGGGTTGTAGG+TGG + chr2_1:45820182-45820201 None:intergenic 70.0%
! TGGGGGCGTGTGGGGGTTGT+AGG + chr2_1:45820185-45820204 None:intergenic 70.0%
! TTTGGGGTGGGGGCGTGTGG+GGG + chr2_1:45820192-45820211 None:intergenic 70.0%
!! CTTTGGGGTGGGGGCGTGTG+GGG + chr2_1:45820193-45820212 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 45812617 45820539 45812617 ID=Msa0209040;Name=Msa0209040
chr2_1 mRNA 45812617 45820539 45812617 ID=Msa0209040-mRNA-1;Parent=Msa0209040;Name=Msa0209040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=119|0.90|0.91|1|1|1|12|457|548
chr2_1 exon 45812617 45813190 45812617 ID=Msa0209040-mRNA-1:exon:13209;Parent=Msa0209040-mRNA-1
chr2_1 exon 45813880 45814005 45813880 ID=Msa0209040-mRNA-1:exon:13208;Parent=Msa0209040-mRNA-1
chr2_1 exon 45814099 45814167 45814099 ID=Msa0209040-mRNA-1:exon:13207;Parent=Msa0209040-mRNA-1
chr2_1 exon 45814426 45814530 45814426 ID=Msa0209040-mRNA-1:exon:13206;Parent=Msa0209040-mRNA-1
chr2_1 exon 45814627 45814665 45814627 ID=Msa0209040-mRNA-1:exon:13205;Parent=Msa0209040-mRNA-1
chr2_1 exon 45816624 45816923 45816624 ID=Msa0209040-mRNA-1:exon:13204;Parent=Msa0209040-mRNA-1
chr2_1 exon 45817009 45817080 45817009 ID=Msa0209040-mRNA-1:exon:13203;Parent=Msa0209040-mRNA-1
chr2_1 exon 45817306 45817347 45817306 ID=Msa0209040-mRNA-1:exon:13202;Parent=Msa0209040-mRNA-1
chr2_1 exon 45818105 45818188 45818105 ID=Msa0209040-mRNA-1:exon:13201;Parent=Msa0209040-mRNA-1
chr2_1 exon 45818822 45819010 45818822 ID=Msa0209040-mRNA-1:exon:13200;Parent=Msa0209040-mRNA-1
chr2_1 exon 45819134 45819280 45819134 ID=Msa0209040-mRNA-1:exon:13199;Parent=Msa0209040-mRNA-1
chr2_1 exon 45820064 45820539 45820064 ID=Msa0209040-mRNA-1:exon:13198;Parent=Msa0209040-mRNA-1
chr2_1 five_prime_UTR 45820421 45820539 45820421 ID=Msa0209040-mRNA-1:five_prime_utr;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45820064 45820420 45820064 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45819134 45819280 45819134 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45818822 45819010 45818822 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45818105 45818188 45818105 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45817306 45817347 45817306 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45817009 45817080 45817009 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45816624 45816923 45816624 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45814627 45814665 45814627 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45814426 45814530 45814426 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45814099 45814167 45814099 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45813880 45814005 45813880 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 CDS 45813074 45813190 45813074 ID=Msa0209040-mRNA-1:cds;Parent=Msa0209040-mRNA-1
chr2_1 three_prime_UTR 45812617 45813073 45812617 ID=Msa0209040-mRNA-1:three_prime_utr;Parent=Msa0209040-mRNA-1
Gene Sequence

>Msa0209040

ATGGCCGAATCCGACAACGACAACCACATCTCACCCGAAAACCAAATCAACGACAGTTACAAGAAGAAGAATAAGAAGCTTCGCAACAGAAAAAGATCTCGTAAATTGGAAAAAGAACTTGAAAAACAACAACAACAAGAGGAGAAGAATAATGAAAACACAGATTCTGAAGCTGAAGAAGATGAAGAAGAGAAGAACGATAAAGATGGCGACGACGACGTCGAAGAAATAGAAGAGAAGAAAGTTGAGAATGTTTTGCCTTCTGGAATTCTGAGTAATGAGTCTTTTTCGTCTCTAGGGTTATCTCAACGTACTTCTCAGGCTATTGCTGCAATGAGTTTTACCCATATGACTCAGGATGTTCTTGGTGCTGCGAGGACGGGTTCTGGTAAAACACTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTGCAATTCACACCTCGTAATGGAACTGGTGTAATTGTCATTTGTCCAACTAGAGAGCTTGCCATTCAGACACACGCTGTGGCGAGTGAGCTAATGAAAGGTTATCATTCACAAACTTTGGGAAGGGTTATTGGTGGTGTGGGTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGAGTAAATCTGTTGATTGCAACGCCTGGTCGTCTTCTTGACCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAATCAAACTTCGAGGAGGAAATGAAGCAGATCCTTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATGTTGGGAGAGAAAAGGTCACTGTTGAAGGATTGGAACAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTGTATTCATTCTTGAAGAGATACCAATCAAAAAAAGTGATGGTGTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCTGATCTTCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGAATTCTCGGACAAGTACCTTTTTCAACTTTTGCAAAGCTGAAAAAGGGATATTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTTTGATCCACCTGATGAACCAAAGGAATATATCCATAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTACTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAAAAGCTTTCAAATGTACAGTCTCAACTGGAGAAGATGGTGGCCAGCGTTTATCATTTGAACACTCTGGCCAAAGAGGCTTATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACCTCATTCTGTTTTACAAACCCACCGAAGATAAGTCTGAACATAGATAGCAGTGCTTCGAAGCATAGGAAGAAAATTCAAAAAGTGGAAGGAGGAAGAAGACATTGA
Protein sequence

>Msa0209040

MAESDNDNHISPENQINDSYKKKNKKLRNRKRSRKLEKELEKQQQQEEKNNENTDSEAEEDEEEKNDKDGDDDVEEIEEKKVENVLPSGILSNESFSSLGLSQRTSQAIAAMSFTHMTQDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGTGVIVICPTRELAIQTHAVASELMKGYHSQTLGRVIGGVGRKGEAERIVKGVNLLIATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILESNFEEEMKQILNILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDVGREKVTVEGLEQGYVVVPCAKRFVVLYSFLKRYQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQNSRTSTFFNFCKAEKGILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAFDDKKLSNVQSQLEKMVASVYHLNTLAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFCFTNPPKISLNIDSSASKHRKKIQKVEGGRRH*