AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211050 MtrunA17_Chr4g0004091 58.993 139 18 1 50 149 107 245 3.27e-45 152
Msa0211050 MtrunA17_Chr4g0004831 53.957 139 25 1 50 149 102 240 7.56e-39 135
Msa0211050 MtrunA17_Chr2g0282041 89.474 57 6 0 1 57 147 203 9.91e-29 113
Msa0211050 MtrunA17_Chr4g0047751 82.456 57 10 0 1 57 158 214 5.12e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211050 AT4G21660.2 87.273 55 7 0 1 55 163 217 2.16e-27 109
Msa0211050 AT4G21660.1 84.211 57 9 0 1 57 163 219 2.53e-27 109
Msa0211050 AT4G21660.3 83.929 56 9 0 1 56 163 218 3.47e-26 106
Msa0211050 AT3G16170.1 45.185 135 28 3 54 149 126 253 4.62e-23 97.4
Msa0211050 AT2G38170.2 52.239 67 9 1 180 223 127 193 2.04e-11 63.2
Msa0211050 AT2G38170.1 52.239 67 9 1 180 223 127 193 4.64e-11 62.0
Msa0211050 AT2G38170.3 52.239 67 9 1 180 223 127 193 5.01e-11 62.0

Find 76 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGATGTCAATGAGTTATT+TGG 0.185955 2_1:-51775670 Msa0211050:five_prime_UTR
AGAATTGGACATTCACAAAA+TGG 0.255854 2_1:-51774003 Msa0211050:CDS
AAGAAGAAGGTTTGAATTGA+TGG 0.308391 2_1:+51773453 None:intergenic
TCCTCTTAGAAGAGTAGAAT+TGG 0.345365 2_1:-51774018 Msa0211050:intron
TCAAATGTACCGTCGAATTC+AGG 0.346423 2_1:-51775834 Msa0211050:intron
CCGTCTGCTGAATTTGTTGC+TGG 0.348843 2_1:-51774480 Msa0211050:CDS
TTTGAGGACACTGCTGCTTC+AGG 0.350191 2_1:-51775628 Msa0211050:five_prime_UTR
CAGCTCTGAAGAACATTATC+AGG 0.356591 2_1:-51777266 Msa0211050:five_prime_UTR
CTTCCAACAATTGCAGGTTA+TGG 0.369594 2_1:+51775529 None:intergenic
ATGATGTCAATGAGTTATTT+GGG 0.370649 2_1:-51775669 Msa0211050:five_prime_UTR
TCAAACCTTCTTCTTGTACT+TGG 0.370919 2_1:-51773445 Msa0211050:CDS
CGACGGTACATTTGAATCTT+CGG 0.385027 2_1:+51775842 None:intergenic
TGCAGCAGATCCTAAGTTGC+TGG 0.399151 2_1:-51775105 Msa0211050:CDS
TAATGATGCTAGCAACTCTA+TGG 0.403205 2_1:-51775566 Msa0211050:five_prime_UTR
TCATACCTTCCAACAATTGC+AGG 0.410987 2_1:+51775523 None:intergenic
GTCTTCTTCACTGGTCCTAC+AGG 0.415281 2_1:-51773719 Msa0211050:intron
GAATTGGACATTCACAAAAT+GGG 0.421927 2_1:-51774002 Msa0211050:CDS
CTTGGAACTTCCCTACTTTG+TGG 0.430770 2_1:-51773427 Msa0211050:CDS
TTAGATGGACAATGGATTTG+AGG 0.430824 2_1:-51776463 Msa0211050:intron
ATTGAAATCCAGGGAAATCT+TGG 0.431539 2_1:-51774531 Msa0211050:intron
AATGCAACATGTGGGAATAT+TGG 0.431829 2_1:-51773545 Msa0211050:intron
TATATATCAGACATACCCTT+AGG 0.432727 2_1:-51775900 Msa0211050:intron
CTGATAATGTTCTTCAGAGC+TGG 0.435831 2_1:+51777267 None:intergenic
GTATTCTCTATTATTACAGT+TGG 0.447728 2_1:-51773578 Msa0211050:CDS
TTCTCTATTATTACAGTTGG+AGG 0.450730 2_1:-51773575 Msa0211050:CDS
ATACTCGCGACTTGGTTTAG+TGG 0.453344 2_1:-51774456 Msa0211050:CDS
TAGCAACTCTATGGAGTCAT+TGG 0.453627 2_1:-51775557 Msa0211050:five_prime_UTR
TTGAAAATTTAGATGGACAA+TGG 0.453902 2_1:-51776471 Msa0211050:intron
TCTCTATGTGATGAAGAATT+CGG 0.459964 2_1:-51774388 Msa0211050:intron
AGACAAATTGTCTTCTTCAC+TGG 0.467398 2_1:-51773728 Msa0211050:CDS
TTGTACACTAGCGGGACAAC+AGG 0.468065 2_1:-51773802 Msa0211050:CDS
ATGGCGGAGACGGCGAGGTA+CGG 0.471966 2_1:+51777292 None:intergenic
ACTTCTACCACAACAACATC+AGG 0.481401 2_1:+51775232 None:intergenic
TAGCCATAACCTGCAATTGT+TGG 0.488861 2_1:-51775532 Msa0211050:five_prime_UTR
AATCTTGGTGGAGCTCGAAT+AGG 0.490823 2_1:-51774516 Msa0211050:CDS
CTTTGGATTAGGTGAAGATC+CGG 0.494848 2_1:-51773833 Msa0211050:intron
TTGCTGGAATACTCGCGACT+TGG 0.497836 2_1:-51774464 Msa0211050:CDS
TGCAATGCCACCACAAAGTA+GGG 0.510435 2_1:+51773417 None:intergenic
AAGTTCCAAGTACAAGAAGA+AGG 0.515161 2_1:+51773440 None:intergenic
TGATGTTGATAATGAATTTG+AGG 0.521778 2_1:-51775644 Msa0211050:five_prime_UTR
TTGCAATGCCACCACAAAGT+AGG 0.522397 2_1:+51773416 None:intergenic
TACCCTTAGGGATGGATGGA+TGG 0.529376 2_1:-51775887 Msa0211050:five_prime_UTR
TGATAATGTTCTTCAGAGCT+GGG 0.529587 2_1:+51777268 None:intergenic
TGTGACCAATGCCTAGGTGC+AGG 0.530298 2_1:+51775053 None:intergenic
GGAACTTCCCTACTTTGTGG+TGG 0.538669 2_1:-51773424 Msa0211050:CDS
CCAATGCCTAGGTGCAGGTA+CGG 0.548490 2_1:+51775058 None:intergenic
ATGTTCTTCAGAGCTGGGTA+TGG 0.549422 2_1:+51777273 None:intergenic
AAGCCATCCATCCATCCCTA+AGG 0.550591 2_1:+51775884 None:intergenic
GACATACCCTTAGGGATGGA+TGG 0.550867 2_1:-51775891 Msa0211050:five_prime_UTR
AGAGCTGGGTATGGCGGAGA+CGG 0.551603 2_1:+51777282 None:intergenic
TCTGCATAGTTGAGTGCAAG+TGG 0.553335 2_1:+51774420 None:intergenic
ATGGACAATGGATTTGAGGA+TGG 0.554723 2_1:-51776459 Msa0211050:five_prime_UTR
ATATATCAGACATACCCTTA+GGG 0.560336 2_1:-51775899 Msa0211050:intron
CCAGCAACAAATTCAGCAGA+CGG 0.563226 2_1:+51774480 None:intergenic
TCTCTATTATTACAGTTGGA+GGG 0.566642 2_1:-51773574 Msa0211050:CDS
GAAATCCAGGGAAATCTTGG+TGG 0.568219 2_1:-51774528 Msa0211050:intron
CTCAAGACCTGATGTTGTTG+TGG 0.574621 2_1:-51775239 Msa0211050:intron
ATCAGACATACCCTTAGGGA+TGG 0.575259 2_1:-51775895 Msa0211050:intron
TTCTTCAGAGCTGGGTATGG+CGG 0.576008 2_1:+51777276 None:intergenic
CCGTACCTGCACCTAGGCAT+TGG 0.578210 2_1:-51775058 Msa0211050:CDS
TGTGGTGGCATTGCAAACCT+TGG 0.582228 2_1:-51773409 Msa0211050:CDS
CATAACCTGCAATTGTTGGA+AGG 0.584273 2_1:-51775528 Msa0211050:intron
CTGAAGAACATTATCAGGAT+CGG 0.593763 2_1:-51777261 Msa0211050:intron
GGGCTTCTTAATGCAACATG+TGG 0.594840 2_1:-51773554 Msa0211050:CDS
CTAGTGTACAAAATCAGTGC+CGG 0.599653 2_1:+51773814 None:intergenic
AATTGGACATTCACAAAATG+GGG 0.610443 2_1:-51774001 Msa0211050:CDS
CTCGCGACTTGGTTTAGTGG+AGG 0.621339 2_1:-51774453 Msa0211050:CDS
GGCTTCTTAATGCAACATGT+GGG 0.624011 2_1:-51773553 Msa0211050:CDS
AGCCATCCATCCATCCCTAA+GGG 0.629828 2_1:+51775885 None:intergenic
TGGGTATGGCGGAGACGGCG+AGG 0.654911 2_1:+51777287 None:intergenic
GCGGAGACGGCGAGGTACGG+CGG 0.662251 2_1:+51777295 None:intergenic
TGGCATTGCAAACCTTGGAG+TGG 0.673161 2_1:-51773404 Msa0211050:CDS
GTAACACCGTACCTGCACCT+AGG 0.692657 2_1:-51775064 Msa0211050:CDS
TGATGGCAAGCAGTCAACAG+AGG 0.701292 2_1:-51776419 Msa0211050:five_prime_UTR
TGATGTCAATGAGTTATTTG+GGG 0.714769 2_1:-51775668 Msa0211050:five_prime_UTR
CGGCGGTGAGAAGAAGATCG+CGG 0.716171 2_1:+51777312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAAAATTTCATATAAA+AGG + chr2_1:51776506-51776525 None:intergenic 10.0%
!!! AAAATTGTTTTAGTGATTTT+AGG - chr2_1:51773741-51773760 Msa0211050:CDS 15.0%
!!! AAATTGTTTTAGTGATTTTA+GGG - chr2_1:51773742-51773761 Msa0211050:CDS 15.0%
!! TGTAAATAACAAATAAGTAA+TGG + chr2_1:51774243-51774262 None:intergenic 15.0%
!!! CATCTAAATTTTCAATAAAA+GGG + chr2_1:51774270-51774289 None:intergenic 15.0%
!! ATATATATACAGCAAATATA+TGG + chr2_1:51774833-51774852 None:intergenic 15.0%
!!! TAGTAATATCATTTTCAAAT+TGG - chr2_1:51775318-51775337 Msa0211050:intron 15.0%
!!! ATTATCTTTGTTATATTGAT+TGG - chr2_1:51775961-51775980 Msa0211050:intron 15.0%
!!! TTATCTTTGTTATATTGATT+GGG - chr2_1:51775962-51775981 Msa0211050:intron 15.0%
!! TTTCAGAAAATTATGTGTTT+CGG - chr2_1:51773692-51773711 Msa0211050:intron 20.0%
!!! AAATCACTAAAACAATTTTC+TGG + chr2_1:51773740-51773759 None:intergenic 20.0%
!!! TGTATCTTTGATTTTAATTG+AGG - chr2_1:51773987-51774006 Msa0211050:CDS 20.0%
!!! GTATCTTTGATTTTAATTGA+GGG - chr2_1:51773988-51774007 Msa0211050:CDS 20.0%
!!! AAATTTTTTCACTTCTTTTG+TGG + chr2_1:51774081-51774100 None:intergenic 20.0%
!!! TTAGTCTGAGATAAAAATAA+TGG - chr2_1:51774122-51774141 Msa0211050:intron 20.0%
!!! TAGTCTGAGATAAAAATAAT+GGG - chr2_1:51774123-51774142 Msa0211050:intron 20.0%
!!! GAAGTATCTTTTGATTTTTT+TGG - chr2_1:51774150-51774169 Msa0211050:intron 20.0%
!!! CCATCTAAATTTTCAATAAA+AGG + chr2_1:51774271-51774290 None:intergenic 20.0%
!!! CCTTTTATTGAAAATTTAGA+TGG - chr2_1:51774268-51774287 Msa0211050:intron 20.0%
!! ATAAAACCCTAAATAAAAGA+GGG + chr2_1:51774568-51774587 None:intergenic 20.0%
!!! TTGAAGTTTAAAATGCTTTT+CGG - chr2_1:51775157-51775176 Msa0211050:intron 20.0%
!!! AATATCATTTTCAAATTGGT+TGG - chr2_1:51775322-51775341 Msa0211050:intron 20.0%
!! AGAAATAGTTTCAAATTGTT+GGG - chr2_1:51775549-51775568 Msa0211050:five_prime_UTR 20.0%
!!! TGTTTCATAATTTCATTTTC+AGG - chr2_1:51775605-51775624 Msa0211050:five_prime_UTR 20.0%
!!! ATAATTTCATTTTCAGGTTT+GGG - chr2_1:51775611-51775630 Msa0211050:five_prime_UTR 20.0%
!! AGGTTTATCTTATATATGTA+TGG - chr2_1:51775847-51775866 Msa0211050:five_prime_UTR 20.0%
!! ATCAATCTGCTAAAAATTTA+AGG - chr2_1:51776088-51776107 Msa0211050:intron 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG - chr2_1:51776509-51776528 Msa0211050:intron 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG - chr2_1:51776824-51776843 Msa0211050:intron 20.0%
! TTGCATGTGTAAATTGAATT+AGG - chr2_1:51773550-51773569 Msa0211050:CDS 25.0%
! TGCATGTGTAAATTGAATTA+GGG - chr2_1:51773551-51773570 Msa0211050:CDS 25.0%
! TGTAAATTGAATTAGGGTTA+GGG - chr2_1:51773557-51773576 Msa0211050:CDS 25.0%
!!! GGGTTTTTTGATTTTAATTG+AGG - chr2_1:51773605-51773624 Msa0211050:intron 25.0%
!!! GGTTTGTTTTAGTGATTTTA+GGG - chr2_1:51773796-51773815 Msa0211050:CDS 25.0%
! AACAGTGAAACACAAAATTA+AGG + chr2_1:51773857-51773876 None:intergenic 25.0%
!!! TTTGCATTGATTAGTTGATT+TGG - chr2_1:51773879-51773898 Msa0211050:intron 25.0%
! ATTTGAGAGAGAAGAAATAA+TGG - chr2_1:51774097-51774116 Msa0211050:intron 25.0%
! TTTGAGAGAGAAGAAATAAT+GGG - chr2_1:51774098-51774117 Msa0211050:intron 25.0%
! TTGAAAATTTAGATGGACAA+TGG - chr2_1:51774275-51774294 Msa0211050:intron 25.0%
! CATAAAACCCTAAATAAAAG+AGG + chr2_1:51774569-51774588 None:intergenic 25.0%
!!! CTCTTTTATTTAGGGTTTTA+TGG - chr2_1:51774567-51774586 Msa0211050:intron 25.0%
! CACTGAAATAAATTGTATCA+CGG - chr2_1:51774657-51774676 Msa0211050:intron 25.0%
!! TCAGCTTTTATATATAACGA+TGG + chr2_1:51774969-51774988 None:intergenic 25.0%
! TCATTAGTGAACACTATAAT+TGG - chr2_1:51774989-51775008 Msa0211050:intron 25.0%
! AATGATGTCAATGAGTTATT+TGG - chr2_1:51775076-51775095 Msa0211050:CDS 25.0%
! ATGATGTCAATGAGTTATTT+GGG - chr2_1:51775077-51775096 Msa0211050:CDS 25.0%
!!! TGATGTTGATAATGAATTTG+AGG - chr2_1:51775102-51775121 Msa0211050:CDS 25.0%
! ATTACTACTTCTGATAAAAG+TGG + chr2_1:51775305-51775324 None:intergenic 25.0%
! CAGAAATAGTTTCAAATTGT+TGG - chr2_1:51775548-51775567 Msa0211050:five_prime_UTR 25.0%
! ATGAAACATCATTTGCATAA+CGG + chr2_1:51775593-51775612 None:intergenic 25.0%
!!! CATAATTTCATTTTCAGGTT+TGG - chr2_1:51775610-51775629 Msa0211050:five_prime_UTR 25.0%
!!! ACAAAAGAGAAATTTTTTGC+AGG - chr2_1:51775713-51775732 Msa0211050:intron 25.0%
! CCTATAATAACTATCAAGTT+AGG + chr2_1:51775750-51775769 None:intergenic 25.0%
!! CCTAACTTGATAGTTATTAT+AGG - chr2_1:51775747-51775766 Msa0211050:intron 25.0%
! TGAAATTGATGAAGTCAATA+AGG - chr2_1:51775827-51775846 Msa0211050:intron 25.0%
! ATCTTATATATGTATGGATG+TGG - chr2_1:51775853-51775872 Msa0211050:five_prime_UTR 25.0%
! AATAAAAGAGAAACAACTCA+AGG + chr2_1:51775944-51775963 None:intergenic 25.0%
!! TGTTATATTGATTGGGAATA+TGG - chr2_1:51775969-51775988 Msa0211050:intron 25.0%
! TCGTTTAGTCAAATTATGTA+TGG - chr2_1:51776191-51776210 Msa0211050:intron 25.0%
! ACATTAAACAGACAAAAGAA+AGG + chr2_1:51776422-51776441 None:intergenic 25.0%
!! ATTTTCCATTGACATTATCT+TGG - chr2_1:51776478-51776497 Msa0211050:intron 25.0%
!! ATCATATATACTTTTCACGA+AGG + chr2_1:51776555-51776574 None:intergenic 25.0%
! TTCAAAATGAAACTTACCTA+AGG - chr2_1:51776585-51776604 Msa0211050:intron 25.0%
! TACCTAAGGAAAAAAAAAGT+TGG - chr2_1:51776599-51776618 Msa0211050:intron 25.0%
!!! AAACTGAGAAAAGGTTTTAT+TGG + chr2_1:51776681-51776700 None:intergenic 25.0%
! AATATGGAAAAACTGAGAAA+AGG + chr2_1:51776690-51776709 None:intergenic 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG - chr2_1:51776896-51776915 Msa0211050:intron 25.0%
!! TTTTTCATATCCTTTGGATT+AGG - chr2_1:51776902-51776921 Msa0211050:intron 25.0%
!! GAACAATTTTATATACCTGT+AGG + chr2_1:51777045-51777064 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG - chr2_1:51777168-51777187 Msa0211050:intron 25.0%
! GAATACTTACAACAACAATT+TGG + chr2_1:51777262-51777281 None:intergenic 25.0%
!! TGTTGTAAGTATTCTCTTTT+AGG - chr2_1:51777268-51777287 Msa0211050:five_prime_UTR 25.0%
TTTACACATGCAAATTCTGA+AGG + chr2_1:51773543-51773562 None:intergenic 30.0%
GTGTAAATTGAATTAGGGTT+AGG - chr2_1:51773556-51773575 Msa0211050:CDS 30.0%
!!! TAATTGAGGTTTTGATTCCT+TGG - chr2_1:51773619-51773638 Msa0211050:intron 30.0%
TAAACAACAACACAAAACCA+AGG + chr2_1:51773639-51773658 None:intergenic 30.0%
!!! GATTTTAGGGTTTCATTTCT+TGG - chr2_1:51773755-51773774 Msa0211050:CDS 30.0%
!!! TTGGTTTTGGGTTTGATTTT+AGG - chr2_1:51773774-51773793 Msa0211050:CDS 30.0%
!!! TGGTTTTGGGTTTGATTTTA+GGG - chr2_1:51773775-51773794 Msa0211050:CDS 30.0%
!!! GGGTTTGTTTTAGTGATTTT+AGG - chr2_1:51773795-51773814 Msa0211050:CDS 30.0%
!! ATTAGTTGATTTGGAATGAC+AGG - chr2_1:51773888-51773907 Msa0211050:intron 30.0%
!! TTAGTTGATTTGGAATGACA+GGG - chr2_1:51773889-51773908 Msa0211050:intron 30.0%
!!! TTTGATTTTAATTGAGGGTC+TGG - chr2_1:51773993-51774012 Msa0211050:CDS 30.0%
ACTTTCACAGTGATTTAGTT+AGG - chr2_1:51774449-51774468 Msa0211050:CDS 30.0%
AAGAATAGTGAGAGTAGAAT+TGG - chr2_1:51774601-51774620 Msa0211050:intron 30.0%
TGAAATAAATTGTATCACGG+AGG - chr2_1:51774660-51774679 Msa0211050:intron 30.0%
TATATATCAGACATACCCTT+AGG - chr2_1:51774846-51774865 Msa0211050:intron 30.0%
ATATATCAGACATACCCTTA+GGG - chr2_1:51774847-51774866 Msa0211050:intron 30.0%
AAAAACATACCTGAATTCGA+CGG + chr2_1:51774924-51774943 None:intergenic 30.0%
!!! CAGGTATGTTTTTAGTCTAT+AGG - chr2_1:51774931-51774950 Msa0211050:intron 30.0%
!!! TTTTTTAGGCGTCGAAATTA+AGG - chr2_1:51775051-51775070 Msa0211050:CDS 30.0%
TGATGTCAATGAGTTATTTG+GGG - chr2_1:51775078-51775097 Msa0211050:CDS 30.0%
!!! TTCATTGCATCTTTTTTTGC+AGG - chr2_1:51775417-51775436 Msa0211050:intron 30.0%
AATGATGTAAACATGTCTGA+TGG - chr2_1:51775772-51775791 Msa0211050:intron 30.0%
TGTGTCTTGAATTTATGTTG+TGG - chr2_1:51776010-51776029 Msa0211050:intron 30.0%
TGGAAAGCAGTTATCAAAAA+AGG + chr2_1:51776037-51776056 None:intergenic 30.0%
!! TTGATAACTGCTTTCCATTT+TGG - chr2_1:51776040-51776059 Msa0211050:intron 30.0%
TTGAATACTTAGTCTATTGC+TGG - chr2_1:51776115-51776134 Msa0211050:intron 30.0%
TGAATACTTAGTCTATTGCT+GGG - chr2_1:51776116-51776135 Msa0211050:intron 30.0%
TCTCTATGTGATGAAGAATT+CGG - chr2_1:51776358-51776377 Msa0211050:intron 30.0%
CTTGTGAACATTAAGAATTC+AGG - chr2_1:51776446-51776465 Msa0211050:five_prime_UTR 30.0%
!!! CACCAACTTTTTTTTTCCTT+AGG + chr2_1:51776604-51776623 None:intergenic 30.0%
!! ATATTGAGTACTGAAGATCA+TGG - chr2_1:51776635-51776654 Msa0211050:intron 30.0%
TAAGAGGAATTATTAGGAAC+AGG + chr2_1:51776716-51776735 None:intergenic 30.0%
! CTCTTCTAAGAGGAATTATT+AGG + chr2_1:51776722-51776741 None:intergenic 30.0%
AGAATTGGACATTCACAAAA+TGG - chr2_1:51776743-51776762 Msa0211050:intron 30.0%
GAATTGGACATTCACAAAAT+GGG - chr2_1:51776744-51776763 Msa0211050:intron 30.0%
AATTGGACATTCACAAAATG+GGG - chr2_1:51776745-51776764 Msa0211050:intron 30.0%
! TTGATCTTTCGACATTTTTC+AGG + chr2_1:51776793-51776812 None:intergenic 30.0%
TTCTCTATTATTACAGTTGG+AGG - chr2_1:51777171-51777190 Msa0211050:intron 30.0%
TCTCTATTATTACAGTTGGA+GGG - chr2_1:51777172-51777191 Msa0211050:intron 30.0%
AAGAAGAAGGTTTGAATTGA+TGG + chr2_1:51777296-51777315 None:intergenic 30.0%
! TGATAATGTTCTTCAGAGCT+GGG + chr2_1:51773481-51773500 None:intergenic 35.0%
CTGAAGAACATTATCAGGAT+CGG - chr2_1:51773485-51773504 Msa0211050:intron 35.0%
! TGCTTGCATGTTTTCAGAAA+AGG - chr2_1:51773584-51773603 Msa0211050:CDS 35.0%
! GCTTGCATGTTTTCAGAAAA+GGG - chr2_1:51773585-51773604 Msa0211050:CDS 35.0%
! AGGGTTTCATTTCTTGGTTT+TGG - chr2_1:51773761-51773780 Msa0211050:CDS 35.0%
!! GGGTTTCATTTCTTGGTTTT+GGG - chr2_1:51773762-51773781 Msa0211050:CDS 35.0%
!! TAGTTGATTTGGAATGACAG+GGG - chr2_1:51773890-51773909 Msa0211050:intron 35.0%
TTTGACGATGCTAATGTTTG+TGG - chr2_1:51773933-51773952 Msa0211050:intron 35.0%
! TTAGATGGACAATGGATTTG+AGG - chr2_1:51774283-51774302 Msa0211050:intron 35.0%
! ACAAGCAGCTTTTGATATGA+TGG - chr2_1:51774310-51774329 Msa0211050:intron 35.0%
CAGTCAACAGAGGAAAAAAA+GGG - chr2_1:51774337-51774356 Msa0211050:intron 35.0%
ATGCTTCTGATCCTTTGATT+TGG - chr2_1:51774528-51774547 Msa0211050:intron 35.0%
! TGCTTCTGATCCTTTGATTT+GGG - chr2_1:51774529-51774548 Msa0211050:intron 35.0%
AAATAAAAGAGGGCTCATCA+AGG + chr2_1:51774558-51774577 None:intergenic 35.0%
!! TGATGAGCCCTCTTTTATTT+AGG - chr2_1:51774558-51774577 Msa0211050:intron 35.0%
!! GATGAGCCCTCTTTTATTTA+GGG - chr2_1:51774559-51774578 Msa0211050:intron 35.0%
CGGAGGAAACAATCAATATT+AGG - chr2_1:51774677-51774696 Msa0211050:intron 35.0%
TAATGATGCTAGCAACTCTA+TGG - chr2_1:51775180-51775199 Msa0211050:intron 35.0%
! CGTTGTCTAATTTTGCGAAT+TGG + chr2_1:51775454-51775473 None:intergenic 35.0%
TTCAAAAACACCAGCAACTT+AGG + chr2_1:51775654-51775673 None:intergenic 35.0%
CAAGAAACCTCATTCCAAAA+TGG + chr2_1:51776057-51776076 None:intergenic 35.0%
!!! CATTTTGGAATGAGGTTTCT+TGG - chr2_1:51776055-51776074 Msa0211050:intron 35.0%
! TATGTATGGCATTGAAATCC+AGG - chr2_1:51776205-51776224 Msa0211050:intron 35.0%
! ATGTATGGCATTGAAATCCA+GGG - chr2_1:51776206-51776225 Msa0211050:intron 35.0%
ATTGAAATCCAGGGAAATCT+TGG - chr2_1:51776215-51776234 Msa0211050:intron 35.0%
AGGTACCAAGATAATGTCAA+TGG + chr2_1:51776486-51776505 None:intergenic 35.0%
TATTAGGAACAGGCAGAATA+TGG + chr2_1:51776706-51776725 None:intergenic 35.0%
TCCTCTTAGAAGAGTAGAAT+TGG - chr2_1:51776728-51776747 Msa0211050:intron 35.0%
TCCAATTCTACTCTTCTAAG+AGG + chr2_1:51776732-51776751 None:intergenic 35.0%
ATTGCCTTGGAAAACTGATA+CGG + chr2_1:51776866-51776885 None:intergenic 35.0%
ATGATGAGAAAGAATTGCCT+TGG + chr2_1:51776879-51776898 None:intergenic 35.0%
AGACAAATTGTCTTCTTCAC+TGG - chr2_1:51777018-51777037 Msa0211050:intron 35.0%
AATGCAACATGTGGGAATAT+TGG - chr2_1:51777201-51777220 Msa0211050:intron 35.0%
TCAAACCTTCTTCTTGTACT+TGG - chr2_1:51777301-51777320 Msa0211050:five_prime_UTR 35.0%
AAGTTCCAAGTACAAGAAGA+AGG + chr2_1:51777309-51777328 None:intergenic 35.0%
!! CATATTTTTGTTCCACTCCA+AGG + chr2_1:51777357-51777376 None:intergenic 35.0%
! CTGATAATGTTCTTCAGAGC+TGG + chr2_1:51773482-51773501 None:intergenic 40.0%
!! CAGCTCTGAAGAACATTATC+AGG - chr2_1:51773480-51773499 Msa0211050:intron 40.0%
!!! AGGGTCTGGTCTTTTGATTT+TGG - chr2_1:51774007-51774026 Msa0211050:CDS 40.0%
!!! GGGTCTGGTCTTTTGATTTT+GGG - chr2_1:51774008-51774027 Msa0211050:CDS 40.0%
! ATGGACAATGGATTTGAGGA+TGG - chr2_1:51774287-51774306 Msa0211050:intron 40.0%
GCAGTCAACAGAGGAAAAAA+AGG - chr2_1:51774336-51774355 Msa0211050:intron 40.0%
AATCACTGTGAAAGTGAGAG+TGG + chr2_1:51774444-51774463 None:intergenic 40.0%
ATCAAGGACTCCCAAATCAA+AGG + chr2_1:51774542-51774561 None:intergenic 40.0%
CGACGGTACATTTGAATCTT+CGG + chr2_1:51774907-51774926 None:intergenic 40.0%
TCAAATGTACCGTCGAATTC+AGG - chr2_1:51774912-51774931 Msa0211050:intron 40.0%
TAGCAACTCTATGGAGTCAT+TGG - chr2_1:51775189-51775208 Msa0211050:intron 40.0%
TAGCCATAACCTGCAATTGT+TGG - chr2_1:51775214-51775233 Msa0211050:intron 40.0%
CTTCCAACAATTGCAGGTTA+TGG + chr2_1:51775220-51775239 None:intergenic 40.0%
CATAACCTGCAATTGTTGGA+AGG - chr2_1:51775218-51775237 Msa0211050:intron 40.0%
TCATACCTTCCAACAATTGC+AGG + chr2_1:51775226-51775245 None:intergenic 40.0%
! GCAATTGTTGGAAGGTATGA+TGG - chr2_1:51775226-51775245 Msa0211050:intron 40.0%
ACTTCTACCACAACAACATC+AGG + chr2_1:51775517-51775536 None:intergenic 40.0%
ATTAGTACATCACACACGCA+AGG + chr2_1:51775803-51775822 None:intergenic 40.0%
TTGCGTGTGTGATGTACTAA+TGG - chr2_1:51775802-51775821 Msa0211050:intron 40.0%
TGCGTGTGTGATGTACTAAT+GGG - chr2_1:51775803-51775822 Msa0211050:intron 40.0%
ACTGGTAGGTGTTTGGAAAT+GGG - chr2_1:51775915-51775934 Msa0211050:intron 40.0%
!!! CTGCTTTCCATTTTGGAATG+AGG - chr2_1:51776047-51776066 Msa0211050:intron 40.0%
! ATCTCCGTATCAGTTTTCCA+AGG - chr2_1:51776859-51776878 Msa0211050:intron 40.0%
! CTTTGGATTAGGTGAAGATC+CGG - chr2_1:51776913-51776932 Msa0211050:intron 40.0%
CTAGTGTACAAAATCAGTGC+CGG + chr2_1:51776935-51776954 None:intergenic 40.0%
!!! GCACTGATTTTGTACACTAG+CGG - chr2_1:51776935-51776954 Msa0211050:intron 40.0%
!!! CACTGATTTTGTACACTAGC+GGG - chr2_1:51776936-51776955 Msa0211050:intron 40.0%
GGCTTCTTAATGCAACATGT+GGG - chr2_1:51777193-51777212 Msa0211050:intron 40.0%
ATGTTCTTCAGAGCTGGGTA+TGG + chr2_1:51773476-51773495 None:intergenic 45.0%
GAACATTATCAGGATCGGTG+AGG - chr2_1:51773490-51773509 Msa0211050:intron 45.0%
TGTGAAAGTGAGAGTGGTGA+TGG + chr2_1:51774438-51774457 None:intergenic 45.0%
ATCAGACATACCCTTAGGGA+TGG - chr2_1:51774851-51774870 Msa0211050:intron 45.0%
CTCAAGACCTGATGTTGTTG+TGG - chr2_1:51775507-51775526 Msa0211050:intron 45.0%
! TTGGGTATCCGCTTCTTTTG+AGG - chr2_1:51775567-51775586 Msa0211050:five_prime_UTR 45.0%
CATAACGGCCTCAAAAGAAG+CGG + chr2_1:51775578-51775597 None:intergenic 45.0%
! CTCTTTTGTGACCAATGCCT+AGG + chr2_1:51775702-51775721 None:intergenic 45.0%
GCGTGTGTGATGTACTAATG+GGG - chr2_1:51775804-51775823 Msa0211050:intron 45.0%
TGTATGGATGTGGTTCTTGC+AGG - chr2_1:51775863-51775882 Msa0211050:five_prime_UTR 45.0%
GTATGGATGTGGTTCTTGCA+GGG - chr2_1:51775864-51775883 Msa0211050:five_prime_UTR 45.0%
TATGGATGTGGTTCTTGCAG+GGG - chr2_1:51775865-51775884 Msa0211050:five_prime_UTR 45.0%
TTTCCAAACACCTACCAGTC+CGG + chr2_1:51775914-51775933 None:intergenic 45.0%
GACTGGTAGGTGTTTGGAAA+TGG - chr2_1:51775914-51775933 Msa0211050:intron 45.0%
GAAATCCAGGGAAATCTTGG+TGG - chr2_1:51776218-51776237 Msa0211050:intron 45.0%
AATCTTGGTGGAGCTCGAAT+AGG - chr2_1:51776230-51776249 Msa0211050:intron 45.0%
CCAGCAACAAATTCAGCAGA+CGG + chr2_1:51776269-51776288 None:intergenic 45.0%
!! ATACTCGCGACTTGGTTTAG+TGG - chr2_1:51776290-51776309 Msa0211050:intron 45.0%
TCTGCATAGTTGAGTGCAAG+TGG + chr2_1:51776329-51776348 None:intergenic 45.0%
CGGATCTTCACCTAATCCAA+AGG + chr2_1:51776915-51776934 None:intergenic 45.0%
GGGCTTCTTAATGCAACATG+TGG - chr2_1:51777192-51777211 Msa0211050:intron 45.0%
CTTGGAACTTCCCTACTTTG+TGG - chr2_1:51777319-51777338 Msa0211050:five_prime_UTR 45.0%
TGCAATGCCACCACAAAGTA+GGG + chr2_1:51777332-51777351 None:intergenic 45.0%
TTGCAATGCCACCACAAAGT+AGG + chr2_1:51777333-51777352 None:intergenic 45.0%
!!! TAATTAGATATTATTTTTTT+AGG - chr2_1:51775037-51775056 Msa0211050:CDS 5.0%
TTCTTCAGAGCTGGGTATGG+CGG + chr2_1:51773473-51773492 None:intergenic 50.0%
TGATGGCAAGCAGTCAACAG+AGG - chr2_1:51774327-51774346 Msa0211050:intron 50.0%
!! GAAAGTGAGAGTGGTGATGG+AGG + chr2_1:51774435-51774454 None:intergenic 50.0%
GACATACCCTTAGGGATGGA+TGG - chr2_1:51774855-51774874 Msa0211050:intron 50.0%
TACCCTTAGGGATGGATGGA+TGG - chr2_1:51774859-51774878 Msa0211050:intron 50.0%
AGCCATCCATCCATCCCTAA+GGG + chr2_1:51774864-51774883 None:intergenic 50.0%
AAGCCATCCATCCATCCCTA+AGG + chr2_1:51774865-51774884 None:intergenic 50.0%
! TTTGAGGACACTGCTGCTTC+AGG - chr2_1:51775118-51775137 Msa0211050:CDS 50.0%
TGCAGCAGATCCTAAGTTGC+TGG - chr2_1:51775641-51775660 Msa0211050:five_prime_UTR 50.0%
GCTTTGGCAATCACCAATCC+CGG - chr2_1:51775892-51775911 Msa0211050:five_prime_UTR 50.0%
TTCCAAACACCTACCAGTCC+GGG + chr2_1:51775913-51775932 None:intergenic 50.0%
!! CCGTCTGCTGAATTTGTTGC+TGG - chr2_1:51776266-51776285 Msa0211050:intron 50.0%
TTGCTGGAATACTCGCGACT+TGG - chr2_1:51776282-51776301 Msa0211050:intron 50.0%
TTGTACACTAGCGGGACAAC+AGG - chr2_1:51776944-51776963 Msa0211050:intron 50.0%
GTCTTCTTCACTGGTCCTAC+AGG - chr2_1:51777027-51777046 Msa0211050:intron 50.0%
GGAACTTCCCTACTTTGTGG+TGG - chr2_1:51777322-51777341 Msa0211050:five_prime_UTR 50.0%
TGTGGTGGCATTGCAAACCT+TGG - chr2_1:51777337-51777356 Msa0211050:five_prime_UTR 50.0%
TGGCATTGCAAACCTTGGAG+TGG - chr2_1:51777342-51777361 Msa0211050:five_prime_UTR 50.0%
GTAACACCGTACCTGCACCT+AGG - chr2_1:51775682-51775701 Msa0211050:five_prime_UTR 55.0%
CCAATGCCTAGGTGCAGGTA+CGG + chr2_1:51775691-51775710 None:intergenic 55.0%
TGTGACCAATGCCTAGGTGC+AGG + chr2_1:51775696-51775715 None:intergenic 55.0%
ATGTGGTTCTTGCAGGGGAG+CGG - chr2_1:51775870-51775889 Msa0211050:five_prime_UTR 55.0%
!! ATCACCAATCCCGGACTGGT+AGG - chr2_1:51775901-51775920 Msa0211050:intron 55.0%
AACACCTACCAGTCCGGGAT+TGG + chr2_1:51775908-51775927 None:intergenic 55.0%
!! ATCCCGGACTGGTAGGTGTT+TGG - chr2_1:51775908-51775927 Msa0211050:intron 55.0%
GAGCTCCACCAAGATTTCCC+TGG + chr2_1:51776226-51776245 None:intergenic 55.0%
!! CTCGCGACTTGGTTTAGTGG+AGG - chr2_1:51776293-51776312 Msa0211050:intron 55.0%
CGGCGGTGAGAAGAAGATCG+CGG + chr2_1:51773437-51773456 None:intergenic 60.0%
! AGAGCTGGGTATGGCGGAGA+CGG + chr2_1:51773467-51773486 None:intergenic 60.0%
CCGTACCTGCACCTAGGCAT+TGG - chr2_1:51775688-51775707 Msa0211050:five_prime_UTR 60.0%
TTCTTGCAGGGGAGCGGCTT+TGG - chr2_1:51775876-51775895 Msa0211050:five_prime_UTR 60.0%
GGCAATCACCAATCCCGGAC+TGG - chr2_1:51775897-51775916 Msa0211050:intron 60.0%
! ATGGCGGAGACGGCGAGGTA+CGG + chr2_1:51773457-51773476 None:intergenic 65.0%
! TGGGTATGGCGGAGACGGCG+AGG + chr2_1:51773462-51773481 None:intergenic 70.0%
GCGGAGACGGCGAGGTACGG+CGG + chr2_1:51773454-51773473 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51773375 51777393 51773375 ID=Msa0211050;Name=Msa0211050
chr2_1 mRNA 51773375 51777393 51773375 ID=Msa0211050-mRNA-1;Parent=Msa0211050;Name=Msa0211050-mRNA-1;_AED=0.23;_eAED=0.23;_QI=502|0.6|0.72|1|0.4|0.45|11|0|226
chr2_1 exon 51773375 51773478 51773375 ID=Msa0211050-mRNA-1:exon:14392;Parent=Msa0211050-mRNA-1
chr2_1 exon 51773546 51773612 51773546 ID=Msa0211050-mRNA-1:exon:14391;Parent=Msa0211050-mRNA-1
chr2_1 exon 51773720 51773844 51773720 ID=Msa0211050-mRNA-1:exon:14390;Parent=Msa0211050-mRNA-1
chr2_1 exon 51773956 51774028 51773956 ID=Msa0211050-mRNA-1:exon:14389;Parent=Msa0211050-mRNA-1
chr2_1 exon 51774389 51774541 51774389 ID=Msa0211050-mRNA-1:exon:14388;Parent=Msa0211050-mRNA-1
chr2_1 exon 51775034 51775141 51775034 ID=Msa0211050-mRNA-1:exon:14387;Parent=Msa0211050-mRNA-1
chr2_1 exon 51775240 51775329 51775240 ID=Msa0211050-mRNA-1:exon:14386;Parent=Msa0211050-mRNA-1
chr2_1 exon 51775529 51775709 51775529 ID=Msa0211050-mRNA-1:exon:14385;Parent=Msa0211050-mRNA-1
chr2_1 exon 51775835 51775912 51775835 ID=Msa0211050-mRNA-1:exon:14384;Parent=Msa0211050-mRNA-1
chr2_1 exon 51776410 51776481 51776410 ID=Msa0211050-mRNA-1:exon:14383;Parent=Msa0211050-mRNA-1
chr2_1 exon 51777262 51777393 51777262 ID=Msa0211050-mRNA-1:exon:14382;Parent=Msa0211050-mRNA-1
chr2_1 five_prime_UTR 51777262 51777393 51777262 ID=Msa0211050-mRNA-1:five_prime_utr;Parent=Msa0211050-mRNA-1
chr2_1 five_prime_UTR 51776410 51776481 51776410 ID=Msa0211050-mRNA-1:five_prime_utr;Parent=Msa0211050-mRNA-1
chr2_1 five_prime_UTR 51775835 51775912 51775835 ID=Msa0211050-mRNA-1:five_prime_utr;Parent=Msa0211050-mRNA-1
chr2_1 five_prime_UTR 51775529 51775709 51775529 ID=Msa0211050-mRNA-1:five_prime_utr;Parent=Msa0211050-mRNA-1
chr2_1 five_prime_UTR 51775291 51775329 51775291 ID=Msa0211050-mRNA-1:five_prime_utr;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51775240 51775290 51775240 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51775034 51775141 51775034 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51774389 51774541 51774389 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51773956 51774028 51773956 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51773720 51773844 51773720 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51773546 51773612 51773546 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
chr2_1 CDS 51773375 51773478 51773375 ID=Msa0211050-mRNA-1:cds;Parent=Msa0211050-mRNA-1
Gene Sequence

>Msa0211050

ATGAAAATTGCTGAACTAGAACAAGTTAGCTCAAGACCTGATGTTGTTGTGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACCGTACCTGCACCTAGGCATTGGTCACAAAAGAGAAATTTTTTGCAGGGAAATCTTGGTGGAGCTCGAATAGGAATAGTTGTGAAACCGTCTGCTGAATTTGTTGCTGGAATACTCGCGACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAACTATGCAGAAGTAGAGCTTCTCTATGTGATGAAGAATTCGAGTAGAATTGGACATTCACAAAATGGGGAAATTGATGCAGACAGAATTTTCCTGAAAAATGTCGAAAGATCAAGTGAAGATCCGGCACTGATTTTGTACACTAGCGGGACAACAGGTAAAAACAAACAGATATTAGATTGTATGCTGATTGTTACTTCAAATTTTGCAGACAAATTGTCTTCTTCACTGGTCCTACAGCTAAATGTTTATGTATTCTCTATTATTACAGTTGGAGGGCTTCTTAATGCAACATGTGGGAATATTGGTTCCATCAATTCAAACCTTCTTCTTGTACTTGGAACTTCCCTACTTTGTGGTGGCATTGCAAACCTTGGAGTGGAACAAAAATATGATAGAGTAAGTCCCTAA

Protein sequence

>Msa0211050

MKIAELEQVSSRPDVVVVWDATAADPKLLVFLKSYRNTVPAPRHWSQKRNFLQGNLGGARIGIVVKPSAEFVAGILATWFSGGVAVPLALNYAEVELLYVMKNSSRIGHSQNGEIDADRIFLKNVERSSEDPALILYTSGTTGKNKQILDCMLIVTSNFADKLSSSLVLQLNVYVFSIITVGGLLNATCGNIGSINSNLLLVLGTSLLCGGIANLGVEQKYDRVSP*