Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209150 | XP_003595632.2 | 97.026 | 269 | 8 | 0 | 4 | 272 | 3 | 271 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209150 | sp|Q1G3U6|PCO3_ARATH | 57.818 | 275 | 105 | 6 | 3 | 272 | 14 | 282 | 5.59e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209150 | G7IQJ9 | 97.026 | 269 | 8 | 0 | 4 | 272 | 3 | 271 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0209150 | Msa0220750 | -0.801940 | 7.101857e-49 | -8.615850e-47 |
| Msa0209150 | Msa0326700 | 0.991024 | 1.666017e-185 | -8.615850e-47 |
| Msa0209150 | Msa0745250 | 0.834350 | 3.153748e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209150 | MtrunA17_Chr2g0307681 | 97.026 | 269 | 8 | 0 | 4 | 272 | 3 | 271 | 0.0 | 549 |
| Msa0209150 | MtrunA17_Chr6g0460971 | 46.559 | 247 | 117 | 6 | 26 | 270 | 55 | 288 | 1.78e-72 | 224 |
| Msa0209150 | MtrunA17_Chr7g0253891 | 42.701 | 274 | 136 | 9 | 1 | 270 | 22 | 278 | 4.39e-70 | 217 |
| Msa0209150 | MtrunA17_Chr6g0452941 | 46.000 | 250 | 113 | 7 | 29 | 270 | 41 | 276 | 6.30e-68 | 212 |
| Msa0209150 | MtrunA17_Chr7g0216881 | 43.902 | 246 | 119 | 6 | 25 | 266 | 41 | 271 | 5.15e-63 | 199 |
| Msa0209150 | MtrunA17_Chr2g0320221 | 43.673 | 245 | 124 | 6 | 29 | 271 | 5 | 237 | 5.23e-61 | 192 |
| Msa0209150 | MtrunA17_Chr2g0283961 | 41.509 | 265 | 106 | 10 | 29 | 271 | 4 | 241 | 9.18e-60 | 189 |
| Msa0209150 | MtrunA17_Chr4g0041281 | 40.873 | 252 | 122 | 7 | 29 | 271 | 5 | 238 | 6.45e-58 | 185 |
| Msa0209150 | MtrunA17_Chr5g0426531 | 40.964 | 249 | 124 | 5 | 25 | 270 | 2 | 230 | 3.54e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209150 | AT1G18490.1 | 57.818 | 275 | 105 | 6 | 3 | 272 | 14 | 282 | 5.69e-115 | 332 |
| Msa0209150 | AT5G39890.1 | 44.715 | 246 | 116 | 6 | 29 | 271 | 47 | 275 | 1.81e-68 | 213 |
| Msa0209150 | AT5G15120.1 | 43.083 | 253 | 120 | 7 | 27 | 271 | 56 | 292 | 1.80e-62 | 199 |
| Msa0209150 | AT5G39890.2 | 46.860 | 207 | 92 | 5 | 29 | 234 | 47 | 236 | 1.73e-59 | 189 |
| Msa0209150 | AT3G58670.2 | 40.891 | 247 | 132 | 7 | 29 | 271 | 5 | 241 | 8.22e-56 | 180 |
| Msa0209150 | AT3G58670.3 | 40.891 | 247 | 132 | 7 | 29 | 271 | 5 | 241 | 8.22e-56 | 180 |
| Msa0209150 | AT3G58670.1 | 40.891 | 247 | 132 | 7 | 29 | 271 | 5 | 241 | 8.22e-56 | 180 |
| Msa0209150 | AT2G42670.1 | 42.276 | 246 | 129 | 9 | 29 | 271 | 5 | 240 | 2.89e-55 | 178 |
| Msa0209150 | AT2G42670.2 | 41.870 | 246 | 131 | 9 | 29 | 271 | 5 | 241 | 9.16e-55 | 177 |
| Msa0209150 | AT3G58670.4 | 44.571 | 175 | 91 | 4 | 99 | 271 | 28 | 198 | 2.38e-46 | 154 |
| Msa0209150 | AT2G42670.3 | 45.963 | 161 | 79 | 6 | 114 | 271 | 18 | 173 | 6.20e-41 | 139 |
Find 66 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATAAATGTTGCAATTT+TGG | 0.041536 | 2_1:+46021470 | None:intergenic |
| AATCTTGAACCTTAGAGTTT+TGG | 0.272644 | 2_1:+46021369 | None:intergenic |
| CACAAACTTTCTTCAATTCT+CGG | 0.282207 | 2_1:-46021281 | Msa0209150:intron |
| TACTTACAGAATGTTGAATA+AGG | 0.328210 | 2_1:+46017871 | None:intergenic |
| CTTCCTTCATATTCTTTGTA+AGG | 0.334390 | 2_1:+46017919 | None:intergenic |
| TCCTTTAGCCCAACATCAAC+TGG | 0.353434 | 2_1:+46019637 | None:intergenic |
| TGAATGTCCACATATGTTAT+CGG | 0.366942 | 2_1:+46019538 | None:intergenic |
| TTGCTAAATACGGTCATTCC+AGG | 0.370103 | 2_1:+46018963 | None:intergenic |
| TCCCTTGCTTTCTACGATGC+AGG | 0.372402 | 2_1:+46018890 | None:intergenic |
| TTGTGCAAAGCTTGAGAAGA+AGG | 0.375222 | 2_1:+46021299 | None:intergenic |
| AGAATGGATGGTATTATTGT+TGG | 0.377269 | 2_1:-46016495 | Msa0209150:three_prime_UTR |
| GGATCTGCAGCAGCAGGAAA+TGG | 0.399793 | 2_1:-46016673 | Msa0209150:intron |
| TATGAAGCACCAAAACTCTA+AGG | 0.412766 | 2_1:-46021378 | Msa0209150:CDS |
| ACCAGTTGATGTTGGGCTAA+AGG | 0.414927 | 2_1:-46019638 | Msa0209150:CDS |
| TGAATATTTCCACCACGGTT+TGG | 0.415229 | 2_1:+46017991 | None:intergenic |
| CTATTCATATAAAGATTACT+AGG | 0.415622 | 2_1:+46016598 | None:intergenic |
| GGCAAAGTTAGCAGTTGATA+AGG | 0.419732 | 2_1:-46018049 | Msa0209150:CDS |
| GCAGACGATGATCGAGGGCT+TGG | 0.422778 | 2_1:-46019607 | Msa0209150:CDS |
| CCCTTGCTTTCTACGATGCA+GGG | 0.439792 | 2_1:+46018891 | None:intergenic |
| CTATTAAACCAGTTGATGTT+GGG | 0.439890 | 2_1:-46019645 | Msa0209150:CDS |
| TACATGTGAAAGCTTATGAC+TGG | 0.450198 | 2_1:-46018923 | Msa0209150:CDS |
| TTTCATTGTTGCAGTAAGAC+TGG | 0.467606 | 2_1:-46018070 | Msa0209150:intron |
| GTGGAATAACTGAAGAAGTT+GGG | 0.468762 | 2_1:+46018997 | None:intergenic |
| AGTAATCTTTATATGAATAG+TGG | 0.490002 | 2_1:-46016595 | Msa0209150:CDS |
| GTACAGAAGTTTGCTAAATA+CGG | 0.494996 | 2_1:+46018953 | None:intergenic |
| ACTATTAAACCAGTTGATGT+TGG | 0.498236 | 2_1:-46019646 | Msa0209150:CDS |
| CCTTCATATTCTTTGTAAGG+AGG | 0.504841 | 2_1:+46017922 | None:intergenic |
| AGTGGAATAACTGAAGAAGT+TGG | 0.509668 | 2_1:+46018996 | None:intergenic |
| CAGAGCTAAAGCTTTAAAGC+TGG | 0.510020 | 2_1:+46016559 | None:intergenic |
| TTCTTGTGTAAAAGAATGGA+TGG | 0.512955 | 2_1:-46016507 | Msa0209150:three_prime_UTR |
| CGGTCATTCCAGGATGGTCG+TGG | 0.518160 | 2_1:+46018973 | None:intergenic |
| GAAGGAGAGGGTATTCGAGA+GGG | 0.539442 | 2_1:+46021317 | None:intergenic |
| CCTCCTTACAAAGAATATGA+AGG | 0.541969 | 2_1:-46017922 | Msa0209150:CDS |
| ATTCCACTCCACGACCATCC+TGG | 0.548171 | 2_1:-46018981 | Msa0209150:CDS |
| AGTAACACCTTGTGCCATGC+TGG | 0.552124 | 2_1:-46017956 | Msa0209150:CDS |
| AGAAGGAGAGGGTATTCGAG+AGG | 0.563490 | 2_1:+46021316 | None:intergenic |
| ATCGTAGAAAGCAAGGGACC+AGG | 0.571016 | 2_1:-46018885 | Msa0209150:CDS |
| AACTGAGTAGAGTAGCTCGA+TGG | 0.572729 | 2_1:-46019567 | Msa0209150:CDS |
| GGCTAAGCCGATAACATATG+TGG | 0.574054 | 2_1:-46019545 | Msa0209150:CDS |
| ACCCTGCATCGTAGAAAGCA+AGG | 0.581412 | 2_1:-46018892 | Msa0209150:CDS |
| GTATTTAGCAAACTTCTGTA+CGG | 0.582160 | 2_1:-46018951 | Msa0209150:CDS |
| CTTACAAAGAATATGAAGGA+AGG | 0.584870 | 2_1:-46017918 | Msa0209150:CDS |
| GTTATACCTTGAGCATGTCC+TGG | 0.591297 | 2_1:+46018867 | None:intergenic |
| ATCGAGCTACTCTACTCAGT+TGG | 0.601211 | 2_1:+46019569 | None:intergenic |
| CAAAGCTTGAGAAGAAGGAG+AGG | 0.602581 | 2_1:+46021304 | None:intergenic |
| ATTCCAGGATGGTCGTGGAG+TGG | 0.604414 | 2_1:+46018978 | None:intergenic |
| ATGAATAGTGGTGTATATGC+TGG | 0.608159 | 2_1:-46016583 | Msa0209150:CDS |
| ACTGAGTAGAGTAGCTCGAT+GGG | 0.614850 | 2_1:-46019566 | Msa0209150:CDS |
| ATCTATATGTGATGGTGAAG+AGG | 0.617898 | 2_1:-46016650 | Msa0209150:CDS |
| TGAATATGCTTGGCTTGCAG+AGG | 0.619118 | 2_1:-46016626 | Msa0209150:CDS |
| GTGAAGAGGATGAATATGCT+TGG | 0.619635 | 2_1:-46016636 | Msa0209150:CDS |
| AAGCTGCAGACGATGATCGA+GGG | 0.621450 | 2_1:-46019612 | Msa0209150:CDS |
| AGGTGCGAGAACGTCCAGCA+TGG | 0.623380 | 2_1:+46017942 | None:intergenic |
| AGAACGTCCAGCATGGCACA+AGG | 0.628704 | 2_1:+46017949 | None:intergenic |
| GAAGCTGCAGACGATGATCG+AGG | 0.636302 | 2_1:-46019613 | Msa0209150:CDS |
| AAGGGACCAGGACATGCTCA+AGG | 0.639003 | 2_1:-46018873 | Msa0209150:intron |
| AACAGTGAATATTTCCACCA+CGG | 0.639958 | 2_1:+46017986 | None:intergenic |
| AGTTGATGTTGGGCTAAAGG+AGG | 0.645564 | 2_1:-46019635 | Msa0209150:CDS |
| CCCTGCATCGTAGAAAGCAA+GGG | 0.655648 | 2_1:-46018891 | Msa0209150:CDS |
| ACATGTGAAAGCTTATGACT+GGG | 0.657723 | 2_1:-46018922 | Msa0209150:CDS |
| TAAATACGGTCATTCCAGGA+TGG | 0.667422 | 2_1:+46018967 | None:intergenic |
| ACTTGTACAGAACAAGAACA+TGG | 0.670609 | 2_1:-46021429 | Msa0209150:CDS |
| GGAAATGGATCTATATGTGA+TGG | 0.678954 | 2_1:-46016658 | Msa0209150:CDS |
| AAAGCTTGAGAAGAAGGAGA+GGG | 0.689346 | 2_1:+46021305 | None:intergenic |
| TTGCTTTCTACGATGCAGGG+TGG | 0.704355 | 2_1:+46018894 | None:intergenic |
| TATAAAACTGATGTTTCACA+TGG | 0.754209 | 2_1:+46018015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATAAATAATCTATCA+CGG | - | chr2_1:46018161-46018180 | Msa0209150:intron | 10.0% |
| !!! | ATTTTAAATAAAGATATTAG+TGG | + | chr2_1:46020280-46020299 | None:intergenic | 10.0% |
| !!! | TTCTTGTTATAATATTTTAT+CGG | - | chr2_1:46021050-46021069 | Msa0209150:intron | 10.0% |
| !! | GAACTATTTATTATATTCTA+TGG | - | chr2_1:46017788-46017807 | Msa0209150:intron | 15.0% |
| !! | TCTTATGAAAAGTTTATTTA+TGG | - | chr2_1:46017971-46017990 | Msa0209150:CDS | 15.0% |
| !! | AAGGGAATTATAAATTAAAT+TGG | - | chr2_1:46019602-46019621 | Msa0209150:CDS | 15.0% |
| !!! | GATAATAAATGTTGCAATTT+TGG | + | chr2_1:46016489-46016508 | None:intergenic | 20.0% |
| !! | TCTTGTAAAAAAGAGAAATT+TGG | - | chr2_1:46016704-46016723 | Msa0209150:intron | 20.0% |
| !! | CTTGTAAAAAAGAGAAATTT+GGG | - | chr2_1:46016705-46016724 | Msa0209150:intron | 20.0% |
| !!! | AACTTTTATGAGTTATTGTT+TGG | - | chr2_1:46016880-46016899 | Msa0209150:intron | 20.0% |
| !! | TTTATTATATTCTATGGATC+AGG | - | chr2_1:46017794-46017813 | Msa0209150:intron | 20.0% |
| !!! | TACTTTAAGAATAAAATCGA+AGG | - | chr2_1:46017839-46017858 | Msa0209150:intron | 20.0% |
| !!! | TCTAGCTTTCTTATTAAAAA+AGG | - | chr2_1:46017927-46017946 | Msa0209150:CDS | 20.0% |
| !! | CTTTCTTATTAAAAAAGGTT+GGG | - | chr2_1:46017932-46017951 | Msa0209150:CDS | 20.0% |
| !! | ATAATCAGAGAATATGATAT+TGG | - | chr2_1:46018047-46018066 | Msa0209150:CDS | 20.0% |
| !! | CAGATTATATAACTTATTGT+GGG | + | chr2_1:46018599-46018618 | None:intergenic | 20.0% |
| !!! | GGATATAATTTGAAACATTT+TGG | + | chr2_1:46019268-46019287 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTCTTTTCGAAAT+TGG | - | chr2_1:46019575-46019594 | Msa0209150:CDS | 20.0% |
| !! | CATTATCGAATATAATATTC+AGG | - | chr2_1:46019748-46019767 | Msa0209150:intron | 20.0% |
| !! | ATTTATATCAAACAGTAATC+TGG | - | chr2_1:46020131-46020150 | Msa0209150:intron | 20.0% |
| !! | ACTATTAAGAGAAATTATCA+AGG | - | chr2_1:46020928-46020947 | Msa0209150:intron | 20.0% |
| !! | AATAAAGATGTTATGAAACA+CGG | + | chr2_1:46021238-46021257 | None:intergenic | 20.0% |
| !! | CTATTCATATAAAGATTACT+AGG | + | chr2_1:46021361-46021380 | None:intergenic | 20.0% |
| !! | AGTAATCTTTATATGAATAG+TGG | - | chr2_1:46021361-46021380 | Msa0209150:CDS | 20.0% |
| !!! | TATTTTCTTGTGTAAAAGAA+TGG | - | chr2_1:46021445-46021464 | Msa0209150:exon | 20.0% |
| !! | AAAAGAGAAATTTGGGTTTA+TGG | - | chr2_1:46016712-46016731 | Msa0209150:intron | 25.0% |
| !! | AAAGAGAAATTTGGGTTTAT+GGG | - | chr2_1:46016713-46016732 | Msa0209150:intron | 25.0% |
| !! | AAATGTTTTTCCATATGCAT+CGG | + | chr2_1:46017321-46017340 | None:intergenic | 25.0% |
| ! | CATATGGAAAAACATTTGTT+GGG | - | chr2_1:46017324-46017343 | Msa0209150:intron | 25.0% |
| ! | ACCTTGGTTTACAAAAAAAA+CGG | - | chr2_1:46017410-46017429 | Msa0209150:intron | 25.0% |
| ! | ATCAGAATAGAAAGTAATTG+AGG | - | chr2_1:46017748-46017767 | Msa0209150:intron | 25.0% |
| ! | ATCGAAGGTTTATTCTTTAT+TGG | - | chr2_1:46017854-46017873 | Msa0209150:intron | 25.0% |
| ! | TCGAAGGTTTATTCTTTATT+GGG | - | chr2_1:46017855-46017874 | Msa0209150:intron | 25.0% |
| ! | GCTTTCTTATTAAAAAAGGT+TGG | - | chr2_1:46017931-46017950 | Msa0209150:CDS | 25.0% |
| !!! | CTGTTAATGTTTAACTTGTT+TGG | - | chr2_1:46018074-46018093 | Msa0209150:intron | 25.0% |
| !! | GTCTGTATTTTCATATGAAA+TGG | + | chr2_1:46018187-46018206 | None:intergenic | 25.0% |
| !!! | TGTTACGTTATTTTGAGTAA+TGG | - | chr2_1:46018245-46018264 | Msa0209150:intron | 25.0% |
| ! | AGTATTTATGATTCATGACT+CGG | - | chr2_1:46018282-46018301 | Msa0209150:intron | 25.0% |
| !!! | TCATGAATCTGATAGTTTTA+CGG | - | chr2_1:46018438-46018457 | Msa0209150:intron | 25.0% |
| ! | GCAGATTATATAACTTATTG+TGG | + | chr2_1:46018600-46018619 | None:intergenic | 25.0% |
| ! | ATAAGTTATATAATCTGCCA+TGG | - | chr2_1:46018602-46018621 | Msa0209150:intron | 25.0% |
| ! | ATCGAGTAAATACAATATAC+AGG | + | chr2_1:46019114-46019133 | None:intergenic | 25.0% |
| !! | TTGGTGTAAAAAAGGTATAA+GGG | - | chr2_1:46019306-46019325 | Msa0209150:intron | 25.0% |
| ! | AATCAGTATAAACCAAAACA+TGG | + | chr2_1:46019531-46019550 | None:intergenic | 25.0% |
| !!! | ATGTTTTGGTTTATACTGAT+TGG | - | chr2_1:46019530-46019549 | Msa0209150:CDS | 25.0% |
| !!! | TGTTTTGGTTTATACTGATT+GGG | - | chr2_1:46019531-46019550 | Msa0209150:CDS | 25.0% |
| ! | AGGGTTTATATCATTAAACA+TGG | + | chr2_1:46019809-46019828 | None:intergenic | 25.0% |
| ! | ACAATGAAAAAACAAAACCA+TGG | + | chr2_1:46019875-46019894 | None:intergenic | 25.0% |
| ! | TATAAAACTGATGTTTCACA+TGG | + | chr2_1:46019944-46019963 | None:intergenic | 25.0% |
| ! | TACTTACAGAATGTTGAATA+AGG | + | chr2_1:46020088-46020107 | None:intergenic | 25.0% |
| ! | ATGAATAGTAAGGCTAATAT+AGG | + | chr2_1:46020307-46020326 | None:intergenic | 25.0% |
| !!! | TGCTTAATTTATTTTCGTGT+TGG | + | chr2_1:46020606-46020625 | None:intergenic | 25.0% |
| !!! | TGCTTAATTTATTTTCGTGT+TGG | + | chr2_1:46020606-46020625 | None:intergenic | 25.0% |
| ! | AGTACATATAGTAGAAAAGA+TGG | - | chr2_1:46020784-46020803 | Msa0209150:intron | 25.0% |
| ! | TAATGAGCTGCATAAAAATA+TGG | - | chr2_1:46020961-46020980 | Msa0209150:intron | 25.0% |
| ! | ACAAGTTTATCATACTAAGT+GGG | + | chr2_1:46021031-46021050 | None:intergenic | 25.0% |
| ! | AACAAGTTTATCATACTAAG+TGG | + | chr2_1:46021032-46021051 | None:intergenic | 25.0% |
| !! | TATTTTATCGGAGATATAGT+AGG | - | chr2_1:46021062-46021081 | Msa0209150:intron | 25.0% |
| !!! | TTCTGGTTTTCTTTTTACTG+TGG | + | chr2_1:46016459-46016478 | None:intergenic | 30.0% |
| ! | AATCTTGAACCTTAGAGTTT+TGG | + | chr2_1:46016590-46016609 | None:intergenic | 30.0% |
| CACAAACTTTCTTCAATTCT+CGG | - | chr2_1:46016675-46016694 | Msa0209150:intron | 30.0% | |
| !! | TTTATGGGTATTTTAAGTGG+TGG | - | chr2_1:46016728-46016747 | Msa0209150:intron | 30.0% |
| ! | GTTGTTGTTGTGAAAATTGT+TGG | - | chr2_1:46016750-46016769 | Msa0209150:intron | 30.0% |
| TGTTTGTGTTAATGACTCTT+TGG | - | chr2_1:46016778-46016797 | Msa0209150:intron | 30.0% | |
| TAATGACTCTTTGGATTGTT+TGG | - | chr2_1:46016787-46016806 | Msa0209150:intron | 30.0% | |
| ATCGTCTATCCTTAGTTAAA+AGG | - | chr2_1:46016916-46016935 | Msa0209150:intron | 30.0% | |
| ACATCTAAAAGTTTCTACCA+AGG | + | chr2_1:46016944-46016963 | None:intergenic | 30.0% | |
| ! | GTAGAAACTTTTAGATGTTC+TGG | - | chr2_1:46016946-46016965 | Msa0209150:intron | 30.0% |
| TTCAGTGTAATTATATGTGC+CGG | + | chr2_1:46017038-46017057 | None:intergenic | 30.0% | |
| ACATAGGTTTCTTAACCATT+TGG | - | chr2_1:46017276-46017295 | Msa0209150:intron | 30.0% | |
| GCATATGGAAAAACATTTGT+TGG | - | chr2_1:46017323-46017342 | Msa0209150:intron | 30.0% | |
| GGTTACTGATATCCATTTAA+GGG | + | chr2_1:46017353-46017372 | None:intergenic | 30.0% | |
| AGGTTACTGATATCCATTTA+AGG | + | chr2_1:46017354-46017373 | None:intergenic | 30.0% | |
| !! | TTGAGGATATAATGGGTTAA+AGG | - | chr2_1:46017534-46017553 | Msa0209150:intron | 30.0% |
| !! | TGAGGATATAATGGGTTAAA+GGG | - | chr2_1:46017535-46017554 | Msa0209150:intron | 30.0% |
| AACTAAGAACAAAACCATCA+GGG | + | chr2_1:46017635-46017654 | None:intergenic | 30.0% | |
| TAACTAAGAACAAAACCATC+AGG | + | chr2_1:46017636-46017655 | None:intergenic | 30.0% | |
| !!! | TGGTTTTGTTCTTAGTTACA+AGG | - | chr2_1:46017638-46017657 | Msa0209150:intron | 30.0% |
| CGAAGGTTTATTCTTTATTG+GGG | - | chr2_1:46017856-46017875 | Msa0209150:intron | 30.0% | |
| ! | AACAGCGAAAGCTAATTTTT+CGG | + | chr2_1:46017903-46017922 | None:intergenic | 30.0% |
| ! | AAGCTTTTACTCTGATTCTT+AGG | - | chr2_1:46018137-46018156 | Msa0209150:intron | 30.0% |
| ! | ACTATTAAACCAGTTGATGT+TGG | - | chr2_1:46018310-46018329 | Msa0209150:intron | 30.0% |
| ! | CTATTAAACCAGTTGATGTT+GGG | - | chr2_1:46018311-46018330 | Msa0209150:intron | 30.0% |
| TGAATGTCCACATATGTTAT+CGG | + | chr2_1:46018421-46018440 | None:intergenic | 30.0% | |
| GGAAAACAAAAAACTATGAG+TGG | + | chr2_1:46018578-46018597 | None:intergenic | 30.0% | |
| !! | GTCTTGTTATTACGTTAATC+CGG | - | chr2_1:46018830-46018849 | Msa0209150:intron | 30.0% |
| !! | GTACAGAAGTTTGCTAAATA+CGG | + | chr2_1:46019006-46019025 | None:intergenic | 30.0% |
| GTATTTAGCAAACTTCTGTA+CGG | - | chr2_1:46019005-46019024 | Msa0209150:CDS | 30.0% | |
| ATGAGTGTGTATTATCCTTT+GGG | - | chr2_1:46019231-46019250 | Msa0209150:intron | 30.0% | |
| TTGGTAAAATAACATCCCAA+AGG | + | chr2_1:46019249-46019268 | None:intergenic | 30.0% | |
| TTTCAAATTATATCCTCCCT+TGG | - | chr2_1:46019273-46019292 | Msa0209150:intron | 30.0% | |
| ! | GTTGGTGTAAAAAAGGTATA+AGG | - | chr2_1:46019305-46019324 | Msa0209150:intron | 30.0% |
| ! | TGGTGTAAAAAAGGTATAAG+GGG | - | chr2_1:46019307-46019326 | Msa0209150:intron | 30.0% |
| TTTATCTGACTTTGCATGTA+TGG | - | chr2_1:46019391-46019410 | Msa0209150:intron | 30.0% | |
| AGTTTGCAACAATTTCCATT+AGG | + | chr2_1:46019427-46019446 | None:intergenic | 30.0% | |
| ! | ACTTTCATTATGCCATGTTT+TGG | - | chr2_1:46019516-46019535 | Msa0209150:intron | 30.0% |
| ! | TCTTTTCGAAATTGGAGAAA+AGG | - | chr2_1:46019583-46019602 | Msa0209150:CDS | 30.0% |
| ! | CTTTTCGAAATTGGAGAAAA+GGG | - | chr2_1:46019584-46019603 | Msa0209150:CDS | 30.0% |
| CTGAGTTAATACCTCATAAA+CGG | - | chr2_1:46019702-46019721 | Msa0209150:intron | 30.0% | |
| AAATAGGGATGAAAAAGGAA+GGG | + | chr2_1:46019828-46019847 | None:intergenic | 30.0% | |
| AAAATAGGGATGAAAAAGGA+AGG | + | chr2_1:46019829-46019848 | None:intergenic | 30.0% | |
| !! | TTCCTTTTTCATCCCTATTT+TGG | - | chr2_1:46019828-46019847 | Msa0209150:intron | 30.0% |
| TTCCAAAATAGGGATGAAAA+AGG | + | chr2_1:46019833-46019852 | None:intergenic | 30.0% | |
| CTTCCTTCATATTCTTTGTA+AGG | + | chr2_1:46020040-46020059 | None:intergenic | 30.0% | |
| CTTACAAAGAATATGAAGGA+AGG | - | chr2_1:46020038-46020057 | Msa0209150:intron | 30.0% | |
| !! | ATGAGACAAATGTTCTAAAG+AGG | + | chr2_1:46020211-46020230 | None:intergenic | 30.0% |
| AGACTTTGATTCATGTCATA+GGG | + | chr2_1:46020402-46020421 | None:intergenic | 30.0% | |
| TAGACTTTGATTCATGTCAT+AGG | + | chr2_1:46020403-46020422 | None:intergenic | 30.0% | |
| GGGAAAATCTTATCGAAAAA+CGG | - | chr2_1:46020536-46020555 | Msa0209150:intron | 30.0% | |
| TAGAGATTAGAATGTTGTGT+TGG | - | chr2_1:46020629-46020648 | Msa0209150:intron | 30.0% | |
| TAGAGATTAGAATGTTGTGT+TGG | - | chr2_1:46020629-46020648 | Msa0209150:intron | 30.0% | |
| ACGACATTAGATACATAGTT+GGG | - | chr2_1:46020759-46020778 | Msa0209150:intron | 30.0% | |
| ACATATAGTAGAAAAGATGG+CGG | - | chr2_1:46020787-46020806 | Msa0209150:intron | 30.0% | |
| CAAGTTTATCATACTAAGTG+GGG | + | chr2_1:46021030-46021049 | None:intergenic | 30.0% | |
| ! | ATAGTAGGTTAGTTACTAGT+TGG | - | chr2_1:46021077-46021096 | Msa0209150:intron | 30.0% |
| ACTACCTTAAGCCTATTTAT+AGG | + | chr2_1:46021126-46021145 | None:intergenic | 30.0% | |
| TTCTTGTGTAAAAGAATGGA+TGG | - | chr2_1:46021449-46021468 | Msa0209150:exon | 30.0% | |
| AGAATGGATGGTATTATTGT+TGG | - | chr2_1:46021461-46021480 | Msa0209150:exon | 30.0% | |
| ! | GGTTTTCTTTTTACTGTGGT+CGG | + | chr2_1:46016455-46016474 | None:intergenic | 35.0% |
| !!! | GCAATTTTGGAACTCATTTC+TGG | + | chr2_1:46016476-46016495 | None:intergenic | 35.0% |
| ACTTGTACAGAACAAGAACA+TGG | - | chr2_1:46016527-46016546 | Msa0209150:three_prime_UTR | 35.0% | |
| ! | TATGAAGCACCAAAACTCTA+AGG | - | chr2_1:46016578-46016597 | Msa0209150:CDS | 35.0% |
| !!! | GAGAGAAAGTGTTTTTACAG+TGG | + | chr2_1:46016620-46016639 | None:intergenic | 35.0% |
| !! | GGGTTTATGGGTATTTTAAG+TGG | - | chr2_1:46016725-46016744 | Msa0209150:intron | 35.0% |
| ACTAAGGATAGACGATTTAC+AGG | + | chr2_1:46016912-46016931 | None:intergenic | 35.0% | |
| GTTTGTGCTTCATAATTCGA+GGG | + | chr2_1:46016980-46016999 | None:intergenic | 35.0% | |
| TGTTTGTGCTTCATAATTCG+AGG | + | chr2_1:46016981-46017000 | None:intergenic | 35.0% | |
| TATTAGCAATGTCTGTGTGT+CGG | - | chr2_1:46017077-46017096 | Msa0209150:intron | 35.0% | |
| ! | GGGCTTAAAAAGTTCTAATG+AGG | + | chr2_1:46017189-46017208 | None:intergenic | 35.0% |
| !! | AGCTCTGGAAAAAACTGTAA+GGG | + | chr2_1:46017209-46017228 | None:intergenic | 35.0% |
| !! | TAGCTCTGGAAAAAACTGTA+AGG | + | chr2_1:46017210-46017229 | None:intergenic | 35.0% |
| !!! | CAGTTTTTTCCAGAGCTAAA+AGG | - | chr2_1:46017212-46017231 | Msa0209150:intron | 35.0% |
| ACAAGTGGTAGTAGATACAT+AGG | - | chr2_1:46017260-46017279 | Msa0209150:intron | 35.0% | |
| GAAACGAATCTTAGACCAAA+TGG | + | chr2_1:46017294-46017313 | None:intergenic | 35.0% | |
| ! | TTGGTCTAAGATTCGTTTCT+TGG | - | chr2_1:46017295-46017314 | Msa0209150:intron | 35.0% |
| AATGGATATCAGTAACCTTG+AGG | - | chr2_1:46017356-46017375 | Msa0209150:intron | 35.0% | |
| ATGGATATCAGTAACCTTGA+GGG | - | chr2_1:46017357-46017376 | Msa0209150:intron | 35.0% | |
| !!! | GCCGTTTTTTTTGTAAACCA+AGG | + | chr2_1:46017414-46017433 | None:intergenic | 35.0% |
| AAAAAAAACGGCATCTCAGT+AGG | - | chr2_1:46017422-46017441 | Msa0209150:intron | 35.0% | |
| CAAAAATTTCCACGTGACTT+AGG | + | chr2_1:46017489-46017508 | None:intergenic | 35.0% | |
| ! | CTAAGTCACGTGGAAATTTT+TGG | - | chr2_1:46017487-46017506 | Msa0209150:intron | 35.0% |
| CAACTAGAGCAATACTGTTT+AGG | + | chr2_1:46017517-46017536 | None:intergenic | 35.0% | |
| AAACAGTATTGCTCTAGTTG+AGG | - | chr2_1:46017517-46017536 | Msa0209150:intron | 35.0% | |
| TGCTCTAGTTGAGGATATAA+TGG | - | chr2_1:46017526-46017545 | Msa0209150:intron | 35.0% | |
| GCTCTAGTTGAGGATATAAT+GGG | - | chr2_1:46017527-46017546 | Msa0209150:intron | 35.0% | |
| ! | TTAGTTACAAGGCATCTATG+CGG | - | chr2_1:46017649-46017668 | Msa0209150:intron | 35.0% |
| TGCTTGCAAATCAAGACTAA+TGG | + | chr2_1:46017709-46017728 | None:intergenic | 35.0% | |
| ! | GCAAGCAATGTGATTCTTTT+TGG | - | chr2_1:46017722-46017741 | Msa0209150:intron | 35.0% |
| ! | ACAGCGAAAGCTAATTTTTC+GGG | + | chr2_1:46017902-46017921 | None:intergenic | 35.0% |
| TCACGTTCTTACAACTTATG+AGG | + | chr2_1:46018548-46018567 | None:intergenic | 35.0% | |
| GAAATTGTATATGGAGTCCA+TGG | + | chr2_1:46018622-46018641 | None:intergenic | 35.0% | |
| GTCGTCGAAGAAATTGTATA+TGG | + | chr2_1:46018631-46018650 | None:intergenic | 35.0% | |
| AACACACAAACTGACTATCA+TGG | + | chr2_1:46018655-46018674 | None:intergenic | 35.0% | |
| ATAGTCAGTTTGTGTGTTTG+TGG | - | chr2_1:46018657-46018676 | Msa0209150:intron | 35.0% | |
| TAGTCAGTTTGTGTGTTTGT+GGG | - | chr2_1:46018658-46018677 | Msa0209150:intron | 35.0% | |
| TGACACGGTAAATCTTCATT+AGG | + | chr2_1:46018783-46018802 | None:intergenic | 35.0% | |
| !! | TTGGCTTTATTTGACTGACA+CGG | + | chr2_1:46018798-46018817 | None:intergenic | 35.0% |
| ! | GAGAAGTGAGGTATTTGAAT+TGG | - | chr2_1:46018914-46018933 | Msa0209150:CDS | 35.0% |
| GTGGAATAACTGAAGAAGTT+GGG | + | chr2_1:46018962-46018981 | None:intergenic | 35.0% | |
| AGTGGAATAACTGAAGAAGT+TGG | + | chr2_1:46018963-46018982 | None:intergenic | 35.0% | |
| TACATGTGAAAGCTTATGAC+TGG | - | chr2_1:46019033-46019052 | Msa0209150:intron | 35.0% | |
| ACATGTGAAAGCTTATGACT+GGG | - | chr2_1:46019034-46019053 | Msa0209150:intron | 35.0% | |
| CATGAGTGTGTATTATCCTT+TGG | - | chr2_1:46019230-46019249 | Msa0209150:intron | 35.0% | |
| TTGCAACAATTTCCATTAGG+TGG | + | chr2_1:46019424-46019443 | None:intergenic | 35.0% | |
| !! | TGTCTAAGTTGATCACAGTA+AGG | + | chr2_1:46019457-46019476 | None:intergenic | 35.0% |
| ! | TTGGTTTATACTGATTGGGT+CGG | - | chr2_1:46019535-46019554 | Msa0209150:CDS | 35.0% |
| ! | CATTTTACAATCGTTTCCGA+GGG | - | chr2_1:46019635-46019654 | Msa0209150:CDS | 35.0% |
| ! | ATTTTACAATCGTTTCCGAG+GGG | - | chr2_1:46019636-46019655 | Msa0209150:CDS | 35.0% |
| ACTCAGAACTTGAGGTTATA+TGG | - | chr2_1:46019665-46019684 | Msa0209150:intron | 35.0% | |
| TACCAGGTAGTTCCAAAATA+GGG | + | chr2_1:46019843-46019862 | None:intergenic | 35.0% | |
| ATACCAGGTAGTTCCAAAAT+AGG | + | chr2_1:46019844-46019863 | None:intergenic | 35.0% | |
| TTTCATTGTTGCAGTAAGAC+TGG | - | chr2_1:46019886-46019905 | Msa0209150:intron | 35.0% | |
| !! | TCAGTTTTATATCCAAACCG+TGG | - | chr2_1:46019953-46019972 | Msa0209150:intron | 35.0% |
| AACAGTGAATATTTCCACCA+CGG | + | chr2_1:46019973-46019992 | None:intergenic | 35.0% | |
| CCTTCATATTCTTTGTAAGG+AGG | + | chr2_1:46020037-46020056 | None:intergenic | 35.0% | |
| CCTCCTTACAAAGAATATGA+AGG | - | chr2_1:46020034-46020053 | Msa0209150:intron | 35.0% | |
| AGAGGACAGTTAATATGAGA+CGG | + | chr2_1:46020193-46020212 | None:intergenic | 35.0% | |
| !! | TTAGCCTTACTATTCATAGC+CGG | - | chr2_1:46020310-46020329 | Msa0209150:intron | 35.0% |
| GTAAAAAACAGCGAAGAGAT+AGG | - | chr2_1:46020425-46020444 | Msa0209150:intron | 35.0% | |
| ! | AAAGTACCACTCAAACTGAA+GGG | - | chr2_1:46020516-46020535 | Msa0209150:intron | 35.0% |
| TTATCGAAAAACGGTAAGAC+CGG | - | chr2_1:46020545-46020564 | Msa0209150:intron | 35.0% | |
| GTGGTAAGACTAGACAAAAT+AGG | - | chr2_1:46020726-46020745 | Msa0209150:intron | 35.0% | |
| GACGACATTAGATACATAGT+TGG | - | chr2_1:46020758-46020777 | Msa0209150:intron | 35.0% | |
| CGACATTAGATACATAGTTG+GGG | - | chr2_1:46020760-46020779 | Msa0209150:intron | 35.0% | |
| AACTAGACTTACGTAGTGTT+TGG | - | chr2_1:46020811-46020830 | Msa0209150:intron | 35.0% | |
| ACTAGACTTACGTAGTGTTT+GGG | - | chr2_1:46020812-46020831 | Msa0209150:intron | 35.0% | |
| ! | GACTTGTGGATTATGTAGTA+AGG | - | chr2_1:46020848-46020867 | Msa0209150:intron | 35.0% |
| AGTAAGGAGAGTAGATCAAA+TGG | - | chr2_1:46020864-46020883 | Msa0209150:intron | 35.0% | |
| TTCATCTACCTCTAGTGATT+TGG | + | chr2_1:46020897-46020916 | None:intergenic | 35.0% | |
| TTTATCATACTAAGTGGGGT+CGG | + | chr2_1:46021026-46021045 | None:intergenic | 35.0% | |
| ! | GTTAGTTGGTGCCTATAAAT+AGG | - | chr2_1:46021112-46021131 | Msa0209150:intron | 35.0% |
| GGAAATGGATCTATATGTGA+TGG | - | chr2_1:46021298-46021317 | Msa0209150:CDS | 35.0% | |
| ! | ATCTATATGTGATGGTGAAG+AGG | - | chr2_1:46021306-46021325 | Msa0209150:CDS | 35.0% |
| ATGAATAGTGGTGTATATGC+TGG | - | chr2_1:46021373-46021392 | Msa0209150:CDS | 35.0% | |
| !!! | AACAGTTTTTGGTGGTGGAT+CGG | - | chr2_1:46016427-46016446 | Msa0209150:three_prime_UTR | 40.0% |
| AAAGCTTGAGAAGAAGGAGA+GGG | + | chr2_1:46016654-46016673 | None:intergenic | 40.0% | |
| TTGTGCAAAGCTTGAGAAGA+AGG | + | chr2_1:46016660-46016679 | None:intergenic | 40.0% | |
| GAATATGTTGCATAGCTGAG+TGG | - | chr2_1:46016833-46016852 | Msa0209150:intron | 40.0% | |
| TATGAAGCACAAACACTCCT+CGG | - | chr2_1:46016986-46017005 | Msa0209150:intron | 40.0% | |
| GCCTCAGTACCAACATAAAA+TGG | - | chr2_1:46017236-46017255 | Msa0209150:intron | 40.0% | |
| !! | GCCATTTTATGTTGGTACTG+AGG | + | chr2_1:46017240-46017259 | None:intergenic | 40.0% |
| !!! | CCACTTGTGCCATTTTATGT+TGG | + | chr2_1:46017248-46017267 | None:intergenic | 40.0% |
| CCAACATAAAATGGCACAAG+TGG | - | chr2_1:46017245-46017264 | Msa0209150:intron | 40.0% | |
| TTTGTTGGGAGACCCTTAAA+TGG | - | chr2_1:46017338-46017357 | Msa0209150:intron | 40.0% | |
| TGGATATCAGTAACCTTGAG+GGG | - | chr2_1:46017358-46017377 | Msa0209150:intron | 40.0% | |
| TGACTTAGGAATTGAGGCTA+AGG | + | chr2_1:46017475-46017494 | None:intergenic | 40.0% | |
| CAGACAGTATTTCGGAAAAG+CGG | + | chr2_1:46017594-46017613 | None:intergenic | 40.0% | |
| AGACTTGGCAGACAGTATTT+CGG | + | chr2_1:46017602-46017621 | None:intergenic | 40.0% | |
| ! | TAGTTACAAGGCATCTATGC+GGG | - | chr2_1:46017650-46017669 | Msa0209150:intron | 40.0% |
| TTCGGGCTACAATTCATCTT+GGG | + | chr2_1:46017885-46017904 | None:intergenic | 40.0% | |
| TTTCGGGCTACAATTCATCT+TGG | + | chr2_1:46017886-46017905 | None:intergenic | 40.0% | |
| TATTTATGGAGACTTCGCTC+TGG | - | chr2_1:46017985-46018004 | Msa0209150:CDS | 40.0% | |
| AGTTTGTGTGTTTGTGGGTA+TGG | - | chr2_1:46018663-46018682 | Msa0209150:intron | 40.0% | |
| GATGTTATGATGCAAGCATC+CGG | + | chr2_1:46018852-46018871 | None:intergenic | 40.0% | |
| ACTGTTCGAAATGAGAAGTG+AGG | - | chr2_1:46018902-46018921 | Msa0209150:CDS | 40.0% | |
| TAAATACGGTCATTCCAGGA+TGG | + | chr2_1:46018992-46019011 | None:intergenic | 40.0% | |
| TTGCTAAATACGGTCATTCC+AGG | + | chr2_1:46018996-46019015 | None:intergenic | 40.0% | |
| TATGGACAAAAGCCACCTAA+TGG | - | chr2_1:46019409-46019428 | Msa0209150:intron | 40.0% | |
| CCTCGGAAACGATTGTAAAA+TGG | + | chr2_1:46019637-46019656 | None:intergenic | 40.0% | |
| ! | CCATTTTACAATCGTTTCCG+AGG | - | chr2_1:46019634-46019653 | Msa0209150:CDS | 40.0% |
| GGATTTGAACTCAGAACTTG+AGG | - | chr2_1:46019657-46019676 | Msa0209150:intron | 40.0% | |
| ! | GACTAAAGTGTCCGTTTATG+AGG | + | chr2_1:46019716-46019735 | None:intergenic | 40.0% |
| !!! | ATCCCTATTTTGGAACTACC+TGG | - | chr2_1:46019838-46019857 | Msa0209150:intron | 40.0% |
| ACCTGGTATCTGTATTTCCA+TGG | - | chr2_1:46019855-46019874 | Msa0209150:intron | 40.0% | |
| ACCATGGAAATACAGATACC+AGG | + | chr2_1:46019859-46019878 | None:intergenic | 40.0% | |
| ! | GGCAAAGTTAGCAGTTGATA+AGG | - | chr2_1:46019907-46019926 | Msa0209150:intron | 40.0% |
| ! | GTTTTATATCCAAACCGTGG+TGG | - | chr2_1:46019956-46019975 | Msa0209150:intron | 40.0% |
| TGAATATTTCCACCACGGTT+TGG | + | chr2_1:46019968-46019987 | None:intergenic | 40.0% | |
| GACAGTTAATATGAGACGGA+GGG | + | chr2_1:46020189-46020208 | None:intergenic | 40.0% | |
| GAGATGTAAACCACCGTATT+CGG | - | chr2_1:46020447-46020466 | Msa0209150:intron | 40.0% | |
| TTTCAACCACCAACCGAATA+CGG | + | chr2_1:46020463-46020482 | None:intergenic | 40.0% | |
| !! | TATTCGGTTGGTGGTTGAAA+TGG | - | chr2_1:46020463-46020482 | Msa0209150:intron | 40.0% |
| !! | GAAAGTACCACTCAAACTGA+AGG | - | chr2_1:46020515-46020534 | Msa0209150:intron | 40.0% |
| ! | GATTTTCCCTTCAGTTTGAG+TGG | + | chr2_1:46020525-46020544 | None:intergenic | 40.0% |
| GATGTTGTACTGGACAATGT+TGG | - | chr2_1:46020569-46020588 | Msa0209150:intron | 40.0% | |
| TTGTACTGGACAATGTTGGA+CGG | - | chr2_1:46020573-46020592 | Msa0209150:intron | 40.0% | |
| AGAATGTTGTGTTGGATGTG+TGG | - | chr2_1:46020637-46020656 | Msa0209150:intron | 40.0% | |
| TTGTGTTGGATGTGTGGTAA+GGG | - | chr2_1:46020643-46020662 | Msa0209150:intron | 40.0% | |
| AGAATGTTGTGTTGGATGTG+TGG | - | chr2_1:46020637-46020656 | Msa0209150:intron | 40.0% | |
| AAGGAGAGTAGATCAAATGG+AGG | - | chr2_1:46020867-46020886 | Msa0209150:intron | 40.0% | |
| AGGAGAGTAGATCAAATGGA+GGG | - | chr2_1:46020868-46020887 | Msa0209150:intron | 40.0% | |
| ! | GTAGGTTAGTTACTAGTTGG+TGG | - | chr2_1:46021080-46021099 | Msa0209150:intron | 40.0% |
| GGTGCCTATAAATAGGCTTA+AGG | - | chr2_1:46021119-46021138 | Msa0209150:intron | 40.0% | |
| GTTATGAAACACGGCATCAA+TGG | + | chr2_1:46021229-46021248 | None:intergenic | 40.0% | |
| GTGAAGAGGATGAATATGCT+TGG | - | chr2_1:46021320-46021339 | Msa0209150:CDS | 40.0% | |
| !! | CAGAGCTAAAGCTTTAAAGC+TGG | + | chr2_1:46021400-46021419 | None:intergenic | 40.0% |
| CAAAGCTTGAGAAGAAGGAG+AGG | + | chr2_1:46016655-46016674 | None:intergenic | 45.0% | |
| !! | TCCTTAGTTAAAAGGCGCCT+TGG | - | chr2_1:46016924-46016943 | Msa0209150:intron | 45.0% |
| !! | ACCAAGGCGCCTTTTAACTA+AGG | + | chr2_1:46016928-46016947 | None:intergenic | 45.0% |
| ATTGGCATGAAGCACGGATA+CGG | + | chr2_1:46017123-46017142 | None:intergenic | 45.0% | |
| CGTAACATTGGCATGAAGCA+CGG | + | chr2_1:46017129-46017148 | None:intergenic | 45.0% | |
| AAAAACGGCATCTCAGTAGG+TGG | - | chr2_1:46017425-46017444 | Msa0209150:intron | 45.0% | |
| TCTCAGTAGGTGGTTGAGTA+TGG | - | chr2_1:46017435-46017454 | Msa0209150:intron | 45.0% | |
| CTCAGTAGGTGGTTGAGTAT+GGG | - | chr2_1:46017436-46017455 | Msa0209150:intron | 45.0% | |
| CTTAGGAATTGAGGCTAAGG+TGG | + | chr2_1:46017472-46017491 | None:intergenic | 45.0% | |
| TCCACGTGACTTAGGAATTG+AGG | + | chr2_1:46017481-46017500 | None:intergenic | 45.0% | |
| CAAACTTAAGCCACACACGA+AGG | + | chr2_1:46017569-46017588 | None:intergenic | 45.0% | |
| ! | TCTATGCGGGTTGAGATGTT+TGG | - | chr2_1:46017663-46017682 | Msa0209150:intron | 45.0% |
| ! | CTATGCGGGTTGAGATGTTT+GGG | - | chr2_1:46017664-46017683 | Msa0209150:intron | 45.0% |
| ! | ACCAGTTGATGTTGGGCTAA+AGG | - | chr2_1:46018318-46018337 | Msa0209150:intron | 45.0% |
| TCCTTTAGCCCAACATCAAC+TGG | + | chr2_1:46018322-46018341 | None:intergenic | 45.0% | |
| ! | AGTTGATGTTGGGCTAAAGG+AGG | - | chr2_1:46018321-46018340 | Msa0209150:intron | 45.0% |
| ! | GATCGAGGGCTTGGATTTTT+CGG | - | chr2_1:46018358-46018377 | Msa0209150:intron | 45.0% |
| ATCGAGCTACTCTACTCAGT+TGG | + | chr2_1:46018390-46018409 | None:intergenic | 45.0% | |
| AACTGAGTAGAGTAGCTCGA+TGG | - | chr2_1:46018389-46018408 | Msa0209150:intron | 45.0% | |
| ACTGAGTAGAGTAGCTCGAT+GGG | - | chr2_1:46018390-46018409 | Msa0209150:intron | 45.0% | |
| GGCTAAGCCGATAACATATG+TGG | - | chr2_1:46018411-46018430 | Msa0209150:intron | 45.0% | |
| TGTGTTTGTGGGTATGGCTA+TGG | - | chr2_1:46018669-46018688 | Msa0209150:intron | 45.0% | |
| ACAAGACGCAATGAGCAGTT+TGG | + | chr2_1:46018817-46018836 | None:intergenic | 45.0% | |
| GTTATACCTTGAGCATGTCC+TGG | + | chr2_1:46019092-46019111 | None:intergenic | 45.0% | |
| ! | GCGTGCAGTTGGTGTAAAAA+AGG | - | chr2_1:46019298-46019317 | Msa0209150:intron | 45.0% |
| ! | GTTCTGAGTTCAAATCCCCT+CGG | + | chr2_1:46019654-46019673 | None:intergenic | 45.0% |
| GGACAGTTAATATGAGACGG+AGG | + | chr2_1:46020190-46020209 | None:intergenic | 45.0% | |
| ! | CCTCTTCTTTTACCCGACTT+GGG | + | chr2_1:46020337-46020356 | None:intergenic | 45.0% |
| CCAAGTCGGGTAAAAGAAGA+GGG | - | chr2_1:46020335-46020354 | Msa0209150:intron | 45.0% | |
| AAGAGGGTTGTGGTAGACTT+GGG | - | chr2_1:46020351-46020370 | Msa0209150:intron | 45.0% | |
| TGTAAACCACCGTATTCGGT+TGG | - | chr2_1:46020451-46020470 | Msa0209150:intron | 45.0% | |
| ! | TTGGTGGTTGAAATGGAGGA+GGG | - | chr2_1:46020470-46020489 | Msa0209150:intron | 45.0% |
| ATTGTCCAGTACAACATCGC+CGG | + | chr2_1:46020567-46020586 | None:intergenic | 45.0% | |
| GTTGTGTTGGATGTGTGGTA+AGG | - | chr2_1:46020642-46020661 | Msa0209150:intron | 45.0% | |
| GCATGTAGAGAGAAGACTTG+TGG | - | chr2_1:46020834-46020853 | Msa0209150:intron | 45.0% | |
| GGAGAGTAGATCAAATGGAG+GGG | - | chr2_1:46020869-46020888 | Msa0209150:intron | 45.0% | |
| !! | GGTTAGTTACTAGTTGGTGG+TGG | - | chr2_1:46021083-46021102 | Msa0209150:intron | 45.0% |
| ! | GGTGGTGGTTACTAGTTAGT+TGG | - | chr2_1:46021098-46021117 | Msa0209150:intron | 45.0% |
| GTTTCCTAATCCACCTGCTT+TGG | - | chr2_1:46021262-46021281 | Msa0209150:intron | 45.0% | |
| ! | AGATCCAAAGCAGGTGGATT+AGG | + | chr2_1:46021269-46021288 | None:intergenic | 45.0% |
| !! | TGAATATGCTTGGCTTGCAG+AGG | - | chr2_1:46021330-46021349 | Msa0209150:CDS | 45.0% |
| !! | GAAGGAGAGGGTATTCGAGA+GGG | + | chr2_1:46016642-46016661 | None:intergenic | 50.0% |
| !! | AGAAGGAGAGGGTATTCGAG+AGG | + | chr2_1:46016643-46016662 | None:intergenic | 50.0% |
| GCACAAACACTCCTCGGATT+AGG | - | chr2_1:46016992-46017011 | Msa0209150:intron | 50.0% | |
| ATACGGACACAGACACGACA+CGG | + | chr2_1:46017106-46017125 | None:intergenic | 50.0% | |
| ! | TGGACTTGAGGGCGTAACAT+TGG | + | chr2_1:46017141-46017160 | None:intergenic | 50.0% |
| !!! | ACTGAGGCACCTTTTAGCTC+TGG | + | chr2_1:46017224-46017243 | None:intergenic | 50.0% |
| CGTTTCTTGGCCGATGCATA+TGG | - | chr2_1:46017308-46017327 | Msa0209150:intron | 50.0% | |
| TGTGCATGTGGAGGATACCT+TGG | - | chr2_1:46017394-46017413 | Msa0209150:intron | 50.0% | |
| GCCTCAATTCCTAAGTCACG+TGG | - | chr2_1:46017477-46017496 | Msa0209150:intron | 50.0% | |
| CAGGGCATGTACAGAAGACT+TGG | + | chr2_1:46017617-46017636 | None:intergenic | 50.0% | |
| GTCTTCTGTACATGCCCTGA+TGG | - | chr2_1:46017618-46017637 | Msa0209150:intron | 50.0% | |
| AAGCTGCAGACGATGATCGA+GGG | - | chr2_1:46018344-46018363 | Msa0209150:intron | 50.0% | |
| ! | TGCTGCTTGCATCTTAGCAG+AGG | + | chr2_1:46018708-46018727 | None:intergenic | 50.0% |
| TTGCTTTCTACGATGCAGGG+TGG | + | chr2_1:46019065-46019084 | None:intergenic | 50.0% | |
| ACCCTGCATCGTAGAAAGCA+AGG | - | chr2_1:46019064-46019083 | Msa0209150:intron | 50.0% | |
| CCCTTGCTTTCTACGATGCA+GGG | + | chr2_1:46019068-46019087 | None:intergenic | 50.0% | |
| CCCTGCATCGTAGAAAGCAA+GGG | - | chr2_1:46019065-46019084 | Msa0209150:intron | 50.0% | |
| TCCCTTGCTTTCTACGATGC+AGG | + | chr2_1:46019069-46019088 | None:intergenic | 50.0% | |
| ATCGTAGAAAGCAAGGGACC+AGG | - | chr2_1:46019071-46019090 | Msa0209150:intron | 50.0% | |
| AGTAACACCTTGTGCCATGC+TGG | - | chr2_1:46020000-46020019 | Msa0209150:intron | 50.0% | |
| GGGACCGGCTATGAATAGTA+AGG | + | chr2_1:46020317-46020336 | None:intergenic | 50.0% | |
| ATTCATAGCCGGTCCCAAGT+CGG | - | chr2_1:46020321-46020340 | Msa0209150:intron | 50.0% | |
| !!! | TCTTTTACCCGACTTGGGAC+CGG | + | chr2_1:46020332-46020351 | None:intergenic | 50.0% |
| CCCAAGTCGGGTAAAAGAAG+AGG | - | chr2_1:46020334-46020353 | Msa0209150:intron | 50.0% | |
| ! | CCCTCTTCTTTTACCCGACT+TGG | + | chr2_1:46020338-46020357 | None:intergenic | 50.0% |
| CGGGTAAAAGAAGAGGGTTG+TGG | - | chr2_1:46020341-46020360 | Msa0209150:intron | 50.0% | |
| GAAGAGGGTTGTGGTAGACT+TGG | - | chr2_1:46020350-46020369 | Msa0209150:intron | 50.0% | |
| AAACCACCGTATTCGGTTGG+TGG | - | chr2_1:46020454-46020473 | Msa0209150:intron | 50.0% | |
| !! | TCGGTTGGTGGTTGAAATGG+AGG | - | chr2_1:46020466-46020485 | Msa0209150:intron | 50.0% |
| !! | GTTGGTGGTTGAAATGGAGG+AGG | - | chr2_1:46020469-46020488 | Msa0209150:intron | 50.0% |
| TTGAAATGGAGGAGGGTCTC+AGG | - | chr2_1:46020477-46020496 | Msa0209150:intron | 50.0% | |
| TAAGACCGGCGATGTTGTAC+TGG | - | chr2_1:46020559-46020578 | Msa0209150:intron | 50.0% | |
| ! | TCCTCGGATTAGGTGTGTCC+TGG | - | chr2_1:46017002-46017021 | Msa0209150:intron | 55.0% |
| ! | AAGCAGCGCAGTGGACTTGA+GGG | + | chr2_1:46017152-46017171 | None:intergenic | 55.0% |
| ! | AAAGCAGCGCAGTGGACTTG+AGG | + | chr2_1:46017153-46017172 | None:intergenic | 55.0% |
| !!! | TCCACTGCGCTGCTTTTCTG+AGG | - | chr2_1:46017157-46017176 | Msa0209150:intron | 55.0% |
| ACCTCAGAAAAGCAGCGCAG+TGG | + | chr2_1:46017161-46017180 | None:intergenic | 55.0% | |
| TTTGTCTCCGCGTGTGCATG+TGG | - | chr2_1:46017382-46017401 | Msa0209150:intron | 55.0% | |
| GTATCCTCCACATGCACACG+CGG | + | chr2_1:46017392-46017411 | None:intergenic | 55.0% | |
| CTTAAGCCACACACGAAGGC+TGG | + | chr2_1:46017565-46017584 | None:intergenic | 55.0% | |
| GAAGCTGCAGACGATGATCG+AGG | - | chr2_1:46018343-46018362 | Msa0209150:intron | 55.0% | |
| ATTCCACTCCACGACCATCC+TGG | - | chr2_1:46018975-46018994 | Msa0209150:CDS | 55.0% | |
| ATTCCAGGATGGTCGTGGAG+TGG | + | chr2_1:46018981-46019000 | None:intergenic | 55.0% | |
| AAGGGACCAGGACATGCTCA+AGG | - | chr2_1:46019083-46019102 | Msa0209150:intron | 55.0% | |
| CACCAACTGCACGCAACCAA+GGG | + | chr2_1:46019292-46019311 | None:intergenic | 55.0% | |
| ACACCAACTGCACGCAACCA+AGG | + | chr2_1:46019293-46019312 | None:intergenic | 55.0% | |
| AGAACGTCCAGCATGGCACA+AGG | + | chr2_1:46020010-46020029 | None:intergenic | 55.0% | |
| TTCATAGCCGGTCCCAAGTC+GGG | - | chr2_1:46020322-46020341 | Msa0209150:intron | 55.0% | |
| CAACCACCAACCGAATACGG+TGG | + | chr2_1:46020460-46020479 | None:intergenic | 55.0% | |
| GAGGGGAGCCAAATCACTAG+AGG | - | chr2_1:46020886-46020905 | Msa0209150:intron | 55.0% | |
| TGCTGCAGATCCAAAGCAGG+TGG | + | chr2_1:46021275-46021294 | None:intergenic | 55.0% | |
| TGCTGCTGCAGATCCAAAGC+AGG | + | chr2_1:46021278-46021297 | None:intergenic | 55.0% | |
| ! | TGCTTTGGATCTGCAGCAGC+AGG | - | chr2_1:46021277-46021296 | Msa0209150:intron | 55.0% |
| GGATCTGCAGCAGCAGGAAA+TGG | - | chr2_1:46021283-46021302 | Msa0209150:CDS | 55.0% | |
| GCCAGGACACACCTAATCCG+AGG | + | chr2_1:46017006-46017025 | None:intergenic | 60.0% | |
| CGCGGAGACAAATCCCCTCA+AGG | + | chr2_1:46017374-46017393 | None:intergenic | 60.0% | |
| GCAGACGATGATCGAGGGCT+TGG | - | chr2_1:46018349-46018368 | Msa0209150:intron | 60.0% | |
| CGGTCATTCCAGGATGGTCG+TGG | + | chr2_1:46018986-46019005 | None:intergenic | 60.0% | |
| CAACTGCACGCAACCAAGGG+AGG | + | chr2_1:46019289-46019308 | None:intergenic | 60.0% | |
| CTCCCTTGGTTGCGTGCAGT+TGG | - | chr2_1:46019287-46019306 | Msa0209150:intron | 60.0% | |
| AGGTGCGAGAACGTCCAGCA+TGG | + | chr2_1:46020017-46020036 | None:intergenic | 60.0% | |
| GTGTCCTGGCGACACGACAC+CGG | - | chr2_1:46017016-46017035 | Msa0209150:intron | 65.0% | |
| GTCTCCGCGTGTGCATGTGG+AGG | - | chr2_1:46017385-46017404 | Msa0209150:intron | 65.0% | |
| GGTCTGCCAGCCTTCGTGTG+TGG | - | chr2_1:46017556-46017575 | Msa0209150:intron | 65.0% | |
| !! | TGTGCCGGTGTCGTGTCGCC+AGG | + | chr2_1:46017023-46017042 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 46016424 | 46021554 | 46016424 | ID=Msa0209150;Name=Msa0209150 |
| chr2_1 | mRNA | 46016424 | 46021554 | 46016424 | ID=Msa0209150-mRNA-1;Parent=Msa0209150;Name=Msa0209150-mRNA-1;_AED=0.17;_eAED=0.17;_QI=92|1|1|1|1|1|5|140|272 |
| chr2_1 | exon | 46016424 | 46016685 | 46016424 | ID=Msa0209150-mRNA-1:exon:13245;Parent=Msa0209150-mRNA-1 |
| chr2_1 | exon | 46017878 | 46018078 | 46017878 | ID=Msa0209150-mRNA-1:exon:13244;Parent=Msa0209150-mRNA-1 |
| chr2_1 | exon | 46018874 | 46019036 | 46018874 | ID=Msa0209150-mRNA-1:exon:13243;Parent=Msa0209150-mRNA-1 |
| chr2_1 | exon | 46019519 | 46019670 | 46019519 | ID=Msa0209150-mRNA-1:exon:13242;Parent=Msa0209150-mRNA-1 |
| chr2_1 | exon | 46021282 | 46021554 | 46021282 | ID=Msa0209150-mRNA-1:exon:13241;Parent=Msa0209150-mRNA-1 |
| chr2_1 | five_prime_UTR | 46021463 | 46021554 | 46021463 | ID=Msa0209150-mRNA-1:five_prime_utr;Parent=Msa0209150-mRNA-1 |
| chr2_1 | CDS | 46021282 | 46021462 | 46021282 | ID=Msa0209150-mRNA-1:cds;Parent=Msa0209150-mRNA-1 |
| chr2_1 | CDS | 46019519 | 46019670 | 46019519 | ID=Msa0209150-mRNA-1:cds;Parent=Msa0209150-mRNA-1 |
| chr2_1 | CDS | 46018874 | 46019036 | 46018874 | ID=Msa0209150-mRNA-1:cds;Parent=Msa0209150-mRNA-1 |
| chr2_1 | CDS | 46017878 | 46018078 | 46017878 | ID=Msa0209150-mRNA-1:cds;Parent=Msa0209150-mRNA-1 |
| chr2_1 | CDS | 46016564 | 46016685 | 46016564 | ID=Msa0209150-mRNA-1:cds;Parent=Msa0209150-mRNA-1 |
| chr2_1 | three_prime_UTR | 46016424 | 46016563 | 46016424 | ID=Msa0209150-mRNA-1:three_prime_utr;Parent=Msa0209150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
